@teselagen/sequence-utils 0.3.13 → 0.3.14

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Files changed (6) hide show
  1. package/index.js +4 -1
  2. package/index.mjs +4 -1
  3. package/index.umd.js +4 -1
  4. package/package.json +1 -1
  5. package/src/getAminoAcidStringFromSequenceString.js +5 -1
  6. package/src/getAminoAcidStringFromSequenceString.test.js +1 -0
package/index.js CHANGED
@@ -21356,10 +21356,13 @@ function getAminoAcidStringFromSequenceString(sequenceString) {
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  );
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  const aaArray = [];
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  let aaString = "";
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- aminoAcidsPerBase.forEach((aa) => {
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+ aminoAcidsPerBase.forEach((aa, index) => {
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  if (!aa.fullCodon) {
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  return;
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  }
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+ if (index === aminoAcidsPerBase.length - 1 && aa.aminoAcid.value === "*") {
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+ return;
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+ }
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  aaArray[aa.aminoAcidIndex] = aa.aminoAcid.value;
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  });
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  aaString = aaArray.join("");
package/index.mjs CHANGED
@@ -21354,10 +21354,13 @@ function getAminoAcidStringFromSequenceString(sequenceString) {
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  );
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  const aaArray = [];
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  let aaString = "";
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- aminoAcidsPerBase.forEach((aa) => {
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+ aminoAcidsPerBase.forEach((aa, index) => {
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  if (!aa.fullCodon) {
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  return;
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  }
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+ if (index === aminoAcidsPerBase.length - 1 && aa.aminoAcid.value === "*") {
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+ return;
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+ }
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  aaArray[aa.aminoAcidIndex] = aa.aminoAcid.value;
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  });
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  aaString = aaArray.join("");
package/index.umd.js CHANGED
@@ -21358,10 +21358,13 @@ var __name = (target, value) => __defProp(target, "name", { value, configurable:
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  );
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  const aaArray = [];
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  let aaString = "";
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- aminoAcidsPerBase.forEach((aa) => {
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+ aminoAcidsPerBase.forEach((aa, index) => {
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  if (!aa.fullCodon) {
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  return;
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  }
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+ if (index === aminoAcidsPerBase.length - 1 && aa.aminoAcid.value === "*") {
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+ return;
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+ }
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  aaArray[aa.aminoAcidIndex] = aa.aminoAcid.value;
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  });
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  aaString = aaArray.join("");
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@teselagen/sequence-utils",
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- "version": "0.3.13",
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+ "version": "0.3.14",
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  "dependencies": {
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  "@teselagen/range-utils": "0.3.7",
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  "bson-objectid": "^2.0.4",
package/src/getAminoAcidStringFromSequenceString.js CHANGED
@@ -7,10 +7,14 @@ export default function getAminoAcidStringFromSequenceString(sequenceString) {
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  );
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  const aaArray = [];
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  let aaString = "";
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- aminoAcidsPerBase.forEach(aa => {
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+ aminoAcidsPerBase.forEach((aa, index) => {
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  if (!aa.fullCodon) {
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  return;
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  }
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+ // Check if the current amino acid is the last in the sequence and is a stop codon
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+ if (index === aminoAcidsPerBase.length - 1 && aa.aminoAcid.value === '*') {
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+ return;
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+ }
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  aaArray[aa.aminoAcidIndex] = aa.aminoAcid.value;
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  });
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  aaString = aaArray.join("");
package/src/getAminoAcidStringFromSequenceString.test.js CHANGED
@@ -14,5 +14,6 @@ describe("getAminoAcidStringFromSequenceString", () => {
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  assert.equal("MM", getAminoAcidStringFromSequenceString("atgatg"));
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  assert.equal("M--", getAminoAcidStringFromSequenceString("atg------"));
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  assert.equal("", getAminoAcidStringFromSequenceString("at"));
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+ assert.equal("MTNYNQKNEN", getAminoAcidStringFromSequenceString("atgactaattataatcaaaaaaatgaaaattaa"));
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  });
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  });