@teselagen/sequence-utils 0.3.26 → 0.3.27

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Files changed (6) hide show
  1. package/index.cjs +1 -1
  2. package/index.js +1 -1
  3. package/index.umd.cjs +1 -1
  4. package/package.json +1 -1
  5. package/src/calculateTm.js +1 -1
  6. package/src/getReverseComplementSequenceAndAnnotations.test.js +27 -29
package/index.cjs CHANGED
@@ -9517,7 +9517,7 @@ const calcTmMethods = {
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  * return - Temperature for the given sequence, in Celsius.
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  */
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  calculateTemperature: function(_sequence, { type, A, R, primerConc, monovalentCationConc } = {}) {
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- const sequence = _sequence.toLowerCase();
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+ const sequence = (_sequence || "").toLowerCase();
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  if (typeof type === "undefined") {
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  type = this.TABLE_BRESLAUER;
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  } else if (type != this.TABLE_BRESLAUER && type != this.TABLE_UNIFIED && type != this.TABLE_SUGIMOTO) {
package/index.js CHANGED
@@ -9515,7 +9515,7 @@ const calcTmMethods = {
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  * return - Temperature for the given sequence, in Celsius.
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  */
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  calculateTemperature: function(_sequence, { type, A, R, primerConc, monovalentCationConc } = {}) {
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- const sequence = _sequence.toLowerCase();
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+ const sequence = (_sequence || "").toLowerCase();
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  if (typeof type === "undefined") {
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  type = this.TABLE_BRESLAUER;
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  } else if (type != this.TABLE_BRESLAUER && type != this.TABLE_UNIFIED && type != this.TABLE_SUGIMOTO) {
package/index.umd.cjs CHANGED
@@ -9519,7 +9519,7 @@ var __name = (target, value) => __defProp(target, "name", { value, configurable:
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  * return - Temperature for the given sequence, in Celsius.
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  */
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  calculateTemperature: function(_sequence, { type, A, R, primerConc, monovalentCationConc } = {}) {
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- const sequence = _sequence.toLowerCase();
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+ const sequence = (_sequence || "").toLowerCase();
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  if (typeof type === "undefined") {
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  type = this.TABLE_BRESLAUER;
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  } else if (type != this.TABLE_BRESLAUER && type != this.TABLE_UNIFIED && type != this.TABLE_SUGIMOTO) {
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@teselagen/sequence-utils",
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- "version": "0.3.26",
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+ "version": "0.3.27",
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  "dependencies": {
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  "@teselagen/range-utils": "0.3.7",
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  "bson-objectid": "^2.0.4",
package/src/calculateTm.js CHANGED
@@ -27,7 +27,7 @@ const calcTmMethods = {
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  _sequence,
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  { type, A, R, primerConc, monovalentCationConc } = {}
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  ) {
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- const sequence = _sequence.toLowerCase();
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+ const sequence = (_sequence || "").toLowerCase();
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  if (typeof type === "undefined") {
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  // type = this.TABLE_SUGIMOTO ;
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  // type = this.TABLE_UNIFIED;
package/src/getReverseComplementSequenceAndAnnotations.test.js CHANGED
@@ -90,35 +90,33 @@ describe("getReverseComplementSequenceAndAnnotations", () => {
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  });
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  });
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  it("handles reverse complementing a feature with locations correctly", () => {
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- const newSeq = getReverseComplementSequenceAndAnnotations(
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- {
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- sequence: "aaatttcccgttttttt",
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- // 01234567890123456
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- // fffffff
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- // lll ll
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- // after:
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- // 65432109876543210
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- // fffffff
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- // ll lll
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- circular: true,
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- features: [
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- {
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- start: 1,
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- end: 7,
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- locations: [
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- {
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- start: 1,
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- end: 3
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- },
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- {
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- start: 6,
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- end: 7
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- }
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- ]
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- }
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- ]
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- },
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- );
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+ const newSeq = getReverseComplementSequenceAndAnnotations({
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+ sequence: "aaatttcccgttttttt",
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+ // 01234567890123456
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+ // fffffff
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+ // lll ll
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+ // after:
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+ // 65432109876543210
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+ // fffffff
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+ // ll lll
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+ circular: true,
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+ features: [
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+ {
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+ start: 1,
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+ end: 7,
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+ locations: [
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+ {
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+ start: 1,
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+ end: 3
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+ },
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+ {
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+ start: 6,
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+ end: 7
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+ }
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+ ]
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+ }
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+ ]
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+ });
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  newSeq.should.containSubset({
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  // sequence: "tttaaacggg",
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  features: [