@teselagen/range-utils 0.1.21 → 0.1.22
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.js +6542 -18010
- package/index.mjs +6593 -18007
- package/index.umd.js +6836 -18306
- package/package.json +1 -1
- package/src/adjustRangeToDeletionOfAnotherRange.js +53 -0
- package/src/adjustRangeToDeletionOfAnotherRange.test.js +107 -0
- package/src/adjustRangeToInsert.js +28 -0
- package/src/adjustRangeToInsert.test.js +111 -0
- package/src/adjustRangeToRotation.js +24 -0
- package/src/adjustRangeToRotation.test.js +123 -0
- package/src/checkIfNonCircularRangesOverlap.js +30 -0
- package/src/checkIfNonCircularRangesOverlap.test.js +45 -0
- package/src/checkIfPotentiallyCircularRangesOverlap.js +16 -0
- package/src/checkIfPotentiallyCircularRangesOverlap.test.js +73 -0
- package/src/collapseOverlapsGeneratedFromRangeComparisonIfPossible.js +47 -0
- package/src/collapseOverlapsGeneratedFromRangeComparisonIfPossible.test.js +124 -0
- package/src/convertRangeIndices.js +22 -0
- package/src/convertRangeIndices.test.js +22 -0
- package/src/convertRangeTo0Based.js +5 -0
- package/src/convertRangeTo1Based.js +5 -0
- package/src/doesRangeSpanEntireSequence.js +7 -0
- package/src/doesRangeSpanOrigin.js +3 -0
- package/src/expandOrContractCircularRangeToPosition.js +41 -0
- package/src/expandOrContractNonCircularRangeToPosition.js +25 -0
- package/src/expandOrContractRangeByLength.js +12 -0
- package/src/expandOrContractRangeByLength.test.js +77 -0
- package/src/expandOrContractRangeToPosition.js +10 -0
- package/src/flipContainedRange.js +85 -0
- package/src/flipContainedRange.test.js +124 -0
- package/src/generateRandomRange.js +20 -0
- package/src/generateRandomRange.test.js +24 -0
- package/src/getAnnotationRangeType.js +24 -0
- package/src/getAnnotationRangeType.test.js +59 -0
- package/src/getEachPositionInRangeAsArray.js +15 -0
- package/src/getEachPositionInRangeAsArray.test.js +9 -0
- package/src/getLengthOfOverlappingRegionsBetweenTwoRanges.js +9 -0
- package/src/getLengthOfOverlappingRegionsBetweenTwoRanges.test.js +24 -0
- package/src/getMiddleOfRange.js +10 -0
- package/src/getMiddleOfRange.test.js +44 -0
- package/src/getOverlapOfNonCircularRanges.js +35 -0
- package/src/getOverlapsOfPotentiallyCircularRanges.js +54 -0
- package/src/getOverlapsOfPotentiallyCircularRanges.test.js +199 -0
- package/src/getPositionFromAngle.js +7 -0
- package/src/getRangeAngles.js +33 -0
- package/src/getRangeAngles.test.js +77 -0
- package/src/getRangeLength.js +14 -0
- package/src/getRangeLength.test.js +30 -0
- package/src/getRangesBetweenTwoRanges.js +28 -0
- package/src/getSequenceWithinRange.js +17 -0
- package/src/getSequenceWithinRange.test.js +49 -0
- package/src/getShortestDistanceBetweenTwoPositions.js +12 -0
- package/src/getShortestDistanceBetweenTwoPositions.test.js +14 -0
- package/src/getYOffsetForPotentiallyCircularRange.js +24 -0
- package/src/getYOffsetsForPotentiallyCircularRanges.js +20 -0
- package/src/getYOffsetsForPotentiallyCircularRanges.test.js +29 -0
- package/src/getZeroedRangeOverlaps.js +17 -0
- package/src/getZeroedRangeOverlaps.test.js +36 -0
- package/src/index.js +51 -0
- package/src/index.test.js +33 -0
- package/src/invertRange.js +21 -0
- package/src/invertRange.test.js +96 -0
- package/src/isPositionCloserToRangeStartThanRangeEnd.js +8 -0
- package/src/isPositionCloserToRangeStartThanRangeEnd.test.js +17 -0
- package/src/isPositionWithinRange.js +31 -0
- package/src/isRangeOrPositionWithinRange.js +29 -0
- package/src/isRangeOrPositionWithinRange.test.js +150 -0
- package/src/isRangeWithinRange.js +17 -0
- package/src/loopEachPositionInRange.js +5 -0
- package/src/modulatePositionByRange.js +10 -0
- package/src/modulatePositionByRange.test.js +12 -0
- package/src/modulateRangeBySequenceLength.js +11 -0
- package/src/modulateRangeBySequenceLength.test.js +16 -0
- package/src/normalizePositionByRangeLength.js +20 -0
- package/src/normalizePositionByRangeLength.test.js +23 -0
- package/src/normalizePositionByRangeLength1Based.js +5 -0
- package/src/normalizePositionByRangeLength1Based.test.js +9 -0
- package/src/normalizeRange.js +11 -0
- package/src/normalizeRange.test.js +9 -0
- package/src/provideInclusiveOptions.js +26 -0
- package/src/reversePositionInRange.js +13 -0
- package/src/splitRangeIntoTwoPartsIfItIsCircular.js +31 -0
- package/src/splitRangeIntoTwoPartsIfItIsCircular.test.js +33 -0
- package/src/translateRange.js +9 -0
- package/src/translateRange.test.js +20 -0
- package/src/trimNonCicularRangeByAnotherNonCircularRange.js +57 -0
- package/src/trimNumberToFitWithin0ToAnotherNumber.js +12 -0
- package/src/trimRangeByAnotherRange.js +102 -0
- package/src/trimRangeByAnotherRange.test.js +314 -0
- package/src/zeroSubrangeByContainerRange.js +36 -0
- package/src/zeroSubrangeByContainerRange.test.js +51 -0
|
@@ -0,0 +1,314 @@
|
|
|
1
|
+
import trimRangeByAnotherRange from "./trimRangeByAnotherRange.js";
|
|
2
|
+
import assert from "assert";
|
|
3
|
+
|
|
4
|
+
describe("trimRangeByAnotherRange", function() {
|
|
5
|
+
it(`returns nothing if invalid inputs are sent in`, () => {
|
|
6
|
+
assert.equal(
|
|
7
|
+
null,
|
|
8
|
+
trimRangeByAnotherRange(
|
|
9
|
+
null,
|
|
10
|
+
{
|
|
11
|
+
start: 2,
|
|
12
|
+
end: 2
|
|
13
|
+
},
|
|
14
|
+
10
|
|
15
|
+
)
|
|
16
|
+
);
|
|
17
|
+
});
|
|
18
|
+
it("trims non circular ranges that dont fully overlap", function() {
|
|
19
|
+
assert.deepEqual(
|
|
20
|
+
trimRangeByAnotherRange(
|
|
21
|
+
{
|
|
22
|
+
start: 0,
|
|
23
|
+
end: 2,
|
|
24
|
+
name: "happy"
|
|
25
|
+
},
|
|
26
|
+
{
|
|
27
|
+
start: 2,
|
|
28
|
+
end: 2
|
|
29
|
+
},
|
|
30
|
+
10
|
|
31
|
+
),
|
|
32
|
+
{
|
|
33
|
+
start: 0,
|
|
34
|
+
end: 1,
|
|
35
|
+
name: "happy"
|
|
36
|
+
}
|
|
37
|
+
);
|
|
38
|
+
});
|
|
39
|
+
it("it does not trim non circular ranges with overlap contained within it", function() {
|
|
40
|
+
assert.deepEqual(
|
|
41
|
+
trimRangeByAnotherRange(
|
|
42
|
+
{
|
|
43
|
+
start: 0,
|
|
44
|
+
end: 10,
|
|
45
|
+
name: "happy"
|
|
46
|
+
},
|
|
47
|
+
{
|
|
48
|
+
start: 2,
|
|
49
|
+
end: 2
|
|
50
|
+
},
|
|
51
|
+
10
|
|
52
|
+
),
|
|
53
|
+
{
|
|
54
|
+
start: 0,
|
|
55
|
+
end: 10,
|
|
56
|
+
name: "happy"
|
|
57
|
+
}
|
|
58
|
+
);
|
|
59
|
+
});
|
|
60
|
+
it("trims non circular ranges that fully overlap", function() {
|
|
61
|
+
assert.deepEqual(
|
|
62
|
+
trimRangeByAnotherRange(
|
|
63
|
+
{
|
|
64
|
+
start: 0,
|
|
65
|
+
end: 2
|
|
66
|
+
},
|
|
67
|
+
{
|
|
68
|
+
start: 0,
|
|
69
|
+
end: 2
|
|
70
|
+
},
|
|
71
|
+
10
|
|
72
|
+
),
|
|
73
|
+
undefined
|
|
74
|
+
);
|
|
75
|
+
assert.deepEqual(
|
|
76
|
+
trimRangeByAnotherRange(
|
|
77
|
+
{
|
|
78
|
+
start: 3,
|
|
79
|
+
end: 5
|
|
80
|
+
},
|
|
81
|
+
{
|
|
82
|
+
start: 3,
|
|
83
|
+
end: 5
|
|
84
|
+
},
|
|
85
|
+
10
|
|
86
|
+
),
|
|
87
|
+
undefined
|
|
88
|
+
);
|
|
89
|
+
assert.deepEqual(
|
|
90
|
+
trimRangeByAnotherRange(
|
|
91
|
+
{
|
|
92
|
+
start: 3,
|
|
93
|
+
end: 3
|
|
94
|
+
},
|
|
95
|
+
{
|
|
96
|
+
start: 3,
|
|
97
|
+
end: 3
|
|
98
|
+
},
|
|
99
|
+
10
|
|
100
|
+
),
|
|
101
|
+
undefined
|
|
102
|
+
);
|
|
103
|
+
assert.deepEqual(
|
|
104
|
+
trimRangeByAnotherRange(
|
|
105
|
+
{
|
|
106
|
+
start: 0,
|
|
107
|
+
end: 0
|
|
108
|
+
},
|
|
109
|
+
{
|
|
110
|
+
start: 0,
|
|
111
|
+
end: 3
|
|
112
|
+
},
|
|
113
|
+
10
|
|
114
|
+
),
|
|
115
|
+
undefined
|
|
116
|
+
);
|
|
117
|
+
});
|
|
118
|
+
it("does not trim non circular ranges that dont overlap", function() {
|
|
119
|
+
assert.deepEqual(
|
|
120
|
+
trimRangeByAnotherRange(
|
|
121
|
+
{
|
|
122
|
+
start: 0,
|
|
123
|
+
end: 2
|
|
124
|
+
},
|
|
125
|
+
{
|
|
126
|
+
start: 5,
|
|
127
|
+
end: 6
|
|
128
|
+
},
|
|
129
|
+
10
|
|
130
|
+
),
|
|
131
|
+
{
|
|
132
|
+
start: 0,
|
|
133
|
+
end: 2
|
|
134
|
+
}
|
|
135
|
+
);
|
|
136
|
+
assert.deepEqual(
|
|
137
|
+
trimRangeByAnotherRange(
|
|
138
|
+
{
|
|
139
|
+
start: 3,
|
|
140
|
+
end: 5,
|
|
141
|
+
name: "happy"
|
|
142
|
+
},
|
|
143
|
+
{
|
|
144
|
+
start: 0,
|
|
145
|
+
end: 0
|
|
146
|
+
},
|
|
147
|
+
10
|
|
148
|
+
),
|
|
149
|
+
{
|
|
150
|
+
start: 3,
|
|
151
|
+
name: "happy",
|
|
152
|
+
end: 5
|
|
153
|
+
}
|
|
154
|
+
);
|
|
155
|
+
});
|
|
156
|
+
it("does trim circular ranges that overlap", function() {
|
|
157
|
+
assert.deepEqual(
|
|
158
|
+
trimRangeByAnotherRange(
|
|
159
|
+
{
|
|
160
|
+
start: 3,
|
|
161
|
+
name: "happy",
|
|
162
|
+
end: 2
|
|
163
|
+
},
|
|
164
|
+
{
|
|
165
|
+
start: 5,
|
|
166
|
+
end: 6
|
|
167
|
+
},
|
|
168
|
+
10
|
|
169
|
+
),
|
|
170
|
+
{
|
|
171
|
+
start: 3,
|
|
172
|
+
name: "happy",
|
|
173
|
+
end: 2
|
|
174
|
+
}
|
|
175
|
+
);
|
|
176
|
+
assert.deepEqual(
|
|
177
|
+
trimRangeByAnotherRange(
|
|
178
|
+
{
|
|
179
|
+
start: 3,
|
|
180
|
+
end: 2
|
|
181
|
+
},
|
|
182
|
+
{
|
|
183
|
+
start: 3,
|
|
184
|
+
end: 6
|
|
185
|
+
},
|
|
186
|
+
10
|
|
187
|
+
),
|
|
188
|
+
{
|
|
189
|
+
start: 7,
|
|
190
|
+
end: 2
|
|
191
|
+
}
|
|
192
|
+
);
|
|
193
|
+
assert.deepEqual(
|
|
194
|
+
trimRangeByAnotherRange(
|
|
195
|
+
{
|
|
196
|
+
start: 3,
|
|
197
|
+
end: 2
|
|
198
|
+
},
|
|
199
|
+
{
|
|
200
|
+
start: 1,
|
|
201
|
+
end: 6
|
|
202
|
+
},
|
|
203
|
+
10
|
|
204
|
+
),
|
|
205
|
+
{
|
|
206
|
+
start: 7,
|
|
207
|
+
end: 0
|
|
208
|
+
}
|
|
209
|
+
);
|
|
210
|
+
assert.deepEqual(
|
|
211
|
+
trimRangeByAnotherRange(
|
|
212
|
+
{
|
|
213
|
+
start: 3,
|
|
214
|
+
end: 2
|
|
215
|
+
},
|
|
216
|
+
{
|
|
217
|
+
start: 0,
|
|
218
|
+
end: 6
|
|
219
|
+
},
|
|
220
|
+
10
|
|
221
|
+
),
|
|
222
|
+
{
|
|
223
|
+
start: 7,
|
|
224
|
+
end: 9
|
|
225
|
+
}
|
|
226
|
+
);
|
|
227
|
+
assert.deepEqual(
|
|
228
|
+
trimRangeByAnotherRange(
|
|
229
|
+
{
|
|
230
|
+
start: 3,
|
|
231
|
+
end: 2
|
|
232
|
+
},
|
|
233
|
+
{
|
|
234
|
+
start: 2,
|
|
235
|
+
end: 9
|
|
236
|
+
},
|
|
237
|
+
10
|
|
238
|
+
),
|
|
239
|
+
{
|
|
240
|
+
start: 0,
|
|
241
|
+
end: 1
|
|
242
|
+
}
|
|
243
|
+
);
|
|
244
|
+
assert.deepEqual(
|
|
245
|
+
trimRangeByAnotherRange(
|
|
246
|
+
{
|
|
247
|
+
start: 3,
|
|
248
|
+
end: 2
|
|
249
|
+
},
|
|
250
|
+
// rrrrrrrrrr
|
|
251
|
+
// 0123456789
|
|
252
|
+
// --es------
|
|
253
|
+
// --e s-----
|
|
254
|
+
{
|
|
255
|
+
start: 4,
|
|
256
|
+
end: 2
|
|
257
|
+
},
|
|
258
|
+
10
|
|
259
|
+
),
|
|
260
|
+
{
|
|
261
|
+
start: 3,
|
|
262
|
+
end: 3
|
|
263
|
+
}
|
|
264
|
+
);
|
|
265
|
+
assert.deepEqual(
|
|
266
|
+
trimRangeByAnotherRange(
|
|
267
|
+
{
|
|
268
|
+
start: 1,
|
|
269
|
+
end: 2
|
|
270
|
+
},
|
|
271
|
+
{
|
|
272
|
+
start: 4,
|
|
273
|
+
end: 1
|
|
274
|
+
},
|
|
275
|
+
10
|
|
276
|
+
),
|
|
277
|
+
{
|
|
278
|
+
start: 2,
|
|
279
|
+
end: 2
|
|
280
|
+
}
|
|
281
|
+
);
|
|
282
|
+
assert.deepEqual(
|
|
283
|
+
trimRangeByAnotherRange(
|
|
284
|
+
{
|
|
285
|
+
start: 1,
|
|
286
|
+
end: 5
|
|
287
|
+
},
|
|
288
|
+
{
|
|
289
|
+
start: 4,
|
|
290
|
+
end: 1
|
|
291
|
+
},
|
|
292
|
+
10
|
|
293
|
+
),
|
|
294
|
+
{
|
|
295
|
+
start: 2,
|
|
296
|
+
end: 3
|
|
297
|
+
}
|
|
298
|
+
);
|
|
299
|
+
assert.deepEqual(
|
|
300
|
+
trimRangeByAnotherRange(
|
|
301
|
+
{
|
|
302
|
+
start: 3,
|
|
303
|
+
end: 2
|
|
304
|
+
},
|
|
305
|
+
{
|
|
306
|
+
start: 3,
|
|
307
|
+
end: 2
|
|
308
|
+
},
|
|
309
|
+
10
|
|
310
|
+
),
|
|
311
|
+
undefined
|
|
312
|
+
);
|
|
313
|
+
});
|
|
314
|
+
});
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
//
|
|
2
|
+
// ac.throw([ac.posInt, ac.posInt, ac.bool], arguments);
|
|
3
|
+
import trimRangeByAnotherRange from './trimRangeByAnotherRange';
|
|
4
|
+
|
|
5
|
+
/**
|
|
6
|
+
* "zeroes" a subrange of a container range by
|
|
7
|
+
* adjusting subRange start and end such that it is as if the container range start = 0.
|
|
8
|
+
* @param {object} subRange {start:
|
|
9
|
+
* end:
|
|
10
|
+
* }
|
|
11
|
+
* @param {object} containerRange {start:
|
|
12
|
+
* end:
|
|
13
|
+
* }
|
|
14
|
+
* @param {int} sequenceLength
|
|
15
|
+
* @return {object} {start:
|
|
16
|
+
* end:
|
|
17
|
+
* }
|
|
18
|
+
*/
|
|
19
|
+
export default function zeroSubrangeByContainerRange(subRange, containerRange, sequenceLength) {
|
|
20
|
+
// ac.throw([ac.range, ac.range, ac.posInt], arguments);
|
|
21
|
+
//first check to make sure the container range fully contains the subRange
|
|
22
|
+
const trimmedSubRange = trimRangeByAnotherRange(subRange, containerRange, sequenceLength);
|
|
23
|
+
if (trimmedSubRange) {
|
|
24
|
+
throw new Error('subRange must be fully contained by containerRange! Otherwise this function does not make sense');
|
|
25
|
+
}
|
|
26
|
+
const newSubrange = {};
|
|
27
|
+
newSubrange.start = subRange.start - containerRange.start;
|
|
28
|
+
newSubrange.end = subRange.end - containerRange.start;
|
|
29
|
+
if (newSubrange.start < 0) {
|
|
30
|
+
newSubrange.start += sequenceLength;
|
|
31
|
+
}
|
|
32
|
+
if (newSubrange.end < 0) {
|
|
33
|
+
newSubrange.end += sequenceLength;
|
|
34
|
+
}
|
|
35
|
+
return newSubrange;
|
|
36
|
+
};
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
|
|
2
|
+
|
|
3
|
+
import {expect} from 'chai';
|
|
4
|
+
|
|
5
|
+
import zeroSubrangeByContainerRange from './zeroSubrangeByContainerRange.js';
|
|
6
|
+
describe('zeroSubrangeByContainerRange', function() {
|
|
7
|
+
it('throws an error if circular subRange does not fit within container range', function() {
|
|
8
|
+
let error = false;
|
|
9
|
+
try {
|
|
10
|
+
zeroSubrangeByContainerRange({
|
|
11
|
+
start: 20,
|
|
12
|
+
end: 10
|
|
13
|
+
}, {
|
|
14
|
+
start: 10,
|
|
15
|
+
end: 20
|
|
16
|
+
}, 30);
|
|
17
|
+
} catch (e) {
|
|
18
|
+
error = true;
|
|
19
|
+
}
|
|
20
|
+
expect(error).to.be.true;
|
|
21
|
+
});
|
|
22
|
+
it('throws an error if non circular subRange does not fit within container range', function() {
|
|
23
|
+
let error = false;
|
|
24
|
+
try {
|
|
25
|
+
zeroSubrangeByContainerRange({
|
|
26
|
+
start: 9,
|
|
27
|
+
end: 20
|
|
28
|
+
}, {
|
|
29
|
+
start: 10,
|
|
30
|
+
end: 20
|
|
31
|
+
}, 30);
|
|
32
|
+
} catch (e) {
|
|
33
|
+
error = true;
|
|
34
|
+
}
|
|
35
|
+
expect(error).to.be.true;
|
|
36
|
+
});
|
|
37
|
+
it('zeros non circular range if fully overlapped', function() {
|
|
38
|
+
const zeroedSubrange = zeroSubrangeByContainerRange({
|
|
39
|
+
start: 10,
|
|
40
|
+
end: 20
|
|
41
|
+
}, {
|
|
42
|
+
start: 10,
|
|
43
|
+
end: 20
|
|
44
|
+
}, 30);
|
|
45
|
+
|
|
46
|
+
expect(zeroedSubrange).to.deep.equal({
|
|
47
|
+
start: 0,
|
|
48
|
+
end: 10
|
|
49
|
+
});
|
|
50
|
+
});
|
|
51
|
+
});
|