@teselagen/sequence-utils 0.1.12 → 0.1.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. package/addGapsToSeqReads.test.d.ts +1 -0
  2. package/adjustBpsToReplaceOrInsert.test.d.ts +1 -0
  3. package/aminoAcidToDnaRna.test.d.ts +1 -0
  4. package/annotateSingleSeq.test.d.ts +1 -0
  5. package/autoAnnotate.test.d.ts +1 -0
  6. package/bioData.d.ts +192 -192
  7. package/calculateNebTa.test.d.ts +1 -0
  8. package/calculateNebTm.test.d.ts +1 -0
  9. package/calculatePercentGC.test.d.ts +1 -0
  10. package/calculateTm.test.d.ts +1 -0
  11. package/computeDigestFragments.test.d.ts +1 -0
  12. package/condensePairwiseAlignmentDifferences.test.d.ts +1 -0
  13. package/convertAACaretPositionOrRangeToDna.test.d.ts +1 -0
  14. package/convertDnaCaretPositionOrRangeToAA.test.d.ts +1 -0
  15. package/cutSequenceByRestrictionEnzyme.test.d.ts +1 -0
  16. package/deleteSequenceDataAtRange.test.d.ts +1 -0
  17. package/diffUtils.test.d.ts +1 -0
  18. package/doesEnzymeChopOutsideOfRecognitionSite.test.d.ts +1 -0
  19. package/featureTypesAndColors.test.d.ts +1 -0
  20. package/filterAminoAcidSequenceString.test.d.ts +1 -0
  21. package/filterSequenceString.test.d.ts +1 -0
  22. package/findNearestRangeOfSequenceOverlapToPosition.test.d.ts +1 -0
  23. package/findSequenceMatches.test.d.ts +1 -0
  24. package/generateSequenceData.test.d.ts +1 -0
  25. package/getAllInsertionsInSeqReads.test.d.ts +1 -0
  26. package/getAminoAcidDataForEachBaseOfDna.test.d.ts +1 -0
  27. package/getAminoAcidStringFromSequenceString.test.d.ts +1 -0
  28. package/getDigestFragmentsForRestrictionEnzymes.test.d.ts +1 -0
  29. package/getInsertBetweenVals.test.d.ts +1 -0
  30. package/getLeftAndRightOfSequenceInRangeGivenPosition.test.d.ts +1 -0
  31. package/getMassofAaString.test.d.ts +1 -0
  32. package/getOrfsFromSequence.test.d.ts +1 -0
  33. package/getOverlapBetweenTwoSequences.d.ts +1 -1
  34. package/getOverlapBetweenTwoSequences.test.d.ts +1 -0
  35. package/getPossiblePartsFromSequenceAndEnzymes.test.d.ts +1 -0
  36. package/getReverseAminoAcidStringFromSequenceString.test.d.ts +1 -0
  37. package/getReverseComplementAnnotation.test.d.ts +1 -0
  38. package/getReverseComplementSequenceAndAnnotations.test.d.ts +1 -0
  39. package/getReverseComplementSequenceString.test.d.ts +1 -0
  40. package/getReverseSequenceString.test.d.ts +1 -0
  41. package/getSequenceDataBetweenRange.test.d.ts +1 -0
  42. package/getVirtualDigest.test.d.ts +1 -0
  43. package/guessIfSequenceIsDnaAndNotProtein.test.d.ts +1 -0
  44. package/index.d.ts +7 -7
  45. package/index.js +774 -696
  46. package/index.mjs +774 -696
  47. package/index.test.d.ts +1 -0
  48. package/index.umd.js +775 -697
  49. package/insertGapsIntoRefSeq.test.d.ts +1 -0
  50. package/insertSequenceDataAtPosition.test.d.ts +1 -0
  51. package/insertSequenceDataAtPositionOrRange.test.d.ts +1 -0
  52. package/mapAnnotationsToRows.test.d.ts +1 -0
  53. package/package.json +3 -3
  54. package/prepareCircularViewData.test.d.ts +1 -0
  55. package/prepareRowData.test.d.ts +1 -0
  56. package/rotateBpsToPosition.test.d.ts +1 -0
  57. package/rotateSequenceDataToPosition.test.d.ts +1 -0
  58. package/tidyUpSequenceData.test.d.ts +1 -0
package/index.js CHANGED
@@ -394,18 +394,18 @@ lodash.exports;
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  }
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  __name(apply, "apply");
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  function arrayAggregator(array, setter, iteratee, accumulator) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- var value = array[index2];
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ var value = array[index];
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  setter(accumulator, value, iteratee(value), array);
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  }
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  return accumulator;
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  }
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  __name(arrayAggregator, "arrayAggregator");
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  function arrayEach(array, iteratee) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (iteratee(array[index2], index2, array) === false) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (iteratee(array[index], index, array) === false) {
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  break;
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  }
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  }
@@ -423,9 +423,9 @@ lodash.exports;
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  }
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  __name(arrayEachRight, "arrayEachRight");
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  function arrayEvery(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (!predicate(array[index2], index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (!predicate(array[index], index, array)) {
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  return false;
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  }
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  }
@@ -433,10 +433,10 @@ lodash.exports;
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  }
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  __name(arrayEvery, "arrayEvery");
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  function arrayFilter(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length, resIndex = 0, result = [];
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- while (++index2 < length) {
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- var value = array[index2];
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- if (predicate(value, index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length, resIndex = 0, result = [];
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+ while (++index < length) {
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+ var value = array[index];
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+ if (predicate(value, index, array)) {
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  result[resIndex++] = value;
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  }
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  }
@@ -449,9 +449,9 @@ lodash.exports;
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  }
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  __name(arrayIncludes, "arrayIncludes");
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  function arrayIncludesWith(array, value, comparator) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (comparator(value, array[index2])) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (comparator(value, array[index])) {
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  return true;
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  }
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  }
@@ -459,28 +459,28 @@ lodash.exports;
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  }
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  __name(arrayIncludesWith, "arrayIncludesWith");
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  function arrayMap(array, iteratee) {
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- var index2 = -1, length = array == null ? 0 : array.length, result = Array(length);
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- while (++index2 < length) {
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- result[index2] = iteratee(array[index2], index2, array);
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+ var index = -1, length = array == null ? 0 : array.length, result = Array(length);
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+ while (++index < length) {
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+ result[index] = iteratee(array[index], index, array);
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  }
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  return result;
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  }
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  __name(arrayMap, "arrayMap");
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  function arrayPush(array, values) {
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- var index2 = -1, length = values.length, offset = array.length;
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- while (++index2 < length) {
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- array[offset + index2] = values[index2];
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+ var index = -1, length = values.length, offset = array.length;
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+ while (++index < length) {
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+ array[offset + index] = values[index];
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  }
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  return array;
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  }
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  __name(arrayPush, "arrayPush");
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  function arrayReduce(array, iteratee, accumulator, initAccum) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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+ var index = -1, length = array == null ? 0 : array.length;
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  if (initAccum && length) {
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- accumulator = array[++index2];
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+ accumulator = array[++index];
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  }
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- while (++index2 < length) {
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- accumulator = iteratee(accumulator, array[index2], index2, array);
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+ while (++index < length) {
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+ accumulator = iteratee(accumulator, array[index], index, array);
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  }
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  return accumulator;
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  }
@@ -497,9 +497,9 @@ lodash.exports;
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  }
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  __name(arrayReduceRight, "arrayReduceRight");
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  function arraySome(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (predicate(array[index2], index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
502
+ if (predicate(array[index], index, array)) {
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  return true;
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  }
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  }
@@ -527,10 +527,10 @@ lodash.exports;
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  }
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  __name(baseFindKey, "baseFindKey");
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  function baseFindIndex(array, predicate, fromIndex, fromRight) {
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- var length = array.length, index2 = fromIndex + (fromRight ? 1 : -1);
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- while (fromRight ? index2-- : ++index2 < length) {
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- if (predicate(array[index2], index2, array)) {
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- return index2;
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+ var length = array.length, index = fromIndex + (fromRight ? 1 : -1);
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+ while (fromRight ? index-- : ++index < length) {
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+ if (predicate(array[index], index, array)) {
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+ return index;
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  }
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  }
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  return -1;
@@ -541,10 +541,10 @@ lodash.exports;
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  }
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  __name(baseIndexOf, "baseIndexOf");
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  function baseIndexOfWith(array, value, fromIndex, comparator) {
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- var index2 = fromIndex - 1, length = array.length;
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- while (++index2 < length) {
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- if (comparator(array[index2], value)) {
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- return index2;
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+ var index = fromIndex - 1, length = array.length;
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+ while (++index < length) {
546
+ if (comparator(array[index], value)) {
547
+ return index;
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  }
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  }
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  return -1;
@@ -572,8 +572,8 @@ lodash.exports;
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  }
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  __name(basePropertyOf, "basePropertyOf");
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  function baseReduce(collection, iteratee, accumulator, initAccum, eachFunc) {
575
- eachFunc(collection, function(value, index2, collection2) {
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- accumulator = initAccum ? (initAccum = false, value) : iteratee(accumulator, value, index2, collection2);
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+ eachFunc(collection, function(value, index, collection2) {
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+ accumulator = initAccum ? (initAccum = false, value) : iteratee(accumulator, value, index, collection2);
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  });
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  return accumulator;
579
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  }
@@ -588,9 +588,9 @@ lodash.exports;
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  }
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  __name(baseSortBy, "baseSortBy");
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  function baseSum(array, iteratee) {
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- var result, index2 = -1, length = array.length;
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- while (++index2 < length) {
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- var current = iteratee(array[index2]);
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+ var result, index = -1, length = array.length;
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+ while (++index < length) {
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+ var current = iteratee(array[index]);
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  if (current !== undefined$1) {
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  result = result === undefined$1 ? current : result + current;
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  }
@@ -599,9 +599,9 @@ lodash.exports;
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  }
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  __name(baseSum, "baseSum");
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  function baseTimes(n, iteratee) {
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- var index2 = -1, result = Array(n);
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- while (++index2 < n) {
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- result[index2] = iteratee(index2);
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+ var index = -1, result = Array(n);
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+ while (++index < n) {
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+ result[index] = iteratee(index);
605
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  }
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  return result;
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  }
@@ -633,17 +633,17 @@ lodash.exports;
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  }
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  __name(cacheHas, "cacheHas");
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  function charsStartIndex(strSymbols, chrSymbols) {
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- var index2 = -1, length = strSymbols.length;
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- while (++index2 < length && baseIndexOf(chrSymbols, strSymbols[index2], 0) > -1) {
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+ var index = -1, length = strSymbols.length;
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+ while (++index < length && baseIndexOf(chrSymbols, strSymbols[index], 0) > -1) {
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  }
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- return index2;
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+ return index;
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  }
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  __name(charsStartIndex, "charsStartIndex");
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  function charsEndIndex(strSymbols, chrSymbols) {
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- var index2 = strSymbols.length;
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- while (index2-- && baseIndexOf(chrSymbols, strSymbols[index2], 0) > -1) {
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+ var index = strSymbols.length;
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+ while (index-- && baseIndexOf(chrSymbols, strSymbols[index], 0) > -1) {
645
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  }
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- return index2;
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+ return index;
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  }
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  __name(charsEndIndex, "charsEndIndex");
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  function countHolders(array, placeholder) {
@@ -683,9 +683,9 @@ lodash.exports;
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  }
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  __name(iteratorToArray, "iteratorToArray");
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  function mapToArray(map) {
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- var index2 = -1, result = Array(map.size);
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+ var index = -1, result = Array(map.size);
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  map.forEach(function(value, key) {
688
- result[++index2] = [key, value];
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+ result[++index] = [key, value];
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  });
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  return result;
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  }
@@ -697,51 +697,51 @@ lodash.exports;
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  }
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  __name(overArg, "overArg");
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  function replaceHolders(array, placeholder) {
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- var index2 = -1, length = array.length, resIndex = 0, result = [];
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- while (++index2 < length) {
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- var value = array[index2];
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+ var index = -1, length = array.length, resIndex = 0, result = [];
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+ while (++index < length) {
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+ var value = array[index];
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  if (value === placeholder || value === PLACEHOLDER) {
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- array[index2] = PLACEHOLDER;
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- result[resIndex++] = index2;
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+ array[index] = PLACEHOLDER;
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+ result[resIndex++] = index;
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  }
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  }
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  return result;
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  }
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  __name(replaceHolders, "replaceHolders");
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  function setToArray(set) {
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- var index2 = -1, result = Array(set.size);
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+ var index = -1, result = Array(set.size);
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  set.forEach(function(value) {
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- result[++index2] = value;
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+ result[++index] = value;
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  });
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  return result;
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  }
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  __name(setToArray, "setToArray");
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  function setToPairs(set) {
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- var index2 = -1, result = Array(set.size);
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+ var index = -1, result = Array(set.size);
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  set.forEach(function(value) {
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- result[++index2] = [value, value];
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+ result[++index] = [value, value];
723
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  });
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  return result;
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  }
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  __name(setToPairs, "setToPairs");
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  function strictIndexOf(array, value, fromIndex) {
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- var index2 = fromIndex - 1, length = array.length;
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- while (++index2 < length) {
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- if (array[index2] === value) {
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- return index2;
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+ var index = fromIndex - 1, length = array.length;
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+ while (++index < length) {
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+ if (array[index] === value) {
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+ return index;
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  }
733
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  }
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  return -1;
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  }
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  __name(strictIndexOf, "strictIndexOf");
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  function strictLastIndexOf(array, value, fromIndex) {
738
- var index2 = fromIndex + 1;
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- while (index2--) {
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- if (array[index2] === value) {
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- return index2;
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+ var index = fromIndex + 1;
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+ while (index--) {
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+ if (array[index] === value) {
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+ return index;
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  }
743
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  }
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- return index2;
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+ return index;
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  }
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  __name(strictLastIndexOf, "strictLastIndexOf");
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  function stringSize(string) {
@@ -753,10 +753,10 @@ lodash.exports;
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  }
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  __name(stringToArray, "stringToArray");
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  function trimmedEndIndex(string) {
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- var index2 = string.length;
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- while (index2-- && reWhitespace.test(string.charAt(index2))) {
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+ var index = string.length;
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+ while (index-- && reWhitespace.test(string.charAt(index))) {
758
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  }
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- return index2;
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+ return index;
760
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  }
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  __name(trimmedEndIndex, "trimmedEndIndex");
762
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  var unescapeHtmlChar = basePropertyOf(htmlUnescapes);
@@ -933,15 +933,15 @@ lodash.exports;
933
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  }
934
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  __name(lazyReverse, "lazyReverse");
935
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  function lazyValue() {
936
- var array = this.__wrapped__.value(), dir = this.__dir__, isArr = isArray2(array), isRight = dir < 0, arrLength = isArr ? array.length : 0, view = getView(0, arrLength, this.__views__), start = view.start, end = view.end, length = end - start, index2 = isRight ? end : start - 1, iteratees = this.__iteratees__, iterLength = iteratees.length, resIndex = 0, takeCount = nativeMin(length, this.__takeCount__);
936
+ var array = this.__wrapped__.value(), dir = this.__dir__, isArr = isArray2(array), isRight = dir < 0, arrLength = isArr ? array.length : 0, view = getView(0, arrLength, this.__views__), start = view.start, end = view.end, length = end - start, index = isRight ? end : start - 1, iteratees = this.__iteratees__, iterLength = iteratees.length, resIndex = 0, takeCount = nativeMin(length, this.__takeCount__);
937
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  if (!isArr || !isRight && arrLength == length && takeCount == length) {
938
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  return baseWrapperValue(array, this.__actions__);
939
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  }
940
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  var result2 = [];
941
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  outer:
942
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  while (length-- && resIndex < takeCount) {
943
- index2 += dir;
944
- var iterIndex = -1, value = array[index2];
943
+ index += dir;
944
+ var iterIndex = -1, value = array[index];
945
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  while (++iterIndex < iterLength) {
946
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  var data = iteratees[iterIndex], iteratee2 = data.iteratee, type = data.type, computed = iteratee2(value);
947
947
  if (type == LAZY_MAP_FLAG) {
@@ -962,10 +962,10 @@ lodash.exports;
962
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  LazyWrapper.prototype = baseCreate(baseLodash.prototype);
963
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  LazyWrapper.prototype.constructor = LazyWrapper;
964
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  function Hash(entries) {
965
- var index2 = -1, length = entries == null ? 0 : entries.length;
965
+ var index = -1, length = entries == null ? 0 : entries.length;
966
966
  this.clear();
967
- while (++index2 < length) {
968
- var entry = entries[index2];
967
+ while (++index < length) {
968
+ var entry = entries[index];
969
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  this.set(entry[0], entry[1]);
970
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  }
971
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  }
@@ -1008,10 +1008,10 @@ lodash.exports;
1008
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  Hash.prototype.has = hashHas;
1009
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  Hash.prototype.set = hashSet;
1010
1010
  function ListCache(entries) {
1011
- var index2 = -1, length = entries == null ? 0 : entries.length;
1011
+ var index = -1, length = entries == null ? 0 : entries.length;
1012
1012
  this.clear();
1013
- while (++index2 < length) {
1014
- var entry = entries[index2];
1013
+ while (++index < length) {
1014
+ var entry = entries[index];
1015
1015
  this.set(entry[0], entry[1]);
1016
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  }
1017
1017
  }
@@ -1022,23 +1022,23 @@ lodash.exports;
1022
1022
  }
1023
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  __name(listCacheClear, "listCacheClear");
1024
1024
  function listCacheDelete(key) {
1025
- var data = this.__data__, index2 = assocIndexOf(data, key);
1026
- if (index2 < 0) {
1025
+ var data = this.__data__, index = assocIndexOf(data, key);
1026
+ if (index < 0) {
1027
1027
  return false;
1028
1028
  }
1029
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  var lastIndex = data.length - 1;
1030
- if (index2 == lastIndex) {
1030
+ if (index == lastIndex) {
1031
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  data.pop();
1032
1032
  } else {
1033
- splice.call(data, index2, 1);
1033
+ splice.call(data, index, 1);
1034
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  }
1035
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  --this.size;
1036
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  return true;
1037
1037
  }
1038
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  __name(listCacheDelete, "listCacheDelete");
1039
1039
  function listCacheGet(key) {
1040
- var data = this.__data__, index2 = assocIndexOf(data, key);
1041
- return index2 < 0 ? undefined$1 : data[index2][1];
1040
+ var data = this.__data__, index = assocIndexOf(data, key);
1041
+ return index < 0 ? undefined$1 : data[index][1];
1042
1042
  }
1043
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  __name(listCacheGet, "listCacheGet");
1044
1044
  function listCacheHas(key) {
@@ -1046,12 +1046,12 @@ lodash.exports;
1046
1046
  }
1047
1047
  __name(listCacheHas, "listCacheHas");
1048
1048
  function listCacheSet(key, value) {
1049
- var data = this.__data__, index2 = assocIndexOf(data, key);
1050
- if (index2 < 0) {
1049
+ var data = this.__data__, index = assocIndexOf(data, key);
1050
+ if (index < 0) {
1051
1051
  ++this.size;
1052
1052
  data.push([key, value]);
1053
1053
  } else {
1054
- data[index2][1] = value;
1054
+ data[index][1] = value;
1055
1055
  }
1056
1056
  return this;
1057
1057
  }
@@ -1062,10 +1062,10 @@ lodash.exports;
1062
1062
  ListCache.prototype.has = listCacheHas;
1063
1063
  ListCache.prototype.set = listCacheSet;
1064
1064
  function MapCache(entries) {
1065
- var index2 = -1, length = entries == null ? 0 : entries.length;
1065
+ var index = -1, length = entries == null ? 0 : entries.length;
1066
1066
  this.clear();
1067
- while (++index2 < length) {
1068
- var entry = entries[index2];
1067
+ while (++index < length) {
1068
+ var entry = entries[index];
1069
1069
  this.set(entry[0], entry[1]);
1070
1070
  }
1071
1071
  }
@@ -1106,10 +1106,10 @@ lodash.exports;
1106
1106
  MapCache.prototype.has = mapCacheHas;
1107
1107
  MapCache.prototype.set = mapCacheSet;
1108
1108
  function SetCache(values2) {
1109
- var index2 = -1, length = values2 == null ? 0 : values2.length;
1109
+ var index = -1, length = values2 == null ? 0 : values2.length;
1110
1110
  this.__data__ = new MapCache();
1111
- while (++index2 < length) {
1112
- this.add(values2[index2]);
1111
+ while (++index < length) {
1112
+ this.add(values2[index]);
1113
1113
  }
1114
1114
  }
1115
1115
  __name(SetCache, "SetCache");
@@ -1170,7 +1170,7 @@ lodash.exports;
1170
1170
  Stack.prototype.has = stackHas;
1171
1171
  Stack.prototype.set = stackSet;
1172
1172
  function arrayLikeKeys(value, inherited) {
1173
- var isArr = isArray2(value), isArg = !isArr && isArguments(value), isBuff = !isArr && !isArg && isBuffer2(value), isType = !isArr && !isArg && !isBuff && isTypedArray(value), skipIndexes = isArr || isArg || isBuff || isType, result2 = skipIndexes ? baseTimes(value.length, String2) : [], length = result2.length;
1173
+ var isArr = isArray2(value), isArg = !isArr && isArguments(value), isBuff = !isArr && !isArg && isBuffer(value), isType = !isArr && !isArg && !isBuff && isTypedArray(value), skipIndexes = isArr || isArg || isBuff || isType, result2 = skipIndexes ? baseTimes(value.length, String2) : [], length = result2.length;
1174
1174
  for (var key in value) {
1175
1175
  if ((inherited || hasOwnProperty.call(value, key)) && !(skipIndexes && // Safari 9 has enumerable `arguments.length` in strict mode.
1176
1176
  (key == "length" || // Node.js 0.10 has enumerable non-index properties on buffers.
@@ -1248,9 +1248,9 @@ lodash.exports;
1248
1248
  }
1249
1249
  __name(baseAssignValue, "baseAssignValue");
1250
1250
  function baseAt(object, paths) {
1251
- var index2 = -1, length = paths.length, result2 = Array2(length), skip = object == null;
1252
- while (++index2 < length) {
1253
- result2[index2] = skip ? undefined$1 : get4(object, paths[index2]);
1251
+ var index = -1, length = paths.length, result2 = Array2(length), skip = object == null;
1252
+ while (++index < length) {
1253
+ result2[index] = skip ? undefined$1 : get4(object, paths[index]);
1254
1254
  }
1255
1255
  return result2;
1256
1256
  }
@@ -1286,7 +1286,7 @@ lodash.exports;
1286
1286
  }
1287
1287
  } else {
1288
1288
  var tag = getTag(value), isFunc = tag == funcTag || tag == genTag;
1289
- if (isBuffer2(value)) {
1289
+ if (isBuffer(value)) {
1290
1290
  return cloneBuffer(value, isDeep);
1291
1291
  }
1292
1292
  if (tag == objectTag || tag == argsTag || isFunc && !object) {
@@ -1360,7 +1360,7 @@ lodash.exports;
1360
1360
  }
1361
1361
  __name(baseDelay, "baseDelay");
1362
1362
  function baseDifference(array, values2, iteratee2, comparator) {
1363
- var index2 = -1, includes2 = arrayIncludes, isCommon = true, length = array.length, result2 = [], valuesLength = values2.length;
1363
+ var index = -1, includes2 = arrayIncludes, isCommon = true, length = array.length, result2 = [], valuesLength = values2.length;
1364
1364
  if (!length) {
1365
1365
  return result2;
1366
1366
  }
@@ -1376,8 +1376,8 @@ lodash.exports;
1376
1376
  values2 = new SetCache(values2);
1377
1377
  }
1378
1378
  outer:
1379
- while (++index2 < length) {
1380
- var value = array[index2], computed = iteratee2 == null ? value : iteratee2(value);
1379
+ while (++index < length) {
1380
+ var value = array[index], computed = iteratee2 == null ? value : iteratee2(value);
1381
1381
  value = comparator || value !== 0 ? value : 0;
1382
1382
  if (isCommon && computed === computed) {
1383
1383
  var valuesIndex = valuesLength;
@@ -1398,17 +1398,17 @@ lodash.exports;
1398
1398
  var baseEachRight = createBaseEach(baseForOwnRight, true);
1399
1399
  function baseEvery(collection, predicate) {
1400
1400
  var result2 = true;
1401
- baseEach(collection, function(value, index2, collection2) {
1402
- result2 = !!predicate(value, index2, collection2);
1401
+ baseEach(collection, function(value, index, collection2) {
1402
+ result2 = !!predicate(value, index, collection2);
1403
1403
  return result2;
1404
1404
  });
1405
1405
  return result2;
1406
1406
  }
1407
1407
  __name(baseEvery, "baseEvery");
1408
1408
  function baseExtremum(array, iteratee2, comparator) {
1409
- var index2 = -1, length = array.length;
1410
- while (++index2 < length) {
1411
- var value = array[index2], current = iteratee2(value);
1409
+ var index = -1, length = array.length;
1410
+ while (++index < length) {
1411
+ var value = array[index], current = iteratee2(value);
1412
1412
  if (current != null && (computed === undefined$1 ? current === current && !isSymbol(current) : comparator(current, computed))) {
1413
1413
  var computed = current, result2 = value;
1414
1414
  }
@@ -1435,8 +1435,8 @@ lodash.exports;
1435
1435
  __name(baseFill, "baseFill");
1436
1436
  function baseFilter(collection, predicate) {
1437
1437
  var result2 = [];
1438
- baseEach(collection, function(value, index2, collection2) {
1439
- if (predicate(value, index2, collection2)) {
1438
+ baseEach(collection, function(value, index, collection2) {
1439
+ if (predicate(value, index, collection2)) {
1440
1440
  result2.push(value);
1441
1441
  }
1442
1442
  });
@@ -1444,11 +1444,11 @@ lodash.exports;
1444
1444
  }
1445
1445
  __name(baseFilter, "baseFilter");
1446
1446
  function baseFlatten(array, depth, predicate, isStrict, result2) {
1447
- var index2 = -1, length = array.length;
1447
+ var index = -1, length = array.length;
1448
1448
  predicate || (predicate = isFlattenable);
1449
1449
  result2 || (result2 = []);
1450
- while (++index2 < length) {
1451
- var value = array[index2];
1450
+ while (++index < length) {
1451
+ var value = array[index];
1452
1452
  if (depth > 0 && predicate(value)) {
1453
1453
  if (depth > 1) {
1454
1454
  baseFlatten(value, depth - 1, predicate, isStrict, result2);
@@ -1480,11 +1480,11 @@ lodash.exports;
1480
1480
  __name(baseFunctions, "baseFunctions");
1481
1481
  function baseGet(object, path) {
1482
1482
  path = castPath(path, object);
1483
- var index2 = 0, length = path.length;
1484
- while (object != null && index2 < length) {
1485
- object = object[toKey(path[index2++])];
1483
+ var index = 0, length = path.length;
1484
+ while (object != null && index < length) {
1485
+ object = object[toKey(path[index++])];
1486
1486
  }
1487
- return index2 && index2 == length ? object : undefined$1;
1487
+ return index && index == length ? object : undefined$1;
1488
1488
  }
1489
1489
  __name(baseGet, "baseGet");
1490
1490
  function baseGetAllKeys(object, keysFunc, symbolsFunc) {
@@ -1526,10 +1526,10 @@ lodash.exports;
1526
1526
  caches[othIndex] = !comparator && (iteratee2 || length >= 120 && array.length >= 120) ? new SetCache(othIndex && array) : undefined$1;
1527
1527
  }
1528
1528
  array = arrays[0];
1529
- var index2 = -1, seen = caches[0];
1529
+ var index = -1, seen = caches[0];
1530
1530
  outer:
1531
- while (++index2 < length && result2.length < maxLength) {
1532
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
1531
+ while (++index < length && result2.length < maxLength) {
1532
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
1533
1533
  value = comparator || value !== 0 ? value : 0;
1534
1534
  if (!(seen ? cacheHas(seen, computed) : includes2(result2, computed, comparator))) {
1535
1535
  othIndex = othLength;
@@ -1589,8 +1589,8 @@ lodash.exports;
1589
1589
  objTag = objTag == argsTag ? objectTag : objTag;
1590
1590
  othTag = othTag == argsTag ? objectTag : othTag;
1591
1591
  var objIsObj = objTag == objectTag, othIsObj = othTag == objectTag, isSameTag = objTag == othTag;
1592
- if (isSameTag && isBuffer2(object)) {
1593
- if (!isBuffer2(other)) {
1592
+ if (isSameTag && isBuffer(object)) {
1593
+ if (!isBuffer(other)) {
1594
1594
  return false;
1595
1595
  }
1596
1596
  objIsArr = true;
@@ -1620,19 +1620,19 @@ lodash.exports;
1620
1620
  }
1621
1621
  __name(baseIsMap, "baseIsMap");
1622
1622
  function baseIsMatch(object, source2, matchData, customizer) {
1623
- var index2 = matchData.length, length = index2, noCustomizer = !customizer;
1623
+ var index = matchData.length, length = index, noCustomizer = !customizer;
1624
1624
  if (object == null) {
1625
1625
  return !length;
1626
1626
  }
1627
1627
  object = Object2(object);
1628
- while (index2--) {
1629
- var data = matchData[index2];
1628
+ while (index--) {
1629
+ var data = matchData[index];
1630
1630
  if (noCustomizer && data[2] ? data[1] !== object[data[0]] : !(data[0] in object)) {
1631
1631
  return false;
1632
1632
  }
1633
1633
  }
1634
- while (++index2 < length) {
1635
- data = matchData[index2];
1634
+ while (++index < length) {
1635
+ data = matchData[index];
1636
1636
  var key = data[0], objValue = object[key], srcValue = data[1];
1637
1637
  if (noCustomizer && data[2]) {
1638
1638
  if (objValue === undefined$1 && !(key in object)) {
@@ -1715,9 +1715,9 @@ lodash.exports;
1715
1715
  }
1716
1716
  __name(baseLt, "baseLt");
1717
1717
  function baseMap(collection, iteratee2) {
1718
- var index2 = -1, result2 = isArrayLike(collection) ? Array2(collection.length) : [];
1718
+ var index = -1, result2 = isArrayLike(collection) ? Array2(collection.length) : [];
1719
1719
  baseEach(collection, function(value, key, collection2) {
1720
- result2[++index2] = iteratee2(value, key, collection2);
1720
+ result2[++index] = iteratee2(value, key, collection2);
1721
1721
  });
1722
1722
  return result2;
1723
1723
  }
@@ -1769,7 +1769,7 @@ lodash.exports;
1769
1769
  var newValue = customizer ? customizer(objValue, srcValue, key + "", object, source2, stack) : undefined$1;
1770
1770
  var isCommon = newValue === undefined$1;
1771
1771
  if (isCommon) {
1772
- var isArr = isArray2(srcValue), isBuff = !isArr && isBuffer2(srcValue), isTyped = !isArr && !isBuff && isTypedArray(srcValue);
1772
+ var isArr = isArray2(srcValue), isBuff = !isArr && isBuffer(srcValue), isTyped = !isArr && !isBuff && isTypedArray(srcValue);
1773
1773
  newValue = srcValue;
1774
1774
  if (isArr || isBuff || isTyped) {
1775
1775
  if (isArray2(objValue)) {
@@ -1826,13 +1826,13 @@ lodash.exports;
1826
1826
  } else {
1827
1827
  iteratees = [identity];
1828
1828
  }
1829
- var index2 = -1;
1829
+ var index = -1;
1830
1830
  iteratees = arrayMap(iteratees, baseUnary(getIteratee()));
1831
1831
  var result2 = baseMap(collection, function(value, key, collection2) {
1832
1832
  var criteria = arrayMap(iteratees, function(iteratee2) {
1833
1833
  return iteratee2(value);
1834
1834
  });
1835
- return { "criteria": criteria, "index": ++index2, "value": value };
1835
+ return { "criteria": criteria, "index": ++index, "value": value };
1836
1836
  });
1837
1837
  return baseSortBy(result2, function(object, other) {
1838
1838
  return compareMultiple(object, other, orders);
@@ -1846,9 +1846,9 @@ lodash.exports;
1846
1846
  }
1847
1847
  __name(basePick, "basePick");
1848
1848
  function basePickBy(object, paths, predicate) {
1849
- var index2 = -1, length = paths.length, result2 = {};
1850
- while (++index2 < length) {
1851
- var path = paths[index2], value = baseGet(object, path);
1849
+ var index = -1, length = paths.length, result2 = {};
1850
+ while (++index < length) {
1851
+ var path = paths[index], value = baseGet(object, path);
1852
1852
  if (predicate(value, path)) {
1853
1853
  baseSet(result2, castPath(path, object), value);
1854
1854
  }
@@ -1863,15 +1863,15 @@ lodash.exports;
1863
1863
  }
1864
1864
  __name(basePropertyDeep, "basePropertyDeep");
1865
1865
  function basePullAll(array, values2, iteratee2, comparator) {
1866
- var indexOf2 = comparator ? baseIndexOfWith : baseIndexOf, index2 = -1, length = values2.length, seen = array;
1866
+ var indexOf2 = comparator ? baseIndexOfWith : baseIndexOf, index = -1, length = values2.length, seen = array;
1867
1867
  if (array === values2) {
1868
1868
  values2 = copyArray(values2);
1869
1869
  }
1870
1870
  if (iteratee2) {
1871
1871
  seen = arrayMap(array, baseUnary(iteratee2));
1872
1872
  }
1873
- while (++index2 < length) {
1874
- var fromIndex = 0, value = values2[index2], computed = iteratee2 ? iteratee2(value) : value;
1873
+ while (++index < length) {
1874
+ var fromIndex = 0, value = values2[index], computed = iteratee2 ? iteratee2(value) : value;
1875
1875
  while ((fromIndex = indexOf2(seen, computed, fromIndex, comparator)) > -1) {
1876
1876
  if (seen !== array) {
1877
1877
  splice.call(seen, fromIndex, 1);
@@ -1885,13 +1885,13 @@ lodash.exports;
1885
1885
  function basePullAt(array, indexes) {
1886
1886
  var length = array ? indexes.length : 0, lastIndex = length - 1;
1887
1887
  while (length--) {
1888
- var index2 = indexes[length];
1889
- if (length == lastIndex || index2 !== previous) {
1890
- var previous = index2;
1891
- if (isIndex(index2)) {
1892
- splice.call(array, index2, 1);
1888
+ var index = indexes[length];
1889
+ if (length == lastIndex || index !== previous) {
1890
+ var previous = index;
1891
+ if (isIndex(index)) {
1892
+ splice.call(array, index, 1);
1893
1893
  } else {
1894
- baseUnset(array, index2);
1894
+ baseUnset(array, index);
1895
1895
  }
1896
1896
  }
1897
1897
  }
@@ -1903,9 +1903,9 @@ lodash.exports;
1903
1903
  }
1904
1904
  __name(baseRandom, "baseRandom");
1905
1905
  function baseRange(start, end, step, fromRight) {
1906
- var index2 = -1, length = nativeMax(nativeCeil((end - start) / (step || 1)), 0), result2 = Array2(length);
1906
+ var index = -1, length = nativeMax(nativeCeil((end - start) / (step || 1)), 0), result2 = Array2(length);
1907
1907
  while (length--) {
1908
- result2[fromRight ? length : ++index2] = start;
1908
+ result2[fromRight ? length : ++index] = start;
1909
1909
  start += step;
1910
1910
  }
1911
1911
  return result2;
@@ -1946,17 +1946,17 @@ lodash.exports;
1946
1946
  return object;
1947
1947
  }
1948
1948
  path = castPath(path, object);
1949
- var index2 = -1, length = path.length, lastIndex = length - 1, nested = object;
1950
- while (nested != null && ++index2 < length) {
1951
- var key = toKey(path[index2]), newValue = value;
1949
+ var index = -1, length = path.length, lastIndex = length - 1, nested = object;
1950
+ while (nested != null && ++index < length) {
1951
+ var key = toKey(path[index]), newValue = value;
1952
1952
  if (key === "__proto__" || key === "constructor" || key === "prototype") {
1953
1953
  return object;
1954
1954
  }
1955
- if (index2 != lastIndex) {
1955
+ if (index != lastIndex) {
1956
1956
  var objValue = nested[key];
1957
1957
  newValue = customizer ? customizer(objValue, key, nested) : undefined$1;
1958
1958
  if (newValue === undefined$1) {
1959
- newValue = isObject(objValue) ? objValue : isIndex(path[index2 + 1]) ? [] : {};
1959
+ newValue = isObject(objValue) ? objValue : isIndex(path[index + 1]) ? [] : {};
1960
1960
  }
1961
1961
  }
1962
1962
  assignValue(nested, key, newValue);
@@ -1982,7 +1982,7 @@ lodash.exports;
1982
1982
  }
1983
1983
  __name(baseShuffle, "baseShuffle");
1984
1984
  function baseSlice(array, start, end) {
1985
- var index2 = -1, length = array.length;
1985
+ var index = -1, length = array.length;
1986
1986
  if (start < 0) {
1987
1987
  start = -start > length ? 0 : length + start;
1988
1988
  }
@@ -1993,16 +1993,16 @@ lodash.exports;
1993
1993
  length = start > end ? 0 : end - start >>> 0;
1994
1994
  start >>>= 0;
1995
1995
  var result2 = Array2(length);
1996
- while (++index2 < length) {
1997
- result2[index2] = array[index2 + start];
1996
+ while (++index < length) {
1997
+ result2[index] = array[index + start];
1998
1998
  }
1999
1999
  return result2;
2000
2000
  }
2001
2001
  __name(baseSlice, "baseSlice");
2002
2002
  function baseSome(collection, predicate) {
2003
2003
  var result2;
2004
- baseEach(collection, function(value, index2, collection2) {
2005
- result2 = predicate(value, index2, collection2);
2004
+ baseEach(collection, function(value, index, collection2) {
2005
+ result2 = predicate(value, index, collection2);
2006
2006
  return !result2;
2007
2007
  });
2008
2008
  return !!result2;
@@ -2056,10 +2056,10 @@ lodash.exports;
2056
2056
  }
2057
2057
  __name(baseSortedIndexBy, "baseSortedIndexBy");
2058
2058
  function baseSortedUniq(array, iteratee2) {
2059
- var index2 = -1, length = array.length, resIndex = 0, result2 = [];
2060
- while (++index2 < length) {
2061
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
2062
- if (!index2 || !eq(computed, seen)) {
2059
+ var index = -1, length = array.length, resIndex = 0, result2 = [];
2060
+ while (++index < length) {
2061
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
2062
+ if (!index || !eq(computed, seen)) {
2063
2063
  var seen = computed;
2064
2064
  result2[resIndex++] = value === 0 ? 0 : value;
2065
2065
  }
@@ -2092,7 +2092,7 @@ lodash.exports;
2092
2092
  }
2093
2093
  __name(baseToString, "baseToString");
2094
2094
  function baseUniq(array, iteratee2, comparator) {
2095
- var index2 = -1, includes2 = arrayIncludes, length = array.length, isCommon = true, result2 = [], seen = result2;
2095
+ var index = -1, includes2 = arrayIncludes, length = array.length, isCommon = true, result2 = [], seen = result2;
2096
2096
  if (comparator) {
2097
2097
  isCommon = false;
2098
2098
  includes2 = arrayIncludesWith;
@@ -2108,8 +2108,8 @@ lodash.exports;
2108
2108
  seen = iteratee2 ? [] : result2;
2109
2109
  }
2110
2110
  outer:
2111
- while (++index2 < length) {
2112
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
2111
+ while (++index < length) {
2112
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
2113
2113
  value = comparator || value !== 0 ? value : 0;
2114
2114
  if (isCommon && computed === computed) {
2115
2115
  var seenIndex = seen.length;
@@ -2143,10 +2143,10 @@ lodash.exports;
2143
2143
  }
2144
2144
  __name(baseUpdate, "baseUpdate");
2145
2145
  function baseWhile(array, predicate, isDrop, fromRight) {
2146
- var length = array.length, index2 = fromRight ? length : -1;
2147
- while ((fromRight ? index2-- : ++index2 < length) && predicate(array[index2], index2, array)) {
2146
+ var length = array.length, index = fromRight ? length : -1;
2147
+ while ((fromRight ? index-- : ++index < length) && predicate(array[index], index, array)) {
2148
2148
  }
2149
- return isDrop ? baseSlice(array, fromRight ? 0 : index2, fromRight ? index2 + 1 : length) : baseSlice(array, fromRight ? index2 + 1 : 0, fromRight ? length : index2);
2149
+ return isDrop ? baseSlice(array, fromRight ? 0 : index, fromRight ? index + 1 : length) : baseSlice(array, fromRight ? index + 1 : 0, fromRight ? length : index);
2150
2150
  }
2151
2151
  __name(baseWhile, "baseWhile");
2152
2152
  function baseWrapperValue(value, actions) {
@@ -2164,12 +2164,12 @@ lodash.exports;
2164
2164
  if (length < 2) {
2165
2165
  return length ? baseUniq(arrays[0]) : [];
2166
2166
  }
2167
- var index2 = -1, result2 = Array2(length);
2168
- while (++index2 < length) {
2169
- var array = arrays[index2], othIndex = -1;
2167
+ var index = -1, result2 = Array2(length);
2168
+ while (++index < length) {
2169
+ var array = arrays[index], othIndex = -1;
2170
2170
  while (++othIndex < length) {
2171
- if (othIndex != index2) {
2172
- result2[index2] = baseDifference(result2[index2] || array, arrays[othIndex], iteratee2, comparator);
2171
+ if (othIndex != index) {
2172
+ result2[index] = baseDifference(result2[index] || array, arrays[othIndex], iteratee2, comparator);
2173
2173
  }
2174
2174
  }
2175
2175
  }
@@ -2177,10 +2177,10 @@ lodash.exports;
2177
2177
  }
2178
2178
  __name(baseXor, "baseXor");
2179
2179
  function baseZipObject(props, values2, assignFunc) {
2180
- var index2 = -1, length = props.length, valsLength = values2.length, result2 = {};
2181
- while (++index2 < length) {
2182
- var value = index2 < valsLength ? values2[index2] : undefined$1;
2183
- assignFunc(result2, props[index2], value);
2180
+ var index = -1, length = props.length, valsLength = values2.length, result2 = {};
2181
+ while (++index < length) {
2182
+ var value = index < valsLength ? values2[index] : undefined$1;
2183
+ assignFunc(result2, props[index], value);
2184
2184
  }
2185
2185
  return result2;
2186
2186
  }
@@ -2210,12 +2210,12 @@ lodash.exports;
2210
2210
  var clearTimeout = ctxClearTimeout || function(id) {
2211
2211
  return root.clearTimeout(id);
2212
2212
  };
2213
- function cloneBuffer(buffer2, isDeep) {
2213
+ function cloneBuffer(buffer, isDeep) {
2214
2214
  if (isDeep) {
2215
- return buffer2.slice();
2215
+ return buffer.slice();
2216
2216
  }
2217
- var length = buffer2.length, result2 = allocUnsafe ? allocUnsafe(length) : new buffer2.constructor(length);
2218
- buffer2.copy(result2);
2217
+ var length = buffer.length, result2 = allocUnsafe ? allocUnsafe(length) : new buffer.constructor(length);
2218
+ buffer.copy(result2);
2219
2219
  return result2;
2220
2220
  }
2221
2221
  __name(cloneBuffer, "cloneBuffer");
@@ -2226,8 +2226,8 @@ lodash.exports;
2226
2226
  }
2227
2227
  __name(cloneArrayBuffer, "cloneArrayBuffer");
2228
2228
  function cloneDataView(dataView, isDeep) {
2229
- var buffer2 = isDeep ? cloneArrayBuffer(dataView.buffer) : dataView.buffer;
2230
- return new dataView.constructor(buffer2, dataView.byteOffset, dataView.byteLength);
2229
+ var buffer = isDeep ? cloneArrayBuffer(dataView.buffer) : dataView.buffer;
2230
+ return new dataView.constructor(buffer, dataView.byteOffset, dataView.byteLength);
2231
2231
  }
2232
2232
  __name(cloneDataView, "cloneDataView");
2233
2233
  function cloneRegExp2(regexp) {
@@ -2241,8 +2241,8 @@ lodash.exports;
2241
2241
  }
2242
2242
  __name(cloneSymbol, "cloneSymbol");
2243
2243
  function cloneTypedArray(typedArray, isDeep) {
2244
- var buffer2 = isDeep ? cloneArrayBuffer(typedArray.buffer) : typedArray.buffer;
2245
- return new typedArray.constructor(buffer2, typedArray.byteOffset, typedArray.length);
2244
+ var buffer = isDeep ? cloneArrayBuffer(typedArray.buffer) : typedArray.buffer;
2245
+ return new typedArray.constructor(buffer, typedArray.byteOffset, typedArray.length);
2246
2246
  }
2247
2247
  __name(cloneTypedArray, "cloneTypedArray");
2248
2248
  function compareAscending(value, other) {
@@ -2260,14 +2260,14 @@ lodash.exports;
2260
2260
  }
2261
2261
  __name(compareAscending, "compareAscending");
2262
2262
  function compareMultiple(object, other, orders) {
2263
- var index2 = -1, objCriteria = object.criteria, othCriteria = other.criteria, length = objCriteria.length, ordersLength = orders.length;
2264
- while (++index2 < length) {
2265
- var result2 = compareAscending(objCriteria[index2], othCriteria[index2]);
2263
+ var index = -1, objCriteria = object.criteria, othCriteria = other.criteria, length = objCriteria.length, ordersLength = orders.length;
2264
+ while (++index < length) {
2265
+ var result2 = compareAscending(objCriteria[index], othCriteria[index]);
2266
2266
  if (result2) {
2267
- if (index2 >= ordersLength) {
2267
+ if (index >= ordersLength) {
2268
2268
  return result2;
2269
2269
  }
2270
- var order = orders[index2];
2270
+ var order = orders[index];
2271
2271
  return result2 * (order == "desc" ? -1 : 1);
2272
2272
  }
2273
2273
  }
@@ -2308,10 +2308,10 @@ lodash.exports;
2308
2308
  }
2309
2309
  __name(composeArgsRight, "composeArgsRight");
2310
2310
  function copyArray(source2, array) {
2311
- var index2 = -1, length = source2.length;
2311
+ var index = -1, length = source2.length;
2312
2312
  array || (array = Array2(length));
2313
- while (++index2 < length) {
2314
- array[index2] = source2[index2];
2313
+ while (++index < length) {
2314
+ array[index] = source2[index];
2315
2315
  }
2316
2316
  return array;
2317
2317
  }
@@ -2319,9 +2319,9 @@ lodash.exports;
2319
2319
  function copyObject(source2, props, object, customizer) {
2320
2320
  var isNew = !object;
2321
2321
  object || (object = {});
2322
- var index2 = -1, length = props.length;
2323
- while (++index2 < length) {
2324
- var key = props[index2];
2322
+ var index = -1, length = props.length;
2323
+ while (++index < length) {
2324
+ var key = props[index];
2325
2325
  var newValue = customizer ? customizer(object[key], source2[key], key, object, source2) : undefined$1;
2326
2326
  if (newValue === undefined$1) {
2327
2327
  newValue = source2[key];
@@ -2352,17 +2352,17 @@ lodash.exports;
2352
2352
  __name(createAggregator, "createAggregator");
2353
2353
  function createAssigner(assigner) {
2354
2354
  return baseRest(function(object, sources) {
2355
- var index2 = -1, length = sources.length, customizer = length > 1 ? sources[length - 1] : undefined$1, guard = length > 2 ? sources[2] : undefined$1;
2355
+ var index = -1, length = sources.length, customizer = length > 1 ? sources[length - 1] : undefined$1, guard = length > 2 ? sources[2] : undefined$1;
2356
2356
  customizer = assigner.length > 3 && typeof customizer == "function" ? (length--, customizer) : undefined$1;
2357
2357
  if (guard && isIterateeCall(sources[0], sources[1], guard)) {
2358
2358
  customizer = length < 3 ? undefined$1 : customizer;
2359
2359
  length = 1;
2360
2360
  }
2361
2361
  object = Object2(object);
2362
- while (++index2 < length) {
2363
- var source2 = sources[index2];
2362
+ while (++index < length) {
2363
+ var source2 = sources[index];
2364
2364
  if (source2) {
2365
- assigner(object, source2, index2, customizer);
2365
+ assigner(object, source2, index, customizer);
2366
2366
  }
2367
2367
  }
2368
2368
  return object;
@@ -2377,9 +2377,9 @@ lodash.exports;
2377
2377
  if (!isArrayLike(collection)) {
2378
2378
  return eachFunc(collection, iteratee2);
2379
2379
  }
2380
- var length = collection.length, index2 = fromRight ? length : -1, iterable = Object2(collection);
2381
- while (fromRight ? index2-- : ++index2 < length) {
2382
- if (iteratee2(iterable[index2], index2, iterable) === false) {
2380
+ var length = collection.length, index = fromRight ? length : -1, iterable = Object2(collection);
2381
+ while (fromRight ? index-- : ++index < length) {
2382
+ if (iteratee2(iterable[index], index, iterable) === false) {
2383
2383
  break;
2384
2384
  }
2385
2385
  }
@@ -2389,9 +2389,9 @@ lodash.exports;
2389
2389
  __name(createBaseEach, "createBaseEach");
2390
2390
  function createBaseFor(fromRight) {
2391
2391
  return function(object, iteratee2, keysFunc) {
2392
- var index2 = -1, iterable = Object2(object), props = keysFunc(object), length = props.length;
2392
+ var index = -1, iterable = Object2(object), props = keysFunc(object), length = props.length;
2393
2393
  while (length--) {
2394
- var key = props[fromRight ? length : ++index2];
2394
+ var key = props[fromRight ? length : ++index];
2395
2395
  if (iteratee2(iterable[key], key, iterable) === false) {
2396
2396
  break;
2397
2397
  }
@@ -2455,9 +2455,9 @@ lodash.exports;
2455
2455
  function createCurry(func, bitmask, arity) {
2456
2456
  var Ctor = createCtor(func);
2457
2457
  function wrapper() {
2458
- var length = arguments.length, args = Array2(length), index2 = length, placeholder = getHolder(wrapper);
2459
- while (index2--) {
2460
- args[index2] = arguments[index2];
2458
+ var length = arguments.length, args = Array2(length), index = length, placeholder = getHolder(wrapper);
2459
+ while (index--) {
2460
+ args[index] = arguments[index];
2461
2461
  }
2462
2462
  var holders = length < 3 && args[0] !== placeholder && args[length - 1] !== placeholder ? [] : replaceHolders(args, placeholder);
2463
2463
  length -= holders.length;
@@ -2492,19 +2492,19 @@ lodash.exports;
2492
2492
  return iteratee2(iterable[key], key, iterable);
2493
2493
  }, "predicate");
2494
2494
  }
2495
- var index2 = findIndexFunc(collection, predicate, fromIndex);
2496
- return index2 > -1 ? iterable[iteratee2 ? collection[index2] : index2] : undefined$1;
2495
+ var index = findIndexFunc(collection, predicate, fromIndex);
2496
+ return index > -1 ? iterable[iteratee2 ? collection[index] : index] : undefined$1;
2497
2497
  };
2498
2498
  }
2499
2499
  __name(createFind, "createFind");
2500
2500
  function createFlow(fromRight) {
2501
2501
  return flatRest(function(funcs) {
2502
- var length = funcs.length, index2 = length, prereq = LodashWrapper.prototype.thru;
2502
+ var length = funcs.length, index = length, prereq = LodashWrapper.prototype.thru;
2503
2503
  if (fromRight) {
2504
2504
  funcs.reverse();
2505
2505
  }
2506
- while (index2--) {
2507
- var func = funcs[index2];
2506
+ while (index--) {
2507
+ var func = funcs[index];
2508
2508
  if (typeof func != "function") {
2509
2509
  throw new TypeError2(FUNC_ERROR_TEXT);
2510
2510
  }
@@ -2512,9 +2512,9 @@ lodash.exports;
2512
2512
  var wrapper = new LodashWrapper([], true);
2513
2513
  }
2514
2514
  }
2515
- index2 = wrapper ? index2 : length;
2516
- while (++index2 < length) {
2517
- func = funcs[index2];
2515
+ index = wrapper ? index : length;
2516
+ while (++index < length) {
2517
+ func = funcs[index];
2518
2518
  var funcName = getFuncName(func), data = funcName == "wrapper" ? getData(func) : undefined$1;
2519
2519
  if (data && isLaziable(data[0]) && data[1] == (WRAP_ARY_FLAG | WRAP_CURRY_FLAG | WRAP_PARTIAL_FLAG | WRAP_REARG_FLAG) && !data[4].length && data[9] == 1) {
2520
2520
  wrapper = wrapper[getFuncName(data[0])].apply(wrapper, data[3]);
@@ -2527,9 +2527,9 @@ lodash.exports;
2527
2527
  if (wrapper && args.length == 1 && isArray2(value)) {
2528
2528
  return wrapper.plant(value).value();
2529
2529
  }
2530
- var index3 = 0, result2 = length ? funcs[index3].apply(this, args) : value;
2531
- while (++index3 < length) {
2532
- result2 = funcs[index3].call(this, result2);
2530
+ var index2 = 0, result2 = length ? funcs[index2].apply(this, args) : value;
2531
+ while (++index2 < length) {
2532
+ result2 = funcs[index2].call(this, result2);
2533
2533
  }
2534
2534
  return result2;
2535
2535
  };
@@ -2539,9 +2539,9 @@ lodash.exports;
2539
2539
  function createHybrid(func, bitmask, thisArg, partials, holders, partialsRight, holdersRight, argPos, ary2, arity) {
2540
2540
  var isAry = bitmask & WRAP_ARY_FLAG, isBind = bitmask & WRAP_BIND_FLAG, isBindKey = bitmask & WRAP_BIND_KEY_FLAG, isCurried = bitmask & (WRAP_CURRY_FLAG | WRAP_CURRY_RIGHT_FLAG), isFlip = bitmask & WRAP_FLIP_FLAG, Ctor = isBindKey ? undefined$1 : createCtor(func);
2541
2541
  function wrapper() {
2542
- var length = arguments.length, args = Array2(length), index2 = length;
2543
- while (index2--) {
2544
- args[index2] = arguments[index2];
2542
+ var length = arguments.length, args = Array2(length), index = length;
2543
+ while (index--) {
2544
+ args[index] = arguments[index];
2545
2545
  }
2546
2546
  if (isCurried) {
2547
2547
  var placeholder = getHolder(wrapper), holdersCount = countHolders(args, placeholder);
@@ -2826,13 +2826,13 @@ lodash.exports;
2826
2826
  if (arrStacked && othStacked) {
2827
2827
  return arrStacked == other && othStacked == array;
2828
2828
  }
2829
- var index2 = -1, result2 = true, seen = bitmask & COMPARE_UNORDERED_FLAG ? new SetCache() : undefined$1;
2829
+ var index = -1, result2 = true, seen = bitmask & COMPARE_UNORDERED_FLAG ? new SetCache() : undefined$1;
2830
2830
  stack.set(array, other);
2831
2831
  stack.set(other, array);
2832
- while (++index2 < arrLength) {
2833
- var arrValue = array[index2], othValue = other[index2];
2832
+ while (++index < arrLength) {
2833
+ var arrValue = array[index], othValue = other[index];
2834
2834
  if (customizer) {
2835
- var compared = isPartial ? customizer(othValue, arrValue, index2, other, array, stack) : customizer(arrValue, othValue, index2, array, other, stack);
2835
+ var compared = isPartial ? customizer(othValue, arrValue, index, other, array, stack) : customizer(arrValue, othValue, index, array, other, stack);
2836
2836
  }
2837
2837
  if (compared !== undefined$1) {
2838
2838
  if (compared) {
@@ -2912,9 +2912,9 @@ lodash.exports;
2912
2912
  if (objLength != othLength && !isPartial) {
2913
2913
  return false;
2914
2914
  }
2915
- var index2 = objLength;
2916
- while (index2--) {
2917
- var key = objProps[index2];
2915
+ var index = objLength;
2916
+ while (index--) {
2917
+ var key = objProps[index];
2918
2918
  if (!(isPartial ? key in other : hasOwnProperty.call(other, key))) {
2919
2919
  return false;
2920
2920
  }
@@ -2928,8 +2928,8 @@ lodash.exports;
2928
2928
  stack.set(object, other);
2929
2929
  stack.set(other, object);
2930
2930
  var skipCtor = isPartial;
2931
- while (++index2 < objLength) {
2932
- key = objProps[index2];
2931
+ while (++index < objLength) {
2932
+ key = objProps[index];
2933
2933
  var objValue = object[key], othValue = other[key];
2934
2934
  if (customizer) {
2935
2935
  var compared = isPartial ? customizer(othValue, objValue, key, other, object, stack) : customizer(objValue, othValue, key, object, other, stack);
@@ -3064,9 +3064,9 @@ lodash.exports;
3064
3064
  }, "getTag");
3065
3065
  }
3066
3066
  function getView(start, end, transforms) {
3067
- var index2 = -1, length = transforms.length;
3068
- while (++index2 < length) {
3069
- var data = transforms[index2], size2 = data.size;
3067
+ var index = -1, length = transforms.length;
3068
+ while (++index < length) {
3069
+ var data = transforms[index], size2 = data.size;
3070
3070
  switch (data.type) {
3071
3071
  case "drop":
3072
3072
  start += size2;
@@ -3092,15 +3092,15 @@ lodash.exports;
3092
3092
  __name(getWrapDetails, "getWrapDetails");
3093
3093
  function hasPath(object, path, hasFunc) {
3094
3094
  path = castPath(path, object);
3095
- var index2 = -1, length = path.length, result2 = false;
3096
- while (++index2 < length) {
3097
- var key = toKey(path[index2]);
3095
+ var index = -1, length = path.length, result2 = false;
3096
+ while (++index < length) {
3097
+ var key = toKey(path[index]);
3098
3098
  if (!(result2 = object != null && hasFunc(object, key))) {
3099
3099
  break;
3100
3100
  }
3101
3101
  object = object[key];
3102
3102
  }
3103
- if (result2 || ++index2 != length) {
3103
+ if (result2 || ++index != length) {
3104
3104
  return result2;
3105
3105
  }
3106
3106
  length = object == null ? 0 : object.length;
@@ -3175,13 +3175,13 @@ lodash.exports;
3175
3175
  return !!length && (type == "number" || type != "symbol" && reIsUint.test(value)) && (value > -1 && value % 1 == 0 && value < length);
3176
3176
  }
3177
3177
  __name(isIndex, "isIndex");
3178
- function isIterateeCall(value, index2, object) {
3178
+ function isIterateeCall(value, index, object) {
3179
3179
  if (!isObject(object)) {
3180
3180
  return false;
3181
3181
  }
3182
- var type = typeof index2;
3183
- if (type == "number" ? isArrayLike(object) && isIndex(index2, object.length) : type == "string" && index2 in object) {
3184
- return eq(object[index2], value);
3182
+ var type = typeof index;
3183
+ if (type == "number" ? isArrayLike(object) && isIndex(index, object.length) : type == "string" && index in object) {
3184
+ return eq(object[index], value);
3185
3185
  }
3186
3186
  return false;
3187
3187
  }
@@ -3302,14 +3302,14 @@ lodash.exports;
3302
3302
  function overRest(func, start, transform2) {
3303
3303
  start = nativeMax(start === undefined$1 ? func.length - 1 : start, 0);
3304
3304
  return function() {
3305
- var args = arguments, index2 = -1, length = nativeMax(args.length - start, 0), array = Array2(length);
3306
- while (++index2 < length) {
3307
- array[index2] = args[start + index2];
3305
+ var args = arguments, index = -1, length = nativeMax(args.length - start, 0), array = Array2(length);
3306
+ while (++index < length) {
3307
+ array[index] = args[start + index];
3308
3308
  }
3309
- index2 = -1;
3309
+ index = -1;
3310
3310
  var otherArgs = Array2(start + 1);
3311
- while (++index2 < start) {
3312
- otherArgs[index2] = args[index2];
3311
+ while (++index < start) {
3312
+ otherArgs[index] = args[index];
3313
3313
  }
3314
3314
  otherArgs[start] = transform2(array);
3315
3315
  return apply(func, this, otherArgs);
@@ -3323,8 +3323,8 @@ lodash.exports;
3323
3323
  function reorder(array, indexes) {
3324
3324
  var arrLength = array.length, length = nativeMin(indexes.length, arrLength), oldArray = copyArray(array);
3325
3325
  while (length--) {
3326
- var index2 = indexes[length];
3327
- array[length] = isIndex(index2, arrLength) ? oldArray[index2] : undefined$1;
3326
+ var index = indexes[length];
3327
+ array[length] = isIndex(index, arrLength) ? oldArray[index] : undefined$1;
3328
3328
  }
3329
3329
  return array;
3330
3330
  }
@@ -3366,12 +3366,12 @@ lodash.exports;
3366
3366
  }
3367
3367
  __name(shortOut, "shortOut");
3368
3368
  function shuffleSelf(array, size2) {
3369
- var index2 = -1, length = array.length, lastIndex = length - 1;
3369
+ var index = -1, length = array.length, lastIndex = length - 1;
3370
3370
  size2 = size2 === undefined$1 ? length : size2;
3371
- while (++index2 < size2) {
3372
- var rand = baseRandom(index2, lastIndex), value = array[rand];
3373
- array[rand] = array[index2];
3374
- array[index2] = value;
3371
+ while (++index < size2) {
3372
+ var rand = baseRandom(index, lastIndex), value = array[rand];
3373
+ array[rand] = array[index];
3374
+ array[index] = value;
3375
3375
  }
3376
3376
  array.length = size2;
3377
3377
  return array;
@@ -3440,17 +3440,17 @@ lodash.exports;
3440
3440
  if (!length || size2 < 1) {
3441
3441
  return [];
3442
3442
  }
3443
- var index2 = 0, resIndex = 0, result2 = Array2(nativeCeil(length / size2));
3444
- while (index2 < length) {
3445
- result2[resIndex++] = baseSlice(array, index2, index2 += size2);
3443
+ var index = 0, resIndex = 0, result2 = Array2(nativeCeil(length / size2));
3444
+ while (index < length) {
3445
+ result2[resIndex++] = baseSlice(array, index, index += size2);
3446
3446
  }
3447
3447
  return result2;
3448
3448
  }
3449
3449
  __name(chunk, "chunk");
3450
3450
  function compact(array) {
3451
- var index2 = -1, length = array == null ? 0 : array.length, resIndex = 0, result2 = [];
3452
- while (++index2 < length) {
3453
- var value = array[index2];
3451
+ var index = -1, length = array == null ? 0 : array.length, resIndex = 0, result2 = [];
3452
+ while (++index < length) {
3453
+ var value = array[index];
3454
3454
  if (value) {
3455
3455
  result2[resIndex++] = value;
3456
3456
  }
@@ -3463,9 +3463,9 @@ lodash.exports;
3463
3463
  if (!length) {
3464
3464
  return [];
3465
3465
  }
3466
- var args = Array2(length - 1), array = arguments[0], index2 = length;
3467
- while (index2--) {
3468
- args[index2 - 1] = arguments[index2];
3466
+ var args = Array2(length - 1), array = arguments[0], index = length;
3467
+ while (index--) {
3468
+ args[index - 1] = arguments[index];
3469
3469
  }
3470
3470
  return arrayPush(isArray2(array) ? copyArray(array) : [array], baseFlatten(args, 1));
3471
3471
  }
@@ -3531,11 +3531,11 @@ lodash.exports;
3531
3531
  if (!length) {
3532
3532
  return -1;
3533
3533
  }
3534
- var index2 = fromIndex == null ? 0 : toInteger(fromIndex);
3535
- if (index2 < 0) {
3536
- index2 = nativeMax(length + index2, 0);
3534
+ var index = fromIndex == null ? 0 : toInteger(fromIndex);
3535
+ if (index < 0) {
3536
+ index = nativeMax(length + index, 0);
3537
3537
  }
3538
- return baseFindIndex(array, getIteratee(predicate, 3), index2);
3538
+ return baseFindIndex(array, getIteratee(predicate, 3), index);
3539
3539
  }
3540
3540
  __name(findIndex, "findIndex");
3541
3541
  function findLastIndex(array, predicate, fromIndex) {
@@ -3543,12 +3543,12 @@ lodash.exports;
3543
3543
  if (!length) {
3544
3544
  return -1;
3545
3545
  }
3546
- var index2 = length - 1;
3546
+ var index = length - 1;
3547
3547
  if (fromIndex !== undefined$1) {
3548
- index2 = toInteger(fromIndex);
3549
- index2 = fromIndex < 0 ? nativeMax(length + index2, 0) : nativeMin(index2, length - 1);
3548
+ index = toInteger(fromIndex);
3549
+ index = fromIndex < 0 ? nativeMax(length + index, 0) : nativeMin(index, length - 1);
3550
3550
  }
3551
- return baseFindIndex(array, getIteratee(predicate, 3), index2, true);
3551
+ return baseFindIndex(array, getIteratee(predicate, 3), index, true);
3552
3552
  }
3553
3553
  __name(findLastIndex, "findLastIndex");
3554
3554
  function flatten(array) {
@@ -3571,9 +3571,9 @@ lodash.exports;
3571
3571
  }
3572
3572
  __name(flattenDepth, "flattenDepth");
3573
3573
  function fromPairs(pairs) {
3574
- var index2 = -1, length = pairs == null ? 0 : pairs.length, result2 = {};
3575
- while (++index2 < length) {
3576
- var pair = pairs[index2];
3574
+ var index = -1, length = pairs == null ? 0 : pairs.length, result2 = {};
3575
+ while (++index < length) {
3576
+ var pair = pairs[index];
3577
3577
  result2[pair[0]] = pair[1];
3578
3578
  }
3579
3579
  return result2;
@@ -3588,11 +3588,11 @@ lodash.exports;
3588
3588
  if (!length) {
3589
3589
  return -1;
3590
3590
  }
3591
- var index2 = fromIndex == null ? 0 : toInteger(fromIndex);
3592
- if (index2 < 0) {
3593
- index2 = nativeMax(length + index2, 0);
3591
+ var index = fromIndex == null ? 0 : toInteger(fromIndex);
3592
+ if (index < 0) {
3593
+ index = nativeMax(length + index, 0);
3594
3594
  }
3595
- return baseIndexOf(array, value, index2);
3595
+ return baseIndexOf(array, value, index);
3596
3596
  }
3597
3597
  __name(indexOf, "indexOf");
3598
3598
  function initial(array) {
@@ -3635,12 +3635,12 @@ lodash.exports;
3635
3635
  if (!length) {
3636
3636
  return -1;
3637
3637
  }
3638
- var index2 = length;
3638
+ var index = length;
3639
3639
  if (fromIndex !== undefined$1) {
3640
- index2 = toInteger(fromIndex);
3641
- index2 = index2 < 0 ? nativeMax(length + index2, 0) : nativeMin(index2, length - 1);
3640
+ index = toInteger(fromIndex);
3641
+ index = index < 0 ? nativeMax(length + index, 0) : nativeMin(index, length - 1);
3642
3642
  }
3643
- return value === value ? strictLastIndexOf(array, value, index2) : baseFindIndex(array, baseIsNaN, index2, true);
3643
+ return value === value ? strictLastIndexOf(array, value, index) : baseFindIndex(array, baseIsNaN, index, true);
3644
3644
  }
3645
3645
  __name(lastIndexOf, "lastIndexOf");
3646
3646
  function nth(array, n) {
@@ -3662,8 +3662,8 @@ lodash.exports;
3662
3662
  __name(pullAllWith, "pullAllWith");
3663
3663
  var pullAt = flatRest(function(array, indexes) {
3664
3664
  var length = array == null ? 0 : array.length, result2 = baseAt(array, indexes);
3665
- basePullAt(array, arrayMap(indexes, function(index2) {
3666
- return isIndex(index2, length) ? +index2 : index2;
3665
+ basePullAt(array, arrayMap(indexes, function(index) {
3666
+ return isIndex(index, length) ? +index : index;
3667
3667
  }).sort(compareAscending));
3668
3668
  return result2;
3669
3669
  });
@@ -3672,13 +3672,13 @@ lodash.exports;
3672
3672
  if (!(array && array.length)) {
3673
3673
  return result2;
3674
3674
  }
3675
- var index2 = -1, indexes = [], length = array.length;
3675
+ var index = -1, indexes = [], length = array.length;
3676
3676
  predicate = getIteratee(predicate, 3);
3677
- while (++index2 < length) {
3678
- var value = array[index2];
3679
- if (predicate(value, index2, array)) {
3677
+ while (++index < length) {
3678
+ var value = array[index];
3679
+ if (predicate(value, index, array)) {
3680
3680
  result2.push(value);
3681
- indexes.push(index2);
3681
+ indexes.push(index);
3682
3682
  }
3683
3683
  }
3684
3684
  basePullAt(array, indexes);
@@ -3715,9 +3715,9 @@ lodash.exports;
3715
3715
  function sortedIndexOf(array, value) {
3716
3716
  var length = array == null ? 0 : array.length;
3717
3717
  if (length) {
3718
- var index2 = baseSortedIndex(array, value);
3719
- if (index2 < length && eq(array[index2], value)) {
3720
- return index2;
3718
+ var index = baseSortedIndex(array, value);
3719
+ if (index < length && eq(array[index], value)) {
3720
+ return index;
3721
3721
  }
3722
3722
  }
3723
3723
  return -1;
@@ -3734,9 +3734,9 @@ lodash.exports;
3734
3734
  function sortedLastIndexOf(array, value) {
3735
3735
  var length = array == null ? 0 : array.length;
3736
3736
  if (length) {
3737
- var index2 = baseSortedIndex(array, value, true) - 1;
3738
- if (eq(array[index2], value)) {
3739
- return index2;
3737
+ var index = baseSortedIndex(array, value, true) - 1;
3738
+ if (eq(array[index], value)) {
3739
+ return index;
3740
3740
  }
3741
3741
  }
3742
3742
  return -1;
@@ -3820,8 +3820,8 @@ lodash.exports;
3820
3820
  return true;
3821
3821
  }
3822
3822
  });
3823
- return baseTimes(length, function(index2) {
3824
- return arrayMap(array, baseProperty(index2));
3823
+ return baseTimes(length, function(index) {
3824
+ return arrayMap(array, baseProperty(index));
3825
3825
  });
3826
3826
  }
3827
3827
  __name(unzip, "unzip");
@@ -4028,9 +4028,9 @@ lodash.exports;
4028
4028
  }
4029
4029
  __name(includes, "includes");
4030
4030
  var invokeMap = baseRest(function(collection, path, args) {
4031
- var index2 = -1, isFunc = typeof path == "function", result2 = isArrayLike(collection) ? Array2(collection.length) : [];
4031
+ var index = -1, isFunc = typeof path == "function", result2 = isArrayLike(collection) ? Array2(collection.length) : [];
4032
4032
  baseEach(collection, function(value) {
4033
- result2[++index2] = isFunc ? apply(path, value, args) : baseInvoke(value, path, args);
4033
+ result2[++index] = isFunc ? apply(path, value, args) : baseInvoke(value, path, args);
4034
4034
  });
4035
4035
  return result2;
4036
4036
  });
@@ -4091,11 +4091,11 @@ lodash.exports;
4091
4091
  return func(collection, n);
4092
4092
  }
4093
4093
  __name(sampleSize, "sampleSize");
4094
- function shuffle(collection) {
4094
+ function shuffle2(collection) {
4095
4095
  var func = isArray2(collection) ? arrayShuffle : baseShuffle;
4096
4096
  return func(collection);
4097
4097
  }
4098
- __name(shuffle, "shuffle");
4098
+ __name(shuffle2, "shuffle");
4099
4099
  function size(collection) {
4100
4100
  if (collection == null) {
4101
4101
  return 0;
@@ -4345,9 +4345,9 @@ lodash.exports;
4345
4345
  transforms = transforms.length == 1 && isArray2(transforms[0]) ? arrayMap(transforms[0], baseUnary(getIteratee())) : arrayMap(baseFlatten(transforms, 1), baseUnary(getIteratee()));
4346
4346
  var funcsLength = transforms.length;
4347
4347
  return baseRest(function(args) {
4348
- var index2 = -1, length = nativeMin(args.length, funcsLength);
4349
- while (++index2 < length) {
4350
- args[index2] = transforms[index2].call(this, args[index2]);
4348
+ var index = -1, length = nativeMin(args.length, funcsLength);
4349
+ while (++index < length) {
4350
+ args[index] = transforms[index].call(this, args[index]);
4351
4351
  }
4352
4352
  return apply(func, this, args);
4353
4353
  });
@@ -4466,7 +4466,7 @@ lodash.exports;
4466
4466
  return value === true || value === false || isObjectLike(value) && baseGetTag(value) == boolTag;
4467
4467
  }
4468
4468
  __name(isBoolean, "isBoolean");
4469
- var isBuffer2 = nativeIsBuffer || stubFalse;
4469
+ var isBuffer = nativeIsBuffer || stubFalse;
4470
4470
  var isDate = nodeIsDate ? baseUnary(nodeIsDate) : baseIsDate;
4471
4471
  function isElement(value) {
4472
4472
  return isObjectLike(value) && value.nodeType === 1 && !isPlainObject(value);
@@ -4476,7 +4476,7 @@ lodash.exports;
4476
4476
  if (value == null) {
4477
4477
  return true;
4478
4478
  }
4479
- if (isArrayLike(value) && (isArray2(value) || typeof value == "string" || typeof value.splice == "function" || isBuffer2(value) || isTypedArray(value) || isArguments(value))) {
4479
+ if (isArrayLike(value) && (isArray2(value) || typeof value == "string" || typeof value.splice == "function" || isBuffer(value) || isTypedArray(value) || isArguments(value))) {
4480
4480
  return !value.length;
4481
4481
  }
4482
4482
  var tag = getTag(value);
@@ -4711,14 +4711,14 @@ lodash.exports;
4711
4711
  __name(create, "create");
4712
4712
  var defaults = baseRest(function(object, sources) {
4713
4713
  object = Object2(object);
4714
- var index2 = -1;
4714
+ var index = -1;
4715
4715
  var length = sources.length;
4716
4716
  var guard = length > 2 ? sources[2] : undefined$1;
4717
4717
  if (guard && isIterateeCall(sources[0], sources[1], guard)) {
4718
4718
  length = 1;
4719
4719
  }
4720
- while (++index2 < length) {
4721
- var source2 = sources[index2];
4720
+ while (++index < length) {
4721
+ var source2 = sources[index];
4722
4722
  var props = keysIn(source2);
4723
4723
  var propsIndex = -1;
4724
4724
  var propsLength = props.length;
@@ -4873,15 +4873,15 @@ lodash.exports;
4873
4873
  __name(pickBy, "pickBy");
4874
4874
  function result(object, path, defaultValue) {
4875
4875
  path = castPath(path, object);
4876
- var index2 = -1, length = path.length;
4876
+ var index = -1, length = path.length;
4877
4877
  if (!length) {
4878
4878
  length = 1;
4879
4879
  object = undefined$1;
4880
4880
  }
4881
- while (++index2 < length) {
4882
- var value = object == null ? undefined$1 : object[toKey(path[index2])];
4881
+ while (++index < length) {
4882
+ var value = object == null ? undefined$1 : object[toKey(path[index])];
4883
4883
  if (value === undefined$1) {
4884
- index2 = length;
4884
+ index = length;
4885
4885
  value = defaultValue;
4886
4886
  }
4887
4887
  object = isFunction(value) ? value.call(object) : value;
@@ -4901,7 +4901,7 @@ lodash.exports;
4901
4901
  var toPairs = createToPairs(keys);
4902
4902
  var toPairsIn = createToPairs(keysIn);
4903
4903
  function transform(object, iteratee2, accumulator) {
4904
- var isArr = isArray2(object), isArrLike = isArr || isBuffer2(object) || isTypedArray(object);
4904
+ var isArr = isArray2(object), isArrLike = isArr || isBuffer(object) || isTypedArray(object);
4905
4905
  iteratee2 = getIteratee(iteratee2, 4);
4906
4906
  if (accumulator == null) {
4907
4907
  var Ctor = object && object.constructor;
@@ -4913,8 +4913,8 @@ lodash.exports;
4913
4913
  accumulator = {};
4914
4914
  }
4915
4915
  }
4916
- (isArrLike ? arrayEach : baseForOwn)(object, function(value, index2, object2) {
4917
- return iteratee2(accumulator, value, index2, object2);
4916
+ (isArrLike ? arrayEach : baseForOwn)(object, function(value, index, object2) {
4917
+ return iteratee2(accumulator, value, index, object2);
4918
4918
  });
4919
4919
  return accumulator;
4920
4920
  }
@@ -4968,7 +4968,7 @@ lodash.exports;
4968
4968
  return baseInRange(number, start, end);
4969
4969
  }
4970
4970
  __name(inRange, "inRange");
4971
- function random(lower, upper, floating) {
4971
+ function random2(lower, upper, floating) {
4972
4972
  if (floating && typeof floating != "boolean" && isIterateeCall(lower, upper, floating)) {
4973
4973
  upper = floating = undefined$1;
4974
4974
  }
@@ -5004,10 +5004,10 @@ lodash.exports;
5004
5004
  }
5005
5005
  return baseRandom(lower, upper);
5006
5006
  }
5007
- __name(random, "random");
5008
- var camelCase = createCompounder(function(result2, word, index2) {
5007
+ __name(random2, "random");
5008
+ var camelCase = createCompounder(function(result2, word, index) {
5009
5009
  word = word.toLowerCase();
5010
- return result2 + (index2 ? capitalize(word) : word);
5010
+ return result2 + (index ? capitalize(word) : word);
5011
5011
  });
5012
5012
  function capitalize(string) {
5013
5013
  return upperFirst(toString(string).toLowerCase());
@@ -5038,11 +5038,11 @@ lodash.exports;
5038
5038
  return string && reHasRegExpChar.test(string) ? string.replace(reRegExpChar, "\\$&") : string;
5039
5039
  }
5040
5040
  __name(escapeRegExp, "escapeRegExp");
5041
- var kebabCase = createCompounder(function(result2, word, index2) {
5042
- return result2 + (index2 ? "-" : "") + word.toLowerCase();
5041
+ var kebabCase = createCompounder(function(result2, word, index) {
5042
+ return result2 + (index ? "-" : "") + word.toLowerCase();
5043
5043
  });
5044
- var lowerCase = createCompounder(function(result2, word, index2) {
5045
- return result2 + (index2 ? " " : "") + word.toLowerCase();
5044
+ var lowerCase = createCompounder(function(result2, word, index) {
5045
+ return result2 + (index ? " " : "") + word.toLowerCase();
5046
5046
  });
5047
5047
  var lowerFirst = createCaseFirst("toLowerCase");
5048
5048
  function pad(string, length, chars) {
@@ -5093,8 +5093,8 @@ lodash.exports;
5093
5093
  return args.length < 3 ? string : string.replace(args[1], args[2]);
5094
5094
  }
5095
5095
  __name(replace, "replace");
5096
- var snakeCase = createCompounder(function(result2, word, index2) {
5097
- return result2 + (index2 ? "_" : "") + word.toLowerCase();
5096
+ var snakeCase = createCompounder(function(result2, word, index) {
5097
+ return result2 + (index ? "_" : "") + word.toLowerCase();
5098
5098
  });
5099
5099
  function split(string, separator, limit) {
5100
5100
  if (limit && typeof limit != "number" && isIterateeCall(string, separator, limit)) {
@@ -5114,8 +5114,8 @@ lodash.exports;
5114
5114
  return string.split(separator, limit);
5115
5115
  }
5116
5116
  __name(split, "split");
5117
- var startCase = createCompounder(function(result2, word, index2) {
5118
- return result2 + (index2 ? " " : "") + upperFirst(word);
5117
+ var startCase = createCompounder(function(result2, word, index) {
5118
+ return result2 + (index ? " " : "") + upperFirst(word);
5119
5119
  });
5120
5120
  function startsWith(string, target, position) {
5121
5121
  string = toString(string);
@@ -5132,7 +5132,7 @@ lodash.exports;
5132
5132
  string = toString(string);
5133
5133
  options = assignInWith({}, options, settings, customDefaultsAssignIn);
5134
5134
  var imports = assignInWith({}, options.imports, settings.imports, customDefaultsAssignIn), importsKeys = keys(imports), importsValues = baseValues(imports, importsKeys);
5135
- var isEscaping, isEvaluating, index2 = 0, interpolate = options.interpolate || reNoMatch, source2 = "__p += '";
5135
+ var isEscaping, isEvaluating, index = 0, interpolate = options.interpolate || reNoMatch, source2 = "__p += '";
5136
5136
  var reDelimiters = RegExp2(
5137
5137
  (options.escape || reNoMatch).source + "|" + interpolate.source + "|" + (interpolate === reInterpolate ? reEsTemplate : reNoMatch).source + "|" + (options.evaluate || reNoMatch).source + "|$",
5138
5138
  "g"
@@ -5140,7 +5140,7 @@ lodash.exports;
5140
5140
  var sourceURL = "//# sourceURL=" + (hasOwnProperty.call(options, "sourceURL") ? (options.sourceURL + "").replace(/\s/g, " ") : "lodash.templateSources[" + ++templateCounter + "]") + "\n";
5141
5141
  string.replace(reDelimiters, function(match, escapeValue, interpolateValue, esTemplateValue, evaluateValue, offset) {
5142
5142
  interpolateValue || (interpolateValue = esTemplateValue);
5143
- source2 += string.slice(index2, offset).replace(reUnescapedString, escapeStringChar);
5143
+ source2 += string.slice(index, offset).replace(reUnescapedString, escapeStringChar);
5144
5144
  if (escapeValue) {
5145
5145
  isEscaping = true;
5146
5146
  source2 += "' +\n__e(" + escapeValue + ") +\n'";
@@ -5152,7 +5152,7 @@ lodash.exports;
5152
5152
  if (interpolateValue) {
5153
5153
  source2 += "' +\n((__t = (" + interpolateValue + ")) == null ? '' : __t) +\n'";
5154
5154
  }
5155
- index2 = offset + match.length;
5155
+ index = offset + match.length;
5156
5156
  return match;
5157
5157
  });
5158
5158
  source2 += "';\n";
@@ -5258,9 +5258,9 @@ lodash.exports;
5258
5258
  result2 = result2.slice(0, newEnd === undefined$1 ? end : newEnd);
5259
5259
  }
5260
5260
  } else if (string.indexOf(baseToString(separator), end) != end) {
5261
- var index2 = result2.lastIndexOf(separator);
5262
- if (index2 > -1) {
5263
- result2 = result2.slice(0, index2);
5261
+ var index = result2.lastIndexOf(separator);
5262
+ if (index > -1) {
5263
+ result2 = result2.slice(0, index);
5264
5264
  }
5265
5265
  }
5266
5266
  return result2 + omission;
@@ -5271,8 +5271,8 @@ lodash.exports;
5271
5271
  return string && reHasEscapedHtml.test(string) ? string.replace(reEscapedHtml, unescapeHtmlChar) : string;
5272
5272
  }
5273
5273
  __name(unescape, "unescape");
5274
- var upperCase = createCompounder(function(result2, word, index2) {
5275
- return result2 + (index2 ? " " : "") + word.toUpperCase();
5274
+ var upperCase = createCompounder(function(result2, word, index) {
5275
+ return result2 + (index ? " " : "") + word.toUpperCase();
5276
5276
  });
5277
5277
  var upperFirst = createCaseFirst("toUpperCase");
5278
5278
  function words(string, pattern, guard) {
@@ -5307,9 +5307,9 @@ lodash.exports;
5307
5307
  return [toIteratee(pair[0]), pair[1]];
5308
5308
  });
5309
5309
  return baseRest(function(args) {
5310
- var index2 = -1;
5311
- while (++index2 < length) {
5312
- var pair = pairs[index2];
5310
+ var index = -1;
5311
+ while (++index < length) {
5312
+ var pair = pairs[index];
5313
5313
  if (apply(pair[0], this, args)) {
5314
5314
  return apply(pair[1], this, args);
5315
5315
  }
@@ -5444,12 +5444,12 @@ lodash.exports;
5444
5444
  if (n < 1 || n > MAX_SAFE_INTEGER) {
5445
5445
  return [];
5446
5446
  }
5447
- var index2 = MAX_ARRAY_LENGTH, length = nativeMin(n, MAX_ARRAY_LENGTH);
5447
+ var index = MAX_ARRAY_LENGTH, length = nativeMin(n, MAX_ARRAY_LENGTH);
5448
5448
  iteratee2 = getIteratee(iteratee2);
5449
5449
  n -= MAX_ARRAY_LENGTH;
5450
5450
  var result2 = baseTimes(length, iteratee2);
5451
- while (++index2 < n) {
5452
- iteratee2(index2);
5451
+ while (++index < n) {
5452
+ iteratee2(index);
5453
5453
  }
5454
5454
  return result2;
5455
5455
  }
@@ -5617,7 +5617,7 @@ lodash.exports;
5617
5617
  lodash2.sampleSize = sampleSize;
5618
5618
  lodash2.set = set;
5619
5619
  lodash2.setWith = setWith;
5620
- lodash2.shuffle = shuffle;
5620
+ lodash2.shuffle = shuffle2;
5621
5621
  lodash2.slice = slice;
5622
5622
  lodash2.sortBy = sortBy;
5623
5623
  lodash2.sortedUniq = sortedUniq;
@@ -5716,7 +5716,7 @@ lodash.exports;
5716
5716
  lodash2.isArrayLike = isArrayLike;
5717
5717
  lodash2.isArrayLikeObject = isArrayLikeObject;
5718
5718
  lodash2.isBoolean = isBoolean;
5719
- lodash2.isBuffer = isBuffer2;
5719
+ lodash2.isBuffer = isBuffer;
5720
5720
  lodash2.isDate = isDate;
5721
5721
  lodash2.isElement = isElement;
5722
5722
  lodash2.isEmpty = isEmpty;
@@ -5775,7 +5775,7 @@ lodash.exports;
5775
5775
  lodash2.padEnd = padEnd;
5776
5776
  lodash2.padStart = padStart;
5777
5777
  lodash2.parseInt = parseInt2;
5778
- lodash2.random = random;
5778
+ lodash2.random = random2;
5779
5779
  lodash2.reduce = reduce;
5780
5780
  lodash2.reduceRight = reduceRight;
5781
5781
  lodash2.repeat = repeat;
@@ -5832,10 +5832,10 @@ lodash.exports;
5832
5832
  arrayEach(["bind", "bindKey", "curry", "curryRight", "partial", "partialRight"], function(methodName) {
5833
5833
  lodash2[methodName].placeholder = lodash2;
5834
5834
  });
5835
- arrayEach(["drop", "take"], function(methodName, index2) {
5835
+ arrayEach(["drop", "take"], function(methodName, index) {
5836
5836
  LazyWrapper.prototype[methodName] = function(n) {
5837
5837
  n = n === undefined$1 ? 1 : nativeMax(toInteger(n), 0);
5838
- var result2 = this.__filtered__ && !index2 ? new LazyWrapper(this) : this.clone();
5838
+ var result2 = this.__filtered__ && !index ? new LazyWrapper(this) : this.clone();
5839
5839
  if (result2.__filtered__) {
5840
5840
  result2.__takeCount__ = nativeMin(n, result2.__takeCount__);
5841
5841
  } else {
@@ -5850,8 +5850,8 @@ lodash.exports;
5850
5850
  return this.reverse()[methodName](n).reverse();
5851
5851
  };
5852
5852
  });
5853
- arrayEach(["filter", "map", "takeWhile"], function(methodName, index2) {
5854
- var type = index2 + 1, isFilter = type == LAZY_FILTER_FLAG || type == LAZY_WHILE_FLAG;
5853
+ arrayEach(["filter", "map", "takeWhile"], function(methodName, index) {
5854
+ var type = index + 1, isFilter = type == LAZY_FILTER_FLAG || type == LAZY_WHILE_FLAG;
5855
5855
  LazyWrapper.prototype[methodName] = function(iteratee2) {
5856
5856
  var result2 = this.clone();
5857
5857
  result2.__iteratees__.push({
@@ -5862,14 +5862,14 @@ lodash.exports;
5862
5862
  return result2;
5863
5863
  };
5864
5864
  });
5865
- arrayEach(["head", "last"], function(methodName, index2) {
5866
- var takeName = "take" + (index2 ? "Right" : "");
5865
+ arrayEach(["head", "last"], function(methodName, index) {
5866
+ var takeName = "take" + (index ? "Right" : "");
5867
5867
  LazyWrapper.prototype[methodName] = function() {
5868
5868
  return this[takeName](1).value()[0];
5869
5869
  };
5870
5870
  });
5871
- arrayEach(["initial", "tail"], function(methodName, index2) {
5872
- var dropName = "drop" + (index2 ? "" : "Right");
5871
+ arrayEach(["initial", "tail"], function(methodName, index) {
5872
+ var dropName = "drop" + (index ? "" : "Right");
5873
5873
  LazyWrapper.prototype[methodName] = function() {
5874
5874
  return this.__filtered__ ? new LazyWrapper(this) : this[dropName](1);
5875
5875
  };
@@ -6558,7 +6558,7 @@ function trimRangeByAnotherRange(rangeToBeTrimmed, trimmingRange, sequenceLength
6558
6558
  rangeToBeTrimmed,
6559
6559
  sequenceLength
6560
6560
  );
6561
- splitRangesToBeTrimmed.forEach(function(nonCircularRangeToBeTrimmed, index2) {
6561
+ splitRangesToBeTrimmed.forEach(function(nonCircularRangeToBeTrimmed, index) {
6562
6562
  overlaps.forEach(function(overlap) {
6563
6563
  if (nonCircularRangeToBeTrimmed) {
6564
6564
  nonCircularRangeToBeTrimmed = trimNonCicularRangeByAnotherNonCircularRange(
@@ -6567,7 +6567,7 @@ function trimRangeByAnotherRange(rangeToBeTrimmed, trimmingRange, sequenceLength
6567
6567
  );
6568
6568
  }
6569
6569
  });
6570
- splitRangesToBeTrimmed[index2] = nonCircularRangeToBeTrimmed;
6570
+ splitRangesToBeTrimmed[index] = nonCircularRangeToBeTrimmed;
6571
6571
  });
6572
6572
  const outputSplitRanges = splitRangesToBeTrimmed.filter(function(trimmedRange) {
6573
6573
  if (trimmedRange) {
@@ -6722,12 +6722,12 @@ function provideInclusiveOptions(funToWrap) {
6722
6722
  const args = Array.prototype.slice.call(arguments);
6723
6723
  const options = args[args.length - 1];
6724
6724
  if (options && (options.inclusive1BasedEnd || options.inclusive1BasedStart)) {
6725
- args.forEach(function(arg, index2) {
6725
+ args.forEach(function(arg, index) {
6726
6726
  if (arg && arg.start > -1 && options.inclusive1BasedStart) {
6727
- args[index2] = lodashExports.assign(arg, { start: arg.start - 1 });
6727
+ args[index] = lodashExports.assign(arg, { start: arg.start - 1 });
6728
6728
  }
6729
6729
  if (arg && arg.end > -1 && options.inclusive1BasedEnd) {
6730
- args[index2] = lodashExports.assign(arg, { end: arg.end - 1 });
6730
+ args[index] = lodashExports.assign(arg, { end: arg.end - 1 });
6731
6731
  }
6732
6732
  });
6733
6733
  }
@@ -6757,7 +6757,7 @@ function getRangeLength$1(range, rangeMax) {
6757
6757
  }
6758
6758
  __name(getRangeLength$1, "getRangeLength$1");
6759
6759
  function isRangeWithinRange(rangeToCheck, containingRange, maxLength) {
6760
- let ranges = trimRangeByAnotherRange(
6760
+ const ranges = trimRangeByAnotherRange(
6761
6761
  rangeToCheck,
6762
6762
  containingRange,
6763
6763
  maxLength
@@ -6922,14 +6922,14 @@ function getShortestDistanceBetweenTwoPositions(position1, position2, sequenceLe
6922
6922
  __name(getShortestDistanceBetweenTwoPositions, "getShortestDistanceBetweenTwoPositions");
6923
6923
  function getYOffsetForPotentiallyCircularRange(range, YOffsetLevelsWithRanges, assignYOffsetToRange) {
6924
6924
  let yOffset = [];
6925
- const openYOffsetFound = YOffsetLevelsWithRanges.some(function(rangesAlreadyAddedToYOffset, index2) {
6925
+ const openYOffsetFound = YOffsetLevelsWithRanges.some(function(rangesAlreadyAddedToYOffset, index) {
6926
6926
  const rangeBlocked = rangesAlreadyAddedToYOffset.some(function(comparisonRange) {
6927
6927
  return checkIfPotentiallyCircularRangesOverlap(range, comparisonRange);
6928
6928
  });
6929
6929
  if (!rangeBlocked) {
6930
- yOffset = index2;
6930
+ yOffset = index;
6931
6931
  if (assignYOffsetToRange)
6932
- range.yOffset = index2;
6932
+ range.yOffset = index;
6933
6933
  rangesAlreadyAddedToYOffset.push(range);
6934
6934
  return true;
6935
6935
  }
@@ -7241,9 +7241,9 @@ function convertApELikeRegexToRegex(regString = "") {
7241
7241
  let isGroupClosed = true;
7242
7242
  let closingBraceHit;
7243
7243
  const groups = [];
7244
- for (let index2 = 0; index2 < newstr.length; index2++) {
7245
- const char = newstr[index2];
7246
- const nextChar = newstr[index2 + 1];
7244
+ for (let index = 0; index < newstr.length; index++) {
7245
+ const char = newstr[index];
7246
+ const nextChar = newstr[index + 1];
7247
7247
  if (char === "[") {
7248
7248
  isGroupClosed = false;
7249
7249
  } else if (char === "]" || closingBraceHit) {
@@ -7421,151 +7421,232 @@ const getFeatureToColorMap = /* @__PURE__ */ __name(({ includeHidden } = {}) =>
7421
7421
  const getFeatureTypes = /* @__PURE__ */ __name(({ includeHidden } = {}) => lodashExports.filter(getMergedFeatureMap(), (f) => includeHidden ? true : !f.isHidden).map(
7422
7422
  (f) => f.name
7423
7423
  ), "getFeatureTypes");
7424
- var MACHINE_ID = Math.floor(Math.random() * 16777215);
7425
- var index = ObjectID.index = parseInt(Math.random() * 16777215, 10);
7426
- var pid = (typeof process === "undefined" || typeof process.pid !== "number" ? Math.floor(Math.random() * 1e5) : process.pid) % 65535;
7427
- var isBuffer = /* @__PURE__ */ __name(function(obj) {
7428
- return !!(obj != null && obj.constructor && typeof obj.constructor.isBuffer === "function" && obj.constructor.isBuffer(obj));
7429
- }, "isBuffer");
7430
- function ObjectID(arg) {
7431
- if (!(this instanceof ObjectID))
7432
- return new ObjectID(arg);
7433
- if (arg && (arg instanceof ObjectID || arg._bsontype === "ObjectID"))
7434
- return arg;
7435
- var buf;
7436
- if (isBuffer(arg) || Array.isArray(arg) && arg.length === 12) {
7437
- buf = Array.prototype.slice.call(arg);
7438
- } else if (typeof arg === "string") {
7439
- if (arg.length !== 12 && !ObjectID.isValid(arg))
7440
- throw new Error("Argument passed in must be a single String of 12 bytes or a string of 24 hex characters");
7441
- buf = buffer(arg);
7442
- } else if (/number|undefined/.test(typeof arg)) {
7443
- buf = buffer(generate(arg));
7444
- }
7445
- Object.defineProperty(this, "id", {
7446
- enumerable: true,
7447
- get: function() {
7448
- return String.fromCharCode.apply(this, buf);
7449
- }
7450
- });
7451
- Object.defineProperty(this, "str", {
7452
- get: function() {
7453
- return buf.map(hex.bind(this, 2)).join("");
7454
- }
7455
- });
7424
+ var lib = { exports: {} };
7425
+ var seed = 1;
7426
+ function getNextValue() {
7427
+ seed = (seed * 9301 + 49297) % 233280;
7428
+ return seed / 233280;
7456
7429
  }
7457
- __name(ObjectID, "ObjectID");
7458
- var objectid = ObjectID;
7459
- ObjectID.generate = generate;
7460
- ObjectID.default = ObjectID;
7461
- ObjectID.createFromTime = function(time) {
7462
- time = parseInt(time, 10) % 4294967295;
7463
- return new ObjectID(hex(8, time) + "0000000000000000");
7464
- };
7465
- ObjectID.createFromHexString = function(hexString) {
7466
- if (!ObjectID.isValid(hexString))
7467
- throw new Error("Invalid ObjectID hex string");
7468
- return new ObjectID(hexString);
7469
- };
7470
- ObjectID.isValid = function(objectid2) {
7471
- if (!objectid2 || typeof objectid2 !== "string" && (typeof objectid2 !== "object" || Array.isArray(objectid2) || typeof objectid2.toString !== "function"))
7472
- return false;
7473
- return /^[0-9A-F]{24}$/i.test(objectid2.toString());
7430
+ __name(getNextValue, "getNextValue");
7431
+ function setSeed$1(_seed_) {
7432
+ seed = _seed_;
7433
+ }
7434
+ __name(setSeed$1, "setSeed$1");
7435
+ var randomFromSeed$1 = {
7436
+ nextValue: getNextValue,
7437
+ seed: setSeed$1
7474
7438
  };
7475
- ObjectID.setMachineID = function(arg) {
7476
- var machineID;
7477
- if (typeof arg === "string") {
7478
- machineID = parseInt(arg, 16);
7479
- if (isNaN(machineID)) {
7480
- arg = ("000000" + arg).substr(-7, 6);
7481
- machineID = "";
7482
- for (var i = 0; i < 6; i++) {
7483
- machineID += arg.charCodeAt(i);
7484
- }
7439
+ var randomFromSeed = randomFromSeed$1;
7440
+ var ORIGINAL = "0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ_-";
7441
+ var alphabet$2;
7442
+ var previousSeed;
7443
+ var shuffled;
7444
+ function reset() {
7445
+ shuffled = false;
7446
+ }
7447
+ __name(reset, "reset");
7448
+ function setCharacters(_alphabet_) {
7449
+ if (!_alphabet_) {
7450
+ if (alphabet$2 !== ORIGINAL) {
7451
+ alphabet$2 = ORIGINAL;
7452
+ reset();
7485
7453
  }
7486
- } else if (/number|undefined/.test(typeof arg)) {
7487
- machineID = arg | 0;
7454
+ return;
7488
7455
  }
7489
- MACHINE_ID = machineID & 16777215;
7490
- };
7491
- ObjectID.getMachineID = function() {
7492
- return MACHINE_ID;
7493
- };
7494
- ObjectID.prototype = {
7495
- _bsontype: "ObjectID",
7496
- constructor: ObjectID,
7497
- /**
7498
- * Return the ObjectID id as a 24 byte hex string representation
7499
- *
7500
- * @return {String} return the 24 byte hex string representation.
7501
- * @api public
7502
- */
7503
- toHexString: function() {
7504
- return this.str;
7505
- },
7506
- /**
7507
- * Compares the equality of this ObjectID with `otherID`.
7508
- *
7509
- * @param {Object} other ObjectID instance to compare against.
7510
- * @return {Boolean} the result of comparing two ObjectID's
7511
- * @api public
7512
- */
7513
- equals: function(other) {
7514
- return !!other && this.str === other.toString();
7515
- },
7516
- /**
7517
- * Returns the generation date (accurate up to the second) that this ID was generated.
7518
- *
7519
- * @return {Date} the generation date
7520
- * @api public
7521
- */
7522
- getTimestamp: function() {
7523
- return new Date(parseInt(this.str.substr(0, 8), 16) * 1e3);
7456
+ if (_alphabet_ === alphabet$2) {
7457
+ return;
7524
7458
  }
7525
- };
7526
- function next() {
7527
- return index = (index + 1) % 16777215;
7459
+ if (_alphabet_.length !== ORIGINAL.length) {
7460
+ throw new Error("Custom alphabet for shortid must be " + ORIGINAL.length + " unique characters. You submitted " + _alphabet_.length + " characters: " + _alphabet_);
7461
+ }
7462
+ var unique = _alphabet_.split("").filter(function(item, ind, arr) {
7463
+ return ind !== arr.lastIndexOf(item);
7464
+ });
7465
+ if (unique.length) {
7466
+ throw new Error("Custom alphabet for shortid must be " + ORIGINAL.length + " unique characters. These characters were not unique: " + unique.join(", "));
7467
+ }
7468
+ alphabet$2 = _alphabet_;
7469
+ reset();
7528
7470
  }
7529
- __name(next, "next");
7530
- function generate(time) {
7531
- if (typeof time !== "number")
7532
- time = Date.now() / 1e3;
7533
- time = parseInt(time, 10) % 4294967295;
7534
- return hex(8, time) + hex(6, MACHINE_ID) + hex(4, pid) + hex(6, next());
7471
+ __name(setCharacters, "setCharacters");
7472
+ function characters(_alphabet_) {
7473
+ setCharacters(_alphabet_);
7474
+ return alphabet$2;
7535
7475
  }
7536
- __name(generate, "generate");
7537
- function hex(length, n) {
7538
- n = n.toString(16);
7539
- return n.length === length ? n : "00000000".substring(n.length, length) + n;
7476
+ __name(characters, "characters");
7477
+ function setSeed(seed2) {
7478
+ randomFromSeed.seed(seed2);
7479
+ if (previousSeed !== seed2) {
7480
+ reset();
7481
+ previousSeed = seed2;
7482
+ }
7540
7483
  }
7541
- __name(hex, "hex");
7542
- function buffer(str) {
7543
- var i = 0, out = [];
7544
- if (str.length === 24)
7545
- for (; i < 24; out.push(parseInt(str[i] + str[i + 1], 16)), i += 2)
7546
- ;
7547
- else if (str.length === 12)
7548
- for (; i < 12; out.push(str.charCodeAt(i)), i++)
7549
- ;
7550
- return out;
7484
+ __name(setSeed, "setSeed");
7485
+ function shuffle() {
7486
+ if (!alphabet$2) {
7487
+ setCharacters(ORIGINAL);
7488
+ }
7489
+ var sourceArray = alphabet$2.split("");
7490
+ var targetArray = [];
7491
+ var r = randomFromSeed.nextValue();
7492
+ var characterIndex;
7493
+ while (sourceArray.length > 0) {
7494
+ r = randomFromSeed.nextValue();
7495
+ characterIndex = Math.floor(r * sourceArray.length);
7496
+ targetArray.push(sourceArray.splice(characterIndex, 1)[0]);
7497
+ }
7498
+ return targetArray.join("");
7499
+ }
7500
+ __name(shuffle, "shuffle");
7501
+ function getShuffled() {
7502
+ if (shuffled) {
7503
+ return shuffled;
7504
+ }
7505
+ shuffled = shuffle();
7506
+ return shuffled;
7551
7507
  }
7552
- __name(buffer, "buffer");
7553
- var inspect = Symbol && Symbol.for("nodejs.util.inspect.custom") || "inspect";
7554
- ObjectID.prototype[inspect] = function() {
7555
- return "ObjectID(" + this + ")";
7508
+ __name(getShuffled, "getShuffled");
7509
+ function lookup(index) {
7510
+ var alphabetShuffled = getShuffled();
7511
+ return alphabetShuffled[index];
7512
+ }
7513
+ __name(lookup, "lookup");
7514
+ function get$2() {
7515
+ return alphabet$2 || ORIGINAL;
7516
+ }
7517
+ __name(get$2, "get$2");
7518
+ var alphabet_1 = {
7519
+ get: get$2,
7520
+ characters,
7521
+ seed: setSeed,
7522
+ lookup,
7523
+ shuffled: getShuffled
7556
7524
  };
7557
- ObjectID.prototype.toJSON = ObjectID.prototype.toHexString;
7558
- ObjectID.prototype.toString = ObjectID.prototype.toHexString;
7559
- const bsonObjectId = /* @__PURE__ */ getDefaultExportFromCjs(objectid);
7525
+ var crypto = typeof window === "object" && (window.crypto || window.msCrypto);
7526
+ var randomByte;
7527
+ if (!crypto || !crypto.getRandomValues) {
7528
+ randomByte = /* @__PURE__ */ __name(function(size) {
7529
+ var bytes = [];
7530
+ for (var i = 0; i < size; i++) {
7531
+ bytes.push(Math.floor(Math.random() * 256));
7532
+ }
7533
+ return bytes;
7534
+ }, "randomByte");
7535
+ } else {
7536
+ randomByte = /* @__PURE__ */ __name(function(size) {
7537
+ return crypto.getRandomValues(new Uint8Array(size));
7538
+ }, "randomByte");
7539
+ }
7540
+ var randomByteBrowser = randomByte;
7541
+ var format_browser = /* @__PURE__ */ __name(function(random2, alphabet2, size) {
7542
+ var mask = (2 << Math.log(alphabet2.length - 1) / Math.LN2) - 1;
7543
+ var step = -~(1.6 * mask * size / alphabet2.length);
7544
+ var id = "";
7545
+ while (true) {
7546
+ var bytes = random2(step);
7547
+ var i = step;
7548
+ while (i--) {
7549
+ id += alphabet2[bytes[i] & mask] || "";
7550
+ if (id.length === +size)
7551
+ return id;
7552
+ }
7553
+ }
7554
+ }, "format_browser");
7555
+ var alphabet$1 = alphabet_1;
7556
+ var random = randomByteBrowser;
7557
+ var format = format_browser;
7558
+ function generate$1(number) {
7559
+ var loopCounter = 0;
7560
+ var done;
7561
+ var str = "";
7562
+ while (!done) {
7563
+ str = str + format(random, alphabet$1.get(), 1);
7564
+ done = number < Math.pow(16, loopCounter + 1);
7565
+ loopCounter++;
7566
+ }
7567
+ return str;
7568
+ }
7569
+ __name(generate$1, "generate$1");
7570
+ var generate_1 = generate$1;
7571
+ var generate = generate_1;
7572
+ var REDUCE_TIME = 1567752802062;
7573
+ var version = 7;
7574
+ var counter;
7575
+ var previousSeconds;
7576
+ function build(clusterWorkerId) {
7577
+ var str = "";
7578
+ var seconds = Math.floor((Date.now() - REDUCE_TIME) * 1e-3);
7579
+ if (seconds === previousSeconds) {
7580
+ counter++;
7581
+ } else {
7582
+ counter = 0;
7583
+ previousSeconds = seconds;
7584
+ }
7585
+ str = str + generate(version);
7586
+ str = str + generate(clusterWorkerId);
7587
+ if (counter > 0) {
7588
+ str = str + generate(counter);
7589
+ }
7590
+ str = str + generate(seconds);
7591
+ return str;
7592
+ }
7593
+ __name(build, "build");
7594
+ var build_1 = build;
7595
+ var alphabet = alphabet_1;
7596
+ function isShortId(id) {
7597
+ if (!id || typeof id !== "string" || id.length < 6) {
7598
+ return false;
7599
+ }
7600
+ var nonAlphabetic = new RegExp("[^" + alphabet.get().replace(/[|\\{}()[\]^$+*?.-]/g, "\\$&") + "]");
7601
+ return !nonAlphabetic.test(id);
7602
+ }
7603
+ __name(isShortId, "isShortId");
7604
+ var isValid = isShortId;
7605
+ (function(module2) {
7606
+ var alphabet2 = alphabet_1;
7607
+ var build2 = build_1;
7608
+ var isValid$1 = isValid;
7609
+ var clusterWorkerId = 0;
7610
+ function seed2(seedValue) {
7611
+ alphabet2.seed(seedValue);
7612
+ return module2.exports;
7613
+ }
7614
+ __name(seed2, "seed");
7615
+ function worker(workerId) {
7616
+ clusterWorkerId = workerId;
7617
+ return module2.exports;
7618
+ }
7619
+ __name(worker, "worker");
7620
+ function characters2(newCharacters) {
7621
+ if (newCharacters !== void 0) {
7622
+ alphabet2.characters(newCharacters);
7623
+ }
7624
+ return alphabet2.shuffled();
7625
+ }
7626
+ __name(characters2, "characters");
7627
+ function generate2() {
7628
+ return build2(clusterWorkerId);
7629
+ }
7630
+ __name(generate2, "generate");
7631
+ module2.exports = generate2;
7632
+ module2.exports.generate = generate2;
7633
+ module2.exports.seed = seed2;
7634
+ module2.exports.worker = worker;
7635
+ module2.exports.characters = characters2;
7636
+ module2.exports.isValid = isValid$1;
7637
+ })(lib);
7638
+ var libExports = lib.exports;
7639
+ var shortid = libExports;
7640
+ const shortid$1 = /* @__PURE__ */ getDefaultExportFromCjs(shortid);
7560
7641
  function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme) {
7561
7642
  if (restrictionEnzyme.forwardRegex.length === 0 || restrictionEnzyme.reverseRegex.length === 0) {
7562
- let returnArray = [];
7643
+ const returnArray = [];
7563
7644
  returnArray.error = "Cannot cut sequence. Enzyme restriction site must be at least 1 bp long.";
7564
7645
  return returnArray;
7565
7646
  }
7566
- let forwardRegExpPattern = new RegExp(restrictionEnzyme.forwardRegex, "ig");
7567
- let sequence = pSequence;
7568
- let cutsitesForward = cutSequence(
7647
+ const forwardRegExpPattern = new RegExp(restrictionEnzyme.forwardRegex, "ig");
7648
+ const sequence = pSequence;
7649
+ const cutsitesForward = cutSequence(
7569
7650
  forwardRegExpPattern,
7570
7651
  restrictionEnzyme,
7571
7652
  sequence,
@@ -7573,7 +7654,7 @@ function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme)
7573
7654
  );
7574
7655
  let cutsitesReverse = [];
7575
7656
  if (restrictionEnzyme.forwardRegex !== restrictionEnzyme.reverseRegex) {
7576
- let revSequence = getReverseComplementSequenceString(sequence);
7657
+ const revSequence = getReverseComplementSequenceString(sequence);
7577
7658
  cutsitesReverse = cutSequence(
7578
7659
  forwardRegExpPattern,
7579
7660
  restrictionEnzyme,
@@ -7641,20 +7722,20 @@ function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme)
7641
7722
  }
7642
7723
  __name(cutSequenceByRestrictionEnzyme, "cutSequenceByRestrictionEnzyme");
7643
7724
  function cutSequence(forwardRegExpPattern, restrictionEnzyme, sequence, circular) {
7644
- let restrictionCutSites = [];
7725
+ const restrictionCutSites = [];
7645
7726
  let restrictionCutSite;
7646
- let recognitionSiteLength = restrictionEnzyme.site.length;
7647
- let originalSequence = sequence;
7648
- let originalSequenceLength = sequence.length;
7727
+ const recognitionSiteLength = restrictionEnzyme.site.length;
7728
+ const originalSequence = sequence;
7729
+ const originalSequenceLength = sequence.length;
7649
7730
  if (circular) {
7650
7731
  sequence += sequence;
7651
7732
  }
7652
- let currentSequenceLength = sequence.length;
7733
+ const currentSequenceLength = sequence.length;
7653
7734
  let matchIndex = sequence.search(forwardRegExpPattern);
7654
7735
  let startIndex = 0;
7655
7736
  let subSequence = sequence;
7656
7737
  while (matchIndex !== -1) {
7657
- let recognitionSiteRange = {};
7738
+ const recognitionSiteRange = {};
7658
7739
  let start;
7659
7740
  let end;
7660
7741
  let upstreamTopSnip = null;
@@ -7762,9 +7843,9 @@ function cutSequence(forwardRegExpPattern, restrictionEnzyme, sequence, circular
7762
7843
  )
7763
7844
  };
7764
7845
  }
7765
- let overhangBps = getSequenceWithinRange(cutRange, originalSequence);
7846
+ const overhangBps = getSequenceWithinRange(cutRange, originalSequence);
7766
7847
  restrictionCutSite = {
7767
- id: bsonObjectId().str,
7848
+ id: shortid$1(),
7768
7849
  start,
7769
7850
  end,
7770
7851
  topSnipPosition,
@@ -7822,7 +7903,7 @@ function computeDigestFragments({
7822
7903
  });
7823
7904
  if (!circular && cutsites.length) {
7824
7905
  sortedCutsites.push({
7825
- id: "seqTerm_" + bsonObjectId().str,
7906
+ id: "seqTerm_" + shortid$1(),
7826
7907
  start: 0,
7827
7908
  end: 0,
7828
7909
  overhangBps: "",
@@ -7843,19 +7924,19 @@ function computeDigestFragments({
7843
7924
  }
7844
7925
  });
7845
7926
  }
7846
- sortedCutsites.forEach((cutsite1, index2) => {
7927
+ sortedCutsites.forEach((cutsite1, index) => {
7847
7928
  if (computePartialDigest && !computePartialDigestDisabled) {
7848
- sortedCutsites.forEach((cs, index22) => {
7849
- if (index22 === index2 + 1 || index22 === 0) {
7929
+ sortedCutsites.forEach((cs, index2) => {
7930
+ if (index2 === index + 1 || index2 === 0) {
7850
7931
  return;
7851
7932
  }
7852
- pairs.push([cutsite1, sortedCutsites[index22]]);
7933
+ pairs.push([cutsite1, sortedCutsites[index2]]);
7853
7934
  });
7854
7935
  }
7855
7936
  if (!computeDigestDisabled) {
7856
7937
  pairs.push([
7857
7938
  cutsite1,
7858
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
7939
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
7859
7940
  ]);
7860
7941
  }
7861
7942
  });
@@ -8334,11 +8415,11 @@ var diffMatchPatch = { exports: {} };
8334
8415
  }
8335
8416
  var dmp2 = this;
8336
8417
  function diff_halfMatchI_(longtext2, shorttext2, i) {
8337
- var seed = longtext2.substring(i, i + Math.floor(longtext2.length / 4));
8418
+ var seed2 = longtext2.substring(i, i + Math.floor(longtext2.length / 4));
8338
8419
  var j = -1;
8339
8420
  var best_common = "";
8340
8421
  var best_longtext_a, best_longtext_b, best_shorttext_a, best_shorttext_b;
8341
- while ((j = shorttext2.indexOf(seed, j + 1)) != -1) {
8422
+ while ((j = shorttext2.indexOf(seed2, j + 1)) != -1) {
8342
8423
  var prefixLength = dmp2.diff_commonPrefix(
8343
8424
  longtext2.substring(i),
8344
8425
  shorttext2.substring(j)
@@ -10542,30 +10623,30 @@ var browser = {
10542
10623
  stderr: false
10543
10624
  };
10544
10625
  const stringReplaceAll$1 = /* @__PURE__ */ __name((string, substring, replacer) => {
10545
- let index2 = string.indexOf(substring);
10546
- if (index2 === -1) {
10626
+ let index = string.indexOf(substring);
10627
+ if (index === -1) {
10547
10628
  return string;
10548
10629
  }
10549
10630
  const substringLength = substring.length;
10550
10631
  let endIndex = 0;
10551
10632
  let returnValue = "";
10552
10633
  do {
10553
- returnValue += string.substr(endIndex, index2 - endIndex) + substring + replacer;
10554
- endIndex = index2 + substringLength;
10555
- index2 = string.indexOf(substring, endIndex);
10556
- } while (index2 !== -1);
10634
+ returnValue += string.substr(endIndex, index - endIndex) + substring + replacer;
10635
+ endIndex = index + substringLength;
10636
+ index = string.indexOf(substring, endIndex);
10637
+ } while (index !== -1);
10557
10638
  returnValue += string.substr(endIndex);
10558
10639
  return returnValue;
10559
10640
  }, "stringReplaceAll$1");
10560
- const stringEncaseCRLFWithFirstIndex$1 = /* @__PURE__ */ __name((string, prefix, postfix, index2) => {
10641
+ const stringEncaseCRLFWithFirstIndex$1 = /* @__PURE__ */ __name((string, prefix, postfix, index) => {
10561
10642
  let endIndex = 0;
10562
10643
  let returnValue = "";
10563
10644
  do {
10564
- const gotCR = string[index2 - 1] === "\r";
10565
- returnValue += string.substr(endIndex, (gotCR ? index2 - 1 : index2) - endIndex) + prefix + (gotCR ? "\r\n" : "\n") + postfix;
10566
- endIndex = index2 + 1;
10567
- index2 = string.indexOf("\n", endIndex);
10568
- } while (index2 !== -1);
10645
+ const gotCR = string[index - 1] === "\r";
10646
+ returnValue += string.substr(endIndex, (gotCR ? index - 1 : index) - endIndex) + prefix + (gotCR ? "\r\n" : "\n") + postfix;
10647
+ endIndex = index + 1;
10648
+ index = string.indexOf("\n", endIndex);
10649
+ } while (index !== -1);
10569
10650
  returnValue += string.substr(endIndex);
10570
10651
  return returnValue;
10571
10652
  }, "stringEncaseCRLFWithFirstIndex$1");
@@ -10976,7 +11057,7 @@ var Processor = function() {
10976
11057
  }, "pipe")
10977
11058
  }, {
10978
11059
  key: "process",
10979
- value: /* @__PURE__ */ __name(function process2(input, pipe) {
11060
+ value: /* @__PURE__ */ __name(function process(input, pipe) {
10980
11061
  var context = input;
10981
11062
  context.options = this.options();
10982
11063
  var nextPipe = pipe || input.pipe || "default";
@@ -11015,15 +11096,15 @@ var Pipe = function() {
11015
11096
  __name(Pipe2, "Pipe");
11016
11097
  createClass(Pipe2, [{
11017
11098
  key: "process",
11018
- value: /* @__PURE__ */ __name(function process2(input) {
11099
+ value: /* @__PURE__ */ __name(function process(input) {
11019
11100
  if (!this.processor) {
11020
11101
  throw new Error("add this pipe to a processor before using it");
11021
11102
  }
11022
11103
  var debug = this.debug;
11023
11104
  var length = this.filters.length;
11024
11105
  var context = input;
11025
- for (var index2 = 0; index2 < length; index2++) {
11026
- var filter = this.filters[index2];
11106
+ for (var index = 0; index < length; index++) {
11107
+ var filter = this.filters[index];
11027
11108
  if (debug) {
11028
11109
  this.log("filter: " + filter.filterName);
11029
11110
  }
@@ -11062,10 +11143,10 @@ var Pipe = function() {
11062
11143
  if (!filterName) {
11063
11144
  throw new Error("a filter name is required");
11064
11145
  }
11065
- for (var index2 = 0; index2 < this.filters.length; index2++) {
11066
- var filter = this.filters[index2];
11146
+ for (var index = 0; index < this.filters.length; index++) {
11147
+ var filter = this.filters[index];
11067
11148
  if (filter.filterName === filterName) {
11068
- return index2;
11149
+ return index;
11069
11150
  }
11070
11151
  }
11071
11152
  throw new Error("filter not found: " + filterName);
@@ -11080,44 +11161,44 @@ var Pipe = function() {
11080
11161
  }, {
11081
11162
  key: "after",
11082
11163
  value: /* @__PURE__ */ __name(function after(filterName) {
11083
- var index2 = this.indexOf(filterName);
11164
+ var index = this.indexOf(filterName);
11084
11165
  var params = Array.prototype.slice.call(arguments, 1);
11085
11166
  if (!params.length) {
11086
11167
  throw new Error("a filter is required");
11087
11168
  }
11088
- params.unshift(index2 + 1, 0);
11169
+ params.unshift(index + 1, 0);
11089
11170
  Array.prototype.splice.apply(this.filters, params);
11090
11171
  return this;
11091
11172
  }, "after")
11092
11173
  }, {
11093
11174
  key: "before",
11094
11175
  value: /* @__PURE__ */ __name(function before(filterName) {
11095
- var index2 = this.indexOf(filterName);
11176
+ var index = this.indexOf(filterName);
11096
11177
  var params = Array.prototype.slice.call(arguments, 1);
11097
11178
  if (!params.length) {
11098
11179
  throw new Error("a filter is required");
11099
11180
  }
11100
- params.unshift(index2, 0);
11181
+ params.unshift(index, 0);
11101
11182
  Array.prototype.splice.apply(this.filters, params);
11102
11183
  return this;
11103
11184
  }, "before")
11104
11185
  }, {
11105
11186
  key: "replace",
11106
11187
  value: /* @__PURE__ */ __name(function replace(filterName) {
11107
- var index2 = this.indexOf(filterName);
11188
+ var index = this.indexOf(filterName);
11108
11189
  var params = Array.prototype.slice.call(arguments, 1);
11109
11190
  if (!params.length) {
11110
11191
  throw new Error("a filter is required");
11111
11192
  }
11112
- params.unshift(index2, 1);
11193
+ params.unshift(index, 1);
11113
11194
  Array.prototype.splice.apply(this.filters, params);
11114
11195
  return this;
11115
11196
  }, "replace")
11116
11197
  }, {
11117
11198
  key: "remove",
11118
11199
  value: /* @__PURE__ */ __name(function remove(filterName) {
11119
- var index2 = this.indexOf(filterName);
11120
- this.filters.splice(index2, 1);
11200
+ var index = this.indexOf(filterName);
11201
+ this.filters.splice(index, 1);
11121
11202
  return this;
11122
11203
  }, "remove")
11123
11204
  }, {
@@ -11170,11 +11251,11 @@ var Context = function() {
11170
11251
  }, "exit")
11171
11252
  }, {
11172
11253
  key: "switchTo",
11173
- value: /* @__PURE__ */ __name(function switchTo(next2, pipe) {
11174
- if (typeof next2 === "string" || next2 instanceof Pipe) {
11175
- this.nextPipe = next2;
11254
+ value: /* @__PURE__ */ __name(function switchTo(next, pipe) {
11255
+ if (typeof next === "string" || next instanceof Pipe) {
11256
+ this.nextPipe = next;
11176
11257
  } else {
11177
- this.next = next2;
11258
+ this.next = next;
11178
11259
  if (pipe) {
11179
11260
  this.nextPipe = pipe;
11180
11261
  }
@@ -11399,8 +11480,8 @@ function collectChildrenDiffFilter(context) {
11399
11480
  var length = context.children.length;
11400
11481
  var child = void 0;
11401
11482
  var result = context.result;
11402
- for (var index2 = 0; index2 < length; index2++) {
11403
- child = context.children[index2];
11483
+ for (var index = 0; index < length; index++) {
11484
+ child = context.children[index];
11404
11485
  if (typeof child.result === "undefined") {
11405
11486
  continue;
11406
11487
  }
@@ -11476,8 +11557,8 @@ var collectChildrenPatchFilter = /* @__PURE__ */ __name(function collectChildren
11476
11557
  }
11477
11558
  var length = context.children.length;
11478
11559
  var child = void 0;
11479
- for (var index2 = 0; index2 < length; index2++) {
11480
- child = context.children[index2];
11560
+ for (var index = 0; index < length; index++) {
11561
+ child = context.children[index];
11481
11562
  if (Object.prototype.hasOwnProperty.call(context.left, child.childName) && child.result === void 0) {
11482
11563
  delete context.left[child.childName];
11483
11564
  } else if (context.left[child.childName] !== child.result) {
@@ -11513,8 +11594,8 @@ function collectChildrenReverseFilter(context) {
11513
11594
  var length = context.children.length;
11514
11595
  var child = void 0;
11515
11596
  var delta = {};
11516
- for (var index2 = 0; index2 < length; index2++) {
11517
- child = context.children[index2];
11597
+ for (var index = 0; index < length; index++) {
11598
+ child = context.children[index];
11518
11599
  if (delta[child.childName] !== child.result) {
11519
11600
  delta[child.childName] = child.result;
11520
11601
  }
@@ -11668,9 +11749,9 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11668
11749
  };
11669
11750
  var commonHead = 0;
11670
11751
  var commonTail = 0;
11671
- var index2 = void 0;
11752
+ var index = void 0;
11672
11753
  var index1 = void 0;
11673
- var index22 = void 0;
11754
+ var index2 = void 0;
11674
11755
  var array1 = context.left;
11675
11756
  var array2 = context.right;
11676
11757
  var len1 = array1.length;
@@ -11680,16 +11761,16 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11680
11761
  matchContext.matchByPosition = !arraysHaveMatchByRef(array1, array2, len1, len2);
11681
11762
  }
11682
11763
  while (commonHead < len1 && commonHead < len2 && matchItems(array1, array2, commonHead, commonHead, matchContext)) {
11683
- index2 = commonHead;
11684
- child = new DiffContext(context.left[index2], context.right[index2]);
11685
- context.push(child, index2);
11764
+ index = commonHead;
11765
+ child = new DiffContext(context.left[index], context.right[index]);
11766
+ context.push(child, index);
11686
11767
  commonHead++;
11687
11768
  }
11688
11769
  while (commonTail + commonHead < len1 && commonTail + commonHead < len2 && matchItems(array1, array2, len1 - 1 - commonTail, len2 - 1 - commonTail, matchContext)) {
11689
11770
  index1 = len1 - 1 - commonTail;
11690
- index22 = len2 - 1 - commonTail;
11691
- child = new DiffContext(context.left[index1], context.right[index22]);
11692
- context.push(child, index22);
11771
+ index2 = len2 - 1 - commonTail;
11772
+ child = new DiffContext(context.left[index1], context.right[index2]);
11773
+ context.push(child, index2);
11693
11774
  commonTail++;
11694
11775
  }
11695
11776
  var result = void 0;
@@ -11701,8 +11782,8 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11701
11782
  result = result || {
11702
11783
  _t: "a"
11703
11784
  };
11704
- for (index2 = commonHead; index2 < len2 - commonTail; index2++) {
11705
- result[index2] = [array2[index2]];
11785
+ for (index = commonHead; index < len2 - commonTail; index++) {
11786
+ result[index] = [array2[index]];
11706
11787
  }
11707
11788
  context.setResult(result).exit();
11708
11789
  return;
@@ -11711,8 +11792,8 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11711
11792
  result = result || {
11712
11793
  _t: "a"
11713
11794
  };
11714
- for (index2 = commonHead; index2 < len1 - commonTail; index2++) {
11715
- result["_" + index2] = [array1[index2], 0, 0];
11795
+ for (index = commonHead; index < len1 - commonTail; index++) {
11796
+ result["_" + index] = [array1[index], 0, 0];
11716
11797
  }
11717
11798
  context.setResult(result).exit();
11718
11799
  return;
@@ -11726,10 +11807,10 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11726
11807
  result = result || {
11727
11808
  _t: "a"
11728
11809
  };
11729
- for (index2 = commonHead; index2 < len1 - commonTail; index2++) {
11730
- if (arrayIndexOf(seq.indices1, index2 - commonHead) < 0) {
11731
- result["_" + index2] = [array1[index2], 0, 0];
11732
- removedItems.push(index2);
11810
+ for (index = commonHead; index < len1 - commonTail; index++) {
11811
+ if (arrayIndexOf(seq.indices1, index - commonHead) < 0) {
11812
+ result["_" + index] = [array1[index], 0, 0];
11813
+ removedItems.push(index);
11733
11814
  }
11734
11815
  }
11735
11816
  var detectMove = true;
@@ -11741,21 +11822,21 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11741
11822
  includeValueOnMove = true;
11742
11823
  }
11743
11824
  var removedItemsLength = removedItems.length;
11744
- for (index2 = commonHead; index2 < len2 - commonTail; index2++) {
11745
- var indexOnArray2 = arrayIndexOf(seq.indices2, index2 - commonHead);
11825
+ for (index = commonHead; index < len2 - commonTail; index++) {
11826
+ var indexOnArray2 = arrayIndexOf(seq.indices2, index - commonHead);
11746
11827
  if (indexOnArray2 < 0) {
11747
11828
  var isMove = false;
11748
11829
  if (detectMove && removedItemsLength > 0) {
11749
11830
  for (var removeItemIndex1 = 0; removeItemIndex1 < removedItemsLength; removeItemIndex1++) {
11750
11831
  index1 = removedItems[removeItemIndex1];
11751
- if (matchItems(trimmed1, trimmed2, index1 - commonHead, index2 - commonHead, matchContext)) {
11752
- result["_" + index1].splice(1, 2, index2, ARRAY_MOVE);
11832
+ if (matchItems(trimmed1, trimmed2, index1 - commonHead, index - commonHead, matchContext)) {
11833
+ result["_" + index1].splice(1, 2, index, ARRAY_MOVE);
11753
11834
  if (!includeValueOnMove) {
11754
11835
  result["_" + index1][0] = "";
11755
11836
  }
11756
- index22 = index2;
11757
- child = new DiffContext(context.left[index1], context.right[index22]);
11758
- context.push(child, index22);
11837
+ index2 = index;
11838
+ child = new DiffContext(context.left[index1], context.right[index2]);
11839
+ context.push(child, index2);
11759
11840
  removedItems.splice(removeItemIndex1, 1);
11760
11841
  isMove = true;
11761
11842
  break;
@@ -11763,13 +11844,13 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11763
11844
  }
11764
11845
  }
11765
11846
  if (!isMove) {
11766
- result[index2] = [array2[index2]];
11847
+ result[index] = [array2[index]];
11767
11848
  }
11768
11849
  } else {
11769
11850
  index1 = seq.indices1[indexOnArray2] + commonHead;
11770
- index22 = seq.indices2[indexOnArray2] + commonHead;
11771
- child = new DiffContext(context.left[index1], context.right[index22]);
11772
- context.push(child, index22);
11851
+ index2 = seq.indices2[indexOnArray2] + commonHead;
11852
+ child = new DiffContext(context.left[index1], context.right[index2]);
11853
+ context.push(child, index2);
11773
11854
  }
11774
11855
  }
11775
11856
  context.setResult(result).exit();
@@ -11792,39 +11873,39 @@ var patchFilter$2 = /* @__PURE__ */ __name(function nestedPatchFilter2(context)
11792
11873
  if (context.delta._t !== "a") {
11793
11874
  return;
11794
11875
  }
11795
- var index2 = void 0;
11876
+ var index = void 0;
11796
11877
  var index1 = void 0;
11797
11878
  var delta = context.delta;
11798
11879
  var array = context.left;
11799
11880
  var toRemove = [];
11800
11881
  var toInsert = [];
11801
11882
  var toModify = [];
11802
- for (index2 in delta) {
11803
- if (index2 !== "_t") {
11804
- if (index2[0] === "_") {
11805
- if (delta[index2][2] === 0 || delta[index2][2] === ARRAY_MOVE) {
11806
- toRemove.push(parseInt(index2.slice(1), 10));
11883
+ for (index in delta) {
11884
+ if (index !== "_t") {
11885
+ if (index[0] === "_") {
11886
+ if (delta[index][2] === 0 || delta[index][2] === ARRAY_MOVE) {
11887
+ toRemove.push(parseInt(index.slice(1), 10));
11807
11888
  } else {
11808
- throw new Error("only removal or move can be applied at original array indices," + (" invalid diff type: " + delta[index2][2]));
11889
+ throw new Error("only removal or move can be applied at original array indices," + (" invalid diff type: " + delta[index][2]));
11809
11890
  }
11810
11891
  } else {
11811
- if (delta[index2].length === 1) {
11892
+ if (delta[index].length === 1) {
11812
11893
  toInsert.push({
11813
- index: parseInt(index2, 10),
11814
- value: delta[index2][0]
11894
+ index: parseInt(index, 10),
11895
+ value: delta[index][0]
11815
11896
  });
11816
11897
  } else {
11817
11898
  toModify.push({
11818
- index: parseInt(index2, 10),
11819
- delta: delta[index2]
11899
+ index: parseInt(index, 10),
11900
+ delta: delta[index]
11820
11901
  });
11821
11902
  }
11822
11903
  }
11823
11904
  }
11824
11905
  }
11825
11906
  toRemove = toRemove.sort(compare.numerically);
11826
- for (index2 = toRemove.length - 1; index2 >= 0; index2--) {
11827
- index1 = toRemove[index2];
11907
+ for (index = toRemove.length - 1; index >= 0; index--) {
11908
+ index1 = toRemove[index];
11828
11909
  var indexDiff = delta["_" + index1];
11829
11910
  var removedValue = array.splice(index1, 1)[0];
11830
11911
  if (indexDiff[2] === ARRAY_MOVE) {
@@ -11836,15 +11917,15 @@ var patchFilter$2 = /* @__PURE__ */ __name(function nestedPatchFilter2(context)
11836
11917
  }
11837
11918
  toInsert = toInsert.sort(compare.numericallyBy("index"));
11838
11919
  var toInsertLength = toInsert.length;
11839
- for (index2 = 0; index2 < toInsertLength; index2++) {
11840
- var insertion = toInsert[index2];
11920
+ for (index = 0; index < toInsertLength; index++) {
11921
+ var insertion = toInsert[index];
11841
11922
  array.splice(insertion.index, 0, insertion.value);
11842
11923
  }
11843
11924
  var toModifyLength = toModify.length;
11844
11925
  var child = void 0;
11845
11926
  if (toModifyLength > 0) {
11846
- for (index2 = 0; index2 < toModifyLength; index2++) {
11847
- var modification = toModify[index2];
11927
+ for (index = 0; index < toModifyLength; index++) {
11928
+ var modification = toModify[index];
11848
11929
  child = new PatchContext(context.left[modification.index], modification.delta);
11849
11930
  context.push(child, modification.index);
11850
11931
  }
@@ -11865,8 +11946,8 @@ var collectChildrenPatchFilter$1 = /* @__PURE__ */ __name(function collectChildr
11865
11946
  }
11866
11947
  var length = context.children.length;
11867
11948
  var child = void 0;
11868
- for (var index2 = 0; index2 < length; index2++) {
11869
- child = context.children[index2];
11949
+ for (var index = 0; index < length; index++) {
11950
+ child = context.children[index];
11870
11951
  context.left[child.childName] = child.result;
11871
11952
  }
11872
11953
  context.setResult(context.left).exit();
@@ -11895,20 +11976,20 @@ var reverseFilter$2 = /* @__PURE__ */ __name(function arraysReverseFilter(contex
11895
11976
  context.exit();
11896
11977
  }, "arraysReverseFilter");
11897
11978
  reverseFilter$2.filterName = "arrays";
11898
- var reverseArrayDeltaIndex = /* @__PURE__ */ __name(function reverseArrayDeltaIndex2(delta, index2, itemDelta) {
11899
- if (typeof index2 === "string" && index2[0] === "_") {
11900
- return parseInt(index2.substr(1), 10);
11979
+ var reverseArrayDeltaIndex = /* @__PURE__ */ __name(function reverseArrayDeltaIndex2(delta, index, itemDelta) {
11980
+ if (typeof index === "string" && index[0] === "_") {
11981
+ return parseInt(index.substr(1), 10);
11901
11982
  } else if (isArray$2(itemDelta) && itemDelta[2] === 0) {
11902
- return "_" + index2;
11983
+ return "_" + index;
11903
11984
  }
11904
- var reverseIndex = +index2;
11985
+ var reverseIndex = +index;
11905
11986
  for (var deltaIndex in delta) {
11906
11987
  var deltaItem = delta[deltaIndex];
11907
11988
  if (isArray$2(deltaItem)) {
11908
11989
  if (deltaItem[2] === ARRAY_MOVE) {
11909
11990
  var moveFromIndex = parseInt(deltaIndex.substr(1), 10);
11910
11991
  var moveToIndex = deltaItem[1];
11911
- if (moveToIndex === +index2) {
11992
+ if (moveToIndex === +index) {
11912
11993
  return moveFromIndex;
11913
11994
  }
11914
11995
  if (moveFromIndex <= reverseIndex && moveToIndex > reverseIndex) {
@@ -11940,8 +12021,8 @@ function collectChildrenReverseFilter$1(context) {
11940
12021
  var delta = {
11941
12022
  _t: "a"
11942
12023
  };
11943
- for (var index2 = 0; index2 < length; index2++) {
11944
- child = context.children[index2];
12024
+ for (var index = 0; index < length; index++) {
12025
+ child = context.children[index];
11945
12026
  var name = child.newName;
11946
12027
  if (typeof name === "undefined") {
11947
12028
  name = reverseArrayDeltaIndex(context.delta, child.childName, child.result);
@@ -12165,7 +12246,7 @@ var BaseFormatter = function() {
12165
12246
  __name(BaseFormatter2, "BaseFormatter");
12166
12247
  createClass(BaseFormatter2, [{
12167
12248
  key: "format",
12168
- value: /* @__PURE__ */ __name(function format(delta, left) {
12249
+ value: /* @__PURE__ */ __name(function format2(delta, left) {
12169
12250
  var context = {};
12170
12251
  this.prepareContext(context);
12171
12252
  this.recurse(context, delta, left);
@@ -12193,9 +12274,9 @@ var BaseFormatter = function() {
12193
12274
  }, {
12194
12275
  key: "finalize",
12195
12276
  value: /* @__PURE__ */ __name(function finalize(_ref) {
12196
- var buffer2 = _ref.buffer;
12197
- if (isArray$3(buffer2)) {
12198
- return buffer2.join("");
12277
+ var buffer = _ref.buffer;
12278
+ if (isArray$3(buffer)) {
12279
+ return buffer.join("");
12199
12280
  }
12200
12281
  }, "finalize")
12201
12282
  }, {
@@ -12274,13 +12355,13 @@ var BaseFormatter = function() {
12274
12355
  } else {
12275
12356
  keys.sort();
12276
12357
  }
12277
- for (var index2 = 0, length = keys.length; index2 < length; index2++) {
12278
- var key = keys[index2];
12358
+ for (var index = 0, length = keys.length; index < length; index++) {
12359
+ var key = keys[index];
12279
12360
  if (arrayKeys && key === "_t") {
12280
12361
  continue;
12281
12362
  }
12282
12363
  var leftKey = arrayKeys ? typeof key === "number" ? key : parseInt(trimUnderscore(key), 10) : key;
12283
- var isLast = index2 === length - 1;
12364
+ var isLast = index === length - 1;
12284
12365
  fn(key, leftKey, moveDestinations[leftKey], isLast);
12285
12366
  }
12286
12367
  }, "forEachDeltaKey")
@@ -12822,7 +12903,7 @@ var OPERATIONS = {
12822
12903
  }, "format_textdiff")
12823
12904
  }, {
12824
12905
  key: "format",
12825
- value: /* @__PURE__ */ __name(function format(delta, left) {
12906
+ value: /* @__PURE__ */ __name(function format2(delta, left) {
12826
12907
  var context = {};
12827
12908
  this.prepareContext(context);
12828
12909
  this.recurse(context, delta, left);
@@ -13409,7 +13490,7 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
13409
13490
  if (sequenceString.length !== 3) {
13410
13491
  throw new Error("must pass a string of length 3");
13411
13492
  }
13412
- let aa = threeLetterSequenceStringToAminoAcidMap[sequenceString];
13493
+ const aa = threeLetterSequenceStringToAminoAcidMap[sequenceString];
13413
13494
  if (aa) {
13414
13495
  return aa;
13415
13496
  }
@@ -13421,7 +13502,7 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
13421
13502
  }
13422
13503
  __name(getAminoAcidFromSequenceTriplet, "getAminoAcidFromSequenceTriplet");
13423
13504
  function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
13424
- let originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
13505
+ const originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
13425
13506
  let sequenceString = originalSequenceString;
13426
13507
  let startOffset = 0;
13427
13508
  if (optionalSubrangeRange) {
@@ -13431,8 +13512,8 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13431
13512
  );
13432
13513
  startOffset = optionalSubrangeRange.start;
13433
13514
  }
13434
- let sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
13435
- let aminoAcidDataForEachBaseOfDNA = [];
13515
+ const sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
13516
+ const aminoAcidDataForEachBaseOfDNA = [];
13436
13517
  let codonRange;
13437
13518
  let revCompGapLength = 0;
13438
13519
  let aminoAcidIndex = 0;
@@ -13462,12 +13543,12 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13462
13543
  aminoAcidIndex--;
13463
13544
  }
13464
13545
  }
13465
- for (let index2 = 2 + revCompGapLength; index2 < sequenceStringLength; index2 += 3) {
13546
+ for (let index = 2 + revCompGapLength; index < sequenceStringLength; index += 3) {
13466
13547
  let aminoAcid;
13467
13548
  if (isProteinSequence) {
13468
- aminoAcid = proteinAlphabet[sequenceString[(index2 - 2) / 3].toUpperCase()];
13549
+ aminoAcid = proteinAlphabet[sequenceString[(index - 2) / 3].toUpperCase()];
13469
13550
  } else {
13470
- let triplet = sequenceString.slice(index2 - 2, index2 + 1);
13551
+ let triplet = sequenceString.slice(index - 2, index + 1);
13471
13552
  if (!forward) {
13472
13553
  triplet = getReverseComplementSequenceString(triplet);
13473
13554
  }
@@ -13475,8 +13556,8 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13475
13556
  }
13476
13557
  codonRange = translateRange(
13477
13558
  {
13478
- start: index2 - 2,
13479
- end: index2
13559
+ start: index - 2,
13560
+ end: index
13480
13561
  },
13481
13562
  startOffset,
13482
13563
  originalSequenceStringLength
@@ -13514,7 +13595,7 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13514
13595
  aminoAcidIndex--;
13515
13596
  }
13516
13597
  }
13517
- let lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
13598
+ const lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
13518
13599
  codonRange = translateRange(
13519
13600
  {
13520
13601
  start: sequenceStringLength - lengthOfEndBpsNotCoveredByAminoAcids,
@@ -13604,10 +13685,10 @@ function tidyUpAnnotation(_annotation, {
13604
13685
  annotation.name = "Untitled annotation";
13605
13686
  }
13606
13687
  if (provideNewIdsForAnnotations) {
13607
- annotation.id = bsonObjectId().str;
13688
+ annotation.id = shortid$1();
13608
13689
  }
13609
13690
  if (!annotation.id && annotation.id !== 0 && !doNotProvideIdsForAnnotations) {
13610
- annotation.id = bsonObjectId().str;
13691
+ annotation.id = shortid$1();
13611
13692
  messages.push(
13612
13693
  "Unable to detect valid ID for annotation, setting ID to " + annotation.id
13613
13694
  );
@@ -13836,7 +13917,7 @@ function tidyUpSequenceData(pSeqData, options = {}) {
13836
13917
  if (item.id || item.id === 0) {
13837
13918
  itemId = item.id;
13838
13919
  } else {
13839
- itemId = bsonObjectId().str;
13920
+ itemId = shortid$1();
13840
13921
  if (!doNotProvideIdsForAnnotations) {
13841
13922
  item.id = itemId;
13842
13923
  }
@@ -13899,7 +13980,7 @@ const reverseSeqDiff = /* @__PURE__ */ __name((diff2) => {
13899
13980
  return reverse(diff2);
13900
13981
  }, "reverseSeqDiff");
13901
13982
  function getAllInsertionsInSeqReads(seqReads) {
13902
- let allInsertionsInSeqReads = [];
13983
+ const allInsertionsInSeqReads = [];
13903
13984
  seqReads.forEach((seqRead) => {
13904
13985
  const splitSeqRead = seqRead.cigar.match(/([0-9]*[MDI])/g);
13905
13986
  for (let componentI = 0; componentI < splitSeqRead.length; componentI++) {
@@ -13916,7 +13997,7 @@ function getAllInsertionsInSeqReads(seqReads) {
13916
13997
  bpPosOfInsertion += previousComponentNumber;
13917
13998
  }
13918
13999
  }
13919
- let insertionInfo = {
14000
+ const insertionInfo = {
13920
14001
  // keeping bpPos 1-based
13921
14002
  bpPos: bpPosOfInsertion,
13922
14003
  number: numberOfInsertions
@@ -13925,7 +14006,7 @@ function getAllInsertionsInSeqReads(seqReads) {
13925
14006
  }
13926
14007
  }
13927
14008
  });
13928
- let sortedInsertions = allInsertionsInSeqReads.sort((a, b) => {
14009
+ const sortedInsertions = allInsertionsInSeqReads.sort((a, b) => {
13929
14010
  return a.bpPos - b.bpPos;
13930
14011
  });
13931
14012
  for (let i = 0; i < sortedInsertions.length - 1; i++) {
@@ -14019,16 +14100,16 @@ function getVirtualDigest({
14019
14100
  const sortedCutsites = cutsites.sort((a, b) => {
14020
14101
  return a.topSnipPosition - b.topSnipPosition;
14021
14102
  });
14022
- sortedCutsites.forEach((cutsite1, index2) => {
14103
+ sortedCutsites.forEach((cutsite1, index) => {
14023
14104
  if (computePartialDigest && !computePartialDigestDisabled) {
14024
- sortedCutsites.forEach((cs, index22) => {
14025
- pairs.push([cutsite1, sortedCutsites[index22]]);
14105
+ sortedCutsites.forEach((cs, index2) => {
14106
+ pairs.push([cutsite1, sortedCutsites[index2]]);
14026
14107
  });
14027
14108
  }
14028
14109
  if (!computeDigestDisabled) {
14029
14110
  pairs.push([
14030
14111
  cutsite1,
14031
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
14112
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
14032
14113
  ]);
14033
14114
  }
14034
14115
  });
@@ -14117,7 +14198,7 @@ function isEnzymeType2S(e) {
14117
14198
  }
14118
14199
  __name(isEnzymeType2S, "isEnzymeType2S");
14119
14200
  function insertGapsIntoRefSeq(refSeq, seqReads) {
14120
- let refSeqWithGaps = refSeq.split("");
14201
+ const refSeqWithGaps = refSeq.split("");
14121
14202
  const allInsertionsInSeqReads = getAllInsertionsInSeqReads(seqReads);
14122
14203
  for (let i = 0; i < allInsertionsInSeqReads.length; i++) {
14123
14204
  const bpPosOfInsertion = allInsertionsInSeqReads[i].bpPos;
@@ -14134,8 +14215,8 @@ function insertGapsIntoRefSeq(refSeq, seqReads) {
14134
14215
  return refSeqWithGaps.join("");
14135
14216
  }
14136
14217
  __name(insertGapsIntoRefSeq, "insertGapsIntoRefSeq");
14137
- var spliceString = /* @__PURE__ */ __name(function spliceSlice(str, index2, count, add) {
14138
- return str.slice(0, index2) + (add || "") + str.slice(index2 + count);
14218
+ var spliceString = /* @__PURE__ */ __name(function spliceSlice(str, index, count, add) {
14219
+ return str.slice(0, index) + (add || "") + str.slice(index + count);
14139
14220
  }, "spliceSlice");
14140
14221
  const spliceString$1 = /* @__PURE__ */ getDefaultExportFromCjs(spliceString);
14141
14222
  function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOrRange) {
@@ -14148,7 +14229,7 @@ function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOr
14148
14229
  invertRange(caretPositionOrRange, bpString.length)
14149
14230
  );
14150
14231
  stringToReturn = "";
14151
- ranges.forEach((range, index2) => {
14232
+ ranges.forEach((range, index) => {
14152
14233
  stringToReturn += getSequenceWithinRange(range, bpString);
14153
14234
  if (ranges.length === 1) {
14154
14235
  if (isPositionWithinRange(0, range, bpString.length, true, true)) {
@@ -14157,7 +14238,7 @@ function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOr
14157
14238
  stringToReturn = insertString + stringToReturn;
14158
14239
  }
14159
14240
  } else {
14160
- if (index2 === 0)
14241
+ if (index === 0)
14161
14242
  stringToReturn += insertString;
14162
14243
  }
14163
14244
  });
@@ -14506,7 +14587,7 @@ function insertSequenceDataAtPositionOrRange(_sequenceDataToInsert, _existingSeq
14506
14587
  _sequenceDataToInsert,
14507
14588
  options
14508
14589
  );
14509
- let newSequenceData = lodashExports.cloneDeep(existingSequenceData);
14590
+ const newSequenceData = lodashExports.cloneDeep(existingSequenceData);
14510
14591
  const insertLength = sequenceDataToInsert.proteinSequence ? sequenceDataToInsert.proteinSequence.length * 3 : sequenceDataToInsert.sequence.length;
14511
14592
  let caretPosition = caretPositionOrRange;
14512
14593
  const isInsertSameLengthAsSelection = sequenceDataToInsert.sequence.length === getRangeLength(caretPositionOrRange, existingSequenceData.sequence.length);
@@ -14648,9 +14729,9 @@ function insertIntoChromatogram({
14648
14729
  if (justBaseCalls) {
14649
14730
  return chromatogramData;
14650
14731
  }
14651
- let baseTracesToInsert = [];
14652
- let qualNumsToInsert = [];
14653
- for (let index2 = 0; index2 < seqToInsert.length; index2++) {
14732
+ const baseTracesToInsert = [];
14733
+ const qualNumsToInsert = [];
14734
+ for (let index = 0; index < seqToInsert.length; index++) {
14654
14735
  qualNumsToInsert.push(0);
14655
14736
  const toPush = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0];
14656
14737
  baseTracesToInsert.push({
@@ -22328,7 +22409,7 @@ function generateAnnotation(start, end, maxLength) {
22328
22409
  return __spreadProps(__spreadValues({}, range), {
22329
22410
  name: getRandomInt(0, 1e5).toString(),
22330
22411
  type: "misc_feature",
22331
- id: bsonObjectId().str,
22412
+ id: shortid$1(),
22332
22413
  forward: Math.random() > 0.5,
22333
22414
  notes: {}
22334
22415
  });
@@ -22394,7 +22475,7 @@ function findNearestRangeOfSequenceOverlapToPosition(sequenceToSearch, overlapSe
22394
22475
  }
22395
22476
  const regex = new RegExp(overlapSequence, "ig");
22396
22477
  let result;
22397
- let index2;
22478
+ let index;
22398
22479
  let distance = Infinity;
22399
22480
  while (result = regex.exec(sequenceToSearch + (isLinear ? "" : sequenceToSearch))) {
22400
22481
  if (result.index > sequenceToSearch.length)
@@ -22404,13 +22485,13 @@ function findNearestRangeOfSequenceOverlapToPosition(sequenceToSearch, overlapSe
22404
22485
  if (newDistance > distance) {
22405
22486
  break;
22406
22487
  }
22407
- index2 = result.index;
22488
+ index = result.index;
22408
22489
  distance = newDistance;
22409
22490
  }
22410
22491
  return normalizeRange(
22411
22492
  {
22412
- start: index2,
22413
- end: index2 + overlapSequence.length - 1
22493
+ start: index,
22494
+ end: index + overlapSequence.length - 1
22414
22495
  },
22415
22496
  sequenceToSearch.length
22416
22497
  );
@@ -22453,13 +22534,13 @@ function getOrfsFromSequence(options) {
22453
22534
  forward,
22454
22535
  annotationTypePlural: "orfs",
22455
22536
  isOrf: true,
22456
- id: bsonObjectId().str
22537
+ id: shortid$1()
22457
22538
  });
22458
22539
  }
22459
22540
  }
22460
22541
  }
22461
22542
  const orfEnds = {};
22462
- orfRanges.forEach((orf, index2) => {
22543
+ orfRanges.forEach((orf, index) => {
22463
22544
  const indexOfAlreadyExistingOrf = orfEnds[orf.end];
22464
22545
  if (typeof indexOfAlreadyExistingOrf !== "undefined") {
22465
22546
  let internalOrf = orf;
@@ -22467,7 +22548,7 @@ function getOrfsFromSequence(options) {
22467
22548
  if (containingOrf.length < internalOrf.length) {
22468
22549
  internalOrf = orfRanges[indexOfAlreadyExistingOrf];
22469
22550
  containingOrf = orf;
22470
- orfEnds[orf.end] = index2;
22551
+ orfEnds[orf.end] = index;
22471
22552
  }
22472
22553
  const internalStartCodonIndex = forward ? internalOrf.start : originalSequenceLength - internalOrf.start - 1;
22473
22554
  containingOrf.internalStartCodonIndices = [
@@ -22477,7 +22558,7 @@ function getOrfsFromSequence(options) {
22477
22558
  ];
22478
22559
  internalOrf.remove = true;
22479
22560
  } else {
22480
- orfEnds[orf.end] = index2;
22561
+ orfEnds[orf.end] = index;
22481
22562
  if (!forward) {
22482
22563
  const endHolder = orf.end;
22483
22564
  orf.end = originalSequenceLength - orf.start - 1;
@@ -22512,14 +22593,13 @@ function findOrfsInPlasmid(sequence, circular, minimumOrfSize, useAdditionalOrfS
22512
22593
  return forwardOrfs.concat(reverseOrfs);
22513
22594
  }
22514
22595
  __name(findOrfsInPlasmid, "findOrfsInPlasmid");
22515
- var matchOperatorsRe = /[|\\{}()[\]^$+*?.]/g;
22516
- var escapeStringRegexp = /* @__PURE__ */ __name(function(str) {
22517
- if (typeof str !== "string") {
22596
+ function escapeStringRegexp(string) {
22597
+ if (typeof string !== "string") {
22518
22598
  throw new TypeError("Expected a string");
22519
22599
  }
22520
- return str.replace(matchOperatorsRe, "\\$&");
22521
- }, "escapeStringRegexp");
22522
- const escapeStringRegexp$1 = /* @__PURE__ */ getDefaultExportFromCjs(escapeStringRegexp);
22600
+ return string.replace(/[|\\{}()[\]^$+*?.]/g, "\\$&").replace(/-/g, "\\x2d");
22601
+ }
22602
+ __name(escapeStringRegexp, "escapeStringRegexp");
22523
22603
  function getAminoAcidStringFromSequenceString(sequenceString) {
22524
22604
  const aminoAcidsPerBase = getAminoAcidDataForEachBaseOfDna(
22525
22605
  sequenceString,
@@ -22542,8 +22622,7 @@ function findSequenceMatches(sequence, searchString, options = {}) {
22542
22622
  const { searchReverseStrand } = options;
22543
22623
  if (searchReverseStrand) {
22544
22624
  const sequenceLength = sequence.length;
22545
- let reverseSeq;
22546
- reverseSeq = getReverseComplementSequenceString(sequence);
22625
+ const reverseSeq = getReverseComplementSequenceString(sequence);
22547
22626
  const reverseMatches = findSequenceMatchesTopStrand(
22548
22627
  reverseSeq,
22549
22628
  searchString,
@@ -22570,7 +22649,7 @@ function findSequenceMatchesTopStrand(sequence, searchString, options = {}) {
22570
22649
  isProteinSequence,
22571
22650
  isProteinSearch
22572
22651
  } = options;
22573
- let searchStringToUse = escapeStringRegexp$1(searchString);
22652
+ let searchStringToUse = escapeStringRegexp(searchString);
22574
22653
  if (isAmbiguous) {
22575
22654
  if (isProteinSearch || isProteinSequence) {
22576
22655
  searchStringToUse = convertAmbiguousStringToRegex(
@@ -22608,7 +22687,7 @@ function findSequenceMatchesTopStrand(sequence, searchString, options = {}) {
22608
22687
  }
22609
22688
  ];
22610
22689
  }
22611
- let ranges = [];
22690
+ const ranges = [];
22612
22691
  sequencesToCheck.forEach(({ seqToCheck, offset }) => {
22613
22692
  const reg = new RegExp(searchStringToUse, "ig");
22614
22693
  let match;
@@ -22853,7 +22932,7 @@ function getInsertBetweenVals(caretPosition, selectionLayer, sequenceLength) {
22853
22932
  }
22854
22933
  __name(getInsertBetweenVals, "getInsertBetweenVals");
22855
22934
  function getLeftAndRightOfSequenceInRangeGivenPosition(range, position, sequence) {
22856
- let result = {
22935
+ const result = {
22857
22936
  leftHandSide: "",
22858
22937
  rightHandSide: ""
22859
22938
  };
@@ -22879,15 +22958,15 @@ function getLeftAndRightOfSequenceInRangeGivenPosition(range, position, sequence
22879
22958
  return result;
22880
22959
  }
22881
22960
  __name(getLeftAndRightOfSequenceInRangeGivenPosition, "getLeftAndRightOfSequenceInRangeGivenPosition");
22882
- function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn, options) {
22961
+ function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn) {
22883
22962
  sequenceToSearchIn = sequenceToSearchIn.toLowerCase();
22884
22963
  sequenceToFind = sequenceToFind.toLowerCase();
22885
22964
  const lengthenedSeqToSearch = sequenceToSearchIn + sequenceToSearchIn;
22886
- const index2 = lengthenedSeqToSearch.indexOf(sequenceToFind);
22887
- if (index2 > -1) {
22965
+ const index = lengthenedSeqToSearch.indexOf(sequenceToFind);
22966
+ if (index > -1) {
22888
22967
  return {
22889
- start: index2,
22890
- end: modulatePositionByRange(index2 + sequenceToFind.length - 1, {
22968
+ start: index,
22969
+ end: modulatePositionByRange(index + sequenceToFind.length - 1, {
22891
22970
  start: 0,
22892
22971
  end: sequenceToSearchIn.length - 1
22893
22972
  })
@@ -22899,15 +22978,15 @@ function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn, optio
22899
22978
  __name(getOverlapBetweenTwoSequences, "getOverlapBetweenTwoSequences");
22900
22979
  function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22901
22980
  restrictionEnzymes = restrictionEnzymes.length ? restrictionEnzymes : [restrictionEnzymes];
22902
- let bps = seqData.sequence;
22903
- let seqLen = bps.length;
22904
- let circular = seqData.circular;
22981
+ const bps = seqData.sequence;
22982
+ const seqLen = bps.length;
22983
+ const circular = seqData.circular;
22905
22984
  let cutsites = [];
22906
22985
  restrictionEnzymes.forEach((enzyme) => {
22907
- let newCutsites = cutSequenceByRestrictionEnzyme(bps, circular, enzyme);
22986
+ const newCutsites = cutSequenceByRestrictionEnzyme(bps, circular, enzyme);
22908
22987
  cutsites = cutsites.concat(newCutsites);
22909
22988
  });
22910
- let parts = [];
22989
+ const parts = [];
22911
22990
  if (cutsites.length < 1) {
22912
22991
  return parts;
22913
22992
  } else if (cutsites.length === 1) {
@@ -22920,16 +22999,16 @@ function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22920
22999
  );
22921
23000
  return parts;
22922
23001
  } else {
22923
- let pairs = pairwise(cutsites);
23002
+ const pairs = pairwise(cutsites);
22924
23003
  pairs.forEach((pair) => {
22925
- let cut1 = pair[0];
22926
- let cut2 = pair[1];
22927
- let part1 = getPartBetweenEnzymesWithInclusiveOverhangs(
23004
+ const cut1 = pair[0];
23005
+ const cut2 = pair[1];
23006
+ const part1 = getPartBetweenEnzymesWithInclusiveOverhangs(
22928
23007
  cut1,
22929
23008
  cut2,
22930
23009
  seqLen
22931
23010
  );
22932
- let part2 = getPartBetweenEnzymesWithInclusiveOverhangs(
23011
+ const part2 = getPartBetweenEnzymesWithInclusiveOverhangs(
22933
23012
  cut2,
22934
23013
  cut1,
22935
23014
  seqLen
@@ -22946,10 +23025,10 @@ function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22946
23025
  }
22947
23026
  __name(getPossiblePartsFromSequenceAndEnzyme, "getPossiblePartsFromSequenceAndEnzyme");
22948
23027
  function getPartBetweenEnzymesWithInclusiveOverhangs(cut1, cut2, seqLen) {
22949
- let firstCutOffset = getEnzymeRelativeOffset(cut1.restrictionEnzyme);
22950
- let secondCutOffset = getEnzymeRelativeOffset(cut2.restrictionEnzyme);
22951
- let start = cut1.topSnipBeforeBottom ? cut1.topSnipPosition : cut1.bottomSnipPosition;
22952
- let end = normalizePositionByRangeLength(
23028
+ const firstCutOffset = getEnzymeRelativeOffset(cut1.restrictionEnzyme);
23029
+ const secondCutOffset = getEnzymeRelativeOffset(cut2.restrictionEnzyme);
23030
+ const start = cut1.topSnipBeforeBottom ? cut1.topSnipPosition : cut1.bottomSnipPosition;
23031
+ const end = normalizePositionByRangeLength(
22953
23032
  (cut2.topSnipBeforeBottom ? cut2.bottomSnipPosition : cut2.topSnipPosition) - 1,
22954
23033
  seqLen
22955
23034
  );
@@ -22981,7 +23060,7 @@ function pairwise(list) {
22981
23060
  if (list.length < 2) {
22982
23061
  return [];
22983
23062
  }
22984
- let first = list[0], rest = list.slice(1), pairs = rest.map((x) => {
23063
+ const first = list[0], rest = list.slice(1), pairs = rest.map((x) => {
22985
23064
  return [first, x];
22986
23065
  });
22987
23066
  return pairs.concat(pairwise(rest));
@@ -23065,8 +23144,8 @@ function guessIfSequenceIsDnaAndNotProtein(seq, options = {}) {
23065
23144
  let count = 0;
23066
23145
  if (!seq || !seq.length)
23067
23146
  return true;
23068
- for (let index2 = 0; index2 < seq.length; index2++) {
23069
- const letter = seq[index2];
23147
+ for (let index = 0; index < seq.length; index++) {
23148
+ const letter = seq[index];
23070
23149
  if (dnaLetterMap[letter.toUpperCase()]) {
23071
23150
  count = count + 1;
23072
23151
  }
@@ -23137,7 +23216,6 @@ function mapAnnotationsToRows(annotations, sequenceLength, bpsPerRow, { splitFor
23137
23216
  }
23138
23217
  __name(mapAnnotationsToRows, "mapAnnotationsToRows");
23139
23218
  function mapAnnotationToRows({
23140
- wrappedAnnotations,
23141
23219
  annotation,
23142
23220
  sequenceLength,
23143
23221
  bpsPerRow,
@@ -23151,7 +23229,7 @@ function mapAnnotationToRows({
23151
23229
  location || annotation,
23152
23230
  sequenceLength
23153
23231
  );
23154
- ranges.forEach((range, index2) => {
23232
+ ranges.forEach((range, index) => {
23155
23233
  const startingRow = Math.floor(range.start / bpsPerRow);
23156
23234
  const endingRow = Math.floor(range.end / bpsPerRow);
23157
23235
  for (let rowNumber = startingRow; rowNumber <= endingRow; rowNumber++) {
@@ -23181,7 +23259,7 @@ function mapAnnotationToRows({
23181
23259
  }
23182
23260
  });
23183
23261
  } else {
23184
- if (index2 > 0 && //second half of an annotation range
23262
+ if (index > 0 && //second half of an annotation range
23185
23263
  annotationsForRow.length && //there are already annotations within the row
23186
23264
  annotationsForRow[annotationsForRow.length - 1].annotation === annotation) {
23187
23265
  yOffset = annotationsForRow[annotationsForRow.length - 1].yOffset;
@@ -23257,7 +23335,7 @@ function prepareRowData(sequenceData, bpsPerRow) {
23257
23335
  }
23258
23336
  __name(prepareRowData, "prepareRowData");
23259
23337
  function condensePairwiseAlignmentDifferences(referenceSeq, alignedSeq) {
23260
- let overviewMinimapTrack = [];
23338
+ const overviewMinimapTrack = [];
23261
23339
  const referenceSeqSplit = referenceSeq.toLowerCase().split("");
23262
23340
  const alignedSeqSplit = alignedSeq.toLowerCase().split("");
23263
23341
  const seqLength = alignedSeq.length;
@@ -23437,7 +23515,7 @@ function addGapsToSeqReads(refSeq, seqReads) {
23437
23515
  return a.bpPos - b.bpPos;
23438
23516
  });
23439
23517
  otherInsertions = otherInsertions.filter(
23440
- (object, index2) => index2 === otherInsertions.findIndex(
23518
+ (object, index) => index === otherInsertions.findIndex(
23441
23519
  (obj) => JSON.stringify(obj) === JSON.stringify(object)
23442
23520
  )
23443
23521
  );
@@ -23756,21 +23834,21 @@ function getDigestFragmentsForCutsites(sequenceLength, circular, cutsites, opts
23756
23834
  }
23757
23835
  ];
23758
23836
  }
23759
- sortedCutsites.forEach((cutsite1, index2) => {
23760
- if (!circular && !sortedCutsites[index2 + 1]) {
23837
+ sortedCutsites.forEach((cutsite1, index) => {
23838
+ if (!circular && !sortedCutsites[index + 1]) {
23761
23839
  return;
23762
23840
  }
23763
23841
  if (opts.computePartialDigests) {
23764
- sortedCutsites.forEach((cs, index22) => {
23765
- if (index22 === index2 + 1 || index22 === 0) {
23842
+ sortedCutsites.forEach((cs, index2) => {
23843
+ if (index2 === index + 1 || index2 === 0) {
23766
23844
  return;
23767
23845
  }
23768
- pairs.push([cutsite1, sortedCutsites[index22]]);
23846
+ pairs.push([cutsite1, sortedCutsites[index2]]);
23769
23847
  });
23770
23848
  }
23771
23849
  pairs.push([
23772
23850
  cutsite1,
23773
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
23851
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
23774
23852
  ]);
23775
23853
  });
23776
23854
  pairs.forEach(([cut1, cut2]) => {