@teselagen/ove 0.8.8 → 0.8.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CutsiteFilter/AdditionalCutsiteInfoDialog.d.ts +1 -1
- package/Editor/FillWindow.d.ts +1 -1
- package/Editor/index.d.ts +2 -2
- package/Reflex/ReflexContainer.d.ts +1 -3
- package/Reflex/ReflexElement.d.ts +1 -1
- package/commands/index.d.ts +2 -11
- package/index.cjs.js +29 -405
- package/index.es.js +29 -405
- package/index.umd.js +29 -405
- package/package.json +1 -1
- package/selectors/annotationSearchSelector.d.ts +1 -1
- package/selectors/cdsFeaturesSelector.d.ts +1 -1
- package/selectors/cutsitesSelector.d.ts +2 -2
- package/selectors/filteredFeaturesSelector.d.ts +1 -1
- package/selectors/filteredPartsSelector.d.ts +1 -1
- package/selectors/filteredPrimersSelector.d.ts +1 -1
- package/selectors/searchLayersSelector.d.ts +1 -1
- package/selectors/translationsSelector.d.ts +1 -11
- package/src/AlignmentView/index.js +15 -7
- package/src/PropertySidePanel/index.js +2 -1
- package/src/utils/getAlignedAminoAcidSequenceProps.js +8 -2
- package/utils/addWrappedAddons.d.ts +1 -1
- package/utils/editorUtils.d.ts +1 -1
- package/utils/getAlignedAminoAcidSequenceProps.d.ts +12 -0
- package/withEditorInteractions/clickAndDragUtils.d.ts +5 -5
package/index.umd.js
CHANGED
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@@ -37808,7 +37808,7 @@ ${latestSubscriptionCallbackError.current.stack}
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};
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__name(_AbstractPointerSensor, "AbstractPointerSensor");
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let AbstractPointerSensor = _AbstractPointerSensor;
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-
const events
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+
const events = {
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move: {
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name: "pointermove"
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},
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@@ -37822,7 +37822,7 @@ ${latestSubscriptionCallbackError.current.stack}
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event
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} = props;
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const listenerTarget = getOwnerDocument(event.target);
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super(props, events
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+
super(props, events, listenerTarget);
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}
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};
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__name(_PointerSensor, "PointerSensor");
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@@ -37845,7 +37845,7 @@ ${latestSubscriptionCallbackError.current.stack}
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return true;
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}, "handler")
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}];
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const events$1
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const events$1 = {
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move: {
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name: "mousemove"
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},
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@@ -37859,7 +37859,7 @@ ${latestSubscriptionCallbackError.current.stack}
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})(MouseButton || (MouseButton = {}));
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const _MouseSensor = class _MouseSensor extends AbstractPointerSensor {
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constructor(props) {
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37862
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-
super(props, events$1
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+
super(props, events$1, getOwnerDocument(props.event.target));
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}
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};
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__name(_MouseSensor, "MouseSensor");
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@@ -44471,7 +44471,7 @@ ${latestSubscriptionCallbackError.current.stack}
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__proto__: null,
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default: __viteBrowserExternal
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}, Symbol.toStringTag, { value: "Module" }));
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-
const require$$
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+
const require$$0 = /* @__PURE__ */ getAugmentedNamespace(__viteBrowserExternal$1);
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var objectInspect;
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var hasRequiredObjectInspect;
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function requireObjectInspect() {
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@@ -44529,7 +44529,7 @@ ${latestSubscriptionCallbackError.current.stack}
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return $replace.call(str, sepRegex, "$&_");
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}
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__name(addNumericSeparator, "addNumericSeparator");
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var utilInspect = require$$
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+
var utilInspect = require$$0;
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var inspectCustom = utilInspect.custom;
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var inspectSymbol = isSymbol2(inspectCustom) ? inspectCustom : null;
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objectInspect = /* @__PURE__ */ __name(function inspect_(obj, options, depth, seen) {
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@@ -118937,392 +118937,6 @@ ${latestSubscriptionCallbackError.current.stack}
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}, chromData);
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}
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__name(convertBasePosTraceToPerBpTrace, "convertBasePosTraceToPerBpTrace");
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var events = { exports: {} };
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var hasRequiredEvents;
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function requireEvents() {
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if (hasRequiredEvents) return events.exports;
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hasRequiredEvents = 1;
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var R2 = typeof Reflect === "object" ? Reflect : null;
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var ReflectApply = R2 && typeof R2.apply === "function" ? R2.apply : /* @__PURE__ */ __name(function ReflectApply2(target, receiver, args) {
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return Function.prototype.apply.call(target, receiver, args);
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}, "ReflectApply");
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var ReflectOwnKeys;
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if (R2 && typeof R2.ownKeys === "function") {
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ReflectOwnKeys = R2.ownKeys;
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} else if (Object.getOwnPropertySymbols) {
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ReflectOwnKeys = /* @__PURE__ */ __name(function ReflectOwnKeys2(target) {
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return Object.getOwnPropertyNames(target).concat(Object.getOwnPropertySymbols(target));
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}, "ReflectOwnKeys");
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} else {
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ReflectOwnKeys = /* @__PURE__ */ __name(function ReflectOwnKeys2(target) {
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return Object.getOwnPropertyNames(target);
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}, "ReflectOwnKeys");
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}
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function ProcessEmitWarning(warning2) {
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if (console && console.warn) console.warn(warning2);
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}
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__name(ProcessEmitWarning, "ProcessEmitWarning");
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var NumberIsNaN = Number.isNaN || /* @__PURE__ */ __name(function NumberIsNaN2(value) {
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return value !== value;
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}, "NumberIsNaN");
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function EventEmitter() {
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EventEmitter.init.call(this);
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}
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__name(EventEmitter, "EventEmitter");
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events.exports = EventEmitter;
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events.exports.once = once2;
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EventEmitter.EventEmitter = EventEmitter;
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EventEmitter.prototype._events = void 0;
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EventEmitter.prototype._eventsCount = 0;
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EventEmitter.prototype._maxListeners = void 0;
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var defaultMaxListeners = 10;
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function checkListener(listener) {
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if (typeof listener !== "function") {
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throw new TypeError('The "listener" argument must be of type Function. Received type ' + typeof listener);
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}
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}
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__name(checkListener, "checkListener");
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Object.defineProperty(EventEmitter, "defaultMaxListeners", {
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enumerable: true,
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get: /* @__PURE__ */ __name(function() {
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return defaultMaxListeners;
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}, "get"),
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set: /* @__PURE__ */ __name(function(arg) {
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if (typeof arg !== "number" || arg < 0 || NumberIsNaN(arg)) {
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throw new RangeError('The value of "defaultMaxListeners" is out of range. It must be a non-negative number. Received ' + arg + ".");
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}
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defaultMaxListeners = arg;
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}, "set")
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});
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EventEmitter.init = function() {
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if (this._events === void 0 || this._events === Object.getPrototypeOf(this)._events) {
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this._events = /* @__PURE__ */ Object.create(null);
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this._eventsCount = 0;
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}
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this._maxListeners = this._maxListeners || void 0;
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};
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EventEmitter.prototype.setMaxListeners = /* @__PURE__ */ __name(function setMaxListeners(n2) {
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if (typeof n2 !== "number" || n2 < 0 || NumberIsNaN(n2)) {
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throw new RangeError('The value of "n" is out of range. It must be a non-negative number. Received ' + n2 + ".");
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}
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this._maxListeners = n2;
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return this;
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}, "setMaxListeners");
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function _getMaxListeners(that) {
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if (that._maxListeners === void 0)
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return EventEmitter.defaultMaxListeners;
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return that._maxListeners;
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}
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__name(_getMaxListeners, "_getMaxListeners");
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EventEmitter.prototype.getMaxListeners = /* @__PURE__ */ __name(function getMaxListeners() {
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return _getMaxListeners(this);
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}, "getMaxListeners");
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EventEmitter.prototype.emit = /* @__PURE__ */ __name(function emit(type2) {
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var args = [];
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for (var i2 = 1; i2 < arguments.length; i2++) args.push(arguments[i2]);
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var doError = type2 === "error";
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var events2 = this._events;
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if (events2 !== void 0)
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doError = doError && events2.error === void 0;
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else if (!doError)
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return false;
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if (doError) {
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var er;
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if (args.length > 0)
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er = args[0];
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if (er instanceof Error) {
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throw er;
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}
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var err2 = new Error("Unhandled error." + (er ? " (" + er.message + ")" : ""));
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err2.context = er;
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throw err2;
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}
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var handler = events2[type2];
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if (handler === void 0)
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return false;
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if (typeof handler === "function") {
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ReflectApply(handler, this, args);
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} else {
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var len = handler.length;
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var listeners = arrayClone(handler, len);
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for (var i2 = 0; i2 < len; ++i2)
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ReflectApply(listeners[i2], this, args);
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}
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return true;
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}, "emit");
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function _addListener(target, type2, listener, prepend) {
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var m2;
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var events2;
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var existing;
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checkListener(listener);
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events2 = target._events;
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if (events2 === void 0) {
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events2 = target._events = /* @__PURE__ */ Object.create(null);
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target._eventsCount = 0;
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} else {
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if (events2.newListener !== void 0) {
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target.emit(
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"newListener",
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type2,
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listener.listener ? listener.listener : listener
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);
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events2 = target._events;
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}
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existing = events2[type2];
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}
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if (existing === void 0) {
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existing = events2[type2] = listener;
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++target._eventsCount;
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} else {
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if (typeof existing === "function") {
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existing = events2[type2] = prepend ? [listener, existing] : [existing, listener];
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} else if (prepend) {
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existing.unshift(listener);
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} else {
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existing.push(listener);
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}
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m2 = _getMaxListeners(target);
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if (m2 > 0 && existing.length > m2 && !existing.warned) {
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existing.warned = true;
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var w2 = new Error("Possible EventEmitter memory leak detected. " + existing.length + " " + String(type2) + " listeners added. Use emitter.setMaxListeners() to increase limit");
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w2.name = "MaxListenersExceededWarning";
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w2.emitter = target;
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w2.type = type2;
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w2.count = existing.length;
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}
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}
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return target;
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}
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__name(_addListener, "_addListener");
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EventEmitter.prototype.addListener = /* @__PURE__ */ __name(function addListener(type2, listener) {
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return _addListener(this, type2, listener, false);
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}, "addListener");
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EventEmitter.prototype.on = EventEmitter.prototype.addListener;
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EventEmitter.prototype.prependListener = /* @__PURE__ */ __name(function prependListener(type2, listener) {
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return _addListener(this, type2, listener, true);
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}, "prependListener");
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function onceWrapper() {
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if (!this.fired) {
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this.target.removeListener(this.type, this.wrapFn);
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this.fired = true;
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if (arguments.length === 0)
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return this.listener.call(this.target);
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return this.listener.apply(this.target, arguments);
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}
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var state2 = { fired: false, wrapFn: void 0, target, type: type2, listener };
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var wrapped = onceWrapper.bind(state2);
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wrapped.listener = listener;
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__name(_onceWrap, "_onceWrap");
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checkListener(listener);
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this.on(type2, _onceWrap(this, type2, listener));
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EventEmitter.prototype.prependOnceListener = /* @__PURE__ */ __name(function prependOnceListener(type2, listener) {
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checkListener(listener);
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this.prependListener(type2, _onceWrap(this, type2, listener));
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return this;
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}, "prependOnceListener");
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EventEmitter.prototype.removeListener = /* @__PURE__ */ __name(function removeListener(type2, listener) {
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var list2, events2, position2, i2, originalListener;
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checkListener(listener);
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events2 = this._events;
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if (events2 === void 0)
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return this;
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list2 = events2[type2];
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if (list2 === void 0)
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return this;
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if (list2 === listener || list2.listener === listener) {
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if (--this._eventsCount === 0)
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this._events = /* @__PURE__ */ Object.create(null);
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else {
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delete events2[type2];
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if (events2.removeListener)
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this.emit("removeListener", type2, list2.listener || listener);
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}
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} else if (typeof list2 !== "function") {
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position2 = -1;
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for (i2 = list2.length - 1; i2 >= 0; i2--) {
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|
-
if (list2[i2] === listener || list2[i2].listener === listener) {
|
|
119154
|
-
originalListener = list2[i2].listener;
|
|
119155
|
-
position2 = i2;
|
|
119156
|
-
break;
|
|
119157
|
-
}
|
|
119158
|
-
}
|
|
119159
|
-
if (position2 < 0)
|
|
119160
|
-
return this;
|
|
119161
|
-
if (position2 === 0)
|
|
119162
|
-
list2.shift();
|
|
119163
|
-
else {
|
|
119164
|
-
spliceOne2(list2, position2);
|
|
119165
|
-
}
|
|
119166
|
-
if (list2.length === 1)
|
|
119167
|
-
events2[type2] = list2[0];
|
|
119168
|
-
if (events2.removeListener !== void 0)
|
|
119169
|
-
this.emit("removeListener", type2, originalListener || listener);
|
|
119170
|
-
}
|
|
119171
|
-
return this;
|
|
119172
|
-
}, "removeListener");
|
|
119173
|
-
EventEmitter.prototype.off = EventEmitter.prototype.removeListener;
|
|
119174
|
-
EventEmitter.prototype.removeAllListeners = /* @__PURE__ */ __name(function removeAllListeners(type2) {
|
|
119175
|
-
var listeners, events2, i2;
|
|
119176
|
-
events2 = this._events;
|
|
119177
|
-
if (events2 === void 0)
|
|
119178
|
-
return this;
|
|
119179
|
-
if (events2.removeListener === void 0) {
|
|
119180
|
-
if (arguments.length === 0) {
|
|
119181
|
-
this._events = /* @__PURE__ */ Object.create(null);
|
|
119182
|
-
this._eventsCount = 0;
|
|
119183
|
-
} else if (events2[type2] !== void 0) {
|
|
119184
|
-
if (--this._eventsCount === 0)
|
|
119185
|
-
this._events = /* @__PURE__ */ Object.create(null);
|
|
119186
|
-
else
|
|
119187
|
-
delete events2[type2];
|
|
119188
|
-
}
|
|
119189
|
-
return this;
|
|
119190
|
-
}
|
|
119191
|
-
if (arguments.length === 0) {
|
|
119192
|
-
var keys2 = Object.keys(events2);
|
|
119193
|
-
var key;
|
|
119194
|
-
for (i2 = 0; i2 < keys2.length; ++i2) {
|
|
119195
|
-
key = keys2[i2];
|
|
119196
|
-
if (key === "removeListener") continue;
|
|
119197
|
-
this.removeAllListeners(key);
|
|
119198
|
-
}
|
|
119199
|
-
this.removeAllListeners("removeListener");
|
|
119200
|
-
this._events = /* @__PURE__ */ Object.create(null);
|
|
119201
|
-
this._eventsCount = 0;
|
|
119202
|
-
return this;
|
|
119203
|
-
}
|
|
119204
|
-
listeners = events2[type2];
|
|
119205
|
-
if (typeof listeners === "function") {
|
|
119206
|
-
this.removeListener(type2, listeners);
|
|
119207
|
-
} else if (listeners !== void 0) {
|
|
119208
|
-
for (i2 = listeners.length - 1; i2 >= 0; i2--) {
|
|
119209
|
-
this.removeListener(type2, listeners[i2]);
|
|
119210
|
-
}
|
|
119211
|
-
}
|
|
119212
|
-
return this;
|
|
119213
|
-
}, "removeAllListeners");
|
|
119214
|
-
function _listeners(target, type2, unwrap2) {
|
|
119215
|
-
var events2 = target._events;
|
|
119216
|
-
if (events2 === void 0)
|
|
119217
|
-
return [];
|
|
119218
|
-
var evlistener = events2[type2];
|
|
119219
|
-
if (evlistener === void 0)
|
|
119220
|
-
return [];
|
|
119221
|
-
if (typeof evlistener === "function")
|
|
119222
|
-
return unwrap2 ? [evlistener.listener || evlistener] : [evlistener];
|
|
119223
|
-
return unwrap2 ? unwrapListeners(evlistener) : arrayClone(evlistener, evlistener.length);
|
|
119224
|
-
}
|
|
119225
|
-
__name(_listeners, "_listeners");
|
|
119226
|
-
EventEmitter.prototype.listeners = /* @__PURE__ */ __name(function listeners(type2) {
|
|
119227
|
-
return _listeners(this, type2, true);
|
|
119228
|
-
}, "listeners");
|
|
119229
|
-
EventEmitter.prototype.rawListeners = /* @__PURE__ */ __name(function rawListeners(type2) {
|
|
119230
|
-
return _listeners(this, type2, false);
|
|
119231
|
-
}, "rawListeners");
|
|
119232
|
-
EventEmitter.listenerCount = function(emitter, type2) {
|
|
119233
|
-
if (typeof emitter.listenerCount === "function") {
|
|
119234
|
-
return emitter.listenerCount(type2);
|
|
119235
|
-
} else {
|
|
119236
|
-
return listenerCount.call(emitter, type2);
|
|
119237
|
-
}
|
|
119238
|
-
};
|
|
119239
|
-
EventEmitter.prototype.listenerCount = listenerCount;
|
|
119240
|
-
function listenerCount(type2) {
|
|
119241
|
-
var events2 = this._events;
|
|
119242
|
-
if (events2 !== void 0) {
|
|
119243
|
-
var evlistener = events2[type2];
|
|
119244
|
-
if (typeof evlistener === "function") {
|
|
119245
|
-
return 1;
|
|
119246
|
-
} else if (evlistener !== void 0) {
|
|
119247
|
-
return evlistener.length;
|
|
119248
|
-
}
|
|
119249
|
-
}
|
|
119250
|
-
return 0;
|
|
119251
|
-
}
|
|
119252
|
-
__name(listenerCount, "listenerCount");
|
|
119253
|
-
EventEmitter.prototype.eventNames = /* @__PURE__ */ __name(function eventNames() {
|
|
119254
|
-
return this._eventsCount > 0 ? ReflectOwnKeys(this._events) : [];
|
|
119255
|
-
}, "eventNames");
|
|
119256
|
-
function arrayClone(arr, n2) {
|
|
119257
|
-
var copy = new Array(n2);
|
|
119258
|
-
for (var i2 = 0; i2 < n2; ++i2)
|
|
119259
|
-
copy[i2] = arr[i2];
|
|
119260
|
-
return copy;
|
|
119261
|
-
}
|
|
119262
|
-
__name(arrayClone, "arrayClone");
|
|
119263
|
-
function spliceOne2(list2, index2) {
|
|
119264
|
-
for (; index2 + 1 < list2.length; index2++)
|
|
119265
|
-
list2[index2] = list2[index2 + 1];
|
|
119266
|
-
list2.pop();
|
|
119267
|
-
}
|
|
119268
|
-
__name(spliceOne2, "spliceOne");
|
|
119269
|
-
function unwrapListeners(arr) {
|
|
119270
|
-
var ret = new Array(arr.length);
|
|
119271
|
-
for (var i2 = 0; i2 < ret.length; ++i2) {
|
|
119272
|
-
ret[i2] = arr[i2].listener || arr[i2];
|
|
119273
|
-
}
|
|
119274
|
-
return ret;
|
|
119275
|
-
}
|
|
119276
|
-
__name(unwrapListeners, "unwrapListeners");
|
|
119277
|
-
function once2(emitter, name2) {
|
|
119278
|
-
return new Promise(function(resolve, reject) {
|
|
119279
|
-
function errorListener(err2) {
|
|
119280
|
-
emitter.removeListener(name2, resolver2);
|
|
119281
|
-
reject(err2);
|
|
119282
|
-
}
|
|
119283
|
-
__name(errorListener, "errorListener");
|
|
119284
|
-
function resolver2() {
|
|
119285
|
-
if (typeof emitter.removeListener === "function") {
|
|
119286
|
-
emitter.removeListener("error", errorListener);
|
|
119287
|
-
}
|
|
119288
|
-
resolve([].slice.call(arguments));
|
|
119289
|
-
}
|
|
119290
|
-
__name(resolver2, "resolver");
|
|
119291
|
-
eventTargetAgnosticAddListener(emitter, name2, resolver2, { once: true });
|
|
119292
|
-
if (name2 !== "error") {
|
|
119293
|
-
addErrorHandlerIfEventEmitter(emitter, errorListener, { once: true });
|
|
119294
|
-
}
|
|
119295
|
-
});
|
|
119296
|
-
}
|
|
119297
|
-
__name(once2, "once");
|
|
119298
|
-
function addErrorHandlerIfEventEmitter(emitter, handler, flags) {
|
|
119299
|
-
if (typeof emitter.on === "function") {
|
|
119300
|
-
eventTargetAgnosticAddListener(emitter, "error", handler, flags);
|
|
119301
|
-
}
|
|
119302
|
-
}
|
|
119303
|
-
__name(addErrorHandlerIfEventEmitter, "addErrorHandlerIfEventEmitter");
|
|
119304
|
-
function eventTargetAgnosticAddListener(emitter, name2, listener, flags) {
|
|
119305
|
-
if (typeof emitter.on === "function") {
|
|
119306
|
-
if (flags.once) {
|
|
119307
|
-
emitter.once(name2, listener);
|
|
119308
|
-
} else {
|
|
119309
|
-
emitter.on(name2, listener);
|
|
119310
|
-
}
|
|
119311
|
-
} else if (typeof emitter.addEventListener === "function") {
|
|
119312
|
-
emitter.addEventListener(name2, /* @__PURE__ */ __name(function wrapListener(arg) {
|
|
119313
|
-
if (flags.once) {
|
|
119314
|
-
emitter.removeEventListener(name2, wrapListener);
|
|
119315
|
-
}
|
|
119316
|
-
listener(arg);
|
|
119317
|
-
}, "wrapListener"));
|
|
119318
|
-
} else {
|
|
119319
|
-
throw new TypeError('The "emitter" argument must be of type EventEmitter. Received type ' + typeof emitter);
|
|
119320
|
-
}
|
|
119321
|
-
}
|
|
119322
|
-
__name(eventTargetAgnosticAddListener, "eventTargetAgnosticAddListener");
|
|
119323
|
-
return events.exports;
|
|
119324
|
-
}
|
|
119325
|
-
__name(requireEvents, "requireEvents");
|
|
119326
118940
|
var inherits_browser = { exports: {} };
|
|
119327
118941
|
var hasRequiredInherits_browser;
|
|
119328
118942
|
function requireInherits_browser() {
|
|
@@ -119362,7 +118976,7 @@ ${latestSubscriptionCallbackError.current.stack}
|
|
|
119362
118976
|
function requireStreamBrowser() {
|
|
119363
118977
|
if (hasRequiredStreamBrowser) return streamBrowser;
|
|
119364
118978
|
hasRequiredStreamBrowser = 1;
|
|
119365
|
-
streamBrowser =
|
|
118979
|
+
streamBrowser = require$$0.EventEmitter;
|
|
119366
118980
|
return streamBrowser;
|
|
119367
118981
|
}
|
|
119368
118982
|
__name(requireStreamBrowser, "requireStreamBrowser");
|
|
@@ -119443,7 +119057,7 @@ ${latestSubscriptionCallbackError.current.stack}
|
|
|
119443
119057
|
}
|
|
119444
119058
|
__name(_toPrimitive2, "_toPrimitive");
|
|
119445
119059
|
var _require = requireBuffer(), Buffer2 = _require.Buffer;
|
|
119446
|
-
var _require2 = require$$
|
|
119060
|
+
var _require2 = require$$0, inspect = _require2.inspect;
|
|
119447
119061
|
var custom = inspect && inspect.custom || "inspect";
|
|
119448
119062
|
function copyBuffer(src2, target, offset2) {
|
|
119449
119063
|
Buffer2.prototype.copy.call(src2, target, offset2);
|
|
@@ -120784,7 +120398,7 @@ ${latestSubscriptionCallbackError.current.stack}
|
|
|
120784
120398
|
_stream_readable = Readable;
|
|
120785
120399
|
var Duplex;
|
|
120786
120400
|
Readable.ReadableState = ReadableState;
|
|
120787
|
-
|
|
120401
|
+
require$$0.EventEmitter;
|
|
120788
120402
|
var EElistenerCount = /* @__PURE__ */ __name(function EElistenerCount2(emitter, type2) {
|
|
120789
120403
|
return emitter.listeners(type2).length;
|
|
120790
120404
|
}, "EElistenerCount");
|
|
@@ -120800,7 +120414,7 @@ ${latestSubscriptionCallbackError.current.stack}
|
|
|
120800
120414
|
return Buffer2.isBuffer(obj) || obj instanceof OurUint8Array;
|
|
120801
120415
|
}
|
|
120802
120416
|
__name(_isUint8Array, "_isUint8Array");
|
|
120803
|
-
var debugUtil = require$$
|
|
120417
|
+
var debugUtil = require$$0;
|
|
120804
120418
|
var debug;
|
|
120805
120419
|
if (debugUtil && debugUtil.debuglog) {
|
|
120806
120420
|
debug = debugUtil.debuglog("stream");
|
|
@@ -121757,7 +121371,7 @@ ${latestSubscriptionCallbackError.current.stack}
|
|
|
121757
121371
|
if (hasRequiredStreamBrowserify) return streamBrowserify;
|
|
121758
121372
|
hasRequiredStreamBrowserify = 1;
|
|
121759
121373
|
streamBrowserify = Stream;
|
|
121760
|
-
var EE =
|
|
121374
|
+
var EE = require$$0.EventEmitter;
|
|
121761
121375
|
var inherits = requireInherits_browser();
|
|
121762
121376
|
inherits(Stream, EE);
|
|
121763
121377
|
Stream.Readable = require_stream_readable();
|
|
@@ -144725,7 +144339,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
|
|
|
144725
144339
|
input.click();
|
|
144726
144340
|
}
|
|
144727
144341
|
__name(showFileDialog, "showFileDialog");
|
|
144728
|
-
const version = "0.8.
|
|
144342
|
+
const version = "0.8.8";
|
|
144729
144343
|
const packageJson = {
|
|
144730
144344
|
version
|
|
144731
144345
|
};
|
|
@@ -164603,6 +164217,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
|
|
|
164603
164217
|
{
|
|
164604
164218
|
ref: sidebarRef,
|
|
164605
164219
|
style: __spreadValues({
|
|
164220
|
+
position: "relative",
|
|
164606
164221
|
width: isOpen2 ? 350 : 0,
|
|
164607
164222
|
minWidth: isOpen2 ? 350 : 0,
|
|
164608
164223
|
maxWidth: isOpen2 ? 350 : 0,
|
|
@@ -164622,7 +164237,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
|
|
|
164622
164237
|
{
|
|
164623
164238
|
style: {
|
|
164624
164239
|
position: "absolute",
|
|
164625
|
-
top:
|
|
164240
|
+
top: 0,
|
|
164626
164241
|
right: 10,
|
|
164627
164242
|
zIndex: 1,
|
|
164628
164243
|
cursor: "pointer"
|
|
@@ -164847,13 +164462,18 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
|
|
|
164847
164462
|
};
|
|
164848
164463
|
}
|
|
164849
164464
|
__name(getLabileSites, "getLabileSites");
|
|
164850
|
-
|
|
164465
|
+
function parseTracks(tracks) {
|
|
164851
164466
|
let sequences = {};
|
|
164852
164467
|
tracks.forEach((at) => {
|
|
164853
164468
|
sequences = __spreadProps(__spreadValues({}, sequences), {
|
|
164854
164469
|
[at.alignmentData.name]: at.alignmentData.sequence
|
|
164855
164470
|
});
|
|
164856
164471
|
});
|
|
164472
|
+
return sequences;
|
|
164473
|
+
}
|
|
164474
|
+
__name(parseTracks, "parseTracks");
|
|
164475
|
+
const getAlignedAminoAcidSequenceProps = /* @__PURE__ */ __name((tracks) => {
|
|
164476
|
+
const sequences = parseTracks(tracks);
|
|
164857
164477
|
const identity2 = calculateIdentityMatrix(sequences);
|
|
164858
164478
|
const { overallIdentity, frequencies } = getIdentityAndFrequencies(sequences);
|
|
164859
164479
|
const labileSites = getLabileSites(sequences, 0.5);
|
|
@@ -165105,6 +164725,10 @@ ${seqDataToCopy}\r
|
|
|
165105
164725
|
alignmentHolderTop.current.scrollLeft = scrollPercentageToUse * (alignmentHolderTop.current.scrollWidth - alignmentHolderTop.current.clientWidth);
|
|
165106
164726
|
}
|
|
165107
164727
|
}, "scrollAlignmentToPercent");
|
|
164728
|
+
const aminoAcidAlignmentProperties = reactExports.useMemo(() => {
|
|
164729
|
+
if (isPairwise || !alignmentTracks[0].sequenceData.isProtein) return;
|
|
164730
|
+
return getAlignedAminoAcidSequenceProps(alignmentTracks);
|
|
164731
|
+
}, [alignmentTracks, isPairwise]);
|
|
165108
164732
|
reactExports.useEffect(() => {
|
|
165109
164733
|
window.scrollAlignmentToPercent = scrollAlignmentToPercent;
|
|
165110
164734
|
if (window.Cypress)
|
|
@@ -165471,10 +165095,6 @@ ${seqDataToCopy}\r
|
|
|
165471
165095
|
annotationLabelVisibility: alignmentVisibilityToolOptions.alignmentAnnotationLabelVisibility
|
|
165472
165096
|
});
|
|
165473
165097
|
}, "estimateRowHeight");
|
|
165474
|
-
const aminoAcidAlignmentProperties = reactExports.useMemo(() => {
|
|
165475
|
-
if (isPairwise || !alignmentTracks[0].sequenceData.isProtein) return;
|
|
165476
|
-
return getAlignedAminoAcidSequenceProps(alignmentTracks);
|
|
165477
|
-
}, [alignmentTracks, isPairwise]);
|
|
165478
165098
|
const renderItem = /* @__PURE__ */ __name((_i, _key, isTemplate, cloneProps) => {
|
|
165479
165099
|
var _a3, _b2, _c2, _d2, _e;
|
|
165480
165100
|
const isDragDisabled = !allowTrackRearrange || isPairwise;
|
|
@@ -166537,6 +166157,7 @@ ${seqDataToCopy}\r
|
|
|
166537
166157
|
withEditorProps,
|
|
166538
166158
|
connect(
|
|
166539
166159
|
(state2, ownProps) => {
|
|
166160
|
+
var _a2, _b2;
|
|
166540
166161
|
const {
|
|
166541
166162
|
VectorEditor: {
|
|
166542
166163
|
__allEditorsOptions: { alignments: alignments2 }
|
|
@@ -166601,6 +166222,8 @@ ${seqDataToCopy}\r
|
|
|
166601
166222
|
togglableAlignmentAnnotationSettings[annotation] = alignmentAnnotationVisibility[annotation];
|
|
166602
166223
|
}
|
|
166603
166224
|
});
|
|
166225
|
+
const tracks = parseTracks(alignmentTracks);
|
|
166226
|
+
const labileSites = getLabileSites(tracks, 0.5);
|
|
166604
166227
|
const annotationsWithCounts = [];
|
|
166605
166228
|
if (alignmentTracks) {
|
|
166606
166229
|
let totalNumOfFeatures = 0;
|
|
@@ -166615,7 +166238,8 @@ ${seqDataToCopy}\r
|
|
|
166615
166238
|
});
|
|
166616
166239
|
annotationsWithCounts.push({
|
|
166617
166240
|
features: totalNumOfFeatures,
|
|
166618
|
-
parts: totalNumOfParts
|
|
166241
|
+
parts: totalNumOfParts,
|
|
166242
|
+
labileSites: (_b2 = (_a2 = labileSites.sites) == null ? void 0 : _a2.length) != null ? _b2 : 0
|
|
166619
166243
|
});
|
|
166620
166244
|
} else if (pairwiseAlignments) {
|
|
166621
166245
|
pairwiseAlignments.forEach((pairwise) => {
|
package/package.json
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
export const searchableTypes: string[];
|
|
2
|
-
declare const _default: ((state: any) => any[]
|
|
2
|
+
declare const _default: ((state: any) => any[]) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, ...args: any[]) => any[], {
|
|
3
3
|
clearCache: () => void;
|
|
4
4
|
}> & {
|
|
5
5
|
clearCache: () => void;
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) => any
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
|
|
2
2
|
clearCache: () => void;
|
|
3
3
|
}> & {
|
|
4
4
|
clearCache: () => void;
|
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
declare const _default: ((state: any) => {
|
|
2
2
|
cutsitesByName: {};
|
|
3
3
|
cutsitesById: {};
|
|
4
|
-
cutsitesArray:
|
|
4
|
+
cutsitesArray: any;
|
|
5
5
|
}) & import('reselect').OutputSelectorFields<(...args: any) => {
|
|
6
6
|
cutsitesByName: {};
|
|
7
7
|
cutsitesById: {};
|
|
8
|
-
cutsitesArray:
|
|
8
|
+
cutsitesArray: any;
|
|
9
9
|
}, {
|
|
10
10
|
clearCache: () => void;
|
|
11
11
|
}> & {
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) =>
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => any, {
|
|
2
2
|
clearCache: () => void;
|
|
3
3
|
}> & {
|
|
4
4
|
clearCache: () => void;
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) => any
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => any, {
|
|
2
2
|
clearCache: () => void;
|
|
3
3
|
}> & {
|
|
4
4
|
clearCache: () => void;
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) =>
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => any, {
|
|
2
2
|
clearCache: () => void;
|
|
3
3
|
}> & {
|
|
4
4
|
clearCache: () => void;
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) => any
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any, args_5: any, args_6: any, args_7: any, args_8: any) => any, {
|
|
2
2
|
clearCache: () => void;
|
|
3
3
|
}> & {
|
|
4
4
|
clearCache: () => void;
|
|
@@ -1,14 +1,4 @@
|
|
|
1
|
-
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(
|
|
2
|
-
start: number;
|
|
3
|
-
end: number;
|
|
4
|
-
length: number;
|
|
5
|
-
internalStartCodonIndices: never[];
|
|
6
|
-
frame: number;
|
|
7
|
-
forward: any;
|
|
8
|
-
annotationTypePlural: string;
|
|
9
|
-
isOrf: boolean;
|
|
10
|
-
id: any;
|
|
11
|
-
}[], args_4: any, args_5: any, args_6: any[], args_7: any, args_8: any, args_9: any, args_10: any, args_11: any, args_12: any) => any, {
|
|
1
|
+
declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(...args: any) => any, {
|
|
12
2
|
clearCache: () => void;
|
|
13
3
|
}> & {
|
|
14
4
|
clearCache: () => void;
|