@tetrascience-npm/tetrascience-react-ui 0.6.0-beta.82.1 → 0.6.0-beta.83.1

package/dist/components/charts/Chromatogram/Chromatogram.js

@@ -1,9 +1,10 @@
-import { jsx as p, jsxs as _ } from "react/jsx-runtime";
-import B from "plotly.js-dist";
-import { useRef as D, useMemo as n, useEffect as O } from "react";
-import { usePlotlyTheme as j } from "../../../hooks/use-plotly-theme.js";
+import { jsx as p, jsxs as S } from "react/jsx-runtime";
+import G from "plotly.js-dist";
+import { useRef as j, useMemo as n, useEffect as F } from "react";
+import { usePlotlyTheme as L } from "../../../hooks/use-plotly-theme.js";
+import { CHART_COLORS as M } from "../../../utils/colors.js";
 /* empty css                  */
-const $ = 75, L = 1.05, R = (e) => {
+const $ = 75, D = 1.05, H = (e) => {
   const r = {
     A: e.peakA,
     T: e.peakT,
@@ -16,63 +17,67 @@ const $ = 75, L = 1.05, R = (e) => {
   return Object.entries(r).forEach(([i, f]) => {
     f > u && (h = i, u = f);
   }), h;
-}, Y = ({
+}, K = ({
   data: e = [],
   width: r = 900,
   height: m = 600,
   positionInterval: d = 10,
-  colorA: h = "#2D9CDB",
-  colorT: u = "#A1C63C",
-  colorG: i = "#FF5C64",
-  colorC: f = "#FFA62E"
+  colorA: h = M[0],
+  // blue
+  colorT: u = M[2],
+  // teal/green
+  colorG: i = M[3],
+  // red
+  colorC: f = M[1]
+  // orange
 }) => {
-  const x = D(null), y = j(), s = n(() => e.map((t) => t.position), [e]), G = n(() => e.map((t) => R(t)), [e]), k = n(() => e.map((t) => t.peakA), [e]), P = n(() => e.map((t) => t.peakT), [e]), T = n(() => e.map((t) => t.peakG), [e]), C = n(() => e.map((t) => t.peakC), [e]), b = n(
+  const x = j(null), y = L(), t = n(() => e.map((s) => s.position), [e]), B = n(() => e.map((s) => H(s)), [e]), k = n(() => e.map((s) => s.peakA), [e]), P = n(() => e.map((s) => s.peakT), [e]), T = n(() => e.map((s) => s.peakG), [e]), N = n(() => e.map((s) => s.peakC), [e]), v = n(
     () => ({
-      x: s,
+      x: t,
       y: k,
       type: "scatter",
       mode: "lines",
       name: "A",
       line: { color: h, width: 2, shape: "spline" }
     }),
-    [s, k, h]
-  ), q = n(
+    [t, k, h]
+  ), w = n(
     () => ({
-      x: s,
+      x: t,
       y: P,
       type: "scatter",
       mode: "lines",
       name: "T",
       line: { color: u, width: 2, shape: "spline" }
     }),
-    [s, P, u]
-  ), v = n(
+    [t, P, u]
+  ), C = n(
     () => ({
-      x: s,
+      x: t,
       y: T,
       type: "scatter",
       mode: "lines",
       name: "G",
       line: { color: i, width: 2, shape: "spline" }
     }),
-    [s, T, i]
-  ), w = n(
+    [t, T, i]
+  ), A = n(
     () => ({
-      x: s,
-      y: C,
+      x: t,
+      y: N,
       type: "scatter",
       mode: "lines",
       name: "C",
       line: { color: f, width: 2, shape: "spline" }
     }),
-    [s, C, f]
-  ), A = n(
-    () => Math.max(...k, ...P, ...T, ...C),
-    [k, P, T, C]
+    [t, N, f]
+  ), _ = n(
+    () => Math.max(...k, ...P, ...T, ...N),
+    [k, P, T, N]
   );
-  return O(() => {
+  return F(() => {
     if (!x.current || e.length === 0) return;
-    const t = [b, q, v, w], N = {
+    const s = [v, w, C, A], b = {
       width: r,
       height: m - $,
       margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },
@@ -87,7 +92,7 @@ const $ = 75, L = 1.05, R = (e) => {
         zeroline: !1,
         showticklabels: !1,
         showline: !1,
-        range: [Math.min(...s), Math.max(...s)],
+        range: [Math.min(...t), Math.max(...t)],
         fixedrange: !0
       },
       yaxis: {
@@ -95,7 +100,7 @@ const $ = 75, L = 1.05, R = (e) => {
         zeroline: !1,
         showticklabels: !1,
         showline: !1,
-        range: [0, A * L],
+        range: [0, _ * D],
         fixedrange: !0
       }
     }, a = {
@@ -104,23 +109,23 @@ const $ = 75, L = 1.05, R = (e) => {
       displaylogo: !1,
       fillFrame: !0
     };
-    B.newPlot(x.current, t, N, a);
+    G.newPlot(x.current, s, b, a);
     const c = x.current;
     return () => {
-      c && B.purge(c);
+      c && G.purge(c);
     };
-  }, [e, r, m, b, q, v, w, A, s, y]), e.length === 0 ? /* @__PURE__ */ p("div", { className: "chart-container", children: "No data available" }) : /* @__PURE__ */ _("div", { className: "chromatogram-container", style: { width: r, height: m }, children: [
+  }, [e, r, m, v, w, C, A, _, t, y]), e.length === 0 ? /* @__PURE__ */ p("div", { className: "chart-container", children: "No data available" }) : /* @__PURE__ */ S("div", { className: "chromatogram-container", style: { width: r, height: m }, children: [
     (() => {
-      const t = () => {
-        const a = Math.min(...s), c = Math.max(...s), M = r;
-        return /* @__PURE__ */ p("div", { className: "sequence-letters-container", children: G.map((l, g) => {
-          const o = s[g], E = l === "A" ? h : l === "T" ? u : l === "G" ? i : l === "C" ? f : y.textColor, S = (o - a) / (c - a) * M;
+      const s = () => {
+        const a = Math.min(...t), c = Math.max(...t), q = r;
+        return /* @__PURE__ */ p("div", { className: "sequence-letters-container", children: B.map((l, g) => {
+          const o = t[g], E = l === "A" ? h : l === "T" ? u : l === "G" ? i : l === "C" ? f : y.textColor, R = (o - a) / (c - a) * q;
           return /* @__PURE__ */ p(
             "span",
             {
               className: "sequence-letter",
               style: {
-                left: `${S}px`,
+                left: `${R}px`,
                 color: E
               },
               children: l
@@ -128,21 +133,21 @@ const $ = 75, L = 1.05, R = (e) => {
             `base-${g}`
           );
         }) });
-      }, N = () => {
-        const a = Math.min(...s), c = Math.max(...s), M = r, l = Math.ceil(a / d) * d, g = [];
+      }, b = () => {
+        const a = Math.min(...t), c = Math.max(...t), q = r, l = Math.ceil(a / d) * d, g = [];
         for (let o = l; o <= c; o += d)
           g.push({
             position: o,
             label: o.toString()
           });
         return /* @__PURE__ */ p("div", { className: "position-numbers-container", children: g.map((o) => {
-          const F = (o.position - a) / (c - a) * M;
+          const O = (o.position - a) / (c - a) * q;
           return /* @__PURE__ */ p(
             "span",
             {
               className: "position-number",
               style: {
-                left: `${F}px`
+                left: `${O}px`
               },
               children: o.label
             },
@@ -150,15 +155,15 @@ const $ = 75, L = 1.05, R = (e) => {
           );
         }) });
       };
-      return /* @__PURE__ */ _("div", { className: "sequence-header", children: [
-        t(),
-        N()
+      return /* @__PURE__ */ S("div", { className: "sequence-header", children: [
+        s(),
+        b()
       ] });
     })(),
     /* @__PURE__ */ p("div", { className: "chromatogram-chart", children: /* @__PURE__ */ p("div", { ref: x, style: { width: "100%", height: "100%" } }) })
   ] });
 };
 export {
-  Y as Chromatogram
+  K as Chromatogram
 };
 //# sourceMappingURL=Chromatogram.js.map

package/dist/components/charts/Chromatogram/Chromatogram.js.map

@@ -1 +1 @@
-{"version":3,"file":"Chromatogram.js","sources":["../../../../src/components/charts/Chromatogram/Chromatogram.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useRef, useMemo } from \"react\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\nimport \"./Chromatogram.scss\";\n\n/** Height offset for the plot area in pixels */\nconst PLOT_HEIGHT_OFFSET = 75;\n/** Scale factor for y-axis range to add padding above max value */\nconst Y_AXIS_PADDING_FACTOR = 1.05;\n\ninterface PeakData {\n  position: number;\n  base?: string;\n  peakA: number;\n  peakT: number;\n  peakG: number;\n  peakC: number;\n}\n\ninterface ChromatogramProps {\n  data?: PeakData[];\n  width?: number;\n  height?: number;\n  positionInterval?: number;\n  colorA?: string;\n  colorT?: string;\n  colorG?: string;\n  colorC?: string;\n}\n\nconst determineBase = (item: PeakData): string => {\n  const peakValues = {\n    A: item.peakA,\n    T: item.peakT,\n    G: item.peakG,\n    C: item.peakC,\n  };\n\n  const values = Object.values(peakValues);\n  const allEqual = values.every((val) => val === values[0]);\n\n  if (allEqual) {\n    return \"\";\n  }\n\n  let highestBase = \"\";\n  let highestValue = 0;\n\n  Object.entries(peakValues).forEach(([base, value]) => {\n    if (value > highestValue) {\n      highestBase = base;\n      highestValue = value;\n    }\n  });\n\n  return highestBase;\n};\n\nconst Chromatogram: React.FC<ChromatogramProps> = ({\n  data = [],\n  width = 900,\n  height = 600,\n  positionInterval = 10,\n  colorA = \"#2D9CDB\",\n  colorT = \"#A1C63C\",\n  colorG = \"#FF5C64\",\n  colorC = \"#FFA62E\",\n}) => {\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n\n  const positions = useMemo(() => data.map((item) => item.position), [data]);\n  const sequence = useMemo(() => data.map((item) => determineBase(item)), [data]);\n  const peakA = useMemo(() => data.map((item) => item.peakA), [data]);\n  const peakT = useMemo(() => data.map((item) => item.peakT), [data]);\n  const peakG = useMemo(() => data.map((item) => item.peakG), [data]);\n  const peakC = useMemo(() => data.map((item) => item.peakC), [data]);\n\n  const aTrace = useMemo(\n    () => ({\n      x: positions,\n      y: peakA,\n      type: \"scatter\" as const,\n      mode: \"lines\" as const,\n      name: \"A\",\n      line: { color: colorA, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakA, colorA],\n  );\n\n  const tTrace = useMemo(\n    () => ({\n      x: positions,\n      y: peakT,\n      type: \"scatter\" as const,\n      mode: \"lines\" as const,\n      name: \"T\",\n      line: { color: colorT, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakT, colorT],\n  );\n\n  const gTrace = useMemo(\n    () => ({\n      x: positions,\n      y: peakG,\n      type: \"scatter\" as const,\n      mode: \"lines\" as const,\n      name: \"G\",\n      line: { color: colorG, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakG, colorG],\n  );\n\n  const cTrace = useMemo(\n    () => ({\n      x: positions,\n      y: peakC,\n      type: \"scatter\" as const,\n      mode: \"lines\" as const,\n      name: \"C\",\n      line: { color: colorC, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakC, colorC],\n  );\n\n  const maxValue = useMemo(\n    () => Math.max(...peakA, ...peakT, ...peakG, ...peakC),\n    [peakA, peakT, peakG, peakC],\n  );\n\n  useEffect(() => {\n    if (!plotRef.current || data.length === 0) return;\n\n    const plotData = [aTrace, tTrace, gTrace, cTrace];\n\n    const layout: Partial<Plotly.Layout> = {\n      width: width,\n      height: height - PLOT_HEIGHT_OFFSET,\n      margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: {\n        family: \"Inter, sans-serif\",\n      },\n      showlegend: false,\n      xaxis: {\n        showgrid: false,\n        zeroline: false,\n        showticklabels: false,\n        showline: false,\n        range: [Math.min(...positions), Math.max(...positions)],\n        fixedrange: true,\n      },\n      yaxis: {\n        showgrid: false,\n        zeroline: false,\n        showticklabels: false,\n        showline: false,\n        range: [0, maxValue * Y_AXIS_PADDING_FACTOR],\n        fixedrange: true,\n      },\n    };\n\n    const config = {\n      responsive: true,\n      displayModeBar: false,\n      displaylogo: false,\n      fillFrame: true,\n    };\n\n    Plotly.newPlot(plotRef.current, plotData, layout, config);\n\n    // Capture ref value for cleanup\n    const plotElement = plotRef.current;\n\n    return () => {\n      if (plotElement) {\n        Plotly.purge(plotElement);\n      }\n    };\n  }, [data, width, height, aTrace, tTrace, gTrace, cTrace, maxValue, positions, theme]);\n\n  if (data.length === 0) {\n    return <div className=\"chart-container\">No data available</div>;\n  }\n\n  const renderSequence = () => {\n    const renderSequenceLetters = () => {\n      const minPosition = Math.min(...positions);\n      const maxPosition = Math.max(...positions);\n      const chartWidth = width;\n\n      return (\n        <div className=\"sequence-letters-container\">\n          {sequence.map((base, index) => {\n            const position = positions[index];\n            const color =\n              base === \"A\"\n                ? colorA\n                : base === \"T\"\n                ? colorT\n                : base === \"G\"\n                ? colorG\n                : base === \"C\"\n                ? colorC\n                : theme.textColor;\n\n            const percentage =\n              (position - minPosition) / (maxPosition - minPosition);\n            const leftPosition = percentage * chartWidth;\n\n            return (\n              <span\n                key={`base-${index}`}\n                className=\"sequence-letter\"\n                style={{\n                  left: `${leftPosition}px`,\n                  color,\n                }}\n              >\n                {base}\n              </span>\n            );\n          })}\n        </div>\n      );\n    };\n\n    const renderPositionNumbers = () => {\n      const minPosition = Math.min(...positions);\n      const maxPosition = Math.max(...positions);\n      const chartWidth = width;\n\n      const startPos =\n        Math.ceil(minPosition / positionInterval) * positionInterval;\n\n      const regularPositionLabels: Array<{ position: number; label: string }> =\n        [];\n\n      for (let pos = startPos; pos <= maxPosition; pos += positionInterval) {\n        regularPositionLabels.push({\n          position: pos,\n          label: pos.toString(),\n        });\n      }\n\n      return (\n        <div className=\"position-numbers-container\">\n          {regularPositionLabels.map((label) => {\n            const percentage =\n              (label.position - minPosition) / (maxPosition - minPosition);\n            const leftPosition = percentage * chartWidth;\n\n            return (\n              <span\n                key={`pos-${label.position}`}\n                className=\"position-number\"\n                style={{\n                  left: `${leftPosition}px`,\n                }}\n              >\n                {label.label}\n              </span>\n            );\n          })}\n        </div>\n      );\n    };\n\n    return (\n      <div className=\"sequence-header\">\n        {renderSequenceLetters()}\n        {renderPositionNumbers()}\n      </div>\n    );\n  };\n\n  return (\n    <div className=\"chromatogram-container\" style={{ width, height }}>\n      {renderSequence()}\n      <div className=\"chromatogram-chart\">\n        <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n      </div>\n    </div>\n  );\n};\n\nexport { Chromatogram };\nexport type { PeakData, ChromatogramProps 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+{"version":3,"file":"Chromatogram.js","sources":["../../../../src/components/charts/Chromatogram/Chromatogram.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useRef, useMemo } from \"react\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\nimport { CHART_COLORS } from \"@/utils/colors\";\nimport \"./Chromatogram.scss\";\n\n/** Height offset for the plot area in pixels */\nconst PLOT_HEIGHT_OFFSET = 75;\n/** Scale factor for y-axis range to add padding above max value */\nconst Y_AXIS_PADDING_FACTOR = 1.05;\n\ninterface PeakData {\n  position: number;\n  base?: string;\n  peakA: number;\n  peakT: number;\n  peakG: number;\n  peakC: number;\n}\n\ninterface ChromatogramProps {\n  data?: PeakData[];\n  width?: number;\n  height?: number;\n  positionInterval?: number;\n  colorA?: string;\n  colorT?: string;\n  colorG?: string;\n  colorC?: string;\n}\n\nconst determineBase = (item: PeakData): string => {\n  const peakValues = {\n    A: item.peakA,\n    T: item.peakT,\n    G: item.peakG,\n    C: item.peakC,\n  };\n\n  const values = Object.values(peakValues);\n  const allEqual = values.every((val) => val === values[0]);\n\n  if (allEqual) {\n    return \"\";\n  }\n\n  let highestBase = \"\";\n  let highestValue = 0;\n\n  Object.entries(peakValues).forEach(([base, value]) => {\n    if (value > highestValue) {\n      highestBase = base;\n      highestValue = value;\n    }\n  });\n\n  return highestBase;\n};\n\nconst Chromatogram: React.FC<ChromatogramProps> = ({\n  data = [],\n  width = 900,\n  height = 600,\n  positionInterval = 10,\n  colorA = CHART_COLORS[0], // blue\n  colorT = CHART_COLORS[2], // teal/green\n  colorG = CHART_COLORS[3], // red\n  colorC = CHART_COLORS[1], // orange\n}) => {\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n\n  const positions = useMemo(() => data.map((item) => item.position), [data]);\n  const sequence = useMemo(() => data.map((item) => 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as const,\n      mode: \"lines\" as const,\n      name: \"G\",\n      line: { color: colorG, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakG, colorG],\n  );\n\n  const cTrace = useMemo(\n    () => ({\n      x: positions,\n      y: peakC,\n      type: \"scatter\" as const,\n      mode: \"lines\" as const,\n      name: \"C\",\n      line: { color: colorC, width: 2, shape: \"spline\" as const },\n    }),\n    [positions, peakC, colorC],\n  );\n\n  const maxValue = useMemo(\n    () => Math.max(...peakA, ...peakT, ...peakG, ...peakC),\n    [peakA, peakT, peakG, peakC],\n  );\n\n  useEffect(() => {\n    if (!plotRef.current || data.length === 0) return;\n\n    const plotData = [aTrace, tTrace, gTrace, cTrace];\n\n    const layout: Partial<Plotly.Layout> = {\n      width: width,\n      height: height - PLOT_HEIGHT_OFFSET,\n      margin: { l: 0, r: 0, b: 20, t: 10, pad: 0 },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: {\n        family: \"Inter, sans-serif\",\n      },\n      showlegend: false,\n      xaxis: {\n        showgrid: false,\n        zeroline: false,\n        showticklabels: false,\n        showline: false,\n        range: [Math.min(...positions), Math.max(...positions)],\n        fixedrange: true,\n      },\n      yaxis: {\n        showgrid: false,\n        zeroline: false,\n        showticklabels: false,\n        showline: false,\n        range: [0, maxValue * Y_AXIS_PADDING_FACTOR],\n        fixedrange: true,\n      },\n    };\n\n    const config = {\n      responsive: true,\n      displayModeBar: false,\n      displaylogo: false,\n      fillFrame: true,\n    };\n\n    Plotly.newPlot(plotRef.current, plotData, layout, config);\n\n    // Capture ref value for cleanup\n    const plotElement = plotRef.current;\n\n    return () => {\n      if (plotElement) {\n        Plotly.purge(plotElement);\n      }\n    };\n  }, [data, width, height, aTrace, tTrace, gTrace, cTrace, maxValue, positions, theme]);\n\n  if (data.length === 0) {\n    return <div className=\"chart-container\">No data available</div>;\n  }\n\n  const renderSequence = () => {\n    const renderSequenceLetters = () => {\n      const minPosition = Math.min(...positions);\n      const maxPosition = Math.max(...positions);\n      const chartWidth = width;\n\n      return (\n        <div className=\"sequence-letters-container\">\n          {sequence.map((base, index) => {\n            const position = positions[index];\n            const color =\n              base === \"A\"\n                ? colorA\n                : base === \"T\"\n                ? colorT\n                : base === \"G\"\n                ? colorG\n                : base === \"C\"\n                ? colorC\n                : theme.textColor;\n\n            const percentage =\n              (position - minPosition) / (maxPosition - minPosition);\n            const leftPosition = percentage * chartWidth;\n\n            return (\n              <span\n                key={`base-${index}`}\n                className=\"sequence-letter\"\n                style={{\n                  left: `${leftPosition}px`,\n                  color,\n                }}\n              >\n                {base}\n              </span>\n            );\n          })}\n        </div>\n      );\n    };\n\n    const renderPositionNumbers = () => {\n      const minPosition = Math.min(...positions);\n      const maxPosition = Math.max(...positions);\n      const chartWidth = width;\n\n      const startPos =\n        Math.ceil(minPosition / positionInterval) * positionInterval;\n\n      const regularPositionLabels: Array<{ position: number; label: string }> =\n        [];\n\n      for (let pos = startPos; pos <= maxPosition; pos += positionInterval) {\n        regularPositionLabels.push({\n          position: pos,\n          label: pos.toString(),\n        });\n      }\n\n      return (\n        <div className=\"position-numbers-container\">\n          {regularPositionLabels.map((label) => {\n            const percentage =\n              (label.position - minPosition) / (maxPosition - minPosition);\n            const leftPosition = percentage * chartWidth;\n\n            return (\n              <span\n                key={`pos-${label.position}`}\n                className=\"position-number\"\n                style={{\n                  left: `${leftPosition}px`,\n                }}\n              >\n                {label.label}\n              </span>\n            );\n          })}\n        </div>\n      );\n    };\n\n    return (\n      <div className=\"sequence-header\">\n        {renderSequenceLetters()}\n        {renderPositionNumbers()}\n      </div>\n    );\n  };\n\n  return (\n    <div className=\"chromatogram-container\" style={{ width, height }}>\n      {renderSequence()}\n      <div className=\"chromatogram-chart\">\n        <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n      </div>\n    </div>\n  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package/dist/components/charts/ChromatogramChart/ChromatogramChart.cjs

@@ -1,2 +1,2 @@
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 //# sourceMappingURL=ChromatogramChart.cjs.map

package/dist/components/charts/ChromatogramChart/ChromatogramChart.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"ChromatogramChart.cjs","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\n\nimport {\n  groupOverlappingPeaks,\n  createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n  validateSeriesData,\n  applyBaselineCorrection,\n  buildHoverExtraContent,\n  collectPeaksWithBoundaryData,\n  processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n  PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n};\n\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n  series,\n  width = 900,\n  height = 500,\n  title,\n  xAxisTitle = \"Retention Time (min)\",\n  yAxisTitle = \"Signal (mAU)\",\n  annotations = [],\n  xRange,\n  yRange,\n  showLegend = true,\n  showGridX = true,\n  showGridY = true,\n  showMarkers = false,\n  markerSize = 4,\n  showCrosshairs = false,\n  baselineCorrection = \"none\",\n  baselineWindowSize = 50,\n  peakDetectionOptions,\n  showPeakAreas = false,\n  boundaryMarkers = \"none\",\n  annotationOverlapThreshold = 0.4,\n  showExportButton = true,\n}) => {\n  // Derive peak detection state from options\n  const enablePeakDetection = peakDetectionOptions !== undefined;\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n\n  // Memoize processed series with baseline correction\n  const processedSeries = useMemo(() => {\n    return series.map((s) => {\n      const validated = validateSeriesData(s.x, s.y);\n      return {\n        ...s,\n        x: validated.x,\n        y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n      };\n    });\n  }, [series, baselineCorrection, baselineWindowSize]);\n\n  // Process user annotations to convert startX/endX to indices and compute areas\n  const processedAnnotations = useMemo(() => {\n    if (annotations.length === 0 || processedSeries.length === 0) {\n      return annotations;\n    }\n    // Use first series data for index lookup (user annotations apply to first series)\n    const { x, y } = processedSeries[0];\n    return processUserAnnotations(annotations, x, y);\n  }, [annotations, processedSeries]);\n\n  // Memoize peak detection results\n  const allDetectedPeaks = useMemo(() => {\n    const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n    if (enablePeakDetection && peakDetectionOptions) {\n      processedSeries.forEach((s, index) => {\n        const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n        if (detected.length > 0) {\n          peaks.push({ peaks: detected, seriesIndex: index });\n        }\n      });\n    }\n    return peaks;\n  }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n  useEffect(() => {\n    const currentRef = plotRef.current;\n    if (!currentRef || series.length === 0) return;\n\n    // Build trace data with auto-assigned colors\n    const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n      const traceColor = s.color || CHART_COLORS[index % CHART_COLORS.length];\n      const extraContent = buildHoverExtraContent(s.name, s.metadata);\n\n      const trace: Plotly.Data = {\n        x: s.x,\n        y: s.y,\n        type: \"scatter\" as const,\n        mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n        name: s.name,\n        line: {\n          color: traceColor,\n          width: 1.5,\n        },\n        hovertemplate: `%{x:.2f} ${xAxisTitle}<br>%{y:.2f} ${yAxisTitle}<extra>${extraContent}</extra>`,\n      };\n      if (showMarkers) {\n        trace.marker = {\n          size: markerSize,\n          color: traceColor,\n        };\n      }\n      return trace;\n    });\n\n    // Add peak boundary markers if enabled\n    if (boundaryMarkers !== \"none\") {\n      const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n      if (peaksWithData.length > 0) {\n        const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n        plotData.push(...boundaryTraces);\n      }\n    }\n\n    // Collect all peaks for unified staggering logic\n    const allPeaksWithMeta: PeakWithMeta[] = [];\n\n    // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n    processedAnnotations.forEach((ann) => {\n      allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n    });\n\n    // Add auto-detected peaks if enabled\n    if (showPeakAreas && enablePeakDetection) {\n      allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n        peaks.forEach((peak) => {\n          allPeaksWithMeta.push({ peak, seriesIndex });\n        });\n      });\n    }\n\n    // Group all overlapping peaks and create annotations with staggering\n    const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n    const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n    for (const group of groups) {\n      plotlyAnnotations.push(...createGroupAnnotations(group));\n    }\n\n    const layout: Partial<Plotly.Layout> = {\n      title: title\n        ? {\n            text: title,\n            font: {\n              size: 20,\n              family: \"Inter, sans-serif\",\n              color: theme.textColor,\n            },\n          }\n        : undefined,\n      width,\n      height,\n      margin: {\n        l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n        r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n        b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n        t: title ? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n        pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n      },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: { family: \"Inter, sans-serif\" },\n      hovermode: showCrosshairs ? \"x\" as const : \"x unified\" as const,\n      dragmode: \"zoom\" as const,\n      xaxis: {\n        title: {\n          text: xAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 15,\n        },\n        showgrid: showGridX,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: xRange,\n        autorange: !xRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      yaxis: {\n        title: {\n          text: yAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 10,\n        },\n        showgrid: showGridY,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: yRange,\n        autorange: !yRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      legend: {\n        x: 0.5,\n        y: -0.15,\n        xanchor: \"center\" as const,\n        yanchor: \"top\" as const,\n        orientation: \"h\" as const,\n        font: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n      },\n      showlegend: showLegend && series.length > 1,\n      annotations: plotlyAnnotations,\n    };\n\n    const config: Partial<Plotly.Config> = {\n      responsive: true,\n      displayModeBar: true,\n      displaylogo: false,\n      modeBarButtonsToRemove: [\n        \"lasso2d\",\n        \"select2d\",\n        ...(showExportButton ? [] : [\"toImage\"] as Plotly.ModeBarDefaultButtons[]),\n      ] as Plotly.ModeBarDefaultButtons[],\n      ...(showExportButton && {\n        toImageButtonOptions: {\n          format: \"png\",\n          filename: \"chromatogram\",\n          width: width,\n          height: height,\n        },\n      }),\n    };\n\n    Plotly.newPlot(currentRef, plotData, layout, config);\n\n    return () => {\n      if (currentRef) {\n        Plotly.purge(currentRef);\n      }\n    };\n  }, [\n    processedSeries, allDetectedPeaks, series.length, width, height, title, xAxisTitle, yAxisTitle,\n    processedAnnotations, xRange, yRange, showLegend, showGridX, showGridY, showMarkers, markerSize,\n    showCrosshairs, enablePeakDetection, peakDetectionOptions, showPeakAreas, boundaryMarkers,\n    annotationOverlapThreshold, showExportButton, theme,\n  ]);\n\n  return (\n    <div className=\"chromatogram-chart-container\">\n      <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n    </div>\n  );\n};\n\nexport { ChromatogramChart 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+{"version":3,"file":"ChromatogramChart.cjs","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { seriesColor } from \"../../../utils/colors\";\n\n\nimport {\n  groupOverlappingPeaks,\n  createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n  validateSeriesData,\n  applyBaselineCorrection,\n  buildHoverExtraContent,\n  collectPeaksWithBoundaryData,\n  processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n  PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n};\n\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n  series,\n  width = 900,\n  height = 500,\n  title,\n  xAxisTitle = \"Retention Time (min)\",\n  yAxisTitle = \"Signal (mAU)\",\n  annotations = [],\n  xRange,\n  yRange,\n  showLegend = true,\n  showGridX = true,\n  showGridY = true,\n  showMarkers = false,\n  markerSize = 4,\n  showCrosshairs = false,\n  baselineCorrection = \"none\",\n  baselineWindowSize = 50,\n  peakDetectionOptions,\n  showPeakAreas = false,\n  boundaryMarkers = \"none\",\n  annotationOverlapThreshold = 0.4,\n  showExportButton = true,\n}) => {\n  // Derive peak detection state from options\n  const enablePeakDetection = peakDetectionOptions !== undefined;\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n\n  // Memoize processed series with baseline correction\n  const processedSeries = useMemo(() => {\n    return series.map((s) => {\n      const validated = validateSeriesData(s.x, s.y);\n      return {\n        ...s,\n        x: validated.x,\n        y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n      };\n    });\n  }, [series, baselineCorrection, baselineWindowSize]);\n\n  // Process user annotations to convert startX/endX to indices and compute areas\n  const processedAnnotations = useMemo(() => {\n    if (annotations.length === 0 || processedSeries.length === 0) {\n      return annotations;\n    }\n    // Use first series data for index lookup (user annotations apply to first series)\n    const { x, y } = processedSeries[0];\n    return processUserAnnotations(annotations, x, y);\n  }, [annotations, processedSeries]);\n\n  // Memoize peak detection results\n  const allDetectedPeaks = useMemo(() => {\n    const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n    if (enablePeakDetection && peakDetectionOptions) {\n      processedSeries.forEach((s, index) => {\n        const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n        if (detected.length > 0) {\n          peaks.push({ peaks: detected, seriesIndex: index });\n        }\n      });\n    }\n    return peaks;\n  }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n  useEffect(() => {\n    const currentRef = plotRef.current;\n    if (!currentRef || series.length === 0) return;\n\n    // Build trace data with auto-assigned colors\n    const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n      const traceColor = seriesColor(index, s.color);\n      const extraContent = buildHoverExtraContent(s.name, s.metadata);\n\n      const trace: Plotly.Data = {\n        x: s.x,\n        y: s.y,\n        type: \"scatter\" as const,\n        mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n        name: s.name,\n        line: {\n          color: traceColor,\n          width: 1.5,\n        },\n        hovertemplate: `%{x:.2f} ${xAxisTitle}<br>%{y:.2f} ${yAxisTitle}<extra>${extraContent}</extra>`,\n      };\n      if (showMarkers) {\n        trace.marker = {\n          size: markerSize,\n          color: traceColor,\n        };\n      }\n      return trace;\n    });\n\n    // Add peak boundary markers if enabled\n    if (boundaryMarkers !== \"none\") {\n      const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n      if (peaksWithData.length > 0) {\n        const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n        plotData.push(...boundaryTraces);\n      }\n    }\n\n    // Collect all peaks for unified staggering logic\n    const allPeaksWithMeta: PeakWithMeta[] = [];\n\n    // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n    processedAnnotations.forEach((ann) => {\n      allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n    });\n\n    // Add auto-detected peaks if enabled\n    if (showPeakAreas && enablePeakDetection) {\n      allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n        peaks.forEach((peak) => {\n          allPeaksWithMeta.push({ peak, seriesIndex });\n        });\n      });\n    }\n\n    // Group all overlapping peaks and create annotations with staggering\n    const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n    const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n    for (const group of groups) {\n      plotlyAnnotations.push(...createGroupAnnotations(group));\n    }\n\n    const layout: Partial<Plotly.Layout> = {\n      title: title\n        ? {\n            text: title,\n            font: {\n              size: 20,\n              family: \"Inter, sans-serif\",\n              color: theme.textColor,\n            },\n          }\n        : undefined,\n      width,\n      height,\n      margin: {\n        l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n        r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n        b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n        t: title ? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n        pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n      },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: { family: \"Inter, sans-serif\" },\n      hovermode: showCrosshairs ? \"x\" as const : \"x unified\" as const,\n      dragmode: \"zoom\" as const,\n      xaxis: {\n        title: {\n          text: xAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 15,\n        },\n        showgrid: showGridX,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: xRange,\n        autorange: !xRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      yaxis: {\n        title: {\n          text: yAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 10,\n        },\n        showgrid: showGridY,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: yRange,\n        autorange: !yRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      legend: {\n        x: 0.5,\n        y: -0.15,\n        xanchor: \"center\" as const,\n        yanchor: \"top\" as const,\n        orientation: \"h\" as const,\n        font: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n      },\n      showlegend: showLegend && series.length > 1,\n      annotations: plotlyAnnotations,\n    };\n\n    const config: Partial<Plotly.Config> = {\n      responsive: true,\n      displayModeBar: true,\n      displaylogo: false,\n      modeBarButtonsToRemove: [\n        \"lasso2d\",\n        \"select2d\",\n        ...(showExportButton ? [] : [\"toImage\"] as Plotly.ModeBarDefaultButtons[]),\n      ] as Plotly.ModeBarDefaultButtons[],\n      ...(showExportButton && {\n        toImageButtonOptions: {\n          format: \"png\",\n          filename: \"chromatogram\",\n          width: width,\n          height: height,\n        },\n      }),\n    };\n\n    Plotly.newPlot(currentRef, plotData, layout, config);\n\n    return () => {\n      if (currentRef) {\n        Plotly.purge(currentRef);\n      }\n    };\n  }, [\n    processedSeries, allDetectedPeaks, series.length, width, height, title, xAxisTitle, yAxisTitle,\n    processedAnnotations, xRange, yRange, showLegend, showGridX, showGridY, showMarkers, markerSize,\n    showCrosshairs, enablePeakDetection, peakDetectionOptions, showPeakAreas, boundaryMarkers,\n    annotationOverlapThreshold, showExportButton, theme,\n  ]);\n\n  return (\n    <div className=\"chromatogram-chart-container\">\n      <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n    </div>\n  );\n};\n\nexport { ChromatogramChart };\n\n"],"names":["ChromatogramChart","series","width","height","title","xAxisTitle","yAxisTitle","annotations","xRange","yRange","showLegend","showGridX","showGridY","showMarkers","markerSize","showCrosshairs","baselineCorrection","baselineWindowSize","peakDetectionOptions","showPeakAreas","boundaryMarkers","annotationOverlapThreshold","showExportButton","enablePeakDetection","plotRef","useRef","theme","usePlotlyTheme","processedSeries","useMemo","s","validated","validateSeriesData","applyBaselineCorrection","processedAnnotations","x","y","processUserAnnotations","allDetectedPeaks","peaks","index","detected","detectPeaks","useEffect","currentRef","plotData","traceColor","seriesColor","extraContent","buildHoverExtraContent","trace","peaksWithData","collectPeaksWithBoundaryData","boundaryTraces","createBoundaryMarkerTraces","allPeaksWithMeta","ann","seriesIndex","peak","groups","groupOverlappingPeaks","plotlyAnnotations","group","createGroupAnnotations","layout","CHROMATOGRAM_LAYOUT","config","Plotly","jsx"],"mappings":"8ZA8CMA,EAAsD,CAAC,CAC3D,OAAAC,EACA,MAAAC,EAAQ,IACR,OAAAC,EAAS,IACT,MAAAC,EACA,WAAAC,EAAa,uBACb,WAAAC,EAAa,eAAA,YACbC,EAAc,CAAA,EACd,OAAAC,EACA,OAAAC,EACA,WAAAC,EAAa,GACb,UAAAC,EAAY,GACZ,UAAAC,EAAY,GACZ,YAAAC,EAAc,GACd,WAAAC,EAAa,EACb,eAAAC,EAAiB,GACjB,mBAAAC,EAAqB,OACrB,mBAAAC,EAAqB,GACrB,qBAAAC,EACA,cAAAC,EAAgB,GAAA,gBAChBC,EAAkB,OAClB,2BAAAC,EAA6B,GAC7B,iBAAAC,EAAmB,EACrB,IAAM,CAEJ,MAAMC,EAAsBL,IAAyB,OAC/CM,EAAUC,EAAAA,OAAuB,IAAI,EACrCC,EAAQC,EAAAA,eAAA,EAGRC,EAAkBC,EAAAA,QAAQ,IACvB5B,EAAO,IAAK6B,GAAM,CACvB,MAAMC,EAAYC,EAAAA,mBAAmBF,EAAE,EAAGA,EAAE,CAAC,EAC7C,MAAO,CACL,GAAGA,EACH,EAAGC,EAAU,EACb,EAAGE,EAAAA,wBAAwBF,EAAU,EAAGf,EAAoBC,CAAkB,CAAA,CAElF,CAAC,EACA,CAAChB,EAAQe,EAAoBC,CAAkB,CAAC,EAG7CiB,EAAuBL,EAAAA,QAAQ,IAAM,CACzC,GAAItB,EAAY,SAAW,GAAKqB,EAAgB,SAAW,EACzD,OAAOrB,EAGT,KAAM,CAAE,EAAA4B,EAAG,EAAAC,GAAMR,EAAgB,CAAC,EAClC,OAAOS,yBAAuB9B,EAAa4B,EAAGC,CAAC,CACjD,EAAG,CAAC7B,EAAaqB,CAAe,CAAC,EAG3BU,EAAmBT,EAAAA,QAAQ,IAAM,CACrC,MAAMU,EAA4D,CAAA,EAClE,OAAIhB,GAAuBL,GACzBU,EAAgB,QAAQ,CAACE,EAAGU,IAAU,CACpC,MAAMC,EAAWC,EAAAA,YAAYZ,EAAE,EAAGA,EAAE,EAAGZ,CAAoB,EACvDuB,EAAS,OAAS,GACpBF,EAAM,KAAK,CAAE,MAAOE,EAAU,YAAaD,EAAO,CAEtD,CAAC,EAEID,CACT,EAAG,CAACX,EAAiBL,EAAqBL,CAAoB,CAAC,EAE/DyB,OAAAA,EAAAA,UAAU,IAAM,CACd,MAAMC,EAAapB,EAAQ,QAC3B,GAAI,CAACoB,GAAc3C,EAAO,SAAW,EAAG,OAGxC,MAAM4C,EAA0BjB,EAAgB,IAAI,CAACE,EAAGU,IAAU,CAChE,MAAMM,EAAaC,EAAAA,YAAYP,EAAOV,EAAE,KAAK,EACvCkB,EAAeC,EAAAA,uBAAuBnB,EAAE,KAAMA,EAAE,QAAQ,EAExDoB,EAAqB,CACzB,EAAGpB,EAAE,EACL,EAAGA,EAAE,EACL,KAAM,UACN,KAAMjB,EAAc,gBAA2B,QAC/C,KAAMiB,EAAE,KACR,KAAM,CACJ,MAAOgB,EACP,MAAO,GAAA,EAET,cAAe,YAAYzC,CAAU,gBAAgBC,CAAU,UAAU0C,CAAY,UAAA,EAEvF,OAAInC,IACFqC,EAAM,OAAS,CACb,KAAMpC,EACN,MAAOgC,CAAA,GAGJI,CACT,CAAC,EAGD,GAAI9B,IAAoB,OAAQ,CAC9B,MAAM+B,EAAgBC,EAAAA,6BAA6Bd,EAAkBJ,EAAsBN,CAAe,EAC1G,GAAIuB,EAAc,OAAS,EAAG,CAC5B,MAAME,EAAiBC,EAAAA,2BAA2BH,CAAa,EAC/DN,EAAS,KAAK,GAAGQ,CAAc,CACjC,CACF,CAGA,MAAME,EAAmC,CAAA,EAGzCrB,EAAqB,QAASsB,GAAQ,CACpCD,EAAiB,KAAK,CAAE,KAAMC,EAAK,YAAa,GAAI,CACtD,CAAC,EAGGrC,GAAiBI,GACnBe,EAAiB,QAAQ,CAAC,CAAE,MAAAC,EAAO,YAAAkB,KAAkB,CACnDlB,EAAM,QAASmB,GAAS,CACtBH,EAAiB,KAAK,CAAE,KAAAG,EAAM,YAAAD,CAAA,CAAa,CAC7C,CAAC,CACH,CAAC,EAIH,MAAME,EAASC,EAAAA,sBAAsBL,EAAkBlC,CAA0B,EAC3EwC,EAAmD,CAAA,EAEzD,UAAWC,KAASH,EAClBE,EAAkB,KAAK,GAAGE,EAAAA,uBAAuBD,CAAK,CAAC,EAGzD,MAAME,EAAiC,CACrC,MAAO5D,EACH,CACE,KAAMA,EACN,KAAM,CACJ,KAAM,GACN,OAAQ,oBACR,MAAOsB,EAAM,SAAA,CACf,EAEF,OACJ,MAAAxB,EACA,OAAAC,EACA,OAAQ,CACN,EAAG8D,EAAAA,oBAAoB,YACvB,EAAGA,EAAAA,oBAAoB,aACvB,EAAGA,EAAAA,oBAAoB,cACvB,EAAG7D,EAAQ6D,EAAAA,oBAAoB,sBAAwBA,EAAAA,oBAAoB,oBAC3E,IAAKA,EAAAA,oBAAoB,UAAA,EAE3B,cAAevC,EAAM,QACrB,aAAcA,EAAM,OACpB,KAAM,CAAE,OAAQ,mBAAA,EAChB,UAAWX,EAAiB,IAAe,YAC3C,SAAU,OACV,MAAO,CACL,MAAO,CACL,KAAMV,EACN,KAAM,CAAE,KAAM,GAAI,MAAOqB,EAAM,cAAe,OAAQ,mBAAA,EACtD,SAAU,EAAA,EAEZ,SAAUf,EACV,UAAWe,EAAM,UACjB,UAAWA,EAAM,UACjB,UAAW,EACX,MAAOlB,EACP,UAAW,CAACA,EACZ,SAAU,GACV,SAAU,CAAE,KAAM,GAAI,MAAOkB,EAAM,UAAW,OAAQ,mBAAA,EACtD,WAAYX,EACZ,UAAW,SACX,UAAW,SACX,WAAYW,EAAM,WAClB,eAAgB,EAChB,UAAW,KAAA,EAEb,MAAO,CACL,MAAO,CACL,KAAMpB,EACN,KAAM,CAAE,KAAM,GAAI,MAAOoB,EAAM,cAAe,OAAQ,mBAAA,EACtD,SAAU,EAAA,EAEZ,SAAUd,EACV,UAAWc,EAAM,UACjB,UAAWA,EAAM,UACjB,UAAW,EACX,MAAOjB,EACP,UAAW,CAACA,EACZ,SAAU,GACV,SAAU,CAAE,KAAM,GAAI,MAAOiB,EAAM,UAAW,OAAQ,mBAAA,EACtD,WAAYX,EACZ,UAAW,SACX,UAAW,SACX,WAAYW,EAAM,WAClB,eAAgB,EAChB,UAAW,KAAA,EAEb,OAAQ,CACN,EAAG,GACH,EAAG,KACH,QAAS,SACT,QAAS,MACT,YAAa,IACb,KAAM,CAAE,KAAM,GAAI,MAAOA,EAAM,UAAW,OAAQ,mBAAA,CAAoB,EAExE,WAAYhB,GAAcT,EAAO,OAAS,EAC1C,YAAa4D,CAAA,EAGTK,EAAiC,CACrC,WAAY,GACZ,eAAgB,GAChB,YAAa,GACb,uBAAwB,CACtB,UACA,WACA,GAAI5C,EAAmB,CAAA,EAAK,CAAC,SAAS,CAAA,EAExC,GAAIA,GAAoB,CACtB,qBAAsB,CACpB,OAAQ,MACR,SAAU,eACV,MAAApB,EACA,OAAAC,CAAA,CACF,CACF,EAGF,OAAAgE,EAAO,QAAQvB,EAAYC,EAAUmB,EAAQE,CAAM,EAE5C,IAAM,CACPtB,GACFuB,EAAO,MAAMvB,CAAU,CAE3B,CACF,EAAG,CACDhB,EAAiBU,EAAkBrC,EAAO,OAAQC,EAAOC,EAAQC,EAAOC,EAAYC,EACpF4B,EAAsB1B,EAAQC,EAAQC,EAAYC,EAAWC,EAAWC,EAAaC,EACrFC,EAAgBQ,EAAqBL,EAAsBC,EAAeC,EAC1EC,EAA4BC,EAAkBI,CAAA,CAC/C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package/dist/components/charts/ChromatogramChart/ChromatogramChart.js

@@ -1,13 +1,13 @@
-import { jsx as D } from "react/jsx-runtime";
+import { jsx as S } from "react/jsx-runtime";
 import U from "plotly.js-dist";
-import { useRef as q, useMemo as A, useEffect as J } from "react";
-import { CHART_COLORS as W } from "../../../utils/colors.js";
+import { useRef as F, useMemo as A, useEffect as q } from "react";
+import { seriesColor as J } from "../../../utils/colors.js";
 import { groupOverlappingPeaks as K, createGroupAnnotations as Q } from "./annotations.js";
 import { createBoundaryMarkerTraces as V } from "./boundaryMarkers.js";
 import { CHROMATOGRAM_LAYOUT as a } from "./constants.js";
 import { validateSeriesData as Y, applyBaselineCorrection as Z, processUserAnnotations as X, buildHoverExtraContent as w, collectPeaksWithBoundaryData as ee } from "./dataProcessing.js";
 import { detectPeaks as oe } from "./peakDetection.js";
-import { usePlotlyTheme as te } from "../../../hooks/use-plotly-theme.js";
+import { usePlotlyTheme as re } from "../../../hooks/use-plotly-theme.js";
 const de = ({
   series: s,
   width: y = 900,
@@ -18,8 +18,8 @@ const de = ({
   annotations: m = [],
   xRange: I,
   yRange: C,
-  showLegend: P = !0,
-  showGridX: M = !0,
+  showLegend: M = !0,
+  showGridX: R = !0,
   showGridY: z = !0,
   showMarkers: T = !1,
   markerSize: B = 4,
@@ -29,33 +29,33 @@ const de = ({
   peakDetectionOptions: l,
   showPeakAreas: G = !1,
   boundaryMarkers: O = "none",
-  annotationOverlapThreshold: H = 0.4,
+  annotationOverlapThreshold: b = 0.4,
   showExportButton: _ = !0
 }) => {
-  const d = l !== void 0, b = q(null), e = te(), n = A(() => s.map((t) => {
-    const r = Y(t.x, t.y);
+  const d = l !== void 0, H = F(null), e = re(), n = A(() => s.map((r) => {
+    const t = Y(r.x, r.y);
     return {
-      ...t,
-      x: r.x,
-      y: Z(r.y, N, E)
+      ...r,
+      x: t.x,
+      y: Z(t.y, N, E)
     };
-  }), [s, N, E]), R = A(() => {
+  }), [s, N, E]), v = A(() => {
     if (m.length === 0 || n.length === 0)
       return m;
-    const { x: t, y: r } = n[0];
-    return X(m, t, r);
-  }, [m, n]), v = A(() => {
-    const t = [];
-    return d && l && n.forEach((r, i) => {
-      const u = oe(r.x, r.y, l);
-      u.length > 0 && t.push({ peaks: u, seriesIndex: i });
-    }), t;
+    const { x: r, y: t } = n[0];
+    return X(m, r, t);
+  }, [m, n]), P = A(() => {
+    const r = [];
+    return d && l && n.forEach((t, i) => {
+      const u = oe(t.x, t.y, l);
+      u.length > 0 && r.push({ peaks: u, seriesIndex: i });
+    }), r;
   }, [n, d, l]);
-  return J(() => {
-    const t = b.current;
-    if (!t || s.length === 0) return;
-    const r = n.map((o, c) => {
-      const g = o.color || W[c % W.length], F = w(o.name, o.metadata), S = {
+  return q(() => {
+    const r = H.current;
+    if (!r || s.length === 0) return;
+    const t = n.map((o, c) => {
+      const g = J(c, o.color), j = w(o.name, o.metadata), L = {
         x: o.x,
         y: o.y,
         type: "scatter",
@@ -65,32 +65,32 @@ const de = ({
           color: g,
           width: 1.5
         },
-        hovertemplate: `%{x:.2f} ${k}<br>%{y:.2f} ${x}<extra>${F}</extra>`
+        hovertemplate: `%{x:.2f} ${k}<br>%{y:.2f} ${x}<extra>${j}</extra>`
       };
-      return T && (S.marker = {
+      return T && (L.marker = {
         size: B,
         color: g
-      }), S;
+      }), L;
     });
     if (O !== "none") {
-      const o = ee(v, R, n);
+      const o = ee(P, v, n);
       if (o.length > 0) {
         const c = V(o);
-        r.push(...c);
+        t.push(...c);
       }
     }
     const i = [];
-    R.forEach((o) => {
+    v.forEach((o) => {
       i.push({ peak: o, seriesIndex: -1 });
-    }), G && d && v.forEach(({ peaks: o, seriesIndex: c }) => {
+    }), G && d && P.forEach(({ peaks: o, seriesIndex: c }) => {
       o.forEach((g) => {
         i.push({ peak: g, seriesIndex: c });
       });
     });
-    const u = K(i, H), L = [];
+    const u = K(i, b), D = [];
     for (const o of u)
-      L.push(...Q(o));
-    const $ = {
+      D.push(...Q(o));
+    const W = {
       title: f ? {
         text: f,
         font: {
@@ -119,7 +119,7 @@ const de = ({
           font: { size: 14, color: e.textSecondary, family: "Inter, sans-serif" },
           standoff: 15
         },
-        showgrid: M,
+        showgrid: R,
         gridcolor: e.gridColor,
         linecolor: e.lineColor,
         linewidth: 1,
@@ -163,9 +163,9 @@ const de = ({
         orientation: "h",
         font: { size: 12, color: e.textColor, family: "Inter, sans-serif" }
       },
-      showlegend: P && s.length > 1,
-      annotations: L
-    }, j = {
+      showlegend: M && s.length > 1,
+      annotations: D
+    }, $ = {
       responsive: !0,
       displayModeBar: !0,
       displaylogo: !1,
@@ -183,23 +183,23 @@ const de = ({
         }
       }
     };
-    return U.newPlot(t, r, $, j), () => {
-      t && U.purge(t);
+    return U.newPlot(r, t, W, $), () => {
+      r && U.purge(r);
     };
   }, [
     n,
-    v,
+    P,
     s.length,
     y,
     h,
     f,
     k,
     x,
-    R,
+    v,
     I,
     C,
-    P,
     M,
+    R,
     z,
     T,
     B,
@@ -208,10 +208,10 @@ const de = ({
     l,
     G,
     O,
-    H,
+    b,
     _,
     e
-  ]), /* @__PURE__ */ D("div", { className: "chromatogram-chart-container", children: /* @__PURE__ */ D("div", { ref: b, style: { width: "100%", height: "100%" } }) });
+  ]), /* @__PURE__ */ S("div", { className: "chromatogram-chart-container", children: /* @__PURE__ */ S("div", { ref: H, style: { width: "100%", height: "100%" } }) });
 };
 export {
   de as ChromatogramChart