@teselagen/sequence-utils 0.3.42-beta.1 → 0.3.42-beta.2

package/adjustAnnotationsToInsert.d.ts

@@ -1,2 +1,2 @@
 import { Annotation } from './types';
-export default function adjustAnnotationsToInsert(annotationsToBeAdjusted: Record<string, Annotation> | Annotation[], insertStart: number, insertLength: number): boolean[];
+export default function adjustAnnotationsToInsert(annotationsToBeAdjusted: Record<string, Annotation> | Annotation[], insertStart: number, insertLength: number): Annotation[];

package/index.cjs

@@ -6977,7 +6977,7 @@ function addSizeIdName(frag, sequenceLength) {
 }
 __name(addSizeIdName, "addSizeIdName");
 function isEnzymeType2S(e) {
-  return e.site.length < e.topSnipOffset || e.site.length < e.bottomSnipOffset;
+  return e.site.length < (e.topSnipOffset || 0) || e.site.length < (e.bottomSnipOffset || 0);
 }
 __name(isEnzymeType2S, "isEnzymeType2S");
 function insertGapsIntoRefSeq(refSeq, seqReads) {
@@ -7402,7 +7402,8 @@ function adjustAnnotationsToRotation(annotationsToBeAdjusted, positionToRotateTo
 }
 __name(adjustAnnotationsToRotation, "adjustAnnotationsToRotation");
 function adjustAnnotationsToInsert(annotationsToBeAdjusted, insertStart, insertLength) {
-  return map(annotationsToBeAdjusted, (annotation) => {
+  const annotations = Array.isArray(annotationsToBeAdjusted) ? annotationsToBeAdjusted : Object.values(annotationsToBeAdjusted);
+  return annotations.map((annotation) => {
     return __spreadValues(__spreadValues({}, adjustRangeToInsert(annotation, insertStart, insertLength)), annotation.locations && {
       locations: annotation.locations.map(
         (loc) => adjustRangeToInsert(loc, insertStart, insertLength)

package/index.js

@@ -6975,7 +6975,7 @@ function addSizeIdName(frag, sequenceLength) {
 }
 __name(addSizeIdName, "addSizeIdName");
 function isEnzymeType2S(e) {
-  return e.site.length < e.topSnipOffset || e.site.length < e.bottomSnipOffset;
+  return e.site.length < (e.topSnipOffset || 0) || e.site.length < (e.bottomSnipOffset || 0);
 }
 __name(isEnzymeType2S, "isEnzymeType2S");
 function insertGapsIntoRefSeq(refSeq, seqReads) {
@@ -7400,7 +7400,8 @@ function adjustAnnotationsToRotation(annotationsToBeAdjusted, positionToRotateTo
 }
 __name(adjustAnnotationsToRotation, "adjustAnnotationsToRotation");
 function adjustAnnotationsToInsert(annotationsToBeAdjusted, insertStart, insertLength) {
-  return map(annotationsToBeAdjusted, (annotation) => {
+  const annotations = Array.isArray(annotationsToBeAdjusted) ? annotationsToBeAdjusted : Object.values(annotationsToBeAdjusted);
+  return annotations.map((annotation) => {
     return __spreadValues(__spreadValues({}, adjustRangeToInsert(annotation, insertStart, insertLength)), annotation.locations && {
       locations: annotation.locations.map(
         (loc) => adjustRangeToInsert(loc, insertStart, insertLength)

package/index.umd.cjs

@@ -6979,7 +6979,7 @@ var __name = (target, value) => __defProp(target, "name", { value, configurable:
   }
   __name(addSizeIdName, "addSizeIdName");
   function isEnzymeType2S(e) {
-    return e.site.length < e.topSnipOffset || e.site.length < e.bottomSnipOffset;
+    return e.site.length < (e.topSnipOffset || 0) || e.site.length < (e.bottomSnipOffset || 0);
   }
   __name(isEnzymeType2S, "isEnzymeType2S");
   function insertGapsIntoRefSeq(refSeq, seqReads) {
@@ -7404,7 +7404,8 @@ var __name = (target, value) => __defProp(target, "name", { value, configurable:
   }
   __name(adjustAnnotationsToRotation, "adjustAnnotationsToRotation");
   function adjustAnnotationsToInsert(annotationsToBeAdjusted, insertStart, insertLength) {
-    return map(annotationsToBeAdjusted, (annotation) => {
+    const annotations = Array.isArray(annotationsToBeAdjusted) ? annotationsToBeAdjusted : Object.values(annotationsToBeAdjusted);
+    return annotations.map((annotation) => {
       return __spreadValues(__spreadValues({}, adjustRangeToInsert(annotation, insertStart, insertLength)), annotation.locations && {
         locations: annotation.locations.map(
           (loc) => adjustRangeToInsert(loc, insertStart, insertLength)

package/package.json

@@ -1,10 +1,10 @@
 {
   "name": "@teselagen/sequence-utils",
-  "version": "0.3.42-beta.1",
+  "version": "0.3.42-beta.2",
   "repository": "https://github.com/TeselaGen/tg-oss",
   "type": "module",
   "dependencies": {
-    "@teselagen/range-utils": "0.3.20-beta.1",
+    "@teselagen/range-utils": "0.3.20-beta.2",
     "escape-string-regexp": "5.0.0",
     "jsondiffpatch": "0.7.3",
     "lodash-es": "^4.17.21",

package/src/adjustAnnotationsToInsert.ts

@@ -1,13 +1,15 @@
 import { adjustRangeToInsert } from "@teselagen/range-utils";
-import { map } from "lodash-es";
 import { Annotation } from "./types";
 
 export default function adjustAnnotationsToInsert(
   annotationsToBeAdjusted: Record<string, Annotation> | Annotation[],
   insertStart: number,
   insertLength: number
-) {
-  return map(annotationsToBeAdjusted, (annotation: Annotation) => {
+): Annotation[] {
+  const annotations = Array.isArray(annotationsToBeAdjusted)
+    ? annotationsToBeAdjusted
+    : Object.values(annotationsToBeAdjusted);
+  return annotations.map((annotation: Annotation) => {
     return {
       ...adjustRangeToInsert(annotation, insertStart, insertLength),
       ...(annotation.locations && {

package/src/isEnzymeType2S.ts

@@ -1,5 +1,8 @@
 import { RestrictionEnzyme } from "./types";
 
 export default function isEnzymeType2S(e: RestrictionEnzyme) {
-  return e.site.length < e.topSnipOffset || e.site.length < e.bottomSnipOffset;
+  return (
+    e.site.length < (e.topSnipOffset || 0) ||
+    e.site.length < (e.bottomSnipOffset || 0)
+  );
 }

package/src/shiftAnnotationsByLen.ts

@@ -1,6 +1,6 @@
 import { modifiableTypes } from "./annotationTypes";
 import adjustAnnotationsToInsert from "./adjustAnnotationsToInsert";
-import { SequenceData } from "./types";
+import { SequenceData, Annotation } from "./types";
 
 export default function shiftAnnotationsByLen({
   seqData,
@@ -15,7 +15,7 @@ export default function shiftAnnotationsByLen({
     const existingAnnotations = seqData[annotationType];
     if (existingAnnotations) {
       seqData[annotationType] = adjustAnnotationsToInsert(
-        existingAnnotations,
+        existingAnnotations as Annotation[] | Record<string, Annotation>,
         caretPosition,
         insertLength
       );

package/src/types.ts

@@ -1,4 +1,5 @@
 import type { Range } from "@teselagen/range-utils";
+export type { Range };
 
 export interface Annotation extends Range {
   id?: string | number;

package/types.d.ts

@@ -1,4 +1,5 @@
 import { Range } from '../../range-utils/src/index.ts';
+export type { Range };
 export interface Annotation extends Range {
     id?: string | number;
     name?: string;