@theglitchking/semantic-memory 1.2.1 → 1.2.2

package/.claude-plugin/marketplace.json

@@ -6,13 +6,13 @@
   },
   "metadata": {
     "description": "Single-plugin marketplace for semantic-memory — the unified memory-layer plugin. v1.1.0 absorbs brain's strengths: AGENTS.md contract artifact, hard-gated verification sessions, multi-agent skill bundler (codex/copilot/pi), and SessionStart drift detection — all backwards-compatible with v1.0.x via deprecation shims.",
-    "version": "1.2.1"
+    "version": "1.2.2"
   },
   "plugins": [
     {
       "name": "semantic-memory",
       "description": "Unified memory-layer plugin for Claude Code. One MCP server, 40 tools across multi-corpus search/read/write/graph/lint/sessions/contract. v1.1.0 adds: AGENTS.md contract artifact, hard-gated verification sessions (session_start/run/finish/status), proposal-mode synthesize_note + synthesize_promote, multi-agent skill bundler (codex/copilot/pi via the new `skills` CLI), and SessionStart drift detection. Backwards-compatible with v1.0.x — every previous tool name remains callable through deprecation shims (removed in v2.0.0).",
-      "version": "1.2.1",
+      "version": "1.2.2",
       "author": {
         "name": "TheGlitchKing"
       },

package/.claude-plugin/plugin.json

@@ -1,14 +1,14 @@
 {
   "name": "semantic-memory",
   "description": "Unified memory-layer plugin for Claude Code. One MCP server, multiple typed corpora (vault / code / plans / docs / research / project-map), unified cross-corpus knowledge graph, conditional tool registration, in-process drift detection, and human↔code translation. Rebrand of `semantic-sidekick` at v1.0.0 — see CHANGELOG for migration.",
-  "version": "1.0.1",
+  "version": "1.2.2",
   "author": {
     "name": "TheGlitchKing",
     "email": "theglitchking@users.noreply.github.com"
   },
   "license": "MIT",
-  "homepage": "https://github.com/TheGlitchKing/semantic-sidekick",
-  "repository": "https://github.com/TheGlitchKing/semantic-sidekick",
+  "homepage": "https://github.com/TheGlitchKing/semantic-memory",
+  "repository": "https://github.com/TheGlitchKing/semantic-memory",
   "keywords": [
     "mcp",
     "memory-layer",

package/CHANGELOG.md

@@ -2,6 +2,13 @@
 
 All notable changes to semantic-memory (formerly semantic-sidekick) will be documented here.
 
+## [1.2.2] - 2026-06-27 — Plugin-aware hook-registration check + manifest version sync
+
+### Fixed
+
+- **`hook_registration` drift no longer false-positives on plugin-style installs.** The check (both the SessionStart fast path in `hooks/vault-context.js` and the CLI `checkHookRegistration` in `src/core/healthcheck.ts`) only inspected the project's `.claude/settings.json`. When semantic-memory is installed as a Claude Code plugin, its SessionStart/UserPromptSubmit/Stop hooks live in the plugin's own `hooks/hooks.json` (resolved via `CLAUDE_PLUGIN_ROOT`) and fire correctly, so the check warned about "missing" hooks that were in fact registered. Both sites now treat events declared in the plugin's `hooks/hooks.json` as registered. Npm-dependency installs (no `CLAUDE_PLUGIN_ROOT`) are unaffected and still require the hooks in `settings.json`.
+- **Plugin manifest version sync.** `.claude-plugin/plugin.json` was frozen at `1.0.1` while `package.json`, git tags, and `marketplace.json` advanced — Claude Code reads the plugin version from `plugin.json`, so `claude plugin update` always reported "already at latest (1.0.1)" and never pulled newer code. Bumped `plugin.json` to match, and corrected its stale `homepage`/`repository` URLs (they pointed at the old `semantic-sidekick` repo).
+
 ## [1.2.1] - 2026-06-11 — Capture-cue false-positive fixes
 
 Fixes two classes of false positives in the Stop-hook capture nudge (`hooks/vault-context.js`), where the cue scanner over-fired and asked to synthesize moments that carried no new knowledge.

package/dist/{chunk-EVAJGOCB.js → chunk-UQSASB7Q.js}

@@ -4,7 +4,7 @@ import {
 
 // src/core/healthcheck.ts
 import { readFile, writeFile, mkdir } from "fs/promises";
-import { existsSync } from "fs";
+import { existsSync, readFileSync } from "fs";
 import { join } from "path";
 import { homedir } from "os";
 var CACHE_TTL_MS = 5 * 60 * 1e3;
@@ -123,6 +123,19 @@ async function checkMcpJsonEntry(projectRoot) {
   }
   return { check: "mcp_json_entry", severity: "ok", summary: ".mcp.json server entry present" };
 }
+function pluginRegisteredHookEvents() {
+  try {
+    const root = process.env.CLAUDE_PLUGIN_ROOT;
+    if (!root) return [];
+    const hooksPath = join(root, "hooks", "hooks.json");
+    if (!existsSync(hooksPath)) return [];
+    const data = JSON.parse(readFileSync(hooksPath, "utf-8"));
+    const hooks = data?.hooks ?? {};
+    return Object.keys(hooks).filter((e) => Array.isArray(hooks[e]) && hooks[e].length > 0);
+  } catch {
+    return [];
+  }
+}
 async function checkHookRegistration(projectRoot) {
   const settings = join(projectRoot, ".claude", "settings.json");
   if (!existsSync(settings)) return null;
@@ -130,10 +143,12 @@ async function checkHookRegistration(projectRoot) {
     const data = JSON.parse(await readFile(settings, "utf-8"));
     const hooks = data?.hooks ?? {};
     const required = ["SessionStart", "UserPromptSubmit", "Stop"];
+    const pluginEvents = pluginRegisteredHookEvents();
     const missing = [];
     for (const event of required) {
       const arr = hooks[event];
-      if (!Array.isArray(arr) || arr.length === 0) missing.push(event);
+      const inSettings = Array.isArray(arr) && arr.length > 0;
+      if (!inSettings && !pluginEvents.includes(event)) missing.push(event);
     }
     if (missing.length > 0) {
       return {
@@ -294,4 +309,4 @@ export {
   filterToDrift,
   formatDriftBanner
 };
-//# sourceMappingURL=chunk-EVAJGOCB.js.map
+//# sourceMappingURL=chunk-UQSASB7Q.js.map

package/dist/chunk-UQSASB7Q.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/healthcheck.ts"],"sourcesContent":["import { readFile, writeFile, mkdir, stat } from \"node:fs/promises\";\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { join, basename } from \"node:path\";\nimport { createHash } from \"node:crypto\";\nimport { homedir } from \"node:os\";\nimport { lintVault } from \"./lint.js\";\nimport { deriveProjectRoot } from \"./session.js\";\n\nexport type Tier = \"fast\" | \"slow\" | \"all\";\nexport type Severity = \"ok\" | \"warn\" | \"error\";\n\nexport interface DriftFinding {\n  check: string;\n  severity: Severity;\n  summary: string;\n  detail?: string;\n  fixable_via?: \"skill-link\" | \"mcp-reconcile\" | \"regenerate-contract\" | \"reindex\" | \"none\";\n}\n\nexport interface HealthcheckResult {\n  tier_run: Tier;\n  ran_at: string;\n  duration_ms: number;\n  findings: DriftFinding[];\n  counts: { ok: number; warn: number; error: number };\n  cached?: boolean;\n}\n\nexport interface HealthcheckOptions {\n  projectRoot: string;\n  /** Vault path. When omitted, derived from projectRoot's .claude/.vault. */\n  vaultPath?: string;\n  tier?: Tier;\n  /** Cache file path. Default: <projectRoot>/.claude/.semantic-memory/healthcheck-cache.json */\n  cachePath?: string;\n  /** Force re-run even if cache is <5 minutes old. */\n  force?: boolean;\n  /** Override \"now\" — used by tests. */\n  nowMs?: number;\n}\n\nconst CACHE_TTL_MS = 5 * 60 * 1000;\n\n/**\n * Run the drift-detection healthcheck.\n *\n *  - Fast tier: cheap file-system probes (~ms each). Plugin version, skill manifests,\n *    .mcp.json registration, hook registration, index freshness, session staleness,\n *    AGENTS.md managed-block sha. All independent, run in parallel. Total budget: <100ms\n *    on a representative install.\n *  - Slow tier: full vault lint. Adds tens of seconds on large vaults — invoked by\n *    explicit /healthcheck, never by the SessionStart auto path.\n *  - Cache: when force=false and the cache file is <5min old, return the cached result.\n *\n * Fail-open: any individual check that throws produces a `severity: \"warn\"` finding\n * with the error message; never propagates.\n */\nexport async function runHealthcheck(opts: HealthcheckOptions): Promise<HealthcheckResult> {\n  const start = (opts.nowMs ?? Date.now());\n  const tier: Tier = opts.tier ?? \"fast\";\n  const cachePath = opts.cachePath ?? join(opts.projectRoot, \".claude\", \".semantic-memory\", \"healthcheck-cache.json\");\n\n  if (!opts.force && existsSync(cachePath)) {\n    try {\n      const raw = await readFile(cachePath, \"utf-8\");\n      const cached = JSON.parse(raw) as HealthcheckResult & { ran_at_ms: number };\n      if (cached.tier_run === tier && start - cached.ran_at_ms < CACHE_TTL_MS) {\n        return { ...cached, cached: true };\n      }\n    } catch {\n      // ignore corrupt cache; will overwrite below\n    }\n  }\n\n  const findings = tier === \"fast\" ? await runFastTier(opts) : tier === \"slow\" ? await runSlowTier(opts) : [...(await runFastTier(opts)), ...(await runSlowTier(opts))];\n\n  const counts = countBySeverity(findings);\n  const ranAt = new Date(start).toISOString();\n  const result: HealthcheckResult = {\n    tier_run: tier,\n    ran_at: ranAt,\n    duration_ms: Date.now() - start,\n    findings,\n    counts,\n  };\n\n  // Persist cache (best-effort; failure is non-fatal).\n  try {\n    await mkdir(join(opts.projectRoot, \".claude\", \".semantic-memory\"), { recursive: true });\n    await writeFile(cachePath, JSON.stringify({ ...result, ran_at_ms: start }, null, 2), \"utf-8\");\n  } catch {\n    // never let cache write block the result\n  }\n\n  return result;\n}\n\n/**\n * Surface filter — return findings with severity >= warn. Used by the SessionStart hook\n * to decide whether to emit anything at all.\n */\nexport function filterToDrift(result: HealthcheckResult): DriftFinding[] {\n  return result.findings.filter((f) => f.severity !== \"ok\");\n}\n\nfunction countBySeverity(findings: DriftFinding[]): { ok: number; warn: number; error: number } {\n  const counts = { ok: 0, warn: 0, error: 0 };\n  for (const f of findings) counts[f.severity]++;\n  return counts;\n}\n\nasync function runFastTier(opts: HealthcheckOptions): Promise<DriftFinding[]> {\n  const checks: Promise<DriftFinding | null>[] = [\n    checkPluginVersion(opts.projectRoot),\n    checkMcpJsonEntry(opts.projectRoot),\n    checkHookRegistration(opts.projectRoot),\n    checkIndexFreshness(opts.projectRoot, opts.vaultPath),\n    checkSessionStaleness(opts.projectRoot),\n    checkAgentsContract(opts.projectRoot),\n    checkLegacyStateFiles(opts.projectRoot),\n    ...(await skillManifestChecks(opts.projectRoot)),\n  ];\n  const results = await Promise.all(checks.map((p) => p.catch((err) => failOpenWarn(err))));\n  return results.filter((r): r is DriftFinding => r !== null);\n}\n\nasync function runSlowTier(opts: HealthcheckOptions): Promise<DriftFinding[]> {\n  const findings: DriftFinding[] = [];\n  if (opts.vaultPath && existsSync(opts.vaultPath)) {\n    try {\n      const report = await lintVault(opts.vaultPath);\n      const total = report.findings.length;\n      if (total === 0) {\n        findings.push({ check: \"lint_vault\", severity: \"ok\", summary: `vault lint clean (${report.counts.filesLinted} files)` });\n      } else {\n        findings.push({\n          check: \"lint_vault\",\n          severity: report.counts.errors > 0 ? \"error\" : \"warn\",\n          summary: `vault lint: ${total} findings (errors=${report.counts.errors}, warnings=${report.counts.warnings})`,\n          detail: `Run \\`lint_vault\\` for the full report. Many lint findings need human review (stale notes, broken wikilinks).`,\n        });\n      }\n    } catch (err: any) {\n      findings.push({ check: \"lint_vault\", severity: \"warn\", summary: `lint_vault threw: ${err?.message ?? err}` });\n    }\n  }\n  return findings;\n}\n\nfunction failOpenWarn(err: unknown): DriftFinding {\n  return {\n    check: \"internal\",\n    severity: \"warn\",\n    summary: `healthcheck internal error: ${err instanceof Error ? err.message : String(err)}`,\n  };\n}\n\n// --- individual checks ---\n\nasync function checkPluginVersion(projectRoot: string): Promise<DriftFinding | null> {\n  const pkgPaths = [\n    join(projectRoot, \"node_modules\", \"@theglitchking\", \"semantic-memory\", \"package.json\"),\n    join(projectRoot, \"node_modules\", \"@theglitchking\", \"semantic-sidekick\", \"package.json\"),\n  ];\n  for (const p of pkgPaths) {\n    if (!existsSync(p)) continue;\n    try {\n      const installed = JSON.parse(await readFile(p, \"utf-8\"));\n      if (typeof installed?.version === \"string\") {\n        return { check: \"plugin_version\", severity: \"ok\", summary: `installed=${installed.version}` };\n      }\n    } catch {\n      // continue to next candidate\n    }\n  }\n  return null; // no installation present — not a drift event for non-npm dev environments\n}\n\nasync function checkMcpJsonEntry(projectRoot: string): Promise<DriftFinding | null> {\n  const mcpPath = join(projectRoot, \".mcp.json\");\n  if (!existsSync(mcpPath)) return null; // no .mcp.json — fine for dev\n  const data = JSON.parse(await readFile(mcpPath, \"utf-8\"));\n  const servers = data?.mcpServers ?? {};\n  const hasEntry = Object.keys(servers).some((k) => k === \"semantic-vault\" || k === \"semantic-sidekick\" || k === \"semantic-memory\");\n  if (!hasEntry) {\n    return {\n      check: \"mcp_json_entry\",\n      severity: \"warn\",\n      summary: \".mcp.json present but no semantic-memory/sidekick/vault server entry\",\n      fixable_via: \"mcp-reconcile\",\n    };\n  }\n  return { check: \"mcp_json_entry\", severity: \"ok\", summary: \".mcp.json server entry present\" };\n}\n\n// Events the plugin registers through its own hooks/hooks.json (resolved via\n// CLAUDE_PLUGIN_ROOT). On a plugin-style install these live in the plugin, not\n// the project's .claude/settings.json, so they must count as registered.\nfunction pluginRegisteredHookEvents(): string[] {\n  try {\n    const root = process.env.CLAUDE_PLUGIN_ROOT;\n    if (!root) return [];\n    const hooksPath = join(root, \"hooks\", \"hooks.json\");\n    if (!existsSync(hooksPath)) return [];\n    const data = JSON.parse(readFileSync(hooksPath, \"utf-8\"));\n    const hooks = data?.hooks ?? {};\n    return Object.keys(hooks).filter((e) => Array.isArray(hooks[e]) && hooks[e].length > 0);\n  } catch {\n    return [];\n  }\n}\n\nasync function checkHookRegistration(projectRoot: string): Promise<DriftFinding | null> {\n  const settings = join(projectRoot, \".claude\", \"settings.json\");\n  if (!existsSync(settings)) return null;\n  try {\n    const data = JSON.parse(await readFile(settings, \"utf-8\"));\n    const hooks = data?.hooks ?? {};\n    const required = [\"SessionStart\", \"UserPromptSubmit\", \"Stop\"];\n    const pluginEvents = pluginRegisteredHookEvents();\n    const missing: string[] = [];\n    for (const event of required) {\n      const arr = hooks[event];\n      const inSettings = Array.isArray(arr) && arr.length > 0;\n      if (!inSettings && !pluginEvents.includes(event)) missing.push(event);\n    }\n    if (missing.length > 0) {\n      return {\n        check: \"hook_registration\",\n        severity: \"warn\",\n        summary: `missing hook registrations: ${missing.join(\", \")}`,\n        detail: `Run \\`/relink\\` or reinstall the plugin to refresh hook registrations.`,\n      };\n    }\n    return { check: \"hook_registration\", severity: \"ok\", summary: \"all 3 hook events registered\" };\n  } catch (err: any) {\n    return failOpenWarn(err);\n  }\n}\n\nasync function checkIndexFreshness(projectRoot: string, vaultPath?: string): Promise<DriftFinding | null> {\n  const vault = vaultPath ?? defaultVaultPath(projectRoot);\n  if (!vault || !existsSync(vault)) return null;\n  const indexDir = join(vault, \".semantic-sidekick-index\");\n  const meta = join(indexDir, \"meta.json\");\n  if (!existsSync(meta)) {\n    return {\n      check: \"index_freshness\",\n      severity: \"warn\",\n      summary: \"no index built yet\",\n      detail: \"Run `reindex` to build the vector index.\",\n      fixable_via: \"reindex\",\n    };\n  }\n  try {\n    const data = JSON.parse(await readFile(meta, \"utf-8\"));\n    if (typeof data.indexedAt === \"string\") {\n      return { check: \"index_freshness\", severity: \"ok\", summary: `last reindex ${data.indexedAt}` };\n    }\n  } catch {\n    // ignore\n  }\n  return null;\n}\n\nasync function checkSessionStaleness(projectRoot: string): Promise<DriftFinding | null> {\n  const sessionPath = join(projectRoot, \".claude\", \".semantic-memory\", \"session.json\");\n  if (!existsSync(sessionPath)) return null;\n  try {\n    const state = JSON.parse(await readFile(sessionPath, \"utf-8\"));\n    if (state?.closed_at) return null;\n    const last = state?.last_activity_at;\n    if (typeof last !== \"string\") return null;\n    const ageMs = Date.now() - new Date(last).getTime();\n    if (ageMs > 24 * 60 * 60 * 1000) {\n      return {\n        check: \"session_staleness\",\n        severity: \"warn\",\n        summary: `session ${state.id} stale (>${Math.round(ageMs / (60 * 60 * 1000))}h since activity)`,\n        detail: `Either resume the session (run session_run / session_finish) or remove .claude/.semantic-memory/session.json to abandon it.`,\n      };\n    }\n    return { check: \"session_staleness\", severity: \"ok\", summary: `session ${state.id} active` };\n  } catch {\n    return null;\n  }\n}\n\nasync function checkLegacyStateFiles(projectRoot: string): Promise<DriftFinding | null> {\n  // Detect v1.1-and-earlier state files at .claude/.sidekick-*. v1.2 moved these to\n  // .claude/.semantic-memory/. The hook still reads them via fallback for backwards-\n  // compat, but they should be migrated explicitly so the legacy paths stop existing.\n  const legacy = [\n    \".sidekick-mode\",\n    \".sidekick-fingerprints.json\",\n    \".sidekick-capture-pending.json\",\n  ];\n  const present: string[] = [];\n  for (const name of legacy) {\n    if (existsSync(join(projectRoot, \".claude\", name))) {\n      present.push(name);\n    }\n  }\n  if (present.length === 0) {\n    return { check: \"legacy_state_files\", severity: \"ok\", summary: \"no legacy state files\" };\n  }\n  return {\n    check: \"legacy_state_files\",\n    severity: \"warn\",\n    summary: `${present.length} legacy state file${present.length === 1 ? \"\" : \"s\"} at .claude/.sidekick-*`,\n    detail:\n      `Files: ${present.join(\", \")}. Run \\`bin/semantic-memory migrate-state\\` to move them under .claude/.semantic-memory/. ` +\n      `These files are still being read for backwards-compat through v1.x; the legacy fallback is removed in v2.0.`,\n    fixable_via: \"none\",\n  };\n}\n\nasync function checkAgentsContract(projectRoot: string): Promise<DriftFinding | null> {\n  const path = join(projectRoot, \"AGENTS.md\");\n  if (!existsSync(path)) return null; // optional artifact\n  try {\n    const raw = await readFile(path, \"utf-8\");\n    const begin = raw.indexOf(\"<!-- semantic-memory:begin contract -->\");\n    const end = raw.indexOf(\"<!-- semantic-memory:end contract -->\");\n    if (begin === -1 || end === -1) {\n      return {\n        check: \"agents_contract\",\n        severity: \"warn\",\n        summary: \"AGENTS.md exists but lacks managed-block markers\",\n        detail: \"Either move custom content to a Local Notes section, or delete AGENTS.md and run `regenerate_contract` to bootstrap.\",\n        fixable_via: \"regenerate-contract\",\n      };\n    }\n    return { check: \"agents_contract\", severity: \"ok\", summary: \"AGENTS.md managed block intact\" };\n  } catch {\n    return null;\n  }\n}\n\nasync function skillManifestChecks(projectRoot: string): Promise<Promise<DriftFinding | null>[]> {\n  const home = homedir();\n  const targets = [\n    { agent: \"claude\", path: join(home, \".claude\", \"skills\") },\n    { agent: \"codex\", path: join(home, \".codex\", \"skills\") },\n    { agent: \"copilot\", path: join(home, \".copilot\", \"skills\") },\n    { agent: \"pi\", path: join(home, \".pi\", \"agent\", \"skills\") },\n    { agent: \"claude-local\", path: join(projectRoot, \".claude\", \"skills\") },\n  ];\n  const out: Promise<DriftFinding | null>[] = [];\n  for (const t of targets) {\n    out.push(checkOneSkillManifest(t.agent, t.path));\n  }\n  return out;\n}\n\nasync function checkOneSkillManifest(agentLabel: string, skillsRoot: string): Promise<DriftFinding | null> {\n  const manifestPath = join(skillsRoot, \".semantic-memory-skill-manifest.json\");\n  if (!existsSync(manifestPath)) return null; // not installed for this agent — fine\n  try {\n    const raw = await readFile(manifestPath, \"utf-8\");\n    const manifest = JSON.parse(raw);\n    if (typeof manifest?.installed_at !== \"string\") return null;\n    const age = Date.now() - new Date(manifest.installed_at).getTime();\n    // Manifest itself is the source of truth; deeper sha-recheck happens via slow tier\n    return {\n      check: `skill_manifest:${agentLabel}`,\n      severity: \"ok\",\n      summary: `${agentLabel} skills installed v${manifest.version} (${Math.round(age / (24 * 60 * 60 * 1000))}d ago)`,\n    };\n  } catch {\n    return null;\n  }\n}\n\nfunction defaultVaultPath(projectRoot: string): string {\n  return join(projectRoot, \".claude\", \".vault\");\n}\n\n/**\n * Format a drift summary for the SessionStart hook. Returns the text to inject as\n * additionalContext, or an empty string when there's nothing to surface.\n */\nexport function formatDriftBanner(result: HealthcheckResult): string {\n  const drift = filterToDrift(result);\n  if (drift.length === 0) return \"\";\n  const lines = [\n    `<vault-drift count=\"${drift.length}\">`,\n    `⚠️  semantic-memory: ${drift.length} drift issue${drift.length === 1 ? \"\" : \"s\"} detected`,\n  ];\n  for (const f of drift.slice(0, 5)) {\n    const sev = f.severity === \"error\" ? \"✗\" : \"⚠\";\n    lines.push(`  ${sev} ${f.check}: ${f.summary}`);\n  }\n  if (drift.length > 5) lines.push(`  …and ${drift.length - 5} more`);\n  lines.push(`Run /healthcheck for details, or /healthcheck --fix to auto-fix safe items.`);\n  lines.push(`</vault-drift>`);\n  return 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package/dist/cli/index.js

@@ -778,7 +778,7 @@ ${r2.stderr?.toString() || ""}`);
 });
 var driftHealthcheckActionPostprocess = async (opts) => {
   try {
-    const { runHealthcheck, formatDriftBanner } = await import("../healthcheck-7YOPNDXN.js");
+    const { runHealthcheck, formatDriftBanner } = await import("../healthcheck-E4GI5RMZ.js");
     const projectRoot = process.cwd();
     const vaultCandidate = join3(projectRoot, ".claude", ".vault");
     const vaultPath = existsSync3(vaultCandidate) ? vaultCandidate : void 0;

package/dist/core/index.js

@@ -2,7 +2,7 @@ import {
   filterToDrift,
   formatDriftBanner,
   runHealthcheck
-} from "../chunk-EVAJGOCB.js";
+} from "../chunk-UQSASB7Q.js";
 import {
   FrontmatterManager,
   INDEX_FILE,

package/dist/{healthcheck-7YOPNDXN.js → healthcheck-E4GI5RMZ.js}

@@ -2,7 +2,7 @@ import {
   filterToDrift,
   formatDriftBanner,
   runHealthcheck
-} from "./chunk-EVAJGOCB.js";
+} from "./chunk-UQSASB7Q.js";
 import "./chunk-CAN2GWUG.js";
 import "./chunk-E2Z4J4MK.js";
 import "./chunk-PZ5AY32C.js";
@@ -11,4 +11,4 @@ export {
   formatDriftBanner,
   runHealthcheck
 };
-//# sourceMappingURL=healthcheck-7YOPNDXN.js.map
+//# sourceMappingURL=healthcheck-E4GI5RMZ.js.map

package/hooks/vault-context.js

@@ -406,6 +406,25 @@ async function handleSessionStart(projectRoot, vaultPath, cliBin) {
  * Heavy work (full vault lint, code-symbol drift) is reserved for the manual
  * `/healthcheck` command; this auto path stays cheap.
  */
+
+// Events the plugin registers through its own hooks/hooks.json (resolved via
+// CLAUDE_PLUGIN_ROOT). On a plugin-style install these live in the plugin, not
+// the project's .claude/settings.json, so they must count as registered.
+function pluginRegisteredHookEvents() {
+  try {
+    const root = process.env.CLAUDE_PLUGIN_ROOT;
+    if (!root) return [];
+    const hooksPath = join(root, "hooks", "hooks.json");
+    if (!existsSync(hooksPath)) return [];
+    const data = JSON.parse(readFileSync(hooksPath, "utf8"));
+    const hooks = (data && data.hooks) || {};
+    return Object.keys(hooks).filter((e) => Array.isArray(hooks[e]) && hooks[e].length > 0);
+  } catch (e) {
+    debug(`pluginRegisteredHookEvents threw: ${e.message}`);
+    return [];
+  }
+}
+
 async function fastDriftCheck(projectRoot) {
   const findings = [];
   // .mcp.json
@@ -426,7 +445,13 @@ async function fastDriftCheck(projectRoot) {
       const data = JSON.parse(readFileSync(settings, "utf8"));
       const hooks = (data && data.hooks) || {};
       const required = ["SessionStart", "UserPromptSubmit", "Stop"];
-      const missing = required.filter((e) => !Array.isArray(hooks[e]) || hooks[e].length === 0);
+      // Plugin-style installs register these via the plugin's own hooks/hooks.json
+      // (resolved through CLAUDE_PLUGIN_ROOT), not the project settings.json. Count
+      // those as registered so the check doesn't false-positive on plugin installs.
+      const pluginEvents = pluginRegisteredHookEvents();
+      const missing = required.filter(
+        (e) => (!Array.isArray(hooks[e]) || hooks[e].length === 0) && !pluginEvents.includes(e)
+      );
       if (missing.length > 0) findings.push({ check: "hook_registration", summary: `missing hook events: ${missing.join(", ")}` });
     }
   } catch (e) { debug(`hook check threw: ${e.message}`); }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@theglitchking/semantic-memory",
-  "version": "1.2.1",
+  "version": "1.2.2",
   "description": "Unified memory-layer plugin for Claude Code. One MCP server, multiple typed corpora (vault, code, plans, docs, research, project-map), unified cross-corpus knowledge graph, conditional tool registration, in-process drift detection, and human↔code translation. Rebrand of @theglitchking/semantic-sidekick at v1.0 — see CHANGELOG for migration.",
   "type": "module",
   "main": "./dist/core/index.js",

package/dist/chunk-EVAJGOCB.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/core/healthcheck.ts"],"sourcesContent":["import { readFile, writeFile, mkdir, stat } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, basename } from \"node:path\";\nimport { createHash } from \"node:crypto\";\nimport { homedir } from \"node:os\";\nimport { lintVault } from \"./lint.js\";\nimport { deriveProjectRoot } from \"./session.js\";\n\nexport type Tier = \"fast\" | \"slow\" | \"all\";\nexport type Severity = \"ok\" | \"warn\" | \"error\";\n\nexport interface DriftFinding {\n  check: string;\n  severity: Severity;\n  summary: string;\n  detail?: string;\n  fixable_via?: \"skill-link\" | \"mcp-reconcile\" | \"regenerate-contract\" | \"reindex\" | \"none\";\n}\n\nexport interface HealthcheckResult {\n  tier_run: Tier;\n  ran_at: string;\n  duration_ms: number;\n  findings: DriftFinding[];\n  counts: { ok: number; warn: number; error: number };\n  cached?: boolean;\n}\n\nexport interface HealthcheckOptions {\n  projectRoot: string;\n  /** Vault path. When omitted, derived from projectRoot's .claude/.vault. */\n  vaultPath?: string;\n  tier?: Tier;\n  /** Cache file path. Default: <projectRoot>/.claude/.semantic-memory/healthcheck-cache.json */\n  cachePath?: string;\n  /** Force re-run even if cache is <5 minutes old. */\n  force?: boolean;\n  /** Override \"now\" — used by tests. */\n  nowMs?: number;\n}\n\nconst CACHE_TTL_MS = 5 * 60 * 1000;\n\n/**\n * Run the drift-detection healthcheck.\n *\n *  - Fast tier: cheap file-system probes (~ms each). Plugin version, skill manifests,\n *    .mcp.json registration, hook registration, index freshness, session staleness,\n *    AGENTS.md managed-block sha. All independent, run in parallel. Total budget: <100ms\n *    on a representative install.\n *  - Slow tier: full vault lint. Adds tens of seconds on large vaults — invoked by\n *    explicit /healthcheck, never by the SessionStart auto path.\n *  - Cache: when force=false and the cache file is <5min old, return the cached result.\n *\n * Fail-open: any individual check that throws produces a `severity: \"warn\"` finding\n * with the error message; never propagates.\n */\nexport async function runHealthcheck(opts: HealthcheckOptions): Promise<HealthcheckResult> {\n  const start = (opts.nowMs ?? Date.now());\n  const tier: Tier = opts.tier ?? \"fast\";\n  const cachePath = opts.cachePath ?? join(opts.projectRoot, \".claude\", \".semantic-memory\", \"healthcheck-cache.json\");\n\n  if (!opts.force && existsSync(cachePath)) {\n    try {\n      const raw = await readFile(cachePath, \"utf-8\");\n      const cached = JSON.parse(raw) as HealthcheckResult & { ran_at_ms: number };\n      if (cached.tier_run === tier && start - cached.ran_at_ms < CACHE_TTL_MS) {\n        return { ...cached, cached: true };\n      }\n    } catch {\n      // ignore corrupt cache; will overwrite below\n    }\n  }\n\n  const findings = tier === \"fast\" ? await runFastTier(opts) : tier === \"slow\" ? await runSlowTier(opts) : [...(await runFastTier(opts)), ...(await runSlowTier(opts))];\n\n  const counts = countBySeverity(findings);\n  const ranAt = new Date(start).toISOString();\n  const result: HealthcheckResult = {\n    tier_run: tier,\n    ran_at: ranAt,\n    duration_ms: Date.now() - start,\n    findings,\n    counts,\n  };\n\n  // Persist cache (best-effort; failure is non-fatal).\n  try {\n    await mkdir(join(opts.projectRoot, \".claude\", \".semantic-memory\"), { recursive: true });\n    await writeFile(cachePath, JSON.stringify({ ...result, ran_at_ms: start }, null, 2), \"utf-8\");\n  } catch {\n    // never let cache write block the result\n  }\n\n  return result;\n}\n\n/**\n * Surface filter — return findings with severity >= warn. Used by the SessionStart hook\n * to decide whether to emit anything at all.\n */\nexport function filterToDrift(result: HealthcheckResult): DriftFinding[] {\n  return result.findings.filter((f) => f.severity !== \"ok\");\n}\n\nfunction countBySeverity(findings: DriftFinding[]): { ok: number; warn: number; error: number } {\n  const counts = { ok: 0, warn: 0, error: 0 };\n  for (const f of findings) counts[f.severity]++;\n  return counts;\n}\n\nasync function runFastTier(opts: HealthcheckOptions): Promise<DriftFinding[]> {\n  const checks: Promise<DriftFinding | null>[] = [\n    checkPluginVersion(opts.projectRoot),\n    checkMcpJsonEntry(opts.projectRoot),\n    checkHookRegistration(opts.projectRoot),\n    checkIndexFreshness(opts.projectRoot, opts.vaultPath),\n    checkSessionStaleness(opts.projectRoot),\n    checkAgentsContract(opts.projectRoot),\n    checkLegacyStateFiles(opts.projectRoot),\n    ...(await skillManifestChecks(opts.projectRoot)),\n  ];\n  const results = await Promise.all(checks.map((p) => p.catch((err) => failOpenWarn(err))));\n  return results.filter((r): r is DriftFinding => r !== null);\n}\n\nasync function runSlowTier(opts: HealthcheckOptions): Promise<DriftFinding[]> {\n  const findings: DriftFinding[] = [];\n  if (opts.vaultPath && existsSync(opts.vaultPath)) {\n    try {\n      const report = await lintVault(opts.vaultPath);\n      const total = report.findings.length;\n      if (total === 0) {\n        findings.push({ check: \"lint_vault\", severity: \"ok\", summary: `vault lint clean (${report.counts.filesLinted} files)` });\n      } else {\n        findings.push({\n          check: \"lint_vault\",\n          severity: report.counts.errors > 0 ? \"error\" : \"warn\",\n          summary: `vault lint: ${total} findings (errors=${report.counts.errors}, warnings=${report.counts.warnings})`,\n          detail: `Run \\`lint_vault\\` for the full report. Many lint findings need human review (stale notes, broken wikilinks).`,\n        });\n      }\n    } catch (err: any) {\n      findings.push({ check: \"lint_vault\", severity: \"warn\", summary: `lint_vault threw: ${err?.message ?? err}` });\n    }\n  }\n  return findings;\n}\n\nfunction failOpenWarn(err: unknown): DriftFinding {\n  return {\n    check: \"internal\",\n    severity: \"warn\",\n    summary: `healthcheck internal error: ${err instanceof Error ? err.message : String(err)}`,\n  };\n}\n\n// --- individual checks ---\n\nasync function checkPluginVersion(projectRoot: string): Promise<DriftFinding | null> {\n  const pkgPaths = [\n    join(projectRoot, \"node_modules\", \"@theglitchking\", \"semantic-memory\", \"package.json\"),\n    join(projectRoot, \"node_modules\", \"@theglitchking\", \"semantic-sidekick\", \"package.json\"),\n  ];\n  for (const p of pkgPaths) {\n    if (!existsSync(p)) continue;\n    try {\n      const installed = JSON.parse(await readFile(p, \"utf-8\"));\n      if (typeof installed?.version === \"string\") {\n        return { check: \"plugin_version\", severity: \"ok\", summary: `installed=${installed.version}` };\n      }\n    } catch {\n      // continue to next candidate\n    }\n  }\n  return null; // no installation present — not a drift event for non-npm dev environments\n}\n\nasync function checkMcpJsonEntry(projectRoot: string): Promise<DriftFinding | null> {\n  const mcpPath = join(projectRoot, \".mcp.json\");\n  if (!existsSync(mcpPath)) return null; // no .mcp.json — fine for dev\n  const data = JSON.parse(await readFile(mcpPath, \"utf-8\"));\n  const servers = data?.mcpServers ?? {};\n  const hasEntry = Object.keys(servers).some((k) => k === \"semantic-vault\" || k === \"semantic-sidekick\" || k === \"semantic-memory\");\n  if (!hasEntry) {\n    return {\n      check: \"mcp_json_entry\",\n      severity: \"warn\",\n      summary: \".mcp.json present but no semantic-memory/sidekick/vault server entry\",\n      fixable_via: \"mcp-reconcile\",\n    };\n  }\n  return { check: \"mcp_json_entry\", severity: \"ok\", summary: \".mcp.json server entry present\" };\n}\n\nasync function checkHookRegistration(projectRoot: string): Promise<DriftFinding | null> {\n  const settings = join(projectRoot, \".claude\", \"settings.json\");\n  if (!existsSync(settings)) return null;\n  try {\n    const data = JSON.parse(await readFile(settings, \"utf-8\"));\n    const hooks = data?.hooks ?? {};\n    const required = [\"SessionStart\", \"UserPromptSubmit\", \"Stop\"];\n    const missing: string[] = [];\n    for (const event of required) {\n      const arr = hooks[event];\n      if (!Array.isArray(arr) || arr.length === 0) missing.push(event);\n    }\n    if (missing.length > 0) {\n      return {\n        check: \"hook_registration\",\n        severity: \"warn\",\n        summary: `missing hook registrations: ${missing.join(\", \")}`,\n        detail: `Run \\`/relink\\` or reinstall the plugin to refresh hook registrations.`,\n      };\n    }\n    return { check: \"hook_registration\", severity: \"ok\", summary: \"all 3 hook events registered\" };\n  } catch (err: any) {\n    return failOpenWarn(err);\n  }\n}\n\nasync function checkIndexFreshness(projectRoot: string, vaultPath?: string): Promise<DriftFinding | null> {\n  const vault = vaultPath ?? defaultVaultPath(projectRoot);\n  if (!vault || !existsSync(vault)) return null;\n  const indexDir = join(vault, \".semantic-sidekick-index\");\n  const meta = join(indexDir, \"meta.json\");\n  if (!existsSync(meta)) {\n    return {\n      check: \"index_freshness\",\n      severity: \"warn\",\n      summary: \"no index built yet\",\n      detail: \"Run `reindex` to build the vector index.\",\n      fixable_via: \"reindex\",\n    };\n  }\n  try {\n    const data = JSON.parse(await readFile(meta, \"utf-8\"));\n    if (typeof data.indexedAt === \"string\") {\n      return { check: \"index_freshness\", severity: \"ok\", summary: `last reindex ${data.indexedAt}` };\n    }\n  } catch {\n    // ignore\n  }\n  return null;\n}\n\nasync function checkSessionStaleness(projectRoot: string): Promise<DriftFinding | null> {\n  const sessionPath = join(projectRoot, \".claude\", \".semantic-memory\", \"session.json\");\n  if (!existsSync(sessionPath)) return null;\n  try {\n    const state = JSON.parse(await readFile(sessionPath, \"utf-8\"));\n    if (state?.closed_at) return null;\n    const last = state?.last_activity_at;\n    if (typeof last !== \"string\") return null;\n    const ageMs = Date.now() - new Date(last).getTime();\n    if (ageMs > 24 * 60 * 60 * 1000) {\n      return {\n        check: \"session_staleness\",\n        severity: \"warn\",\n        summary: `session ${state.id} stale (>${Math.round(ageMs / (60 * 60 * 1000))}h since activity)`,\n        detail: `Either resume the session (run session_run / session_finish) or remove .claude/.semantic-memory/session.json to abandon it.`,\n      };\n    }\n    return { check: \"session_staleness\", severity: \"ok\", summary: `session ${state.id} active` };\n  } catch {\n    return null;\n  }\n}\n\nasync function checkLegacyStateFiles(projectRoot: string): Promise<DriftFinding | null> {\n  // Detect v1.1-and-earlier state files at .claude/.sidekick-*. v1.2 moved these to\n  // .claude/.semantic-memory/. The hook still reads them via fallback for backwards-\n  // compat, but they should be migrated explicitly so the legacy paths stop existing.\n  const legacy = [\n    \".sidekick-mode\",\n    \".sidekick-fingerprints.json\",\n    \".sidekick-capture-pending.json\",\n  ];\n  const present: string[] = [];\n  for (const name of legacy) {\n    if (existsSync(join(projectRoot, \".claude\", name))) {\n      present.push(name);\n    }\n  }\n  if (present.length === 0) {\n    return { check: \"legacy_state_files\", severity: \"ok\", summary: \"no legacy state files\" };\n  }\n  return {\n    check: \"legacy_state_files\",\n    severity: \"warn\",\n    summary: `${present.length} legacy state file${present.length === 1 ? \"\" : \"s\"} at .claude/.sidekick-*`,\n    detail:\n      `Files: ${present.join(\", \")}. Run \\`bin/semantic-memory migrate-state\\` to move them under .claude/.semantic-memory/. ` +\n      `These files are still being read for backwards-compat through v1.x; the legacy fallback is removed in v2.0.`,\n    fixable_via: \"none\",\n  };\n}\n\nasync function checkAgentsContract(projectRoot: string): Promise<DriftFinding | null> {\n  const path = join(projectRoot, \"AGENTS.md\");\n  if (!existsSync(path)) return null; // optional artifact\n  try {\n    const raw = await readFile(path, \"utf-8\");\n    const begin = raw.indexOf(\"<!-- semantic-memory:begin contract -->\");\n    const end = raw.indexOf(\"<!-- semantic-memory:end contract -->\");\n    if (begin === -1 || end === -1) {\n      return {\n        check: \"agents_contract\",\n        severity: \"warn\",\n        summary: \"AGENTS.md exists but lacks managed-block markers\",\n        detail: \"Either move custom content to a Local Notes section, or delete AGENTS.md and run `regenerate_contract` to bootstrap.\",\n        fixable_via: \"regenerate-contract\",\n      };\n    }\n    return { check: \"agents_contract\", severity: \"ok\", summary: \"AGENTS.md managed block intact\" };\n  } catch {\n    return null;\n  }\n}\n\nasync function skillManifestChecks(projectRoot: string): Promise<Promise<DriftFinding | null>[]> {\n  const home = homedir();\n  const targets = [\n    { agent: \"claude\", path: join(home, \".claude\", \"skills\") },\n    { agent: \"codex\", path: join(home, \".codex\", \"skills\") },\n    { agent: \"copilot\", path: join(home, \".copilot\", \"skills\") },\n    { agent: \"pi\", path: join(home, \".pi\", \"agent\", \"skills\") },\n    { agent: \"claude-local\", path: join(projectRoot, \".claude\", \"skills\") },\n  ];\n  const out: Promise<DriftFinding | null>[] = [];\n  for (const t of targets) {\n    out.push(checkOneSkillManifest(t.agent, t.path));\n  }\n  return out;\n}\n\nasync function checkOneSkillManifest(agentLabel: string, skillsRoot: string): Promise<DriftFinding | null> {\n  const manifestPath = join(skillsRoot, \".semantic-memory-skill-manifest.json\");\n  if (!existsSync(manifestPath)) return null; // not installed for this agent — fine\n  try {\n    const raw = await readFile(manifestPath, \"utf-8\");\n    const manifest = JSON.parse(raw);\n    if (typeof manifest?.installed_at !== \"string\") return null;\n    const age = Date.now() - new Date(manifest.installed_at).getTime();\n    // Manifest itself is the source of truth; deeper sha-recheck happens via slow tier\n    return {\n      check: `skill_manifest:${agentLabel}`,\n      severity: \"ok\",\n      summary: `${agentLabel} skills installed v${manifest.version} (${Math.round(age / (24 * 60 * 60 * 1000))}d ago)`,\n    };\n  } catch {\n    return null;\n  }\n}\n\nfunction defaultVaultPath(projectRoot: string): string {\n  return join(projectRoot, \".claude\", \".vault\");\n}\n\n/**\n * Format a drift summary for the SessionStart hook. Returns the text to inject as\n * additionalContext, or an empty string when there's nothing to surface.\n */\nexport function formatDriftBanner(result: HealthcheckResult): string {\n  const drift = filterToDrift(result);\n  if (drift.length === 0) return \"\";\n  const lines = [\n    `<vault-drift count=\"${drift.length}\">`,\n    `⚠️  semantic-memory: ${drift.length} drift issue${drift.length === 1 ? \"\" : \"s\"} detected`,\n  ];\n  for (const f of drift.slice(0, 5)) {\n    const sev = f.severity === \"error\" ? \"✗\" : \"⚠\";\n    lines.push(`  ${sev} ${f.check}: ${f.summary}`);\n  }\n  if (drift.length > 5) lines.push(`  …and ${drift.length - 5} more`);\n  lines.push(`Run /healthcheck for details, or /healthcheck --fix to auto-fix safe items.`);\n  lines.push(`</vault-drift>`);\n  return 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