@teselagen/ove 0.8.41 → 0.8.42

package/index.cjs.js

@@ -90314,17 +90314,20 @@ function snapgeneToJson(_0) {
           const b3 = new fxpExports.XMLParser({
             ignoreAttributes: false,
             attributeNamePrefix: "",
-            isArray: /* @__PURE__ */ __name((name2) => name2 === "Feature" || name2 === "Segment", "isArray")
+            isArray: /* @__PURE__ */ __name((name2) => ["Feature", "Segment", "Q", "V"].includes(name2), "isArray")
           }).parse(xml2);
           const { Features: { Feature: Feature2 = [] } = {} } = b3;
           data.features = [];
           Feature2.forEach((feat) => {
+            var _a2, _b2, _c, _d;
             const { directionality, Segment = [], name: name2, type: type2 } = feat;
+            let color2;
             let maxStart = 0;
             let maxEnd = 0;
             const locations = Segment && Segment.map((seg) => {
               if (!seg) throw new Error("invalid feature definition");
               const { range: range2 } = seg;
+              if (seg.color) color2 = seg.color;
               let { start: start2, end: end2 } = getStartAndEndFromRangeString(range2);
               start2 = isProtein2 ? start2 * 3 : start2;
               end2 = isProtein2 ? end2 * 3 + 2 : end2;
@@ -90335,6 +90338,10 @@ function snapgeneToJson(_0) {
                 end: end2
               };
             });
+            const colorQual = (_a2 = feat.Q) == null ? void 0 : _a2.find((q2) => q2.name === "color");
+            if (colorQual) {
+              color2 = ((_c = (_b2 = colorQual.V) == null ? void 0 : _b2[0]) == null ? void 0 : _c.text) || ((_d = colorQual.V) == null ? void 0 : _d[0]);
+            }
             data.features.push(__spreadProps(__spreadValues({
               name: name2,
               type: type2
@@ -90342,8 +90349,8 @@ function snapgeneToJson(_0) {
               strand: directionality ? strand_dict[directionality][0] : 1,
               arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
               start: maxStart,
-              end: maxEnd
-              // color,
+              end: maxEnd,
+              color: color2
             }));
           });
         } else if (ord(next_byte) === 6) {
@@ -117272,7 +117279,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.41";
+const version = "0.8.42";
 const packageJson = {
   version
 };

package/index.es.js

@@ -90296,17 +90296,20 @@ function snapgeneToJson(_0) {
           const b3 = new fxpExports.XMLParser({
             ignoreAttributes: false,
             attributeNamePrefix: "",
-            isArray: /* @__PURE__ */ __name((name2) => name2 === "Feature" || name2 === "Segment", "isArray")
+            isArray: /* @__PURE__ */ __name((name2) => ["Feature", "Segment", "Q", "V"].includes(name2), "isArray")
           }).parse(xml2);
           const { Features: { Feature: Feature2 = [] } = {} } = b3;
           data.features = [];
           Feature2.forEach((feat) => {
+            var _a2, _b2, _c, _d;
             const { directionality, Segment = [], name: name2, type: type2 } = feat;
+            let color2;
             let maxStart = 0;
             let maxEnd = 0;
             const locations = Segment && Segment.map((seg) => {
               if (!seg) throw new Error("invalid feature definition");
               const { range: range2 } = seg;
+              if (seg.color) color2 = seg.color;
               let { start: start2, end: end2 } = getStartAndEndFromRangeString(range2);
               start2 = isProtein2 ? start2 * 3 : start2;
               end2 = isProtein2 ? end2 * 3 + 2 : end2;
@@ -90317,6 +90320,10 @@ function snapgeneToJson(_0) {
                 end: end2
               };
             });
+            const colorQual = (_a2 = feat.Q) == null ? void 0 : _a2.find((q2) => q2.name === "color");
+            if (colorQual) {
+              color2 = ((_c = (_b2 = colorQual.V) == null ? void 0 : _b2[0]) == null ? void 0 : _c.text) || ((_d = colorQual.V) == null ? void 0 : _d[0]);
+            }
             data.features.push(__spreadProps(__spreadValues({
               name: name2,
               type: type2
@@ -90324,8 +90331,8 @@ function snapgeneToJson(_0) {
               strand: directionality ? strand_dict[directionality][0] : 1,
               arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
               start: maxStart,
-              end: maxEnd
-              // color,
+              end: maxEnd,
+              color: color2
             }));
           });
         } else if (ord(next_byte) === 6) {
@@ -117254,7 +117261,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.41";
+const version = "0.8.42";
 const packageJson = {
   version
 };

package/index.umd.js

@@ -119217,17 +119217,20 @@ ${latestSubscriptionCallbackError.current.stack}
             const b3 = new fxpExports.XMLParser({
               ignoreAttributes: false,
               attributeNamePrefix: "",
-              isArray: /* @__PURE__ */ __name((name2) => name2 === "Feature" || name2 === "Segment", "isArray")
+              isArray: /* @__PURE__ */ __name((name2) => ["Feature", "Segment", "Q", "V"].includes(name2), "isArray")
             }).parse(xml2);
             const { Features: { Feature: Feature2 = [] } = {} } = b3;
             data.features = [];
             Feature2.forEach((feat) => {
+              var _a2, _b2, _c2, _d2;
               const { directionality, Segment = [], name: name2, type: type2 } = feat;
+              let color2;
               let maxStart = 0;
               let maxEnd = 0;
               const locations = Segment && Segment.map((seg) => {
                 if (!seg) throw new Error("invalid feature definition");
                 const { range: range2 } = seg;
+                if (seg.color) color2 = seg.color;
                 let { start: start2, end: end2 } = getStartAndEndFromRangeString(range2);
                 start2 = isProtein2 ? start2 * 3 : start2;
                 end2 = isProtein2 ? end2 * 3 + 2 : end2;
@@ -119238,6 +119241,10 @@ ${latestSubscriptionCallbackError.current.stack}
                   end: end2
                 };
               });
+              const colorQual = (_a2 = feat.Q) == null ? void 0 : _a2.find((q2) => q2.name === "color");
+              if (colorQual) {
+                color2 = ((_c2 = (_b2 = colorQual.V) == null ? void 0 : _b2[0]) == null ? void 0 : _c2.text) || ((_d2 = colorQual.V) == null ? void 0 : _d2[0]);
+              }
               data.features.push(__spreadProps(__spreadValues({
                 name: name2,
                 type: type2
@@ -119245,8 +119252,8 @@ ${latestSubscriptionCallbackError.current.stack}
                 strand: directionality ? strand_dict[directionality][0] : 1,
                 arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
                 start: maxStart,
-                end: maxEnd
-                // color,
+                end: maxEnd,
+                color: color2
               }));
             });
           } else if (ord(next_byte) === 6) {
@@ -145370,7 +145377,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
     input.click();
   }
   __name(showFileDialog, "showFileDialog");
-  const version = "0.8.41";
+  const version = "0.8.42";
   const packageJson = {
     version
   };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.8.41",
+  "version": "0.8.42",
   "main": "./src/index.js",
   "type": "module",
   "repository": "https://github.com/TeselaGen/tg-oss",
@@ -15,7 +15,7 @@
     "@blueprintjs/core": "3.54.0",
     "@hello-pangea/dnd": "16.2.0",
     "@risingstack/react-easy-state": "^6.3.0",
-    "@teselagen/bio-parsers": "0.4.36",
+    "@teselagen/bio-parsers": "0.4.37",
     "@teselagen/file-utils": "0.3.23",
     "@teselagen/range-utils": "0.3.20",
     "@teselagen/react-list": "0.8.18",