@tetrascience-npm/tetrascience-react-ui 0.5.0-beta.20.1 → 0.5.0-beta.21.1

package/dist/components/charts/ChromatogramChart/ChromatogramChart.js

@@ -0,0 +1,219 @@
+import { jsx as D } from "react/jsx-runtime";
+import U from "plotly.js-dist";
+import { useRef as q, useMemo as A, useEffect as J } from "react";
+import { CHART_COLORS as W } from "../../../utils/colors.js";
+import { groupOverlappingPeaks as K, createGroupAnnotations as Q } from "./annotations.js";
+import { createBoundaryMarkerTraces as V } from "./boundaryMarkers.js";
+import { CHROMATOGRAM_LAYOUT as a } from "./constants.js";
+import { validateSeriesData as Y, applyBaselineCorrection as Z, processUserAnnotations as X, buildHoverExtraContent as w, collectPeaksWithBoundaryData as ee } from "./dataProcessing.js";
+import { detectPeaks as oe } from "./peakDetection.js";
+import { usePlotlyTheme as te } from "../../../hooks/use-plotly-theme.js";
+const de = ({
+  series: s,
+  width: y = 900,
+  height: h = 500,
+  title: f,
+  xAxisTitle: k = "Retention Time (min)",
+  yAxisTitle: x = "Signal (mAU)",
+  annotations: m = [],
+  xRange: I,
+  yRange: C,
+  showLegend: P = !0,
+  showGridX: M = !0,
+  showGridY: z = !0,
+  showMarkers: T = !1,
+  markerSize: B = 4,
+  showCrosshairs: p = !1,
+  baselineCorrection: N = "none",
+  baselineWindowSize: E = 50,
+  peakDetectionOptions: l,
+  showPeakAreas: G = !1,
+  boundaryMarkers: O = "none",
+  annotationOverlapThreshold: H = 0.4,
+  showExportButton: _ = !0
+}) => {
+  const d = l !== void 0, b = q(null), e = te(), n = A(() => s.map((t) => {
+    const r = Y(t.x, t.y);
+    return {
+      ...t,
+      x: r.x,
+      y: Z(r.y, N, E)
+    };
+  }), [s, N, E]), R = A(() => {
+    if (m.length === 0 || n.length === 0)
+      return m;
+    const { x: t, y: r } = n[0];
+    return X(m, t, r);
+  }, [m, n]), v = A(() => {
+    const t = [];
+    return d && l && n.forEach((r, i) => {
+      const u = oe(r.x, r.y, l);
+      u.length > 0 && t.push({ peaks: u, seriesIndex: i });
+    }), t;
+  }, [n, d, l]);
+  return J(() => {
+    const t = b.current;
+    if (!t || s.length === 0) return;
+    const r = n.map((o, c) => {
+      const g = o.color || W[c % W.length], F = w(o.name, o.metadata), S = {
+        x: o.x,
+        y: o.y,
+        type: "scatter",
+        mode: T ? "lines+markers" : "lines",
+        name: o.name,
+        line: {
+          color: g,
+          width: 1.5
+        },
+        hovertemplate: `%{x:.2f} ${k}<br>%{y:.2f} ${x}<extra>${F}</extra>`
+      };
+      return T && (S.marker = {
+        size: B,
+        color: g
+      }), S;
+    });
+    if (O !== "none") {
+      const o = ee(v, R, n);
+      if (o.length > 0) {
+        const c = V(o);
+        r.push(...c);
+      }
+    }
+    const i = [];
+    R.forEach((o) => {
+      i.push({ peak: o, seriesIndex: -1 });
+    }), G && d && v.forEach(({ peaks: o, seriesIndex: c }) => {
+      o.forEach((g) => {
+        i.push({ peak: g, seriesIndex: c });
+      });
+    });
+    const u = K(i, H), L = [];
+    for (const o of u)
+      L.push(...Q(o));
+    const $ = {
+      title: f ? {
+        text: f,
+        font: {
+          size: 20,
+          family: "Inter, sans-serif",
+          color: e.textColor
+        }
+      } : void 0,
+      width: y,
+      height: h,
+      margin: {
+        l: a.MARGIN_LEFT,
+        r: a.MARGIN_RIGHT,
+        b: a.MARGIN_BOTTOM,
+        t: f ? a.MARGIN_TOP_WITH_TITLE : a.MARGIN_TOP_NO_TITLE,
+        pad: a.MARGIN_PAD
+      },
+      paper_bgcolor: e.paperBg,
+      plot_bgcolor: e.plotBg,
+      font: { family: "Inter, sans-serif" },
+      hovermode: p ? "x" : "x unified",
+      dragmode: "zoom",
+      xaxis: {
+        title: {
+          text: k,
+          font: { size: 14, color: e.textSecondary, family: "Inter, sans-serif" },
+          standoff: 15
+        },
+        showgrid: M,
+        gridcolor: e.gridColor,
+        linecolor: e.lineColor,
+        linewidth: 1,
+        range: I,
+        autorange: !I,
+        zeroline: !1,
+        tickfont: { size: 12, color: e.textColor, family: "Inter, sans-serif" },
+        showspikes: p,
+        spikemode: "across",
+        spikesnap: "cursor",
+        spikecolor: e.spikeColor,
+        spikethickness: 1,
+        spikedash: "dot"
+      },
+      yaxis: {
+        title: {
+          text: x,
+          font: { size: 14, color: e.textSecondary, family: "Inter, sans-serif" },
+          standoff: 10
+        },
+        showgrid: z,
+        gridcolor: e.gridColor,
+        linecolor: e.lineColor,
+        linewidth: 1,
+        range: C,
+        autorange: !C,
+        zeroline: !1,
+        tickfont: { size: 12, color: e.textColor, family: "Inter, sans-serif" },
+        showspikes: p,
+        spikemode: "across",
+        spikesnap: "cursor",
+        spikecolor: e.spikeColor,
+        spikethickness: 1,
+        spikedash: "dot"
+      },
+      legend: {
+        x: 0.5,
+        y: -0.15,
+        xanchor: "center",
+        yanchor: "top",
+        orientation: "h",
+        font: { size: 12, color: e.textColor, family: "Inter, sans-serif" }
+      },
+      showlegend: P && s.length > 1,
+      annotations: L
+    }, j = {
+      responsive: !0,
+      displayModeBar: !0,
+      displaylogo: !1,
+      modeBarButtonsToRemove: [
+        "lasso2d",
+        "select2d",
+        ..._ ? [] : ["toImage"]
+      ],
+      ..._ && {
+        toImageButtonOptions: {
+          format: "png",
+          filename: "chromatogram",
+          width: y,
+          height: h
+        }
+      }
+    };
+    return U.newPlot(t, r, $, j), () => {
+      t && U.purge(t);
+    };
+  }, [
+    n,
+    v,
+    s.length,
+    y,
+    h,
+    f,
+    k,
+    x,
+    R,
+    I,
+    C,
+    P,
+    M,
+    z,
+    T,
+    B,
+    p,
+    d,
+    l,
+    G,
+    O,
+    H,
+    _,
+    e
+  ]), /* @__PURE__ */ D("div", { className: "chromatogram-chart-container", children: /* @__PURE__ */ D("div", { ref: b, style: { width: "100%", height: "100%" } }) });
+};
+export {
+  de as ChromatogramChart
+};
+//# sourceMappingURL=ChromatogramChart.js.map

package/dist/components/charts/ChromatogramChart/ChromatogramChart.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ChromatogramChart.js","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\n\nimport {\n  groupOverlappingPeaks,\n  createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n  validateSeriesData,\n  applyBaselineCorrection,\n  buildHoverExtraContent,\n  collectPeaksWithBoundaryData,\n  processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n  PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n};\n\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n  series,\n  width = 900,\n  height = 500,\n  title,\n  xAxisTitle = \"Retention Time (min)\",\n  yAxisTitle = \"Signal (mAU)\",\n  annotations = [],\n  xRange,\n  yRange,\n  showLegend = true,\n  showGridX = true,\n  showGridY = true,\n  showMarkers = false,\n  markerSize = 4,\n  showCrosshairs = false,\n  baselineCorrection = \"none\",\n  baselineWindowSize = 50,\n  peakDetectionOptions,\n  showPeakAreas = false,\n  boundaryMarkers = \"none\",\n  annotationOverlapThreshold = 0.4,\n  showExportButton = true,\n}) => {\n  // Derive peak detection state from options\n  const enablePeakDetection = peakDetectionOptions !== undefined;\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n\n  // Memoize processed series with baseline correction\n  const processedSeries = useMemo(() => {\n    return series.map((s) => {\n      const validated = validateSeriesData(s.x, s.y);\n      return {\n        ...s,\n        x: validated.x,\n        y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n      };\n    });\n  }, [series, baselineCorrection, baselineWindowSize]);\n\n  // Process user annotations to convert startX/endX to indices and compute areas\n  const processedAnnotations = useMemo(() => {\n    if (annotations.length === 0 || processedSeries.length === 0) {\n      return annotations;\n    }\n    // Use first series data for index lookup (user annotations apply to first series)\n    const { x, y } = processedSeries[0];\n    return processUserAnnotations(annotations, x, y);\n  }, [annotations, processedSeries]);\n\n  // Memoize peak detection results\n  const allDetectedPeaks = useMemo(() => {\n    const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n    if (enablePeakDetection && peakDetectionOptions) {\n      processedSeries.forEach((s, index) => {\n        const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n        if (detected.length > 0) {\n          peaks.push({ peaks: detected, seriesIndex: index });\n        }\n      });\n    }\n    return peaks;\n  }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n  useEffect(() => {\n    const currentRef = plotRef.current;\n    if (!currentRef || series.length === 0) return;\n\n    // Build trace data with auto-assigned colors\n    const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n      const traceColor = s.color || CHART_COLORS[index % CHART_COLORS.length];\n      const extraContent = buildHoverExtraContent(s.name, s.metadata);\n\n      const trace: Plotly.Data = {\n        x: s.x,\n        y: s.y,\n        type: \"scatter\" as const,\n        mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n        name: s.name,\n        line: {\n          color: traceColor,\n          width: 1.5,\n        },\n        hovertemplate: `%{x:.2f} ${xAxisTitle}<br>%{y:.2f} ${yAxisTitle}<extra>${extraContent}</extra>`,\n      };\n      if (showMarkers) {\n        trace.marker = {\n          size: markerSize,\n          color: traceColor,\n        };\n      }\n      return trace;\n    });\n\n    // Add peak boundary markers if enabled\n    if (boundaryMarkers !== \"none\") {\n      const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n      if (peaksWithData.length > 0) {\n        const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n        plotData.push(...boundaryTraces);\n      }\n    }\n\n    // Collect all peaks for unified staggering logic\n    const allPeaksWithMeta: PeakWithMeta[] = [];\n\n    // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n    processedAnnotations.forEach((ann) => {\n      allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n    });\n\n    // Add auto-detected peaks if enabled\n    if (showPeakAreas && enablePeakDetection) {\n      allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n        peaks.forEach((peak) => {\n          allPeaksWithMeta.push({ peak, seriesIndex });\n        });\n      });\n    }\n\n    // Group all overlapping peaks and create annotations with staggering\n    const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n    const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n    for (const group of groups) {\n      plotlyAnnotations.push(...createGroupAnnotations(group));\n    }\n\n    const layout: Partial<Plotly.Layout> = {\n      title: title\n        ? {\n            text: title,\n            font: {\n              size: 20,\n              family: \"Inter, sans-serif\",\n              color: theme.textColor,\n            },\n          }\n        : undefined,\n      width,\n      height,\n      margin: {\n        l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n        r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n        b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n        t: title ? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n        pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n      },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: { family: \"Inter, sans-serif\" },\n      hovermode: showCrosshairs ? \"x\" as const : \"x unified\" as const,\n      dragmode: \"zoom\" as const,\n      xaxis: {\n        title: {\n          text: xAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 15,\n        },\n        showgrid: showGridX,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: xRange,\n        autorange: !xRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      yaxis: {\n        title: {\n          text: yAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 10,\n        },\n        showgrid: showGridY,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: yRange,\n        autorange: !yRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      legend: {\n        x: 0.5,\n        y: -0.15,\n        xanchor: \"center\" as const,\n        yanchor: \"top\" as const,\n        orientation: \"h\" as const,\n        font: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n      },\n      showlegend: showLegend && series.length > 1,\n      annotations: plotlyAnnotations,\n    };\n\n    const config: Partial<Plotly.Config> = {\n      responsive: true,\n      displayModeBar: true,\n      displaylogo: false,\n      modeBarButtonsToRemove: [\n        \"lasso2d\",\n        \"select2d\",\n        ...(showExportButton ? [] : [\"toImage\"] as Plotly.ModeBarDefaultButtons[]),\n      ] as Plotly.ModeBarDefaultButtons[],\n      ...(showExportButton && {\n        toImageButtonOptions: {\n          format: \"png\",\n          filename: \"chromatogram\",\n          width: width,\n          height: height,\n        },\n      }),\n    };\n\n    Plotly.newPlot(currentRef, plotData, layout, config);\n\n    return () => {\n      if (currentRef) {\n        Plotly.purge(currentRef);\n      }\n    };\n  }, [\n    processedSeries, allDetectedPeaks, series.length, width, height, title, xAxisTitle, yAxisTitle,\n    processedAnnotations, xRange, yRange, showLegend, showGridX, showGridY, showMarkers, markerSize,\n    showCrosshairs, enablePeakDetection, peakDetectionOptions, showPeakAreas, boundaryMarkers,\n    annotationOverlapThreshold, showExportButton, theme,\n  ]);\n\n  return (\n    <div className=\"chromatogram-chart-container\">\n      <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n    </div>\n  );\n};\n\nexport { ChromatogramChart 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package/dist/components/charts/ChromatogramChart/annotations.cjs

@@ -0,0 +1,2 @@
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+//# sourceMappingURL=annotations.cjs.map

package/dist/components/charts/ChromatogramChart/annotations.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"annotations.cjs","sources":["../../../../src/components/charts/ChromatogramChart/annotations.ts"],"sourcesContent":["/**\n * Annotation utilities for ChromatogramChart\n */\n\nimport { COLORS, CHART_COLORS } from \"../../../utils/colors\";\n\nimport { CHROMATOGRAM_ANNOTATION } from \"./constants\";\n\nimport type { PeakAnnotation, PeakWithMeta } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/**\n * Annotation slot positions for peak labels\n */\nexport const ANNOTATION_SLOTS = {\n  default: { ax: 0, ay: -35 },\n  overlap: [\n    { ax: 50, ay: -35 }, // Right, level 1\n    { ax: -60, ay: -35 }, // Left, level 1\n    { ax: 70, ay: -55 }, // Right, level 2\n    { ax: -80, ay: -55 }, // Left, level 2\n    { ax: 50, ay: -75 }, // Right, level 3\n    { ax: -60, ay: -75 }, // Left, level 3\n  ],\n};\n\n/**\n * Group overlapping peaks by retention time (x) proximity\n */\nexport function groupOverlappingPeaks(\n  peaksWithMeta: PeakWithMeta[],\n  overlapThreshold: number\n): PeakWithMeta[][] {\n  const sorted = [...peaksWithMeta].sort((a, b) => a.peak.x - b.peak.x);\n\n  const groups: PeakWithMeta[][] = [];\n  let currentGroup: PeakWithMeta[] = [];\n\n  for (const current of sorted) {\n    if (currentGroup.length === 0) {\n      currentGroup.push(current);\n      continue;\n    }\n\n    const lastInGroup = currentGroup[currentGroup.length - 1];\n    const timeDiff = Math.abs(current.peak.x - lastInGroup.peak.x);\n\n    if (timeDiff < overlapThreshold) {\n      currentGroup.push(current);\n    } else {\n      groups.push(currentGroup);\n      currentGroup = [current];\n    }\n  }\n\n  if (currentGroup.length > 0) {\n    groups.push(currentGroup);\n  }\n\n  return groups;\n}\n\n/**\n * Create a Plotly annotation for a peak.\n * seriesIndex of -1 indicates a user-defined annotation (uses grey/black styling).\n */\nexport function createPeakAnnotation(\n  peak: PeakAnnotation,\n  seriesIndex: number,\n  slot: { ax: number; ay: number }\n): Partial<Plotly.Annotations> {\n  const isUserDefined = seriesIndex === -1;\n  const color = isUserDefined\n    ? 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package/dist/components/charts/ChromatogramChart/annotations.js

@@ -0,0 +1,73 @@
+import { COLORS as c, CHART_COLORS as l } from "../../../utils/colors.js";
+import { CHROMATOGRAM_ANNOTATION as x } from "./constants.js";
+const i = {
+  default: { ax: 0, ay: -35 },
+  overlap: [
+    { ax: 50, ay: -35 },
+    // Right, level 1
+    { ax: -60, ay: -35 },
+    // Left, level 1
+    { ax: 70, ay: -55 },
+    // Right, level 2
+    { ax: -80, ay: -55 },
+    // Left, level 2
+    { ax: 50, ay: -75 },
+    // Right, level 3
+    { ax: -60, ay: -75 }
+    // Left, level 3
+  ]
+};
+function y(t, n) {
+  const e = [...t].sort((a, s) => a.peak.x - s.peak.x), o = [];
+  let r = [];
+  for (const a of e) {
+    if (r.length === 0) {
+      r.push(a);
+      continue;
+    }
+    const s = r[r.length - 1];
+    Math.abs(a.peak.x - s.peak.x) < n ? r.push(a) : (o.push(r), r = [a]);
+  }
+  return r.length > 0 && o.push(r), o;
+}
+function f(t, n, e) {
+  const o = n === -1, r = o ? c.GREY_500 : l[n % l.length], a = o ? c.BLACK_900 : r, s = t.text ?? (t._computed?.area === void 0 ? "" : `Area: ${t._computed.area.toFixed(2)}`), u = o && t.ax !== void 0 ? t.ax : e.ax, d = o && t.ay !== void 0 ? t.ay : e.ay;
+  return {
+    x: t.x,
+    y: t.y,
+    text: s,
+    showarrow: !0,
+    arrowhead: 2,
+    arrowsize: 1,
+    arrowwidth: 1,
+    arrowcolor: r,
+    ax: u,
+    ay: d,
+    font: {
+      size: o ? x.USER_ANNOTATION_FONT_SIZE : x.AUTO_ANNOTATION_FONT_SIZE,
+      color: a,
+      family: "Inter, sans-serif"
+    },
+    bgcolor: c.WHITE,
+    borderpad: 2,
+    bordercolor: o ? void 0 : r,
+    borderwidth: o ? 0 : 1
+  };
+}
+function A(t) {
+  if (t.length === 1) {
+    const { peak: e, seriesIndex: o } = t[0];
+    return [f(e, o, i.default)];
+  }
+  return [...t].sort((e, o) => e.peak.y - o.peak.y).map(({ peak: e, seriesIndex: o }, r) => {
+    const a = i.overlap[r % i.overlap.length];
+    return f(e, o, a);
+  });
+}
+export {
+  i as ANNOTATION_SLOTS,
+  A as createGroupAnnotations,
+  f as createPeakAnnotation,
+  y as groupOverlappingPeaks
+};
+//# sourceMappingURL=annotations.js.map

package/dist/components/charts/ChromatogramChart/annotations.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"annotations.js","sources":["../../../../src/components/charts/ChromatogramChart/annotations.ts"],"sourcesContent":["/**\n * Annotation utilities for ChromatogramChart\n */\n\nimport { COLORS, CHART_COLORS } from \"../../../utils/colors\";\n\nimport { CHROMATOGRAM_ANNOTATION } from \"./constants\";\n\nimport type { PeakAnnotation, PeakWithMeta } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/**\n * Annotation slot positions for peak labels\n */\nexport const ANNOTATION_SLOTS = {\n  default: { ax: 0, ay: -35 },\n  overlap: [\n    { ax: 50, ay: -35 }, // Right, level 1\n    { ax: -60, ay: -35 }, // Left, level 1\n    { ax: 70, ay: -55 }, // Right, level 2\n    { ax: -80, ay: -55 }, // Left, level 2\n    { ax: 50, ay: -75 }, // Right, level 3\n    { ax: -60, ay: -75 }, // Left, level 3\n  ],\n};\n\n/**\n * Group overlapping peaks by retention time (x) proximity\n */\nexport function groupOverlappingPeaks(\n  peaksWithMeta: PeakWithMeta[],\n  overlapThreshold: number\n): PeakWithMeta[][] {\n  const sorted = [...peaksWithMeta].sort((a, b) => a.peak.x - b.peak.x);\n\n  const groups: PeakWithMeta[][] = [];\n  let currentGroup: PeakWithMeta[] = [];\n\n  for (const current of sorted) {\n    if (currentGroup.length === 0) {\n      currentGroup.push(current);\n      continue;\n    }\n\n    const lastInGroup = currentGroup[currentGroup.length - 1];\n    const timeDiff = Math.abs(current.peak.x - lastInGroup.peak.x);\n\n    if (timeDiff < overlapThreshold) {\n      currentGroup.push(current);\n    } else {\n      groups.push(currentGroup);\n      currentGroup = [current];\n    }\n  }\n\n  if (currentGroup.length > 0) {\n    groups.push(currentGroup);\n  }\n\n  return groups;\n}\n\n/**\n * Create a Plotly annotation for a peak.\n * seriesIndex of -1 indicates a user-defined annotation (uses grey/black styling).\n */\nexport function createPeakAnnotation(\n  peak: PeakAnnotation,\n  seriesIndex: number,\n  slot: { ax: number; ay: number }\n): Partial<Plotly.Annotations> {\n  const isUserDefined = seriesIndex === -1;\n  const color = isUserDefined\n    ? 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package/dist/components/charts/ChromatogramChart/boundaryMarkers.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const c=require("../../../utils/colors.cjs"),T=-5,m=-12,d=-16;function i(o,e,t,r){return t==="none"?[]:[{x:[o],y:[e],type:"scatter",mode:"markers",marker:{symbol:t==="diamond"?"diamond":"triangle-up",size:8,color:r},showlegend:!1,hoverinfo:"skip"}]}function A(o){const e=[];for(const{peaks:t,seriesIndex:r,x:s}of o){const a=c.CHART_COLORS[r%c.CHART_COLORS.length],u=T+r*d,R=m+r*d;for(const n of t){const k=n._computed?.startIndex??0,M=n._computed?.endIndex??0,_=s[k],l=s[M],p=n.startMarker??"triangle",f=n.endMarker??"diamond";e.push(...i(_,u,p,a)),e.push(...i(l,R,f,a))}}return e}exports.createBoundaryMarkerTraces=A;
+//# sourceMappingURL=boundaryMarkers.cjs.map

package/dist/components/charts/ChromatogramChart/boundaryMarkers.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"boundaryMarkers.cjs","sources":["../../../../src/components/charts/ChromatogramChart/boundaryMarkers.ts"],"sourcesContent":["/**\n * Boundary marker utilities for ChromatogramChart\n */\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\nimport type { PeakAnnotation, BoundaryMarkerType } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/** Base Y position for start boundary markers (below the x-axis) */\nconst BOUNDARY_MARKER_START_Y = -5;\n/** Y position for end boundary markers (below start markers) */\nconst BOUNDARY_MARKER_END_Y = -12;\n/** Y offset between series to prevent overlap */\nconst BOUNDARY_MARKER_SERIES_OFFSET = -16;\n\n/**\n * Create a marker trace for a boundary point.\n * Markers are placed on the x-axis below 0, staggered by series index.\n */\nfunction createMarkerTrace(\n  xPos: number,\n  yPos: number,\n  markerType: BoundaryMarkerType,\n  color: string\n): Plotly.Data[] {\n  if (markerType === \"none\") {\n    return [];\n  }\n\n  return [\n    {\n      x: [xPos],\n      y: [yPos],\n      type: \"scatter\" as const,\n      mode: \"markers\" as const,\n      marker: {\n        symbol: markerType === \"diamond\" ? (\"diamond\" as const) : (\"triangle-up\" as const),\n        size: 8,\n        color,\n      },\n      showlegend: false,\n      hoverinfo: \"skip\" as const,\n    },\n  ];\n}\n\n/**\n * Create boundary marker traces for peaks.\n * Uses per-peak startMarker/endMarker settings with defaults:\n * - startMarker: \"triangle\" (default)\n * - endMarker: \"diamond\" (default)\n */\nexport function createBoundaryMarkerTraces(\n  allPeaks: {\n    peaks: PeakAnnotation[];\n    seriesIndex: number;\n    x: number[];\n    y: number[];\n  }[]\n): Plotly.Data[] {\n  const traces: Plotly.Data[] = [];\n\n  for (const { peaks, seriesIndex, x } of allPeaks) {\n    const color = CHART_COLORS[seriesIndex % CHART_COLORS.length];\n    // Separate y positions for start vs end markers to prevent overlap when peaks are adjacent\n    // Also stagger by series index to prevent overlap between different traces\n    const startMarkerY = BOUNDARY_MARKER_START_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n    const endMarkerY = BOUNDARY_MARKER_END_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n\n    for (const peak of peaks) {\n      const startIdx = peak._computed?.startIndex ?? 0;\n      const endIdx = peak._computed?.endIndex ?? 0;\n      const startX = x[startIdx];\n      const endX = x[endIdx];\n\n      // Get marker types with defaults: triangle at start, diamond at end\n      const startMarkerType = peak.startMarker ?? \"triangle\";\n      const endMarkerType = peak.endMarker ?? \"diamond\";\n\n      // Create start boundary marker (upper row, staggered by series)\n      traces.push(...createMarkerTrace(startX, startMarkerY, startMarkerType, color));\n\n      // Create end boundary marker (lower row, staggered by series)\n      traces.push(...createMarkerTrace(endX, endMarkerY, endMarkerType, color));\n    }\n  }\n\n  return traces;\n}\n\n"],"names":["BOUNDARY_MARKER_START_Y","BOUNDARY_MARKER_END_Y","BOUNDARY_MARKER_SERIES_OFFSET","createMarkerTrace","xPos","yPos","markerType","color","createBoundaryMarkerTraces","allPeaks","traces","peaks","seriesIndex","x","CHART_COLORS","startMarkerY","endMarkerY","peak","startIdx","endIdx","startX","endX","startMarkerType","endMarkerType"],"mappings":"6HAUMA,EAA0B,GAE1BC,EAAwB,IAExBC,EAAgC,IAMtC,SAASC,EACPC,EACAC,EACAC,EACAC,EACe,CACf,OAAID,IAAe,OACV,CAAA,EAGF,CACL,CACE,EAAG,CAACF,CAAI,EACR,EAAG,CAACC,CAAI,EACR,KAAM,UACN,KAAM,UACN,OAAQ,CACN,OAAQC,IAAe,UAAa,UAAuB,cAC3D,KAAM,EACN,MAAAC,CAAA,EAEF,WAAY,GACZ,UAAW,MAAA,CACb,CAEJ,CAQO,SAASC,EACdC,EAMe,CACf,MAAMC,EAAwB,CAAA,EAE9B,SAAW,CAAE,MAAAC,EAAO,YAAAC,EAAa,EAAAC,CAAA,IAAOJ,EAAU,CAChD,MAAMF,EAAQO,EAAAA,aAAaF,EAAcE,EAAAA,aAAa,MAAM,EAGtDC,EAAef,EAA0BY,EAAcV,EACvDc,EAAaf,EAAwBW,EAAcV,EAEzD,UAAWe,KAAQN,EAAO,CACxB,MAAMO,EAAWD,EAAK,WAAW,YAAc,EACzCE,EAASF,EAAK,WAAW,UAAY,EACrCG,EAASP,EAAEK,CAAQ,EACnBG,EAAOR,EAAEM,CAAM,EAGfG,EAAkBL,EAAK,aAAe,WACtCM,EAAgBN,EAAK,WAAa,UAGxCP,EAAO,KAAK,GAAGP,EAAkBiB,EAAQL,EAAcO,EAAiBf,CAAK,CAAC,EAG9EG,EAAO,KAAK,GAAGP,EAAkBkB,EAAML,EAAYO,EAAehB,CAAK,CAAC,CAC1E,CACF,CAEA,OAAOG,CACT"}

package/dist/components/charts/ChromatogramChart/boundaryMarkers.js

@@ -0,0 +1,34 @@
+import { CHART_COLORS as c } from "../../../utils/colors.js";
+const x = -5, A = -12, d = -16;
+function i(o, e, t, r) {
+  return t === "none" ? [] : [
+    {
+      x: [o],
+      y: [e],
+      type: "scatter",
+      mode: "markers",
+      marker: {
+        symbol: t === "diamond" ? "diamond" : "triangle-up",
+        size: 8,
+        color: r
+      },
+      showlegend: !1,
+      hoverinfo: "skip"
+    }
+  ];
+}
+function E(o) {
+  const e = [];
+  for (const { peaks: t, seriesIndex: r, x: s } of o) {
+    const a = c[r % c.length], R = x + r * d, k = A + r * d;
+    for (const n of t) {
+      const p = n._computed?.startIndex ?? 0, _ = n._computed?.endIndex ?? 0, u = s[p], M = s[_], f = n.startMarker ?? "triangle", m = n.endMarker ?? "diamond";
+      e.push(...i(u, R, f, a)), e.push(...i(M, k, m, a));
+    }
+  }
+  return e;
+}
+export {
+  E as createBoundaryMarkerTraces
+};
+//# sourceMappingURL=boundaryMarkers.js.map

package/dist/components/charts/ChromatogramChart/boundaryMarkers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"boundaryMarkers.js","sources":["../../../../src/components/charts/ChromatogramChart/boundaryMarkers.ts"],"sourcesContent":["/**\n * Boundary marker utilities for ChromatogramChart\n */\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\nimport type { PeakAnnotation, BoundaryMarkerType } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/** Base Y position for start boundary markers (below the x-axis) */\nconst BOUNDARY_MARKER_START_Y = -5;\n/** Y position for end boundary markers (below start markers) */\nconst BOUNDARY_MARKER_END_Y = -12;\n/** Y offset between series to prevent overlap */\nconst BOUNDARY_MARKER_SERIES_OFFSET = -16;\n\n/**\n * Create a marker trace for a boundary point.\n * Markers are placed on the x-axis below 0, staggered by series index.\n */\nfunction createMarkerTrace(\n  xPos: number,\n  yPos: number,\n  markerType: BoundaryMarkerType,\n  color: string\n): Plotly.Data[] {\n  if (markerType === \"none\") {\n    return [];\n  }\n\n  return [\n    {\n      x: [xPos],\n      y: [yPos],\n      type: \"scatter\" as const,\n      mode: \"markers\" as const,\n      marker: {\n        symbol: markerType === \"diamond\" ? (\"diamond\" as const) : (\"triangle-up\" as const),\n        size: 8,\n        color,\n      },\n      showlegend: false,\n      hoverinfo: \"skip\" as const,\n    },\n  ];\n}\n\n/**\n * Create boundary marker traces for peaks.\n * Uses per-peak startMarker/endMarker settings with defaults:\n * - startMarker: \"triangle\" (default)\n * - endMarker: \"diamond\" (default)\n */\nexport function createBoundaryMarkerTraces(\n  allPeaks: {\n    peaks: PeakAnnotation[];\n    seriesIndex: number;\n    x: number[];\n    y: number[];\n  }[]\n): Plotly.Data[] {\n  const traces: Plotly.Data[] = [];\n\n  for (const { peaks, seriesIndex, x } of allPeaks) {\n    const color = CHART_COLORS[seriesIndex % CHART_COLORS.length];\n    // Separate y positions for start vs end markers to prevent overlap when peaks are adjacent\n    // Also stagger by series index to prevent overlap between different traces\n    const startMarkerY = BOUNDARY_MARKER_START_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n    const endMarkerY = BOUNDARY_MARKER_END_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n\n    for (const peak of peaks) {\n      const startIdx = peak._computed?.startIndex ?? 0;\n      const endIdx = peak._computed?.endIndex ?? 0;\n      const startX = x[startIdx];\n      const endX = x[endIdx];\n\n      // Get marker types with defaults: triangle at start, diamond at end\n      const startMarkerType = peak.startMarker ?? \"triangle\";\n      const endMarkerType = peak.endMarker ?? \"diamond\";\n\n      // Create start boundary marker (upper row, staggered by series)\n      traces.push(...createMarkerTrace(startX, startMarkerY, startMarkerType, color));\n\n      // Create end boundary marker (lower row, staggered by series)\n      traces.push(...createMarkerTrace(endX, endMarkerY, endMarkerType, color));\n    }\n  }\n\n  return traces;\n}\n\n"],"names":["BOUNDARY_MARKER_START_Y","BOUNDARY_MARKER_END_Y","BOUNDARY_MARKER_SERIES_OFFSET","createMarkerTrace","xPos","yPos","markerType","color","createBoundaryMarkerTraces","allPeaks","traces","peaks","seriesIndex","x","CHART_COLORS","startMarkerY","endMarkerY","peak","startIdx","endIdx","startX","endX","startMarkerType","endMarkerType"],"mappings":";AAUA,MAAMA,IAA0B,IAE1BC,IAAwB,KAExBC,IAAgC;AAMtC,SAASC,EACPC,GACAC,GACAC,GACAC,GACe;AACf,SAAID,MAAe,SACV,CAAA,IAGF;AAAA,IACL;AAAA,MACE,GAAG,CAACF,CAAI;AAAA,MACR,GAAG,CAACC,CAAI;AAAA,MACR,MAAM;AAAA,MACN,MAAM;AAAA,MACN,QAAQ;AAAA,QACN,QAAQC,MAAe,YAAa,YAAuB;AAAA,QAC3D,MAAM;AAAA,QACN,OAAAC;AAAA,MAAA;AAAA,MAEF,YAAY;AAAA,MACZ,WAAW;AAAA,IAAA;AAAA,EACb;AAEJ;AAQO,SAASC,EACdC,GAMe;AACf,QAAMC,IAAwB,CAAA;AAE9B,aAAW,EAAE,OAAAC,GAAO,aAAAC,GAAa,GAAAC,EAAA,KAAOJ,GAAU;AAChD,UAAMF,IAAQO,EAAaF,IAAcE,EAAa,MAAM,GAGtDC,IAAef,IAA0BY,IAAcV,GACvDc,IAAaf,IAAwBW,IAAcV;AAEzD,eAAWe,KAAQN,GAAO;AACxB,YAAMO,IAAWD,EAAK,WAAW,cAAc,GACzCE,IAASF,EAAK,WAAW,YAAY,GACrCG,IAASP,EAAEK,CAAQ,GACnBG,IAAOR,EAAEM,CAAM,GAGfG,IAAkBL,EAAK,eAAe,YACtCM,IAAgBN,EAAK,aAAa;AAGxC,MAAAP,EAAO,KAAK,GAAGP,EAAkBiB,GAAQL,GAAcO,GAAiBf,CAAK,CAAC,GAG9EG,EAAO,KAAK,GAAGP,EAAkBkB,GAAML,GAAYO,GAAehB,CAAK,CAAC;AAAA,IAC1E;AAAA,EACF;AAEA,SAAOG;AACT;"}

package/dist/components/charts/ChromatogramChart/constants.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const T={MARGIN_LEFT:70,MARGIN_RIGHT:30,MARGIN_BOTTOM:60,MARGIN_TOP_WITH_TITLE:50,MARGIN_TOP_NO_TITLE:30,MARGIN_PAD:5},O={USER_ANNOTATION_FONT_SIZE:11,AUTO_ANNOTATION_FONT_SIZE:10};exports.CHROMATOGRAM_ANNOTATION=O;exports.CHROMATOGRAM_LAYOUT=T;
+//# sourceMappingURL=constants.cjs.map

package/dist/components/charts/ChromatogramChart/constants.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.cjs","sources":["../../../../src/components/charts/ChromatogramChart/constants.ts"],"sourcesContent":["/**\n * Constants for ChromatogramChart component\n */\n\n/**\n * Layout constants for chart margins and spacing\n */\nexport const CHROMATOGRAM_LAYOUT = {\n  /** Left margin in pixels */\n  MARGIN_LEFT: 70,\n  /** Right margin in pixels */\n  MARGIN_RIGHT: 30,\n  /** Bottom margin in pixels */\n  MARGIN_BOTTOM: 60,\n  /** Top margin with title in pixels */\n  MARGIN_TOP_WITH_TITLE: 50,\n  /** Top margin without title in pixels */\n  MARGIN_TOP_NO_TITLE: 30,\n  /** Padding around plot area */\n  MARGIN_PAD: 5,\n} as const;\n\n/**\n * Annotation constants for peak labels and markers\n */\nexport const CHROMATOGRAM_ANNOTATION = {\n  /** Default vertical offset for annotation arrows (negative = above point) */\n  DEFAULT_ARROW_OFFSET_Y: -30,\n  /** Font size for user-defined annotations */\n  USER_ANNOTATION_FONT_SIZE: 11,\n  /** Font size for auto-detected peak annotations */\n  AUTO_ANNOTATION_FONT_SIZE: 10,\n} as const;\n\n"],"names":["CHROMATOGRAM_LAYOUT","CHROMATOGRAM_ANNOTATION"],"mappings":"gFAOO,MAAMA,EAAsB,CAEjC,YAAa,GAEb,aAAc,GAEd,cAAe,GAEf,sBAAuB,GAEvB,oBAAqB,GAErB,WAAY,CACd,EAKaC,EAA0B,CAIrC,0BAA2B,GAE3B,0BAA2B,EAC7B"}

package/dist/components/charts/ChromatogramChart/constants.js

@@ -0,0 +1,24 @@
+const T = {
+  /** Left margin in pixels */
+  MARGIN_LEFT: 70,
+  /** Right margin in pixels */
+  MARGIN_RIGHT: 30,
+  /** Bottom margin in pixels */
+  MARGIN_BOTTOM: 60,
+  /** Top margin with title in pixels */
+  MARGIN_TOP_WITH_TITLE: 50,
+  /** Top margin without title in pixels */
+  MARGIN_TOP_NO_TITLE: 30,
+  /** Padding around plot area */
+  MARGIN_PAD: 5
+}, A = {
+  /** Font size for user-defined annotations */
+  USER_ANNOTATION_FONT_SIZE: 11,
+  /** Font size for auto-detected peak annotations */
+  AUTO_ANNOTATION_FONT_SIZE: 10
+};
+export {
+  A as CHROMATOGRAM_ANNOTATION,
+  T as CHROMATOGRAM_LAYOUT
+};
+//# sourceMappingURL=constants.js.map

package/dist/components/charts/ChromatogramChart/constants.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.js","sources":["../../../../src/components/charts/ChromatogramChart/constants.ts"],"sourcesContent":["/**\n * Constants for ChromatogramChart component\n */\n\n/**\n * Layout constants for chart margins and spacing\n */\nexport const CHROMATOGRAM_LAYOUT = {\n  /** Left margin in pixels */\n  MARGIN_LEFT: 70,\n  /** Right margin in pixels */\n  MARGIN_RIGHT: 30,\n  /** Bottom margin in pixels */\n  MARGIN_BOTTOM: 60,\n  /** Top margin with title in pixels */\n  MARGIN_TOP_WITH_TITLE: 50,\n  /** Top margin without title in pixels */\n  MARGIN_TOP_NO_TITLE: 30,\n  /** Padding around plot area */\n  MARGIN_PAD: 5,\n} as const;\n\n/**\n * Annotation constants for peak labels and markers\n */\nexport const CHROMATOGRAM_ANNOTATION = {\n  /** Default vertical offset for annotation arrows (negative = above point) */\n  DEFAULT_ARROW_OFFSET_Y: -30,\n  /** Font size for user-defined annotations */\n  USER_ANNOTATION_FONT_SIZE: 11,\n  /** Font size for auto-detected peak annotations */\n  AUTO_ANNOTATION_FONT_SIZE: 10,\n} as const;\n\n"],"names":["CHROMATOGRAM_LAYOUT","CHROMATOGRAM_ANNOTATION"],"mappings":"AAOO,MAAMA,IAAsB;AAAA;AAAA,EAEjC,aAAa;AAAA;AAAA,EAEb,cAAc;AAAA;AAAA,EAEd,eAAe;AAAA;AAAA,EAEf,uBAAuB;AAAA;AAAA,EAEvB,qBAAqB;AAAA;AAAA,EAErB,YAAY;AACd,GAKaC,IAA0B;AAAA;AAAA,EAIrC,2BAA2B;AAAA;AAAA,EAE3B,2BAA2B;AAC7B;"}

package/dist/components/charts/ChromatogramChart/dataProcessing.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const u=require("./peakDetection.cjs");function s(t,i){if(t.length===0||t.length===1)return 0;let n=0,e=t.length-1;for(;n<e;){const o=Math.floor((n+e)/2);t[o]<i?n=o+1:e=o}return n>0&&Math.abs(t[n-1]-i)<Math.abs(t[n]-i)?n-1:n}function d(t,i,n){return t.map(e=>{if(e.startX!==void 0&&e.endX!==void 0){const o=s(i,e.startX),l=s(i,e.endX),r=s(i,e.x),a=e._computed?.area??u.calculatePeakArea(i,n,o,l);return{...e,_computed:{...e._computed,index:r,startIndex:o,endIndex:l,area:a}}}return e})}function h(t,i,n){const e=[];t.forEach(({peaks:l,seriesIndex:r})=>{e.push({peaks:l,seriesIndex:r,x:n[r].x,y:n[r].y})});const o=i.filter(l=>l._computed?.startIndex!==void 0&&l._computed?.endIndex!==void 0);return o.length>0&&n.length>0&&e.push({peaks:o,seriesIndex:0,x:n[0].x,y:n[0].y}),e}function f(t,i){if(!i)return t;const n=[];for(const[e,o]of Object.entries(i))if(o!=null&&o!==""){const l=e.replace(/([A-Z])/g," $1").replace(/^./,r=>r.toUpperCase()).trim();n.push(`${l}: ${String(o)}`)}return n.length>0?`${t}<br>${n.join("<br>")}`:t}function p(t,i){const n=Math.min(t.length,i.length),e=t.slice(0,n),l=i.slice(0,n).map(a=>Number.isFinite(a)?a:0);return{x:e.map(a=>Number.isFinite(a)?a:0),y:l}}function g(t,i,n=50){if(i==="none"||t.length===0)return t;if(i==="linear"){if(t.length===1)return[0];const e=(t[t.length-1]-t[0])/(t.length-1);return t.map((o,l)=>o-(t[0]+e*l))}if(i==="rolling"){const e=[],o=Math.floor(n/2);for(let l=0;l<t.length;l++){const r=Math.max(0,l-o),a=Math.min(t.length,l+o+1),c=t.slice(r,a);e.push(Math.min(...c))}return t.map((l,r)=>l-e[r])}return t}exports.applyBaselineCorrection=g;exports.buildHoverExtraContent=f;exports.collectPeaksWithBoundaryData=h;exports.findClosestIndex=s;exports.processUserAnnotations=d;exports.validateSeriesData=p;
+//# sourceMappingURL=dataProcessing.cjs.map

package/dist/components/charts/ChromatogramChart/dataProcessing.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"dataProcessing.cjs","sources":["../../../../src/components/charts/ChromatogramChart/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for ChromatogramChart\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? calculatePeakArea(xArray, yArray, startIndex, endIndex);\n\n      return {\n        ...ann,\n        _computed: {\n          ...ann._computed,\n          index,\n          startIndex,\n          endIndex,\n          area,\n        },\n      };\n    }\n    return ann;\n  });\n}\n\n/**\n * Collect peaks with boundary information from both auto-detected peaks and user-provided annotations.\n * User-provided annotations with startIndex/endIndex or startX/endX are included for boundary marker rendering.\n */\nexport function collectPeaksWithBoundaryData(\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[],\n  annotations: PeakAnnotation[],\n  processedSeries: { x: number[]; y: number[] }[]\n): PeakDataWithSeries[] {\n  const peaksWithData: PeakDataWithSeries[] = [];\n\n  // Add auto-detected peaks\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    peaksWithData.push({\n      peaks,\n      seriesIndex,\n      x: processedSeries[seriesIndex].x,\n      y: processedSeries[seriesIndex].y,\n    });\n  });\n\n  // Add user-provided annotations that have boundary info (_computed.startIndex and _computed.endIndex)\n  // Note: annotations with startX/endX should already be processed to have _computed fields\n  const annotationsWithBoundaries = annotations.filter(\n    (ann) => ann._computed?.startIndex !== undefined && ann._computed?.endIndex !== undefined\n  );\n  if (annotationsWithBoundaries.length > 0 && processedSeries.length > 0) {\n    peaksWithData.push({\n      peaks: annotationsWithBoundaries,\n      seriesIndex: 0, // User annotations apply to first series by default\n      x: processedSeries[0].x,\n      y: processedSeries[0].y,\n    });\n  }\n\n  return peaksWithData;\n}\n\n/**\n * Build the extra content for Plotly hovertemplate from series metadata.\n * Displays all metadata fields as key: value pairs.\n */\nexport function buildHoverExtraContent(\n  seriesName: string,\n  metadata?: Record<string, unknown>\n): string {\n  if (!metadata) return seriesName;\n\n  const metaLines: string[] = [];\n  for (const [key, value] of Object.entries(metadata)) {\n    if (value !== undefined && value !== null && value !== \"\") {\n      // Format the key as Title Case (e.g., \"sampleName\" -> \"Sample Name\")\n      const formattedKey = key\n        .replace(/([A-Z])/g, \" $1\")\n        .replace(/^./, (s) => s.toUpperCase())\n        .trim();\n      metaLines.push(`${formattedKey}: ${String(value)}`);\n    }\n  }\n\n  if (metaLines.length > 0) {\n    return `${seriesName}<br>${metaLines.join(\"<br>\")}`;\n  }\n  return seriesName;\n}\n\n/**\n * Validate and sanitize series data.\n * - Ensures x and y arrays have the same length (truncates to shorter)\n * - Replaces NaN and Infinity values with 0\n */\nexport function validateSeriesData(\n  x: number[],\n  y: number[]\n): { x: number[]; y: number[] } {\n  // Ensure arrays have same length\n  const length = Math.min(x.length, y.length);\n  const validX = x.slice(0, length);\n  const validY = y.slice(0, length);\n\n  // Sanitize NaN and Infinity values\n  const sanitizedY = validY.map((val) => (Number.isFinite(val) ? 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package/dist/components/charts/ChromatogramChart/dataProcessing.js

@@ -0,0 +1,90 @@
+import { calculatePeakArea as a } from "./peakDetection.js";
+function s(t, i) {
+  if (t.length === 0 || t.length === 1) return 0;
+  let e = 0, n = t.length - 1;
+  for (; e < n; ) {
+    const o = Math.floor((e + n) / 2);
+    t[o] < i ? e = o + 1 : n = o;
+  }
+  return e > 0 && Math.abs(t[e - 1] - i) < Math.abs(t[e] - i) ? e - 1 : e;
+}
+function f(t, i, e) {
+  return t.map((n) => {
+    if (n.startX !== void 0 && n.endX !== void 0) {
+      const o = s(i, n.startX), l = s(i, n.endX), r = s(i, n.x), c = n._computed?.area ?? a(i, e, o, l);
+      return {
+        ...n,
+        _computed: {
+          ...n._computed,
+          index: r,
+          startIndex: o,
+          endIndex: l,
+          area: c
+        }
+      };
+    }
+    return n;
+  });
+}
+function d(t, i, e) {
+  const n = [];
+  t.forEach(({ peaks: l, seriesIndex: r }) => {
+    n.push({
+      peaks: l,
+      seriesIndex: r,
+      x: e[r].x,
+      y: e[r].y
+    });
+  });
+  const o = i.filter(
+    (l) => l._computed?.startIndex !== void 0 && l._computed?.endIndex !== void 0
+  );
+  return o.length > 0 && e.length > 0 && n.push({
+    peaks: o,
+    seriesIndex: 0,
+    // User annotations apply to first series by default
+    x: e[0].x,
+    y: e[0].y
+  }), n;
+}
+function p(t, i) {
+  if (!i) return t;
+  const e = [];
+  for (const [n, o] of Object.entries(i))
+    if (o != null && o !== "") {
+      const l = n.replace(/([A-Z])/g, " $1").replace(/^./, (r) => r.toUpperCase()).trim();
+      e.push(`${l}: ${String(o)}`);
+    }
+  return e.length > 0 ? `${t}<br>${e.join("<br>")}` : t;
+}
+function g(t, i) {
+  const e = Math.min(t.length, i.length), n = t.slice(0, e), l = i.slice(0, e).map((c) => Number.isFinite(c) ? c : 0);
+  return { x: n.map((c) => Number.isFinite(c) ? c : 0), y: l };
+}
+function m(t, i, e = 50) {
+  if (i === "none" || t.length === 0) return t;
+  if (i === "linear") {
+    if (t.length === 1)
+      return [0];
+    const n = (t[t.length - 1] - t[0]) / (t.length - 1);
+    return t.map((o, l) => o - (t[0] + n * l));
+  }
+  if (i === "rolling") {
+    const n = [], o = Math.floor(e / 2);
+    for (let l = 0; l < t.length; l++) {
+      const r = Math.max(0, l - o), c = Math.min(t.length, l + o + 1), u = t.slice(r, c);
+      n.push(Math.min(...u));
+    }
+    return t.map((l, r) => l - n[r]);
+  }
+  return t;
+}
+export {
+  m as applyBaselineCorrection,
+  p as buildHoverExtraContent,
+  d as collectPeaksWithBoundaryData,
+  s as findClosestIndex,
+  f as processUserAnnotations,
+  g as validateSeriesData
+};
+//# sourceMappingURL=dataProcessing.js.map

package/dist/components/charts/ChromatogramChart/dataProcessing.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"dataProcessing.js","sources":["../../../../src/components/charts/ChromatogramChart/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for ChromatogramChart\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? 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package/dist/components/charts/ChromatogramChart/peakDetection.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});function M(o,t,n){let i=o[t],e=o[t];for(let l=t-1;l>=Math.max(0,t-n);l--)i=Math.min(i,o[l]);for(let l=t+1;l<Math.min(o.length,t+n);l++)e=Math.min(e,o[l]);return o[t]-Math.max(i,e)}function P(o,t){let n=t,i=t;for(let e=t-1;e>=0&&o[e]<=o[e+1];e--)n=e;for(let e=t+1;e<o.length&&o[e]<=o[e-1];e++)i=e;return{startIndex:n,endIndex:i}}function g(o,t,n,i){const e=Math.min(t[n],t[i]);let l=0;for(let r=n;r<i;r++){const s=o[r+1]-o[r],f=t[r]-e,a=t[r+1]-e;l+=(f+a)*s/2}return l}function b(o,t,n,i,e){const l=Math.min(t[i],t[e]),r=(t[n]+l)/2;let s=n,f=n;for(let a=n;a>=i;a--)if(t[a]<r){s=a;break}for(let a=n;a<=e;a++)if(t[a]<r){f=a;break}return o[f]-o[s]}function d(o,t){const n=[];for(const i of o)n.some(l=>Math.abs((l._computed?.index??0)-(i._computed?.index??0))<t)?n.length>0&&i.y>n[n.length-1].y&&(n.pop(),n.push(i)):n.push(i);return n.sort((i,e)=>i.x-e.x)}function B(o,t,n={}){const{minHeight:i=.05,minDistance:e=5,prominence:l=.02,relativeThreshold:r=!0}=n;if(t.length<3)return[];const s=Math.max(...t),f=r?i*s:i,a=r?l*s:l,j=e*3,m=[];for(let c=1;c<t.length-1;c++){if(!(t[c]>t[c-1]&&t[c]>t[c+1]&&t[c]>=f)||M(t,c,j)<a)continue;const{startIndex:u,endIndex:h}=P(t,c),H=g(o,t,u,h),A=b(o,t,c,u,h);m.push({x:o[c],y:t[c],_computed:{area:H,index:c,startIndex:u,endIndex:h,widthAtHalfMax:A}})}return d(m,e)}exports.calculatePeakArea=g;exports.calculateProminence=M;exports.calculateWidthAtHalfMax=b;exports.detectPeaks=B;exports.filterPeaksByDistance=d;exports.findPeakBoundaries=P;
+//# sourceMappingURL=peakDetection.cjs.map