@the-cascade-protocol/cli 0.2.0

package/dist/commands/conformance.js

@@ -0,0 +1,348 @@
+/**
+ * cascade conformance run
+ *
+ * Run conformance test suite against a CLI command or self-test.
+ *
+ * Options:
+ *   --suite <fixtures-dir>    Path to test fixtures directory
+ *   --command "<cmd>"         External command to test
+ *   --self                    Run self-conformance tests
+ *   --json                    Output results as JSON
+ *   --verbose                 Show detailed test output
+ */
+import fs from 'node:fs';
+import path from 'node:path';
+import { loadShapes, validateTurtle } from '../lib/shacl-validator.js';
+import { parseTurtle } from '../lib/turtle-parser.js';
+import { printResult, printError, printVerbose } from '../lib/output.js';
+// ---------------------------------------------------------------------------
+// Fixture loading
+// ---------------------------------------------------------------------------
+/**
+ * Load and parse all `.json` fixture files from the given directory.
+ * Files are sorted by id so output order is deterministic.
+ */
+function loadFixtures(suiteDir) {
+    if (!fs.existsSync(suiteDir)) {
+        throw new Error(`Fixtures directory not found: ${suiteDir}`);
+    }
+    const files = fs
+        .readdirSync(suiteDir)
+        .filter((f) => f.endsWith('.json'))
+        .sort();
+    if (files.length === 0) {
+        throw new Error(`No .json fixture files found in ${suiteDir}`);
+    }
+    const fixtures = [];
+    for (const file of files) {
+        const filePath = path.join(suiteDir, file);
+        const raw = fs.readFileSync(filePath, 'utf-8');
+        const fixture = JSON.parse(raw);
+        fixtures.push(fixture);
+    }
+    return fixtures;
+}
+// ---------------------------------------------------------------------------
+// Self-conformance runner
+// ---------------------------------------------------------------------------
+/**
+ * Run a single fixture in self-conformance mode.
+ *
+ * Positive fixtures (shouldAccept === true):
+ *   - Parse the expected turtle
+ *   - Run SHACL validation
+ *   - PASS if no violations; FAIL otherwise
+ *
+ * Negative fixtures (shouldAccept === false):
+ *   - If turtle is empty: PASS (rejection before serialization)
+ *   - If turtle is non-empty: SHACL validate — PASS if violations found, FAIL if clean
+ */
+function runSelfFixture(fixture, shapesStore, shapeFiles, opts) {
+    const base = {
+        id: fixture.id,
+        description: fixture.description,
+        dataType: fixture.dataType,
+        negative: !fixture.shouldAccept,
+    };
+    const turtle = fixture.expectedOutput.turtle;
+    const validationMode = fixture.expectedOutput.validationMode;
+    try {
+        if (fixture.shouldAccept) {
+            // ---- Positive fixture ----
+            // Step 1: Parse the turtle
+            const parseResult = parseTurtle(turtle);
+            if (!parseResult.success) {
+                return {
+                    ...base,
+                    status: 'failed',
+                    details: `Turtle parse error: ${parseResult.errors.join('; ')}`,
+                };
+            }
+            // Step 2: SHACL validation
+            const validation = validateTurtle(turtle, shapesStore, shapeFiles, fixture.id);
+            if (validationMode === 'shacl-valid') {
+                if (validation.valid) {
+                    printVerbose(`  [${fixture.id}] SHACL valid (${validation.quadCount} quads)`, opts);
+                    return { ...base, status: 'passed', validationDetails: validation };
+                }
+                else {
+                    const violations = validation.results
+                        .filter((r) => r.severity === 'violation')
+                        .map((r) => `${r.shape}.${r.property}: ${r.message}`)
+                        .join('; ');
+                    return {
+                        ...base,
+                        status: 'failed',
+                        details: `SHACL violations: ${violations}`,
+                        validationDetails: validation,
+                    };
+                }
+            }
+            else if (validationMode === 'exact-match') {
+                // Exact-match: for now, verify it parses and is SHACL-valid
+                // Full normalized triple-by-triple equivalence is deferred
+                if (validation.valid) {
+                    printVerbose(`  [${fixture.id}] exact-match: parsed & SHACL valid (full normalization deferred)`, opts);
+                    return { ...base, status: 'passed', validationDetails: validation };
+                }
+                else {
+                    const violations = validation.results
+                        .filter((r) => r.severity === 'violation')
+                        .map((r) => `${r.shape}.${r.property}: ${r.message}`)
+                        .join('; ');
+                    return {
+                        ...base,
+                        status: 'failed',
+                        details: `SHACL violations (exact-match mode): ${violations}`,
+                        validationDetails: validation,
+                    };
+                }
+            }
+            else {
+                return {
+                    ...base,
+                    status: 'error',
+                    details: `Unknown validationMode: ${validationMode}`,
+                };
+            }
+        }
+        else {
+            // ---- Negative fixture ----
+            if (turtle === '') {
+                // Empty turtle means the SDK should reject before serialization — PASS
+                printVerbose(`  [${fixture.id}] negative: empty turtle (pre-serialization rejection)`, opts);
+                return { ...base, status: 'passed' };
+            }
+            // Non-empty turtle: validate and expect violations
+            const parseResult = parseTurtle(turtle);
+            if (!parseResult.success) {
+                // Parse failure on negative fixture = PASS (malformed is invalid)
+                printVerbose(`  [${fixture.id}] negative: turtle parse error (expected)`, opts);
+                return { ...base, status: 'passed', details: 'Turtle parse error (expected for negative fixture)' };
+            }
+            const validation = validateTurtle(turtle, shapesStore, shapeFiles, fixture.id);
+            if (!validation.valid) {
+                // Violations found — PASS for negative fixture
+                const violations = validation.results
+                    .filter((r) => r.severity === 'violation')
+                    .map((r) => `${r.shape}.${r.property}: ${r.message}`)
+                    .join('; ');
+                printVerbose(`  [${fixture.id}] negative: SHACL violations found (expected): ${violations}`, opts);
+                return { ...base, status: 'passed', validationDetails: validation };
+            }
+            else {
+                // No violations — FAIL for negative fixture
+                return {
+                    ...base,
+                    status: 'failed',
+                    details: `Expected SHACL violations but data validated clean. Expected: ${fixture.shaclConstraintViolated ?? 'unspecified'}`,
+                    validationDetails: validation,
+                };
+            }
+        }
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        return {
+            ...base,
+            status: 'error',
+            details: `Unexpected error: ${message}`,
+        };
+    }
+}
+// ---------------------------------------------------------------------------
+// Report generation
+// ---------------------------------------------------------------------------
+/**
+ * Build the aggregate suite report from individual fixture results.
+ */
+function buildReport(suitePath, mode, results) {
+    const byDataType = {};
+    for (const r of results) {
+        if (!byDataType[r.dataType]) {
+            byDataType[r.dataType] = { total: 0, passed: 0, failed: 0, errors: 0 };
+        }
+        const group = byDataType[r.dataType];
+        group.total++;
+        if (r.status === 'passed')
+            group.passed++;
+        else if (r.status === 'failed')
+            group.failed++;
+        else
+            group.errors++;
+    }
+    return {
+        suite: suitePath,
+        mode,
+        total: results.length,
+        passed: results.filter((r) => r.status === 'passed').length,
+        failed: results.filter((r) => r.status === 'failed').length,
+        errors: results.filter((r) => r.status === 'error').length,
+        results,
+        byDataType,
+    };
+}
+/**
+ * Print a human-readable report to stdout.
+ */
+function printHumanReport(report, opts) {
+    console.log('');
+    console.log('Cascade Protocol Conformance Test Suite');
+    console.log('========================================');
+    console.log(`Suite: ${report.suite}`);
+    console.log(`Mode: ${report.mode === 'self' ? 'self-conformance' : report.mode}`);
+    console.log(`Fixtures: ${report.total}`);
+    console.log('');
+    console.log('Running tests...');
+    console.log('');
+    // Group results by dataType, preserving insertion order
+    const dataTypes = [];
+    const grouped = {};
+    for (const r of report.results) {
+        if (!grouped[r.dataType]) {
+            grouped[r.dataType] = [];
+            dataTypes.push(r.dataType);
+        }
+        grouped[r.dataType].push(r);
+    }
+    for (const dt of dataTypes) {
+        const fixtures = grouped[dt];
+        console.log(`  ${dt} (${fixtures.length} fixtures)`);
+        for (const r of fixtures) {
+            const icon = r.status === 'passed' ? '\u2713' : r.status === 'failed' ? '\u2717' : '!';
+            const negativeTag = r.negative ? '[negative] ' : '';
+            const statusLine = `    ${icon} ${r.id}: ${negativeTag}${r.description}`;
+            console.log(statusLine);
+            if (r.status !== 'passed' && r.details) {
+                console.log(`      ${r.details}`);
+            }
+            // In verbose mode, show validation details even for passing tests
+            if (opts.verbose && r.validationDetails) {
+                const vd = r.validationDetails;
+                console.log(`      Quads: ${vd.quadCount}, Shapes: [${vd.shapesUsed.join(', ')}]`);
+                if (vd.results.length > 0) {
+                    for (const issue of vd.results) {
+                        console.log(`      - [${issue.severity}] ${issue.shape}.${issue.property}: ${issue.message}`);
+                    }
+                }
+            }
+        }
+        console.log('');
+    }
+    // Summary line
+    const parts = [];
+    parts.push(`${report.passed} passed`);
+    if (report.failed > 0)
+        parts.push(`${report.failed} failed`);
+    else
+        parts.push('0 failed');
+    if (report.errors > 0)
+        parts.push(`${report.errors} errors`);
+    else
+        parts.push('0 errors');
+    console.log(`Results: ${parts.join(', ')}`);
+    const exitCode = report.failed > 0 || report.errors > 0 ? 1 : 0;
+    console.log(`Exit code: ${exitCode}`);
+}
+/**
+ * Print the JSON report using the output library.
+ */
+function printJsonReport(report, opts) {
+    // Strip validationDetails from results for cleaner JSON output
+    const cleanResults = report.results.map((r) => {
+        const { validationDetails: _vd, ...rest } = r;
+        return rest;
+    });
+    printResult({
+        suite: report.suite,
+        mode: report.mode,
+        total: report.total,
+        passed: report.passed,
+        failed: report.failed,
+        errors: report.errors,
+        results: cleanResults,
+        byDataType: report.byDataType,
+    }, opts);
+}
+// ---------------------------------------------------------------------------
+// Command registration
+// ---------------------------------------------------------------------------
+export function registerConformanceCommand(program) {
+    const conformance = program
+        .command('conformance')
+        .description('Run conformance test suite');
+    conformance
+        .command('run')
+        .description('Execute conformance tests')
+        .requiredOption('--suite <fixtures-dir>', 'Path to test fixtures directory')
+        .option('--command <cmd>', 'External command to test against')
+        .option('--self', 'Run self-conformance tests')
+        .action(async (options) => {
+        const globalOpts = program.opts();
+        if (!options.command && !options.self) {
+            printError('Either --command or --self must be specified', globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        // External command mode: not yet supported
+        if (options.command) {
+            printError('External command mode not yet supported', globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        // Resolve suite directory
+        const suitePath = path.resolve(options.suite);
+        printVerbose(`Conformance suite: ${suitePath}`, globalOpts);
+        printVerbose('Running self-conformance tests', globalOpts);
+        try {
+            // Load fixtures
+            const fixtures = loadFixtures(suitePath);
+            printVerbose(`Loaded ${fixtures.length} fixture(s)`, globalOpts);
+            // Load SHACL shapes once
+            const { store: shapesStore, shapeFiles } = loadShapes();
+            printVerbose(`Loaded shapes: ${shapeFiles.join(', ')}`, globalOpts);
+            // Run each fixture
+            const results = [];
+            for (const fixture of fixtures) {
+                const result = runSelfFixture(fixture, shapesStore, shapeFiles, globalOpts);
+                results.push(result);
+            }
+            // Build and output report
+            const report = buildReport(options.suite, 'self', results);
+            if (globalOpts.json) {
+                printJsonReport(report, globalOpts);
+            }
+            else {
+                printHumanReport(report, globalOpts);
+            }
+            // Set exit code
+            process.exitCode = report.failed > 0 || report.errors > 0 ? 1 : 0;
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            printError(`Conformance suite failed: ${message}`, globalOpts);
+            process.exitCode = 1;
+        }
+    });
+}
+//# sourceMappingURL=conformance.js.map

package/dist/commands/conformance.js.map

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package/dist/commands/convert.d.ts

@@ -0,0 +1,21 @@
+/**
+ * cascade convert --from <format> --to <format> [file]
+ *
+ * Convert between health data formats.
+ * Supports FHIR R4, Cascade Protocol Turtle, and JSON-LD.
+ *
+ * Options:
+ *   --from <format>     Source format (fhir|cascade|c-cda)
+ *   --to <format>       Target format (turtle|jsonld|fhir|cascade)
+ *   --format <output>   Output serialization format (turtle|jsonld) [default: turtle]
+ *   --json              Output results as JSON envelope (machine-readable)
+ *   --verbose           Show detailed conversion information
+ *
+ * Supports stdin piping:
+ *   cat patient.json | cascade convert --from fhir --to cascade
+ *
+ * Zero network calls. All conversion is local.
+ */
+import { Command } from 'commander';
+export declare function registerConvertCommand(program: Command): void;
+//# sourceMappingURL=convert.d.ts.map

package/dist/commands/convert.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"convert.d.ts","sourceRoot":"","sources":["../../src/commands/convert.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAkBpC,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA8H7D"}

package/dist/commands/convert.js

@@ -0,0 +1,134 @@
+/**
+ * cascade convert --from <format> --to <format> [file]
+ *
+ * Convert between health data formats.
+ * Supports FHIR R4, Cascade Protocol Turtle, and JSON-LD.
+ *
+ * Options:
+ *   --from <format>     Source format (fhir|cascade|c-cda)
+ *   --to <format>       Target format (turtle|jsonld|fhir|cascade)
+ *   --format <output>   Output serialization format (turtle|jsonld) [default: turtle]
+ *   --json              Output results as JSON envelope (machine-readable)
+ *   --verbose           Show detailed conversion information
+ *
+ * Supports stdin piping:
+ *   cat patient.json | cascade convert --from fhir --to cascade
+ *
+ * Zero network calls. All conversion is local.
+ */
+import { readFileSync } from 'node:fs';
+import { printResult, printError, printVerbose } from '../lib/output.js';
+import { convert, detectFormat } from '../lib/fhir-converter/index.js';
+/**
+ * Read input from file or stdin.
+ * If file is provided, reads from disk.
+ * Otherwise reads all of stdin synchronously.
+ */
+function readInput(file) {
+    if (file) {
+        return readFileSync(file, 'utf-8');
+    }
+    // Read from stdin
+    return readFileSync(0, 'utf-8');
+}
+export function registerConvertCommand(program) {
+    program
+        .command('convert')
+        .description('Convert between health data formats')
+        .argument('[file]', 'Input file (reads from stdin if omitted)')
+        .requiredOption('--from <format>', 'Source format (fhir|cascade|c-cda)')
+        .requiredOption('--to <format>', 'Target format (turtle|jsonld|fhir|cascade)')
+        .option('--format <output>', 'Output serialization format (turtle|jsonld)', 'turtle')
+        .action(async (file, options) => {
+        const globalOpts = program.opts();
+        printVerbose(`Converting from ${options.from} to ${options.to}`, globalOpts);
+        if (file) {
+            printVerbose(`Input file: ${file}`, globalOpts);
+        }
+        else {
+            printVerbose('Reading from stdin', globalOpts);
+        }
+        printVerbose(`Output format: ${options.format}`, globalOpts);
+        // 1. Read input
+        let input;
+        try {
+            input = readInput(file);
+        }
+        catch (err) {
+            printError(`Failed to read input: ${err.message}`, globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        if (!input.trim()) {
+            printError('Empty input', globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        // 2. Validate source/target formats
+        const validInputFormats = ['fhir', 'cascade', 'c-cda'];
+        const validOutputFormats = ['turtle', 'jsonld', 'fhir', 'cascade'];
+        if (!validInputFormats.includes(options.from)) {
+            printError(`Invalid source format: ${options.from}. Valid: ${validInputFormats.join(', ')}`, globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        if (!validOutputFormats.includes(options.to)) {
+            printError(`Invalid target format: ${options.to}. Valid: ${validOutputFormats.join(', ')}`, globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        // 3. Auto-detect format if helpful (validate matches declared)
+        const detected = detectFormat(input);
+        if (detected && detected !== options.from) {
+            printVerbose(`Note: Input appears to be ${detected} but --from says ${options.from}. Proceeding with declared format.`, globalOpts);
+        }
+        // 4. Run conversion
+        const outputSerialization = (options.format === 'jsonld' ? 'jsonld' : 'turtle');
+        const result = await convert(input, options.from, options.to, outputSerialization);
+        // 5. Output
+        if (!result.success) {
+            for (const err of result.errors) {
+                printError(err, globalOpts);
+            }
+            for (const warn of result.warnings) {
+                printVerbose(`Warning: ${warn}`, globalOpts);
+            }
+            process.exitCode = 1;
+            return;
+        }
+        // Print warnings in verbose mode
+        for (const warn of result.warnings) {
+            printVerbose(`Warning: ${warn}`, globalOpts);
+        }
+        if (globalOpts.json) {
+            // JSON envelope for machine-readable output
+            printResult({
+                success: true,
+                from: options.from,
+                to: options.to,
+                format: result.format,
+                resourceCount: result.resourceCount,
+                warnings: result.warnings,
+                output: result.output,
+                resources: result.results.map(r => ({
+                    resourceType: r.resourceType,
+                    cascadeType: r.cascadeType,
+                    warnings: r.warnings,
+                })),
+            }, globalOpts);
+        }
+        else {
+            // Direct output (Turtle, JSON-LD, or FHIR JSON)
+            console.log(result.output);
+            // Print summary to stderr so it does not pollute piped output
+            if (result.resourceCount > 0) {
+                console.error(`Converted ${result.resourceCount} resource${result.resourceCount > 1 ? 's' : ''} ` +
+                    `(${options.from} -> ${result.format})`);
+            }
+            if (result.warnings.length > 0) {
+                console.error(`${result.warnings.length} warning${result.warnings.length > 1 ? 's' : ''}`);
+            }
+        }
+    });
+}
+//# sourceMappingURL=convert.js.map

package/dist/commands/convert.js.map

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package/dist/commands/pod/export.d.ts

@@ -0,0 +1,8 @@
+/**
+ * cascade pod export <pod-dir>
+ *
+ * Export pod data as a ZIP archive or directory copy.
+ */
+import type { Command } from 'commander';
+export declare function registerExportSubcommand(pod: Command, program: Command): void;
+//# sourceMappingURL=export.d.ts.map

package/dist/commands/pod/export.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/pod/export.js

@@ -0,0 +1,72 @@
+/**
+ * cascade pod export <pod-dir>
+ *
+ * Export pod data as a ZIP archive or directory copy.
+ */
+import * as path from 'path';
+import { printResult, printError, printVerbose } from '../../lib/output.js';
+import { resolvePodDir, isDirectory, copyDirectory, createZipArchive } from './helpers.js';
+export function registerExportSubcommand(pod, program) {
+    pod
+        .command('export')
+        .description('Export pod data')
+        .argument('<pod-dir>', 'Path to the Cascade Pod')
+        .option('--format <fmt>', 'Export format (zip|directory)', 'zip')
+        .option('--output <path>', 'Output path for export')
+        .action(async (podDir, options) => {
+        const globalOpts = program.opts();
+        const absDir = resolvePodDir(podDir);
+        printVerbose(`Exporting pod: ${absDir} as ${options.format}`, globalOpts);
+        // Validate pod exists
+        if (!(await isDirectory(absDir))) {
+            printError(`Pod directory not found: ${absDir}`, globalOpts);
+            process.exitCode = 1;
+            return;
+        }
+        try {
+            if (options.format === 'directory') {
+                // Copy to new directory
+                const outputDir = options.output ?? `${absDir}-export`;
+                await copyDirectory(absDir, outputDir);
+                if (globalOpts.json) {
+                    printResult({
+                        status: 'exported',
+                        format: 'directory',
+                        source: absDir,
+                        output: outputDir,
+                    }, globalOpts);
+                }
+                else {
+                    console.log(`Pod exported to directory: ${outputDir}`);
+                }
+            }
+            else if (options.format === 'zip') {
+                // Create ZIP archive
+                const outputZip = options.output ?? `${path.basename(absDir)}.zip`;
+                const absOutputZip = path.resolve(process.cwd(), outputZip);
+                await createZipArchive(absDir, absOutputZip);
+                if (globalOpts.json) {
+                    printResult({
+                        status: 'exported',
+                        format: 'zip',
+                        source: absDir,
+                        output: absOutputZip,
+                    }, globalOpts);
+                }
+                else {
+                    console.log(`Pod exported to ZIP: ${absOutputZip}`);
+                }
+            }
+            else {
+                printError(`Unknown export format: ${options.format}. Use 'zip' or 'directory'.`, globalOpts);
+                process.exitCode = 1;
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            printError(`Failed to export pod: ${message}`, globalOpts);
+            process.exitCode = 1;
+        }
+    });
+}
+//# sourceMappingURL=export.js.map

package/dist/commands/pod/export.js.map

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