@thammarongg/jira-mcp 0.1.0 → 0.2.0

package/README.md

@@ -6,10 +6,42 @@ Works with both **Jira Cloud** (REST API v3) and **Jira Data Center** (REST API
 
 ## Install (one-click)
 
-Once published to npm, any MCP client can run it via `npx` — no local build needed:
+Once published to npm, any MCP client can run it via `npx` — no local build needed.
+
+### Interactive installer (all agents at once)
+
+```bash
+npx -y @thammarongg/jira-mcp install
+```
+
+Shows a menu — Select All or pick agents (Claude Code, OpenCode, Codex, Cursor,
+Claude Desktop, Gemini CLI) — then asks for the Jira base URL and credentials
+(token entry is hidden on a TTY). Existing config files are backed up to
+`.bak` before any modification, and re-running updates the `jira` entry in
+place instead of duplicating it.
+
+Non-interactive (CI / scripting):
+
+```bash
+# Jira Cloud
+npx -y @thammarongg/jira-mcp install --agents all \
+  --base-url https://your-org.atlassian.net \
+  --email you@example.com --token xxx --yes
+
+# Jira Data Center (subset of agents)
+npx -y @thammarongg/jira-mcp install --agents claude-code,codex \
+  --base-url https://jira.yourcompany.com \
+  --username you --token xxx --yes
+```
+
+Flags: `--agents all` or comma-separated ids/numbers (`claude-code`,
+`opencode`, `codex`, `cursor`, `claude-desktop`, `gemini-cli`), `--base-url`,
+`--email` (Cloud) / `--username` (Data Center), `--token` (API token or PAT),
+`--password` (DC app password), `--yes` (skip the confirm prompt).
+
+### Claude Code (manual one-liner)
 
 ```bash
-# Claude Code (one-liner)
 claude mcp add jira --env JIRA_BASE_URL=https://your-org.atlassian.net \
   --env JIRA_EMAIL=you@example.com --env JIRA_API_TOKEN=xxx \
   -- npx -y @thammarongg/jira-mcp

package/dist/index.js

@@ -33,6 +33,8 @@ async function main() {
     console.error(`jira-mcp ready: ${config.baseUrl} (API v${config.apiVersion}, ${config.isCloud ? "Cloud" : "Data Center"})`);
 }
 main().catch((err) => {
-    console.error(`jira-mcp failed to start: ${err instanceof Error ? err.message : String(err)}`);
+    const msg = err instanceof Error ? err.message : String(err);
+    const prefix = process.argv[2] === "install" ? "jira-mcp install failed" : "jira-mcp failed to start";
+    console.error(`${prefix}: ${msg}`);
     process.exit(1);
 });

package/dist/install.js

@@ -1,8 +1,19 @@
-import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { copyFileSync, existsSync, mkdirSync, readFileSync, renameSync, statSync, writeFileSync } from "node:fs";
 import { homedir, platform } from "node:os";
 import { dirname, join } from "node:path";
 import * as readline from "node:readline";
-const PKG = "@thammarongg/jira-mcp";
+import { fileURLToPath } from "node:url";
+function readPackageName() {
+    try {
+        const pkgPath = join(dirname(fileURLToPath(import.meta.url)), "..", "package.json");
+        const parsed = JSON.parse(readFileSync(pkgPath, "utf8"));
+        if (typeof parsed.name === "string" && parsed.name.length > 0)
+            return parsed.name;
+    }
+    catch { }
+    return "@thammarongg/jira-mcp";
+}
+const PKG = readPackageName();
 const claudeDesktopPath = platform() === "darwin"
     ? join(homedir(), "Library", "Application Support", "Claude", "claude_desktop_config.json")
     : join(homedir(), ".config", "Claude", "claude_desktop_config.json");
@@ -48,6 +59,37 @@ function parseFlags(argv) {
     }
     return flags;
 }
+function validateCredentialFlags(flags) {
+    const anyPresent = [flags.baseUrl, flags.email, flags.username, flags.token, flags.password].some((v) => v !== undefined);
+    if (!anyPresent)
+        return;
+    if (flags.email !== undefined && flags.username !== undefined)
+        throw new Error("--email and --username are mutually exclusive (Cloud uses --email, Data Center uses --username)");
+    if (flags.email !== undefined) {
+        const missing = [];
+        if (flags.baseUrl === undefined)
+            missing.push("--base-url");
+        if (flags.token === undefined)
+            missing.push("--token");
+        if (missing.length > 0)
+            throw new Error(`--email requires ${missing.join(" and ")}`);
+        if (flags.password !== undefined)
+            throw new Error("--password is a Data Center option and cannot be combined with --email");
+        return;
+    }
+    if (flags.username !== undefined) {
+        if (flags.baseUrl === undefined)
+            throw new Error("--username requires --base-url");
+        if (flags.token === undefined && flags.password === undefined)
+            throw new Error("--username requires --token or --password");
+        return;
+    }
+    if (flags.token !== undefined)
+        throw new Error("--token requires --email (Cloud) or --username (Data Center)");
+    if (flags.password !== undefined)
+        throw new Error("--password requires --username (Data Center)");
+    throw new Error("--base-url requires --email or --username (plus --token / --password)");
+}
 function printUsage() {
     console.log(`jira-mcp install — configure the jira MCP server in your agent(s)
 
@@ -66,40 +108,181 @@ Options:
   -h, --help         Show this help
 `);
 }
+function makePrompter() {
+    const queue = [];
+    const waiters = [];
+    let closed = false;
+    let suspended = false;
+    let rl = null;
+    const attach = (r) => {
+        r.on("line", (line) => {
+            const waiter = waiters.shift();
+            if (waiter)
+                waiter(line);
+            else
+                queue.push(line);
+        });
+        r.on("close", () => {
+            if (suspended)
+                return;
+            closed = true;
+            while (waiters.length > 0)
+                waiters.shift()("");
+        });
+    };
+    const start = () => {
+        rl = readline.createInterface({
+            input: process.stdin,
+            output: process.stdout,
+            terminal: process.stdin.isTTY === true,
+        });
+        attach(rl);
+    };
+    start();
+    const prompter = {
+        get closed() {
+            return closed;
+        },
+        ask(question) {
+            process.stdout.write(question);
+            const queued = queue.shift();
+            if (queued !== undefined)
+                return Promise.resolve(queued);
+            if (closed)
+                return Promise.resolve("");
+            return new Promise((resolve) => waiters.push(resolve));
+        },
+        close() {
+            suspended = false;
+            closed = true;
+            while (waiters.length > 0)
+                waiters.shift()("");
+            rl?.close();
+            rl = null;
+        },
+        suspend() {
+            suspended = true;
+            rl?.close();
+            rl = null;
+        },
+        resume() {
+            suspended = false;
+            if (rl === null)
+                start();
+        },
+        tryQueued() {
+            return queue.shift();
+        },
+    };
+    return prompter;
+}
+function askPassword(p, promptText) {
+    const stdin = process.stdin;
+    if (typeof stdin.setRawMode !== "function") {
+        return p.ask(`${promptText} (no echo available) `).then((v) => v.trim());
+    }
+    const queued = p.tryQueued();
+    if (queued !== undefined) {
+        process.stdout.write(promptText);
+        return Promise.resolve(queued.trim());
+    }
+    return new Promise((resolve, reject) => {
+        let value = "";
+        let finished = false;
+        const cleanup = () => {
+            if (finished)
+                return;
+            finished = true;
+            stdin.removeListener("data", onData);
+            stdin.removeListener("end", onEnd);
+            stdin.removeListener("close", onClose);
+            stdin.setRawMode(false);
+        };
+        const finish = (v) => {
+            cleanup();
+            p.resume();
+            if (v === null)
+                reject(new Error("input closed while reading password"));
+            else {
+                process.stdout.write("\n");
+                resolve(v.trim());
+            }
+        };
+        const onData = (buf) => {
+            for (const ch of buf.toString("utf8")) {
+                if (ch === "\r" || ch === "\n") {
+                    finish(value);
+                    return;
+                }
+                if (ch === "\x03") {
+                    cleanup();
+                    p.resume();
+                    process.exit(130);
+                }
+                if (ch === "\x04") {
+                    finish("");
+                    return;
+                }
+                if (ch === "\u007f" || ch === "\b")
+                    value = value.slice(0, -1);
+                else if (ch >= " ")
+                    value += ch;
+            }
+        };
+        const onEnd = () => finish(null);
+        const onClose = () => finish(null);
+        p.suspend();
+        process.stdout.write(promptText);
+        stdin.setRawMode(true);
+        stdin.resume();
+        stdin.on("data", onData);
+        stdin.on("end", onEnd);
+        stdin.on("close", onClose);
+    });
+}
 export async function runInstaller(argv) {
     const flags = parseFlags(argv);
-    const selected = flags.agents ? resolveAgents(flags.agents) : await promptSelection();
-    const env = flags.baseUrl && (flags.email || flags.username)
-        ? buildEnvFromFlags(flags)
-        : await promptCredentials();
-    console.log("\nWill configure the jira MCP server in:");
-    for (const agent of selected)
-        console.log(`  - ${agent.label.padEnd(15)} ${agent.path}`);
-    console.log(`Env vars: ${Object.keys(env).join(", ")} (values not shown)`);
-    if (!flags.yes) {
-        const rl = makeRl();
-        const answer = (await ask(rl, "\nProceed? [Y/n] ")).trim().toLowerCase();
-        rl.close();
-        if (answer !== "" && answer !== "y" && answer !== "yes") {
-            console.log("Aborted.");
-            return;
-        }
-    }
-    let failed = false;
-    for (const agent of selected) {
-        try {
-            const result = writeAgentConfig(agent, env);
-            console.log(`  ok  ${agent.label.padEnd(15)} ${agent.path} (${result})`);
+    validateCredentialFlags(flags);
+    const hasCredentials = (flags.baseUrl && flags.email && flags.token) ||
+        (flags.baseUrl && flags.username && (flags.token || flags.password));
+    const needsPrompts = !flags.agents || !hasCredentials || !flags.yes;
+    const p = needsPrompts ? makePrompter() : undefined;
+    try {
+        const selected = flags.agents ? resolveAgents(flags.agents) : await promptSelection(p);
+        const env = hasCredentials ? buildEnvFromFlags(flags) : await promptCredentials(p);
+        console.log("\nWill configure the jira MCP server in:");
+        for (const agent of selected)
+            console.log(`  - ${agent.label.padEnd(15)} ${agent.path}`);
+        console.log(`Env vars: ${Object.keys(env).join(", ")} (values not shown)`);
+        if (!flags.yes) {
+            const answer = (await p.ask("\nProceed? [Y/n] ")).trim().toLowerCase();
+            if ((p.closed && answer === "") || (answer !== "" && answer !== "y" && answer !== "yes")) {
+                console.log("Aborted.");
+                return;
+            }
         }
-        catch (err) {
-            failed = true;
-            console.error(`  ERR ${agent.label.padEnd(15)} ${agent.path}: ${err instanceof Error ? err.message : String(err)}`);
+        let failed = false;
+        for (const agent of selected) {
+            try {
+                const result = writeAgentConfig(agent, env);
+                if (result === "skipped")
+                    console.log(`  skip ${agent.label.padEnd(15)} ${agent.path}`);
+                else
+                    console.log(`  ok  ${agent.label.padEnd(15)} ${agent.path} (${result})`);
+            }
+            catch (err) {
+                failed = true;
+                console.error(`  ERR ${agent.label.padEnd(15)} ${agent.path}: ${err instanceof Error ? err.message : String(err)}`);
+            }
         }
+        console.log("\nDone. Restart each agent to pick up the new MCP server.");
+        console.log("Verify by asking your agent to call the get_current_user tool.");
+        if (failed)
+            process.exitCode = 1;
+    }
+    finally {
+        p?.close();
     }
-    console.log("\nDone. Restart each agent to pick up the new MCP server.");
-    console.log("Verify by asking your agent to call the get_current_user tool.");
-    if (failed)
-        process.exitCode = 1;
 }
 function resolveAgents(spec) {
     const norm = spec.trim().toLowerCase();
@@ -107,9 +290,9 @@ function resolveAgents(spec) {
         return [...AGENTS];
     const ids = norm.split(/[,\s]+/).filter(Boolean);
     const selected = ids.map((id) => {
-        const agent = AGENTS.find((a) => a.id === id);
+        const agent = /^\d+$/.test(id) ? AGENTS[Number(id) - 1] : AGENTS.find((a) => a.id === id);
         if (!agent)
-            throw new Error(`Unknown agent '${id}'. Valid: ${AGENTS.map((a) => a.id).join(", ")} or all`);
+            throw new Error(`Unknown agent '${id}'. Valid: ${AGENTS.map((a, i) => `${i + 1}/${a.id}`).join(", ")} or all`);
         return agent;
     });
     if (selected.length === 0)
@@ -119,14 +302,10 @@ function resolveAgents(spec) {
 function buildEnvFromFlags(flags) {
     const env = { JIRA_BASE_URL: flags.baseUrl };
     if (flags.email) {
-        if (!flags.token)
-            throw new Error("--email requires --token");
         env.JIRA_EMAIL = flags.email;
         env.JIRA_API_TOKEN = flags.token;
     }
     else {
-        if (!flags.token && !flags.password)
-            throw new Error("--username requires --token or --password");
         env.JIRA_USERNAME = flags.username;
         if (flags.token)
             env.JIRA_API_TOKEN = flags.token;
@@ -135,84 +314,37 @@ function buildEnvFromFlags(flags) {
     }
     return env;
 }
-function makeRl() {
-    return readline.createInterface({ input: process.stdin, output: process.stdout });
-}
-function ask(rl, question) {
-    return new Promise((resolve) => rl.question(question, resolve));
-}
-function askPassword(promptText) {
-    const stdin = process.stdin;
-    if (typeof stdin.setRawMode !== "function") {
-        return new Promise((resolve) => {
-            process.stdout.write(`${promptText} (non-interactive: value visible)\n`);
-            const rl = makeRl();
-            rl.question("", (v) => {
-                rl.close();
-                resolve(v.trim());
-            });
-        });
-    }
-    return new Promise((resolve) => {
-        let value = "";
-        const done = () => {
-            stdin.removeListener("data", onData);
-            stdin.setRawMode(false);
-            process.stdout.write("\n");
-            resolve(value);
-        };
-        const onData = (buf) => {
-            for (const ch of buf.toString("utf8")) {
-                if (ch === "\r" || ch === "\n") {
-                    done();
-                    return;
-                }
-                if (ch === "\u007f" || ch === "\b")
-                    value = value.slice(0, -1);
-                else if (ch >= " ")
-                    value += ch;
-            }
-        };
-        process.stdout.write(promptText);
-        stdin.setRawMode(true);
-        stdin.on("data", onData);
-    });
-}
-async function promptSelection() {
+async function promptSelection(p) {
     console.log(`\njira-mcp installer — select agents to configure:\n`);
     console.log("  a) Select All");
     AGENTS.forEach((agent, i) => {
         console.log(`  ${i + 1}) ${agent.label.padEnd(15)} ${agent.path}`);
     });
-    const rl = makeRl();
     for (;;) {
-        const answer = (await ask(rl, "\nChoice (e.g. 1,3 or a): ")).trim().toLowerCase();
-        rl.close();
+        const answer = (await p.ask("\nChoice (e.g. 1,3 or a): ")).trim().toLowerCase();
+        if (answer === "" && p.closed)
+            throw new Error("No input received (stdin closed)");
         try {
             return answer === "a" || answer === "all" ? [...AGENTS] : resolveAgents(answer);
         }
         catch (err) {
+            if (p.closed)
+                throw err;
             console.log(`  ${err instanceof Error ? err.message : String(err)}`);
         }
     }
 }
-async function promptCredentials() {
-    const rl = makeRl();
-    const baseUrl = (await ask(rl, "Jira base URL (e.g. https://your-org.atlassian.net): ")).trim();
+async function promptCredentials(p) {
+    const baseUrl = (await p.ask("Jira base URL (e.g. https://your-org.atlassian.net): ")).trim();
     if (!/^https?:\/\/.+/i.test(baseUrl)) {
-        rl.close();
         throw new Error("Jira base URL must start with http(s)://");
     }
-    const mode = (await ask(rl, "Deployment: [1] Jira Cloud  [2] Jira Data Center (default 1): ")).trim();
+    const mode = (await p.ask("Deployment: [1] Jira Cloud  [2] Jira Data Center (default 1): ")).trim();
     const isCloud = mode === "" || mode === "1";
-    const user = (await ask(rl, isCloud ? "Atlassian email: " : "Data Center username: ")).trim();
-    if (!user) {
-        rl.close();
+    const user = (await p.ask(isCloud ? "Atlassian email: " : "Data Center username: ")).trim();
+    if (!user)
         throw new Error(isCloud ? "Email is required" : "Username is required");
-    }
-    const secret = await askPassword(isCloud ? "API token (hidden, from id.atlassian.com): " : "API token / app password (hidden): ");
-    rl.resume();
-    rl.close();
+    const secret = await askPassword(p, isCloud ? "API token (hidden, from id.atlassian.com): " : "API token / app password (hidden): ");
     if (!secret)
         throw new Error("API token is required");
     const env = { JIRA_BASE_URL: baseUrl };
@@ -230,8 +362,14 @@ function writeAgentConfig(agent, env) {
     if (agent.kind === "codex")
         return upsertCodex(agent.path, env);
     if (agent.kind === "opencode") {
+        const jsonc = agent.path.replace(/\.json$/, ".jsonc");
+        if (existsSync(jsonc)) {
+            console.log(`  ! ${jsonc} exists — skipping automatic opencode write (JSONC may contain comments); merge the jira entry manually`);
+            return "skipped";
+        }
         return mergeJsonFile(agent.path, (obj) => {
             const mcp = (obj.mcp ??= {});
+            reportEnvChanges(envOf(mcp.jira), env, agent.path);
             mcp.jira = {
                 type: "local",
                 command: ["npx", "-y", PKG],
@@ -242,31 +380,122 @@ function writeAgentConfig(agent, env) {
     }
     return mergeJsonFile(agent.path, (obj) => {
         const mcpServers = (obj.mcpServers ??= {});
+        reportEnvChanges(envOf(mcpServers.jira), env, agent.path);
         mcpServers.jira = { command: "npx", args: ["-y", PKG], env };
     });
 }
+function envOf(entry) {
+    if (!entry || typeof entry !== "object" || Array.isArray(entry))
+        return undefined;
+    const e = entry.env ?? entry.environment;
+    if (!e || typeof e !== "object" || Array.isArray(e))
+        return undefined;
+    return e;
+}
+function reportEnvChanges(oldEnv, newEnv, path) {
+    if (!oldEnv)
+        return;
+    const replaced = Object.keys(newEnv).filter((k) => oldEnv[k] !== newEnv[k]);
+    const removed = Object.keys(oldEnv).filter((k) => !(k in newEnv));
+    if (replaced.length > 0)
+        console.log(`  ! ${path}: existing jira entry will be replaced — env vars changed: ${replaced.join(", ")}`);
+    if (removed.length > 0)
+        console.log(`  ! ${path}: existing jira entry will be replaced — env vars removed: ${removed.join(", ")}`);
+}
+function fileStamp(path) {
+    const s = statSync(path);
+    return { mtimeMs: s.mtimeMs, size: s.size };
+}
+function assertUnchanged(path, before) {
+    const after = statSync(path);
+    if (after.mtimeMs !== before.mtimeMs || after.size !== before.size) {
+        throw new Error("changed while installing — close running agents and retry");
+    }
+}
+function atomicWrite(path, content) {
+    const tmp = `${path}.tmp-${process.pid}`;
+    writeFileSync(tmp, content);
+    renameSync(tmp, path);
+}
 function mergeJsonFile(path, mutate) {
     const existed = existsSync(path);
+    let stamp;
     let obj = {};
     if (existed) {
+        stamp = fileStamp(path);
         const raw = readFileSync(path, "utf8");
+        let parsed;
         try {
-            const parsed = raw.trim() ? JSON.parse(raw) : {};
-            if (parsed && typeof parsed === "object" && !Array.isArray(parsed))
-                obj = parsed;
+            parsed = raw.trim() ? JSON.parse(raw) : {};
         }
         catch {
-            copyFileSync(path, `${path}.bak`);
-            console.log(`  ! ${path} was not valid JSON — backed up to ${path}.bak, starting fresh`);
+            parsed = undefined;
+        }
+        if (parsed === undefined || typeof parsed !== "object" || Array.isArray(parsed)) {
+            console.log(`  ! ${path} is not a JSON object — backing up to ${path}.bak and starting fresh`);
+        }
+        else {
+            obj = parsed;
         }
     }
     mutate(obj);
     mkdirSync(dirname(path), { recursive: true });
-    writeFileSync(path, JSON.stringify(obj, null, 2) + "\n");
+    if (existed) {
+        assertUnchanged(path, stamp);
+        copyFileSync(path, `${path}.bak`);
+    }
+    atomicWrite(path, JSON.stringify(obj, null, 2) + "\n");
     return existed ? "updated" : "created";
 }
 function tomlStr(v) {
-    return `"${v.replace(/\\/g, "\\\\").replace(/"/g, '\\"')}"`;
+    let out = "";
+    for (const ch of v) {
+        const code = ch.codePointAt(0);
+        if (ch === "\\")
+            out += "\\\\";
+        else if (ch === '"')
+            out += '\\"';
+        else if (ch === "\n")
+            out += "\\n";
+        else if (ch === "\t")
+            out += "\\t";
+        else if (ch === "\r")
+            out += "\\r";
+        else if (code < 0x20)
+            out += `\\u${code.toString(16).toUpperCase().padStart(4, "0")}`;
+        else
+            out += ch;
+    }
+    return `"${out}"`;
+}
+const JIRA_HEADER = /^\s*\[mcp_servers\.jira\](\s+#.*)?$/;
+function parseTomlEnv(lines, start) {
+    let end = lines.length;
+    for (let i = start + 1; i < lines.length; i++) {
+        if (/^\s*\[/.test(lines[i])) {
+            end = i;
+            break;
+        }
+    }
+    for (let i = start + 1; i < end; i++) {
+        const m = lines[i].match(/^\s*env\s*=\s*\{(.*)\}\s*$/);
+        if (!m)
+            continue;
+        const out = {};
+        for (const part of m[1].split(",")) {
+            const eq = part.indexOf("=");
+            if (eq < 0)
+                continue;
+            const k = part.slice(0, eq).trim();
+            let v = part.slice(eq + 1).trim();
+            if (v.length >= 2 && v.startsWith('"') && v.endsWith('"'))
+                v = v.slice(1, -1);
+            if (k)
+                out[k] = v;
+        }
+        return out;
+    }
+    return undefined;
 }
 function upsertCodex(path, env) {
     const block = [
@@ -279,24 +508,51 @@ function upsertCodex(path, env) {
     ];
     if (!existsSync(path)) {
         mkdirSync(dirname(path), { recursive: true });
-        writeFileSync(path, block.join("\n") + "\n");
+        atomicWrite(path, block.join("\n") + "\n");
         return "created";
     }
+    const stamp = fileStamp(path);
     const raw = readFileSync(path, "utf8");
-    const lines = raw.split("\n");
-    const start = lines.findIndex((l) => /^\s*\[mcp_servers\.jira\]\s*$/.test(l));
-    if (start >= 0) {
-        let end = lines.length;
-        for (let i = start + 1; i < lines.length; i++) {
-            if (/^\s*\[/.test(lines[i])) {
-                end = i;
-                break;
+    const eol = raw.includes("\r\n") ? "\r\n" : "\n";
+    const lines = raw.split("\n").map((l) => (l.endsWith("\r") ? l.slice(0, -1) : l));
+    const starts = [];
+    for (let i = 0; i < lines.length; i++) {
+        if (JIRA_HEADER.test(lines[i]))
+            starts.push(i);
+    }
+    let content;
+    if (starts.length === 0) {
+        content = raw.replace(/\s*$/, "") + eol + eol + block.join(eol) + eol;
+    }
+    else {
+        const remove = new Set();
+        for (const start of starts) {
+            let end = lines.length;
+            for (let i = start + 1; i < lines.length; i++) {
+                if (/^\s*\[/.test(lines[i])) {
+                    end = i;
+                    break;
+                }
             }
+            for (let i = start; i < end; i++)
+                remove.add(i);
         }
-        lines.splice(start, end - start, ...block);
-        writeFileSync(path, lines.join("\n"));
-        return "updated";
+        const kept = lines.filter((_, i) => !remove.has(i));
+        let insertIdx = 0;
+        for (let i = 0; i < starts[0]; i++)
+            if (!remove.has(i))
+                insertIdx++;
+        kept.splice(insertIdx, 0, ...block);
+        const after = insertIdx + block.length;
+        if (after < kept.length && kept[after].trim() !== "")
+            kept.splice(after, 0, "");
+        content = kept.join(eol);
+        if (!content.endsWith(eol))
+            content += eol;
     }
-    writeFileSync(path, raw.replace(/\s*$/, "") + "\n\n" + block.join("\n") + "\n");
+    reportEnvChanges(starts.length > 0 ? parseTomlEnv(lines, starts[0]) : undefined, env, path);
+    assertUnchanged(path, stamp);
+    copyFileSync(path, `${path}.bak`);
+    atomicWrite(path, content);
     return "updated";
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@thammarongg/jira-mcp",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "description": "MCP server exposing the Jira REST API (boards, sprints, issues, JQL, and a generic passthrough) for Jira Cloud and Data Center",
   "type": "module",
   "bin": {

package/skill/SKILL.md

@@ -13,8 +13,18 @@ server-side.
 
 ## If the jira MCP tools are not available
 
-Tell the user the server isn't configured and offer to set it up. Required
-env vars:
+Tell the user the server isn't configured and offer to set it up. Easiest is
+the interactive installer (writes config for the selected agents — Claude
+Code, OpenCode, Codex, Cursor, Claude Desktop, Gemini CLI; backs up existing
+files to `.bak`):
+
+```bash
+npx -y @thammarongg/jira-mcp install
+```
+
+Or non-interactive: `npx -y @thammarongg/jira-mcp install --agents all
+--base-url https://your-org.atlassian.net --email you@example.com --token xxx
+--yes`. Required env vars:
 
 - `JIRA_BASE_URL` — `https://your-org.atlassian.net` (Cloud) or
   `https://jira.yourcompany.com` (DC)