npm - @tetrascience-npm/tetrascience-react-ui - Versions diffs - 0.6.0-beta.83.1 → 0.6.0-beta.84.1 - Mend

@tetrascience-npm/tetrascience-react-ui 0.6.0-beta.83.1 → 0.6.0-beta.84.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (63) hide show

package/dist/components/charts/Chromatogram/Chromatogram.js CHANGED Viewed

@@ -1,85 +1,93 @@
-import { jsx as p, jsxs as S } from "react/jsx-runtime";
-import G from "plotly.js-dist";
-import { useRef as j, useMemo as n, useEffect as F } from "react";
-import { usePlotlyTheme as L } from "../../../hooks/use-plotly-theme.js";
-import { CHART_COLORS as M } from "../../../utils/colors.js";
+import { jsx as p, jsxs as G } from "react/jsx-runtime";
+import L from "plotly.js-dist";
+import { useRef as F, useMemo as s, useEffect as $ } from "react";
+import { useChartTooltip as D } from "../ChartTooltip/ChartTooltip.js";
+import { usePlotlyTheme as H } from "../../../hooks/use-plotly-theme.js";
+import { CHART_COLORS as b } from "../../../utils/colors.js";
 /* empty css                  */
-const $ = 75, D = 1.05, H = (e) => {
+const I = 75, V = 1.05, z = (e) => {
   const r = {
     A: e.peakA,
     T: e.peakT,
     G: e.peakG,
     C: e.peakC
   }, m = Object.values(r);
-  if (m.every((i) => i === m[0]))
+  if (m.every((a) => a === m[0]))
     return "";
   let h = "", u = 0;
-  return Object.entries(r).forEach(([i, f]) => {
-    f > u && (h = i, u = f);
+  return Object.entries(r).forEach(([a, f]) => {
+    f > u && (h = a, u = f);
   }), h;
-}, K = ({
+}, ee = ({
   data: e = [],
   width: r = 900,
   height: m = 600,
-  positionInterval: d = 10,
-  colorA: h = M[0],
+  positionInterval: x = 10,
+  colorA: h = b[0],
   // blue
-  colorT: u = M[2],
+  colorT: u = b[2],
   // teal/green
-  colorG: i = M[3],
+  colorG: a = b[3],
   // red
-  colorC: f = M[1]
+  colorC: f = b[1]
   // orange
 }) => {
-  const x = j(null), y = L(), t = n(() => e.map((s) => s.position), [e]), B = n(() => e.map((s) => H(s)), [e]), k = n(() => e.map((s) => s.peakA), [e]), P = n(() => e.map((s) => s.peakT), [e]), T = n(() => e.map((s) => s.peakG), [e]), N = n(() => e.map((s) => s.peakC), [e]), v = n(
+  const g = F(null), y = H(), { bindTooltip: M, tooltipElement: B } = D({
+    xLabel: "Position",
+    yLabel: "Intensity"
+  }), n = s(() => e.map((t) => t.position), [e]), R = s(() => e.map((t) => z(t)), [e]), T = s(() => e.map((t) => t.peakA), [e]), k = s(() => e.map((t) => t.peakT), [e]), P = s(() => e.map((t) => t.peakG), [e]), v = s(() => e.map((t) => t.peakC), [e]), q = s(
     () => ({
-      x: t,
-      y: k,
+      x: n,
+      y: T,
       type: "scatter",
       mode: "lines",
+      hoverinfo: "none",
       name: "A",
       line: { color: h, width: 2, shape: "spline" }
     }),
-    [t, k, h]
-  ), w = n(
+    [n, T, h]
+  ), w = s(
     () => ({
-      x: t,
-      y: P,
+      x: n,
+      y: k,
       type: "scatter",
       mode: "lines",
+      hoverinfo: "none",
       name: "T",
       line: { color: u, width: 2, shape: "spline" }
     }),
-    [t, P, u]
-  ), C = n(
+    [n, k, u]
+  ), A = s(
     () => ({
-      x: t,
-      y: T,
+      x: n,
+      y: P,
       type: "scatter",
       mode: "lines",
+      hoverinfo: "none",
       name: "G",
-      line: { color: i, width: 2, shape: "spline" }
+      line: { color: a, width: 2, shape: "spline" }
     }),
-    [t, T, i]
-  ), A = n(
+    [n, P, a]
+  ), E = s(
     () => ({
-      x: t,
-      y: N,
+      x: n,
+      y: v,
       type: "scatter",
       mode: "lines",
+      hoverinfo: "none",
       name: "C",
       line: { color: f, width: 2, shape: "spline" }
     }),
-    [t, N, f]
-  ), _ = n(
-    () => Math.max(...k, ...P, ...T, ...N),
-    [k, P, T, N]
+    [n, v, f]
+  ), _ = s(
+    () => Math.max(...T, ...k, ...P, ...v),
+    [T, k, P, v]
   );
-  return F(() => {
-    if (!x.current || e.length === 0) return;
-    const s = [v, w, C, A], b = {
+  return $(() => {
+    if (!g.current || e.length === 0) return;
+    const t = [q, w, A, E], N = {
       width: r,
-      height: m - $,
+      height: m - I,
       margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },
       paper_bgcolor: y.paperBg,
       plot_bgcolor: y.plotBg,
@@ -92,7 +100,7 @@ const $ = 75, D = 1.05, H = (e) => {
         zeroline: !1,
         showticklabels: !1,
         showline: !1,
-        range: [Math.min(...t), Math.max(...t)],
+        range: [Math.min(...n), Math.max(...n)],
         fixedrange: !0
       },
       yaxis: {
@@ -100,54 +108,54 @@ const $ = 75, D = 1.05, H = (e) => {
         zeroline: !1,
         showticklabels: !1,
         showline: !1,
-        range: [0, _ * D],
+        range: [0, _ * V],
         fixedrange: !0
       }
-    }, a = {
+    }, i = {
       responsive: !0,
       displayModeBar: !1,
       displaylogo: !1,
       fillFrame: !0
     };
-    G.newPlot(x.current, s, b, a);
-    const c = x.current;
+    L.newPlot(g.current, t, N, i), M(g.current);
+    const l = g.current;
     return () => {
-      c && G.purge(c);
+      l && L.purge(l);
     };
-  }, [e, r, m, v, w, C, A, _, t, y]), e.length === 0 ? /* @__PURE__ */ p("div", { className: "chart-container", children: "No data available" }) : /* @__PURE__ */ S("div", { className: "chromatogram-container", style: { width: r, height: m }, children: [
+  }, [e, r, m, q, w, A, E, _, n, y, M]), e.length === 0 ? /* @__PURE__ */ p("div", { className: "chart-container", children: "No data available" }) : /* @__PURE__ */ G("div", { className: "chromatogram-container relative", style: { width: r, height: m }, children: [
     (() => {
-      const s = () => {
-        const a = Math.min(...t), c = Math.max(...t), q = r;
-        return /* @__PURE__ */ p("div", { className: "sequence-letters-container", children: B.map((l, g) => {
-          const o = t[g], E = l === "A" ? h : l === "T" ? u : l === "G" ? i : l === "C" ? f : y.textColor, R = (o - a) / (c - a) * q;
+      const t = () => {
+        const i = Math.min(...n), l = Math.max(...n), C = r;
+        return /* @__PURE__ */ p("div", { className: "sequence-letters-container", children: R.map((c, d) => {
+          const o = n[d], O = c === "A" ? h : c === "T" ? u : c === "G" ? a : c === "C" ? f : y.textColor, j = (o - i) / (l - i) * C;
           return /* @__PURE__ */ p(
             "span",
             {
               className: "sequence-letter",
               style: {
-                left: `${R}px`,
-                color: E
+                left: `${j}px`,
+                color: O
               },
-              children: l
+              children: c
             },
-            `base-${g}`
+            `base-${d}`
           );
         }) });
-      }, b = () => {
-        const a = Math.min(...t), c = Math.max(...t), q = r, l = Math.ceil(a / d) * d, g = [];
-        for (let o = l; o <= c; o += d)
-          g.push({
+      }, N = () => {
+        const i = Math.min(...n), l = Math.max(...n), C = r, c = Math.ceil(i / x) * x, d = [];
+        for (let o = c; o <= l; o += x)
+          d.push({
             position: o,
             label: o.toString()
           });
-        return /* @__PURE__ */ p("div", { className: "position-numbers-container", children: g.map((o) => {
-          const O = (o.position - a) / (c - a) * q;
+        return /* @__PURE__ */ p("div", { className: "position-numbers-container", children: d.map((o) => {
+          const S = (o.position - i) / (l - i) * C;
           return /* @__PURE__ */ p(
             "span",
             {
               className: "position-number",
               style: {
-                left: `${O}px`
+                left: `${S}px`
               },
               children: o.label
             },
@@ -155,15 +163,16 @@ const $ = 75, D = 1.05, H = (e) => {
           );
         }) });
       };
-      return /* @__PURE__ */ S("div", { className: "sequence-header", children: [
-        s(),
-        b()
+      return /* @__PURE__ */ G("div", { className: "sequence-header", children: [
+        t(),
+        N()
       ] });
     })(),
-    /* @__PURE__ */ p("div", { className: "chromatogram-chart", children: /* @__PURE__ */ p("div", { ref: x, style: { width: "100%", height: "100%" } }) })
+    /* @__PURE__ */ p("div", { className: "chromatogram-chart", children: /* @__PURE__ */ p("div", { ref: g, style: { width: "100%", height: "100%" } }) }),
+    B
   ] });
 };
 export {
-  K as Chromatogram
+  ee as Chromatogram
 };
 //# sourceMappingURL=Chromatogram.js.map

package/dist/components/charts/Chromatogram/Chromatogram.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"Chromatogram.js","sources":["../../../../src/components/charts/Chromatogram/Chromatogram.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useRef, useMemo } from \"react\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\nimport { CHART_COLORS } from \"@/utils/colors\";\nimport \"./Chromatogram.scss\";\n\n/** Height offset for the plot area in pixels /\nconst PLOT_HEIGHT_OFFSET = 75;\n/* Scale factor for y-axis range to add padding above max value /\nconst Y_AXIS_PADDING_FACTOR = 1.05;\n\ninterface PeakData {\n position: number;\n base?: string;\n peakA: number;\n peakT: number;\n peakG: number;\n peakC: number;\n}\n\ninterface ChromatogramProps {\n data?: PeakData[];\n width?: number;\n height?: number;\n positionInterval?: number;\n colorA?: string;\n colorT?: string;\n colorG?: string;\n colorC?: string;\n}\n\nconst determineBase = (item: PeakData): string => {\n const peakValues = {\n A: item.peakA,\n T: item.peakT,\n G: item.peakG,\n C: item.peakC,\n };\n\n const values = Object.values(peakValues);\n const allEqual = values.every((val) => val === values[0]);\n\n if (allEqual) {\n return \"\";\n }\n\n let highestBase = \"\";\n let highestValue = 0;\n\n Object.entries(peakValues).forEach(([base, value]) => {\n if (value > highestValue) {\n highestBase = base;\n highestValue = value;\n }\n });\n\n return highestBase;\n};\n\nconst Chromatogram: React.FC<ChromatogramProps> = ({\n data = [],\n width = 900,\n height = 600,\n positionInterval = 10,\n colorA = CHART_COLORS[0], // blue\n colorT = CHART_COLORS[2], // teal/green\n colorG = CHART_COLORS[3], // red\n colorC = CHART_COLORS[1], // orange\n}) => {\n const plotRef = useRef<HTMLDivElement>(null);\n const theme = usePlotlyTheme();\n\n const positions = useMemo(() => data.map((item) => item.position), [data]);\n const sequence = useMemo(() => data.map((item) => determineBase(item)), [data]);\n const peakA = useMemo(() => data.map((item) => item.peakA), [data]);\n const peakT = useMemo(() => data.map((item) => item.peakT), [data]);\n const peakG = useMemo(() => data.map((item) => item.peakG), [data]);\n const peakC = useMemo(() => data.map((item) => item.peakC), [data]);\n\n const aTrace = useMemo(\n () => ({\n x: positions,\n y: peakA,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n name: \"A\",\n line: { color: colorA, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakA, colorA],\n );\n\n const tTrace = useMemo(\n () => ({\n x: positions,\n y: peakT,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n name: \"T\",\n line: { color: colorT, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakT, colorT],\n );\n\n const gTrace = useMemo(\n () => ({\n x: positions,\n y: peakG,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n name: \"G\",\n line: { color: colorG, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakG, colorG],\n );\n\n const cTrace = useMemo(\n () => ({\n x: positions,\n y: peakC,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n name: \"C\",\n line: { color: colorC, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakC, colorC],\n );\n\n const maxValue = useMemo(\n () => Math.max(...peakA, ...peakT, ...peakG, ...peakC),\n [peakA, peakT, peakG, peakC],\n );\n\n useEffect(() => {\n if (!plotRef.current \|\| data.length === 0) return;\n\n const plotData = [aTrace, tTrace, gTrace, cTrace];\n\n const layout: Partial<Plotly.Layout> = {\n width: width,\n height: height - PLOT_HEIGHT_OFFSET,\n margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },\n paper_bgcolor: theme.paperBg,\n plot_bgcolor: theme.plotBg,\n font: {\n family: \"Inter, sans-serif\",\n },\n showlegend: false,\n xaxis: {\n showgrid: false,\n zeroline: false,\n showticklabels: false,\n showline: false,\n range: [Math.min(...positions), Math.max(...positions)],\n fixedrange: true,\n },\n yaxis: {\n showgrid: false,\n zeroline: false,\n showticklabels: false,\n showline: false,\n range: [0, maxValue Y_AXIS_PADDING_FACTOR],\n fixedrange: true,\n },\n };\n\n const config = {\n responsive: true,\n displayModeBar: false,\n displaylogo: false,\n fillFrame: true,\n };\n\n Plotly.newPlot(plotRef.current, plotData, layout, config);\n\n // Capture ref value for cleanup\n const plotElement = plotRef.current;\n\n return () => {\n if (plotElement) {\n Plotly.purge(plotElement);\n }\n };\n }, [data, width, height, aTrace, tTrace, gTrace, cTrace, maxValue, positions, theme]);\n\n if (data.length === 0) {\n return <div className=\"chart-container\">No data available</div>;\n }\n\n const renderSequence = () => {\n const renderSequenceLetters = () => {\n const minPosition = Math.min(...positions);\n const maxPosition = Math.max(...positions);\n const chartWidth = width;\n\n return (\n <div className=\"sequence-letters-container\">\n {sequence.map((base, index) => {\n const position = positions[index];\n const color =\n base === \"A\"\n ? colorA\n : base === \"T\"\n ? colorT\n : base === \"G\"\n ? colorG\n : base === \"C\"\n ? colorC\n : theme.textColor;\n\n const percentage =\n (position - minPosition) / (maxPosition - minPosition);\n const leftPosition = percentage * chartWidth;\n\n return (\n <span\n key={`base-${index}`}\n className=\"sequence-letter\"\n style={{\n left: `${leftPosition}px`,\n color,\n }}\n >\n {base}\n </span>\n );\n })}\n </div>\n );\n };\n\n const renderPositionNumbers = () => {\n const minPosition = Math.min(...positions);\n const maxPosition = Math.max(...positions);\n const chartWidth = width;\n\n const startPos =\n Math.ceil(minPosition / positionInterval) * positionInterval;\n\n const regularPositionLabels: Array<{ position: number; label: string }> =\n [];\n\n for (let pos = startPos; pos <= maxPosition; pos += positionInterval) {\n regularPositionLabels.push({\n position: pos,\n label: pos.toString(),\n });\n }\n\n return (\n <div className=\"position-numbers-container\">\n {regularPositionLabels.map((label) => {\n const percentage =\n (label.position - minPosition) / (maxPosition - minPosition);\n const leftPosition = percentage * chartWidth;\n\n return (\n <span\n key={`pos-${label.position}`}\n className=\"position-number\"\n style={{\n left: `${leftPosition}px`,\n }}\n >\n {label.label}\n </span>\n );\n })}\n </div>\n );\n };\n\n return (\n <div className=\"sequence-header\">\n {renderSequenceLetters()}\n {renderPositionNumbers()}\n </div>\n );\n };\n\n return (\n <div className=\"chromatogram-container\" style={{ width, height }}>\n {renderSequence()}\n <div className=\"chromatogram-chart\">\n <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n </div>\n </div>\n );\n};\n\nexport { Chromatogram };\nexport type { PeakData, ChromatogramProps 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1	+ {"version":3,"file":"Chromatogram.js","sources":["../../../../src/components/charts/Chromatogram/Chromatogram.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useRef, useMemo } from \"react\";\n\nimport { useChartTooltip } from \"../ChartTooltip\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\nimport { CHART_COLORS } from \"@/utils/colors\";\nimport \"./Chromatogram.scss\";\n\n/** Height offset for the plot area in pixels /\nconst PLOT_HEIGHT_OFFSET = 75;\n/* Scale factor for y-axis range to add padding above max value /\nconst Y_AXIS_PADDING_FACTOR = 1.05;\n\ninterface PeakData {\n position: number;\n base?: string;\n peakA: number;\n peakT: number;\n peakG: number;\n peakC: number;\n}\n\ninterface ChromatogramProps {\n data?: PeakData[];\n width?: number;\n height?: number;\n positionInterval?: number;\n colorA?: string;\n colorT?: string;\n colorG?: string;\n colorC?: string;\n}\n\nconst determineBase = (item: PeakData): string => {\n const peakValues = {\n A: item.peakA,\n T: item.peakT,\n G: item.peakG,\n C: item.peakC,\n };\n\n const values = Object.values(peakValues);\n const allEqual = values.every((val) => val === values[0]);\n\n if (allEqual) {\n return \"\";\n }\n\n let highestBase = \"\";\n let highestValue = 0;\n\n Object.entries(peakValues).forEach(([base, value]) => {\n if (value > highestValue) {\n highestBase = base;\n highestValue = value;\n }\n });\n\n return highestBase;\n};\n\nconst Chromatogram: React.FC<ChromatogramProps> = ({\n data = [],\n width = 900,\n height = 600,\n positionInterval = 10,\n colorA = CHART_COLORS[0], // blue\n colorT = CHART_COLORS[2], // teal/green\n colorG = CHART_COLORS[3], // red\n colorC = CHART_COLORS[1], // orange\n}) => {\n const plotRef = useRef<HTMLDivElement>(null);\n const theme = usePlotlyTheme();\n const { bindTooltip, tooltipElement } = useChartTooltip({\n xLabel: \"Position\",\n yLabel: \"Intensity\",\n });\n\n const positions = useMemo(() => data.map((item) => item.position), [data]);\n const sequence = useMemo(() => data.map((item) => determineBase(item)), [data]);\n const peakA = useMemo(() => data.map((item) => item.peakA), [data]);\n const peakT = useMemo(() => data.map((item) => item.peakT), [data]);\n const peakG = useMemo(() => data.map((item) => item.peakG), [data]);\n const peakC = useMemo(() => data.map((item) => item.peakC), [data]);\n\n const aTrace = useMemo(\n () => ({\n x: positions,\n y: peakA,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n hoverinfo: \"none\" as const,\n name: \"A\",\n line: { color: colorA, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakA, colorA],\n );\n\n const tTrace = useMemo(\n () => ({\n x: positions,\n y: peakT,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n hoverinfo: \"none\" as const,\n name: \"T\",\n line: { color: colorT, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakT, colorT],\n );\n\n const gTrace = useMemo(\n () => ({\n x: positions,\n y: peakG,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n hoverinfo: \"none\" as const,\n name: \"G\",\n line: { color: colorG, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakG, colorG],\n );\n\n const cTrace = useMemo(\n () => ({\n x: positions,\n y: peakC,\n type: \"scatter\" as const,\n mode: \"lines\" as const,\n hoverinfo: \"none\" as const,\n name: \"C\",\n line: { color: colorC, width: 2, shape: \"spline\" as const },\n }),\n [positions, peakC, colorC],\n );\n\n const maxValue = useMemo(\n () => Math.max(...peakA, ...peakT, ...peakG, ...peakC),\n [peakA, peakT, peakG, peakC],\n );\n\n useEffect(() => {\n if (!plotRef.current \|\| data.length === 0) return;\n\n const plotData = [aTrace, tTrace, gTrace, cTrace];\n\n const layout: Partial<Plotly.Layout> = {\n width: width,\n height: height - PLOT_HEIGHT_OFFSET,\n margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },\n paper_bgcolor: theme.paperBg,\n plot_bgcolor: theme.plotBg,\n font: {\n family: \"Inter, sans-serif\",\n },\n showlegend: false,\n xaxis: {\n showgrid: false,\n zeroline: false,\n showticklabels: false,\n showline: false,\n range: [Math.min(...positions), Math.max(...positions)],\n fixedrange: true,\n },\n yaxis: {\n showgrid: false,\n zeroline: false,\n showticklabels: false,\n showline: false,\n range: [0, maxValue Y_AXIS_PADDING_FACTOR],\n fixedrange: true,\n },\n };\n\n const config = {\n responsive: true,\n displayModeBar: false,\n displaylogo: false,\n fillFrame: true,\n };\n\n Plotly.newPlot(plotRef.current, plotData, layout, config);\n bindTooltip(plotRef.current);\n\n // Capture ref value for cleanup\n const plotElement = plotRef.current;\n\n return () => {\n if (plotElement) {\n Plotly.purge(plotElement);\n }\n };\n }, [data, width, height, aTrace, tTrace, gTrace, cTrace, maxValue, positions, theme, bindTooltip]);\n\n if (data.length === 0) {\n return <div className=\"chart-container\">No data available</div>;\n }\n\n const renderSequence = () => {\n const renderSequenceLetters = () => {\n const minPosition = Math.min(...positions);\n const maxPosition = Math.max(...positions);\n const chartWidth = width;\n\n return (\n <div className=\"sequence-letters-container\">\n {sequence.map((base, index) => {\n const position = positions[index];\n const color =\n base === \"A\"\n ? colorA\n : base === \"T\"\n ? colorT\n : base === \"G\"\n ? colorG\n : base === \"C\"\n ? colorC\n : theme.textColor;\n\n const percentage =\n (position - minPosition) / (maxPosition - minPosition);\n const leftPosition = percentage * chartWidth;\n\n return (\n <span\n key={`base-${index}`}\n className=\"sequence-letter\"\n style={{\n left: `${leftPosition}px`,\n color,\n }}\n >\n {base}\n </span>\n );\n })}\n </div>\n );\n };\n\n const renderPositionNumbers = () => {\n const minPosition = Math.min(...positions);\n const maxPosition = Math.max(...positions);\n const chartWidth = width;\n\n const startPos =\n Math.ceil(minPosition 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package/dist/components/charts/ChromatogramChart/ChromatogramChart.cjs.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ChromatogramChart.cjs","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { seriesColor } from \"../../../utils/colors\";\n\n\nimport {\n groupOverlappingPeaks,\n createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n validateSeriesData,\n applyBaselineCorrection,\n buildHoverExtraContent,\n collectPeaksWithBoundaryData,\n processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n ChromatogramSeries,\n PeakAnnotation,\n BaselineCorrectionMethod,\n BoundaryMarkerStyle,\n BoundaryMarkerType,\n PeakDetectionOptions,\n ChromatogramChartProps,\n PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n ChromatogramSeries,\n PeakAnnotation,\n BaselineCorrectionMethod,\n BoundaryMarkerStyle,\n BoundaryMarkerType,\n PeakDetectionOptions,\n ChromatogramChartProps,\n};\n\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n series,\n width = 900,\n height = 500,\n title,\n xAxisTitle = \"Retention Time (min)\",\n yAxisTitle = \"Signal (mAU)\",\n annotations = [],\n xRange,\n yRange,\n showLegend = true,\n showGridX = true,\n showGridY = true,\n showMarkers = false,\n markerSize = 4,\n showCrosshairs = false,\n baselineCorrection = \"none\",\n baselineWindowSize = 50,\n peakDetectionOptions,\n showPeakAreas = false,\n boundaryMarkers = \"none\",\n annotationOverlapThreshold = 0.4,\n showExportButton = true,\n}) => {\n // Derive peak detection state from options\n const enablePeakDetection = peakDetectionOptions !== undefined;\n const plotRef = useRef<HTMLDivElement>(null);\n const theme = usePlotlyTheme();\n\n // Memoize processed series with baseline correction\n const processedSeries = useMemo(() => {\n return series.map((s) => {\n const validated = validateSeriesData(s.x, s.y);\n return {\n ...s,\n x: validated.x,\n y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n };\n });\n }, [series, baselineCorrection, baselineWindowSize]);\n\n // Process user annotations to convert startX/endX to indices and compute areas\n const processedAnnotations = useMemo(() => {\n if (annotations.length === 0 \|\| processedSeries.length === 0) {\n return annotations;\n }\n // Use first series data for index lookup (user annotations apply to first series)\n const { x, y } = processedSeries[0];\n return processUserAnnotations(annotations, x, y);\n }, [annotations, processedSeries]);\n\n // Memoize peak detection results\n const allDetectedPeaks = useMemo(() => {\n const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n if (enablePeakDetection && peakDetectionOptions) {\n processedSeries.forEach((s, index) => {\n const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n if (detected.length > 0) {\n peaks.push({ peaks: detected, seriesIndex: index });\n }\n });\n }\n return peaks;\n }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n useEffect(() => {\n const currentRef = plotRef.current;\n if (!currentRef \|\| series.length === 0) return;\n\n // Build trace data with auto-assigned colors\n const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n const traceColor = seriesColor(index, s.color);\n const extraContent = buildHoverExtraContent(s.name, s.metadata);\n\n const trace: Plotly.Data = {\n x: s.x,\n y: s.y,\n type: \"scatter\" as const,\n mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n name: s.name,\n line: {\n color: traceColor,\n width: 1.5,\n },\n hovertemplate: `%{x:.2f} ${xAxisTitle}<br>%{y:.2f} ${yAxisTitle}<extra>${extraContent}</extra>`,\n };\n if (showMarkers) {\n trace.marker = {\n size: markerSize,\n color: traceColor,\n };\n }\n return trace;\n });\n\n // Add peak boundary markers if enabled\n if (boundaryMarkers !== \"none\") {\n const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n if (peaksWithData.length > 0) {\n const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n plotData.push(...boundaryTraces);\n }\n }\n\n // Collect all peaks for unified staggering logic\n const allPeaksWithMeta: PeakWithMeta[] = [];\n\n // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n processedAnnotations.forEach((ann) => {\n allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n });\n\n // Add auto-detected peaks if enabled\n if (showPeakAreas && enablePeakDetection) {\n allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n peaks.forEach((peak) => {\n allPeaksWithMeta.push({ peak, seriesIndex });\n });\n });\n }\n\n // Group all overlapping peaks and create annotations with staggering\n const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n for (const group of groups) {\n plotlyAnnotations.push(...createGroupAnnotations(group));\n }\n\n const layout: Partial<Plotly.Layout> = {\n title: title\n ? {\n text: title,\n font: {\n size: 20,\n family: \"Inter, sans-serif\",\n color: theme.textColor,\n },\n }\n : undefined,\n width,\n height,\n margin: {\n l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n t: title ? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n },\n paper_bgcolor: theme.paperBg,\n plot_bgcolor: theme.plotBg,\n font: { family: \"Inter, sans-serif\" },\n hovermode: showCrosshairs ? \"x\" as const : \"x unified\" as const,\n dragmode: \"zoom\" as const,\n xaxis: {\n title: {\n text: xAxisTitle,\n font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n standoff: 15,\n },\n showgrid: showGridX,\n gridcolor: theme.gridColor,\n linecolor: theme.lineColor,\n linewidth: 1,\n range: xRange,\n autorange: !xRange,\n zeroline: false,\n tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n showspikes: showCrosshairs,\n spikemode: \"across\" as const,\n spikesnap: \"cursor\" as const,\n spikecolor: theme.spikeColor,\n spikethickness: 1,\n spikedash: \"dot\" as const,\n },\n yaxis: {\n title: {\n text: yAxisTitle,\n font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n standoff: 10,\n },\n showgrid: showGridY,\n gridcolor: theme.gridColor,\n linecolor: theme.lineColor,\n linewidth: 1,\n range: yRange,\n autorange: !yRange,\n zeroline: false,\n tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n showspikes: showCrosshairs,\n spikemode: \"across\" as const,\n spikesnap: \"cursor\" as const,\n spikecolor: theme.spikeColor,\n spikethickness: 1,\n spikedash: \"dot\" as const,\n },\n legend: {\n x: 0.5,\n y: -0.15,\n xanchor: \"center\" as const,\n yanchor: \"top\" as const,\n orientation: \"h\" as const,\n font: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n },\n showlegend: showLegend && series.length > 1,\n annotations: plotlyAnnotations,\n };\n\n const config: Partial<Plotly.Config> = {\n responsive: true,\n displayModeBar: true,\n displaylogo: false,\n modeBarButtonsToRemove: [\n \"lasso2d\",\n \"select2d\",\n ...(showExportButton ? [] : [\"toImage\"] as Plotly.ModeBarDefaultButtons[]),\n ] as Plotly.ModeBarDefaultButtons[],\n ...(showExportButton && {\n toImageButtonOptions: {\n format: \"png\",\n filename: \"chromatogram\",\n width: width,\n height: height,\n },\n }),\n };\n\n Plotly.newPlot(currentRef, plotData, layout, config);\n\n return () => {\n if (currentRef) {\n Plotly.purge(currentRef);\n }\n };\n }, [\n processedSeries, allDetectedPeaks, series.length, width, height, title, xAxisTitle, yAxisTitle,\n processedAnnotations, xRange, yRange, showLegend, showGridX, showGridY, showMarkers, markerSize,\n showCrosshairs, enablePeakDetection, peakDetectionOptions, showPeakAreas, boundaryMarkers,\n annotationOverlapThreshold, showExportButton, theme,\n ]);\n\n return (\n <div className=\"chromatogram-chart-container\">\n <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n </div>\n );\n};\n\nexport { ChromatogramChart };\n\n"],"names":["ChromatogramChart","series","width","height","title","xAxisTitle","yAxisTitle","annotations","xRange","yRange","showLegend","showGridX","showGridY","showMarkers","markerSize","showCrosshairs","baselineCorrection","baselineWindowSize","peakDetectionOptions","showPeakAreas","boundaryMarkers","annotationOverlapThreshold","showExportButton","enablePeakDetection","plotRef","useRef","theme","usePlotlyTheme","processedSeries","useMemo","s","validated","validateSeriesData","applyBaselineCorrection","processedAnnotations","x","y","processUserAnnotations","allDetectedPeaks","peaks","index","detected","detectPeaks","useEffect","currentRef","plotData","traceColor","seriesColor","extraContent","buildHoverExtraContent","trace","peaksWithData","collectPeaksWithBoundaryData","boundaryTraces","createBoundaryMarkerTraces","allPeaksWithMeta","ann","seriesIndex","peak","groups","groupOverlappingPeaks","plotlyAnnotations","group","createGroupAnnotations","layout","CHROMATOGRAM_LAYOUT","config","Plotly","jsx"],"mappings":"8ZA8CMA,EAAsD,CAAC,CAC3D,OAAAC,EACA,MAAAC,EAAQ,IACR,OAAAC,EAAS,IACT,MAAAC,EACA,WAAAC,EAAa,uBACb,WAAAC,EAAa,eAAA,YACbC,EAAc,CAAA,EACd,OAAAC,EACA,OAAAC,EACA,WAAAC,EAAa,GACb,UAAAC,EAAY,GACZ,UAAAC,EAAY,GACZ,YAAAC,EAAc,GACd,WAAAC,EAAa,EACb,eAAAC,EAAiB,GACjB,mBAAAC,EAAqB,OACrB,mBAAAC,EAAqB,GACrB,qBAAAC,EACA,cAAAC,EAAgB,GAAA,gBAChBC,EAAkB,OAClB,2BAAAC,EAA6B,GAC7B,iBAAAC,EAAmB,EACrB,IAAM,CAEJ,MAAMC,EAAsBL,IAAyB,OAC/CM,EAAUC,EAAAA,OAAuB,IAAI,EACrCC,EAAQC,EAAAA,eAAA,EAGRC,EAAkBC,EAAAA,QAAQ,IACvB5B,EAAO,IAAK6B,GAAM,CACvB,MAAMC,EAAYC,EAAAA,mBAAmBF,EAAE,EAAGA,EAAE,CAAC,EAC7C,MAAO,CACL,GAAGA,EACH,EAAGC,EAAU,EACb,EAAGE,EAAAA,wBAAwBF,EAAU,EAAGf,EAAoBC,CAAkB,CAAA,CAElF,CAAC,EACA,CAAChB,EAAQe,EAAoBC,CAAkB,CAAC,EAG7CiB,EAAuBL,EAAAA,QAAQ,IAAM,CACzC,GAAItB,EAAY,SAAW,GAAKqB,EAAgB,SAAW,EACzD,OAAOrB,EAGT,KAAM,CAAE,EAAA4B,EAAG,EAAAC,GAAMR,EAAgB,CAAC,EAClC,OAAOS,yBAAuB9B,EAAa4B,EAAGC,CAAC,CACjD,EAAG,CAAC7B,EAAaqB,CAAe,CAAC,EAG3BU,EAAmBT,EAAAA,QAAQ,IAAM,CACrC,MAAMU,EAA4D,CAAA,EAClE,OAAIhB,GAAuBL,GACzBU,EAAgB,QAAQ,CAACE,EAAGU,IAAU,CACpC,MAAMC,EAAWC,EAAAA,YAAYZ,EAAE,EAAGA,EAAE,EAAGZ,CAAoB,EACvDuB,EAAS,OAAS,GACpBF,EAAM,KAAK,CAAE,MAAOE,EAAU,YAAaD,EAAO,CAEtD,CAAC,EAEID,CACT,EAAG,CAACX,EAAiBL,EAAqBL,CAAoB,CAAC,EAE/DyB,OAAAA,EAAAA,UAAU,IAAM,CACd,MAAMC,EAAapB,EAAQ,QAC3B,GAAI,CAACoB,GAAc3C,EAAO,SAAW,EAAG,OAGxC,MAAM4C,EAA0BjB,EAAgB,IAAI,CAACE,EAAGU,IAAU,CAChE,MAAMM,EAAaC,EAAAA,YAAYP,EAAOV,EAAE,KAAK,EACvCkB,EAAeC,EAAAA,uBAAuBnB,EAAE,KAAMA,EAAE,QAAQ,EAExDoB,EAAqB,CACzB,EAAGpB,EAAE,EACL,EAAGA,EAAE,EACL,KAAM,UACN,KAAMjB,EAAc,gBAA2B,QAC/C,KAAMiB,EAAE,KACR,KAAM,CACJ,MAAOgB,EACP,MAAO,GAAA,EAET,cAAe,YAAYzC,CAAU,gBAAgBC,CAAU,UAAU0C,CAAY,UAAA,EAEvF,OAAInC,IACFqC,EAAM,OAAS,CACb,KAAMpC,EACN,MAAOgC,CAAA,GAGJI,CACT,CAAC,EAGD,GAAI9B,IAAoB,OAAQ,CAC9B,MAAM+B,EAAgBC,EAAAA,6BAA6Bd,EAAkBJ,EAAsBN,CAAe,EAC1G,GAAIuB,EAAc,OAAS,EAAG,CAC5B,MAAME,EAAiBC,EAAAA,2BAA2BH,CAAa,EAC/DN,EAAS,KAAK,GAAGQ,CAAc,CACjC,CACF,CAGA,MAAME,EAAmC,CAAA,EAGzCrB,EAAqB,QAASsB,GAAQ,CACpCD,EAAiB,KAAK,CAAE,KAAMC,EAAK,YAAa,GAAI,CACtD,CAAC,EAGGrC,GAAiBI,GACnBe,EAAiB,QAAQ,CAAC,CAAE,MAAAC,EAAO,YAAAkB,KAAkB,CACnDlB,EAAM,QAASmB,GAAS,CACtBH,EAAiB,KAAK,CAAE,KAAAG,EAAM,YAAAD,CAAA,CAAa,CAC7C,CAAC,CACH,CAAC,EAIH,MAAME,EAASC,EAAAA,sBAAsBL,EAAkBlC,CAA0B,EAC3EwC,EAAmD,CAAA,EAEzD,UAAWC,KAASH,EAClBE,EAAkB,KAAK,GAAGE,EAAAA,uBAAuBD,CAAK,CAAC,EAGzD,MAAME,EAAiC,CACrC,MAAO5D,EACH,CACE,KAAMA,EACN,KAAM,CACJ,KAAM,GACN,OAAQ,oBACR,MAAOsB,EAAM,SAAA,CACf,EAEF,OACJ,MAAAxB,EACA,OAAAC,EACA,OAAQ,CACN,EAAG8D,EAAAA,oBAAoB,YACvB,EAAGA,EAAAA,oBAAoB,aACvB,EAAGA,EAAAA,oBAAoB,cACvB,EAAG7D,EAAQ6D,EAAAA,oBAAoB,sBAAwBA,EAAAA,oBAAoB,oBAC3E,IAAKA,EAAAA,oBAAoB,UAAA,EAE3B,cAAevC,EAAM,QACrB,aAAcA,EAAM,OACpB,KAAM,CAAE,OAAQ,mBAAA,EAChB,UAAWX,EAAiB,IAAe,YAC3C,SAAU,OACV,MAAO,CACL,MAAO,CACL,KAAMV,EACN,KAAM,CAAE,KAAM,GAAI,MAAOqB,EAAM,cAAe,OAAQ,mBAAA,EACtD,SAAU,EAAA,EAEZ,SAAUf,EACV,UAAWe,EAAM,UACjB,UAAWA,EAAM,UACjB,UAAW,EACX,MAAOlB,EACP,UAAW,CAACA,EACZ,SAAU,GACV,SAAU,CAAE,KAAM,GAAI,MAAOkB,EAAM,UAAW,OAAQ,mBAAA,EACtD,WAAYX,EACZ,UAAW,SACX,UAAW,SACX,WAAYW,EAAM,WAClB,eAAgB,EAChB,UAAW,KAAA,EAEb,MAAO,CACL,MAAO,CACL,KAAMpB,EACN,KAAM,CAAE,KAAM,GAAI,MAAOoB,EAAM,cAAe,OAAQ,mBAAA,EACtD,SAAU,EAAA,EAEZ,SAAUd,EACV,UAAWc,EAAM,UACjB,UAAWA,EAAM,UACjB,UAAW,EACX,MAAOjB,EACP,UAAW,CAACA,EACZ,SAAU,GACV,SAAU,CAAE,KAAM,GAAI,MAAOiB,EAAM,UAAW,OAAQ,mBAAA,EACtD,WAAYX,EACZ,UAAW,SACX,UAAW,SACX,WAAYW,EAAM,WAClB,eAAgB,EAChB,UAAW,KAAA,EAEb,OAAQ,CACN,EAAG,GACH,EAAG,KACH,QAAS,SACT,QAAS,MACT,YAAa,IACb,KAAM,CAAE,KAAM,GAAI,MAAOA,EAAM,UAAW,OAAQ,mBAAA,CAAoB,EAExE,WAAYhB,GAAcT,EAAO,OAAS,EAC1C,YAAa4D,CAAA,EAGTK,EAAiC,CACrC,WAAY,GACZ,eAAgB,GAChB,YAAa,GACb,uBAAwB,CACtB,UACA,WACA,GAAI5C,EAAmB,CAAA,EAAK,CAAC,SAAS,CAAA,EAExC,GAAIA,GAAoB,CACtB,qBAAsB,CACpB,OAAQ,MACR,SAAU,eACV,MAAApB,EACA,OAAAC,CAAA,CACF,CACF,EAGF,OAAAgE,EAAO,QAAQvB,EAAYC,EAAUmB,EAAQE,CAAM,EAE5C,IAAM,CACPtB,GACFuB,EAAO,MAAMvB,CAAU,CAE3B,CACF,EAAG,CACDhB,EAAiBU,EAAkBrC,EAAO,OAAQC,EAAOC,EAAQC,EAAOC,EAAYC,EACpF4B,EAAsB1B,EAAQC,EAAQC,EAAYC,EAAWC,EAAWC,EAAaC,EACrFC,EAAgBQ,EAAqBL,EAAsBC,EAAeC,EAC1EC,EAA4BC,EAAkBI,CAAA,CAC/C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1	+ {"version":3,"file":"ChromatogramChart.cjs","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { seriesColor } from \"../../../utils/colors\";\nimport { useChartTooltip } from \"../ChartTooltip\";\n\nimport {\n groupOverlappingPeaks,\n createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n validateSeriesData,\n applyBaselineCorrection,\n collectPeaksWithBoundaryData,\n processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n ChromatogramSeries,\n PeakAnnotation,\n BaselineCorrectionMethod,\n BoundaryMarkerStyle,\n BoundaryMarkerType,\n PeakDetectionOptions,\n ChromatogramChartProps,\n PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n ChromatogramSeries,\n PeakAnnotation,\n BaselineCorrectionMethod,\n BoundaryMarkerStyle,\n BoundaryMarkerType,\n PeakDetectionOptions,\n ChromatogramChartProps,\n};\n\n\n// Stable default so the no-annotations case keeps a constant identity; an\n// inline `[]` default would change every render, re-running the plot effect\n// (and tearing down the hover tooltip) on each re-render.\nconst EMPTY_ANNOTATIONS: PeakAnnotation[] = [];\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n series,\n width = 900,\n height = 500,\n title,\n xAxisTitle = \"Retention Time (min)\",\n yAxisTitle = \"Signal (mAU)\",\n annotations = EMPTY_ANNOTATIONS,\n xRange,\n yRange,\n showLegend = true,\n showGridX = true,\n showGridY = true,\n showMarkers = false,\n markerSize = 4,\n showCrosshairs = false,\n baselineCorrection = \"none\",\n baselineWindowSize = 50,\n peakDetectionOptions,\n showPeakAreas = false,\n boundaryMarkers = \"none\",\n annotationOverlapThreshold = 0.4,\n showExportButton = true,\n}) => {\n // Derive peak detection state from options\n const enablePeakDetection = peakDetectionOptions !== undefined;\n const plotRef = useRef<HTMLDivElement>(null);\n const theme = usePlotlyTheme();\n const { bindTooltip, tooltipElement } = useChartTooltip({\n xLabel: xAxisTitle,\n yLabel: yAxisTitle,\n });\n\n // Memoize processed series with baseline correction\n const processedSeries = useMemo(() => {\n return series.map((s) => {\n const validated = validateSeriesData(s.x, s.y);\n return {\n ...s,\n x: validated.x,\n y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n };\n });\n }, [series, baselineCorrection, baselineWindowSize]);\n\n // Process user annotations to convert startX/endX to indices and compute areas\n const processedAnnotations = useMemo(() => {\n if (annotations.length === 0 \|\| processedSeries.length === 0) {\n return annotations;\n }\n // Use first series data for index lookup (user annotations apply to first series)\n const { x, y } = processedSeries[0];\n return processUserAnnotations(annotations, x, y);\n }, [annotations, processedSeries]);\n\n // Memoize peak detection results\n const allDetectedPeaks = useMemo(() => {\n const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n if (enablePeakDetection && peakDetectionOptions) {\n processedSeries.forEach((s, index) => {\n const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n if (detected.length > 0) {\n peaks.push({ peaks: detected, seriesIndex: index });\n }\n });\n }\n return peaks;\n }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n useEffect(() => {\n const currentRef = plotRef.current;\n if (!currentRef \|\| series.length === 0) return;\n\n // Build trace data with auto-assigned colors\n const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n const traceColor = seriesColor(index, s.color);\n\n const trace: Plotly.Data = {\n x: s.x,\n y: s.y,\n type: \"scatter\" as const,\n mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n name: s.name,\n line: {\n color: traceColor,\n width: 1.5,\n },\n hoverinfo: \"none\" as const,\n };\n if (showMarkers) {\n trace.marker = {\n size: markerSize,\n color: traceColor,\n };\n }\n return trace;\n });\n\n // Add peak boundary markers if enabled\n if (boundaryMarkers !== \"none\") {\n const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n if (peaksWithData.length > 0) {\n const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n plotData.push(...boundaryTraces);\n }\n }\n\n // Collect all peaks for unified staggering logic\n const allPeaksWithMeta: PeakWithMeta[] = [];\n\n // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n processedAnnotations.forEach((ann) => {\n allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n });\n\n // Add auto-detected peaks if enabled\n if (showPeakAreas && enablePeakDetection) {\n allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n peaks.forEach((peak) => {\n allPeaksWithMeta.push({ peak, seriesIndex });\n });\n });\n }\n\n // Group all overlapping peaks and create annotations with staggering\n const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n for (const group of groups) {\n plotlyAnnotations.push(...createGroupAnnotations(group));\n }\n\n const layout: Partial<Plotly.Layout> = {\n title: title\n ? 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