@teselagen/ove 0.8.38 → 0.8.39

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Files changed (8) hide show
  1. package/index.cjs.js +8 -7
  2. package/index.es.js +8 -7
  3. package/index.umd.js +8 -7
  4. package/package.json +1 -1
  5. package/src/CircularView/index.js +3 -2
  6. package/src/LinearView/index.js +12 -8
  7. package/src/utils/editorUtils.js +2 -2
  8. package/utils/editorUtils.d.ts +1 -1
package/index.cjs.js CHANGED
@@ -98096,13 +98096,13 @@ function addCustomEnzyme(newEnz) {
98096
98096
  );
98097
98097
  }
98098
98098
  __name(addCustomEnzyme, "addCustomEnzyme");
98099
- function pareDownAnnotations(annotations, max2) {
98099
+ function pareDownAnnotations(annotations, max2, sequenceLength) {
98100
98100
  let annotationsToPass = annotations;
98101
98101
  let paredDown = false;
98102
98102
  if (Object.keys(annotations).length > max2) {
98103
98103
  paredDown = true;
98104
98104
  const sortedAnnotations = sortBy$1(annotations, function(annotation) {
98105
- return -getRangeLength(annotation);
98105
+ return -getRangeLength(annotation, sequenceLength);
98106
98106
  });
98107
98107
  annotationsToPass = sortedAnnotations.slice(0, max2).reduce(function(obj, item) {
98108
98108
  obj[item.id] = item;
@@ -117245,7 +117245,7 @@ function showFileDialog({ multiple = false, onSelect }) {
117245
117245
  input.click();
117246
117246
  }
117247
117247
  __name(showFileDialog, "showFileDialog");
117248
- const version = "0.8.38";
117248
+ const version = "0.8.39";
117249
117249
  const packageJson = {
117250
117250
  version
117251
117251
  };
@@ -124643,7 +124643,8 @@ const __LinearView = class __LinearView extends React.Component {
124643
124643
  const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
124644
124644
  const [annotations, paredDown] = pareDownAnnotations(
124645
124645
  sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
124646
- maxToShow
124646
+ maxToShow,
124647
+ sequenceData2.sequence ? sequenceData2.sequence.length : sequenceData2.size || 0
124647
124648
  );
124648
124649
  if (paredDown) {
124649
124650
  this.paredDownMessages.push(
@@ -124933,7 +124934,7 @@ const __LinearView = class __LinearView extends React.Component {
124933
124934
  fullSequence: sequenceData2.sequence,
124934
124935
  emptyText: getEmptyText({ sequenceData: sequenceData2, caretPosition: caretPosition2 }),
124935
124936
  tickSpacing: tickSpacingToUse,
124936
- annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && {
124937
+ annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && bpsPerRow >= 50 && {
124937
124938
  translations: false,
124938
124939
  primaryProteinSequence: false,
124939
124940
  reverseSequence: false,
@@ -126834,7 +126835,7 @@ function CircularView(props) {
126834
126835
  }
126835
126836
  const innerRadius = radius - 10;
126836
126837
  const initialRadius = radius;
126837
- const showSeq = isZoomedIn && rangeToShowLength < 140;
126838
+ const showSeq = rangeToShowLength < 140 && (isZoomedIn || sequenceLength < 50);
126838
126839
  const showSeqText = rangeToShowLength < 80;
126839
126840
  const layersToDraw = [
126840
126841
  { zIndex: 10, layerName: "sequenceChars" },
@@ -127087,7 +127088,7 @@ function CircularView(props) {
127087
127088
  }
127088
127089
  );
127089
127090
  const maxToShow = !isZoomedIn && ((maxAnnotationsToDisplay ? maxAnnotationsToDisplay[layerName] : limits[layerName]) || 50);
127090
- const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow) : [trimmedAnnotations];
127091
+ const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow, sequenceLength) : [trimmedAnnotations];
127091
127092
  if (paredDown) {
127092
127093
  paredDownMessages.push(
127093
127094
  getParedDownWarning({
package/index.es.js CHANGED
@@ -98078,13 +98078,13 @@ function addCustomEnzyme(newEnz) {
98078
98078
  );
98079
98079
  }
98080
98080
  __name(addCustomEnzyme, "addCustomEnzyme");
98081
- function pareDownAnnotations(annotations, max2) {
98081
+ function pareDownAnnotations(annotations, max2, sequenceLength) {
98082
98082
  let annotationsToPass = annotations;
98083
98083
  let paredDown = false;
98084
98084
  if (Object.keys(annotations).length > max2) {
98085
98085
  paredDown = true;
98086
98086
  const sortedAnnotations = sortBy$1(annotations, function(annotation) {
98087
- return -getRangeLength(annotation);
98087
+ return -getRangeLength(annotation, sequenceLength);
98088
98088
  });
98089
98089
  annotationsToPass = sortedAnnotations.slice(0, max2).reduce(function(obj, item) {
98090
98090
  obj[item.id] = item;
@@ -117227,7 +117227,7 @@ function showFileDialog({ multiple = false, onSelect }) {
117227
117227
  input.click();
117228
117228
  }
117229
117229
  __name(showFileDialog, "showFileDialog");
117230
- const version = "0.8.38";
117230
+ const version = "0.8.39";
117231
117231
  const packageJson = {
117232
117232
  version
117233
117233
  };
@@ -124625,7 +124625,8 @@ const __LinearView = class __LinearView extends React__default.Component {
124625
124625
  const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
124626
124626
  const [annotations, paredDown] = pareDownAnnotations(
124627
124627
  sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
124628
- maxToShow
124628
+ maxToShow,
124629
+ sequenceData2.sequence ? sequenceData2.sequence.length : sequenceData2.size || 0
124629
124630
  );
124630
124631
  if (paredDown) {
124631
124632
  this.paredDownMessages.push(
@@ -124915,7 +124916,7 @@ const __LinearView = class __LinearView extends React__default.Component {
124915
124916
  fullSequence: sequenceData2.sequence,
124916
124917
  emptyText: getEmptyText({ sequenceData: sequenceData2, caretPosition: caretPosition2 }),
124917
124918
  tickSpacing: tickSpacingToUse,
124918
- annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && {
124919
+ annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && bpsPerRow >= 50 && {
124919
124920
  translations: false,
124920
124921
  primaryProteinSequence: false,
124921
124922
  reverseSequence: false,
@@ -126816,7 +126817,7 @@ function CircularView(props) {
126816
126817
  }
126817
126818
  const innerRadius = radius - 10;
126818
126819
  const initialRadius = radius;
126819
- const showSeq = isZoomedIn && rangeToShowLength < 140;
126820
+ const showSeq = rangeToShowLength < 140 && (isZoomedIn || sequenceLength < 50);
126820
126821
  const showSeqText = rangeToShowLength < 80;
126821
126822
  const layersToDraw = [
126822
126823
  { zIndex: 10, layerName: "sequenceChars" },
@@ -127069,7 +127070,7 @@ function CircularView(props) {
127069
127070
  }
127070
127071
  );
127071
127072
  const maxToShow = !isZoomedIn && ((maxAnnotationsToDisplay ? maxAnnotationsToDisplay[layerName] : limits[layerName]) || 50);
127072
- const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow) : [trimmedAnnotations];
127073
+ const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow, sequenceLength) : [trimmedAnnotations];
127073
127074
  if (paredDown) {
127074
127075
  paredDownMessages.push(
127075
127076
  getParedDownWarning({
package/index.umd.js CHANGED
@@ -126244,13 +126244,13 @@ ${seq.sequence}
126244
126244
  );
126245
126245
  }
126246
126246
  __name(addCustomEnzyme, "addCustomEnzyme");
126247
- function pareDownAnnotations(annotations, max2) {
126247
+ function pareDownAnnotations(annotations, max2, sequenceLength) {
126248
126248
  let annotationsToPass = annotations;
126249
126249
  let paredDown = false;
126250
126250
  if (Object.keys(annotations).length > max2) {
126251
126251
  paredDown = true;
126252
126252
  const sortedAnnotations = sortBy$1(annotations, function(annotation) {
126253
- return -getRangeLength(annotation);
126253
+ return -getRangeLength(annotation, sequenceLength);
126254
126254
  });
126255
126255
  annotationsToPass = sortedAnnotations.slice(0, max2).reduce(function(obj, item) {
126256
126256
  obj[item.id] = item;
@@ -145343,7 +145343,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
145343
145343
  input.click();
145344
145344
  }
145345
145345
  __name(showFileDialog, "showFileDialog");
145346
- const version = "0.8.38";
145346
+ const version = "0.8.39";
145347
145347
  const packageJson = {
145348
145348
  version
145349
145349
  };
@@ -151139,7 +151139,8 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
151139
151139
  const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
151140
151140
  const [annotations, paredDown] = pareDownAnnotations(
151141
151141
  sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
151142
- maxToShow
151142
+ maxToShow,
151143
+ sequenceData2.sequence ? sequenceData2.sequence.length : sequenceData2.size || 0
151143
151144
  );
151144
151145
  if (paredDown) {
151145
151146
  this.paredDownMessages.push(
@@ -151429,7 +151430,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
151429
151430
  fullSequence: sequenceData2.sequence,
151430
151431
  emptyText: getEmptyText({ sequenceData: sequenceData2, caretPosition: caretPosition2 }),
151431
151432
  tickSpacing: tickSpacingToUse,
151432
- annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && {
151433
+ annotationVisibility: __spreadValues(__spreadValues(__spreadValues({}, rest.annotationVisibility), (!isLinViewZoomed || this.charWidth < 5) && bpsPerRow >= 50 && {
151433
151434
  translations: false,
151434
151435
  primaryProteinSequence: false,
151435
151436
  reverseSequence: false,
@@ -153330,7 +153331,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
153330
153331
  }
153331
153332
  const innerRadius = radius - 10;
153332
153333
  const initialRadius = radius;
153333
- const showSeq = isZoomedIn && rangeToShowLength < 140;
153334
+ const showSeq = rangeToShowLength < 140 && (isZoomedIn || sequenceLength < 50);
153334
153335
  const showSeqText = rangeToShowLength < 80;
153335
153336
  const layersToDraw = [
153336
153337
  { zIndex: 10, layerName: "sequenceChars" },
@@ -153583,7 +153584,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
153583
153584
  }
153584
153585
  );
153585
153586
  const maxToShow = !isZoomedIn && ((maxAnnotationsToDisplay ? maxAnnotationsToDisplay[layerName] : limits[layerName]) || 50);
153586
- const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow) : [trimmedAnnotations];
153587
+ const [trimmedAndParedAnns, paredDown] = maxToShow ? pareDownAnnotations(trimmedAnnotations, maxToShow, sequenceLength) : [trimmedAnnotations];
153587
153588
  if (paredDown) {
153588
153589
  paredDownMessages.push(
153589
153590
  getParedDownWarning({
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@teselagen/ove",
3
- "version": "0.8.38",
3
+ "version": "0.8.39",
4
4
  "main": "./src/index.js",
5
5
  "type": "module",
6
6
  "repository": "https://github.com/TeselaGen/tg-oss",
package/src/CircularView/index.js CHANGED
@@ -241,7 +241,8 @@ export function CircularView(props) {
241
241
  }
242
242
  const innerRadius = radius - 10;
243
243
  const initialRadius = radius;
244
- const showSeq = isZoomedIn && rangeToShowLength < 140;
244
+ const showSeq =
245
+ rangeToShowLength < 140 && (isZoomedIn || sequenceLength < 50);
245
246
  const showSeqText = rangeToShowLength < 80;
246
247
 
247
248
  //RENDERING CONCEPTS:
@@ -521,7 +522,7 @@ export function CircularView(props) {
521
522
  : limits[layerName]) ||
522
523
  50);
523
524
  const [trimmedAndParedAnns, paredDown] = maxToShow
524
- ? pareDownAnnotations(trimmedAnnotations, maxToShow)
525
+ ? pareDownAnnotations(trimmedAnnotations, maxToShow, sequenceLength)
525
526
  : [trimmedAnnotations];
526
527
 
527
528
  if (paredDown) {
package/src/LinearView/index.js CHANGED
@@ -118,7 +118,10 @@ class _LinearView extends React.Component {
118
118
  : limits[type]) || 50;
119
119
  const [annotations, paredDown] = pareDownAnnotations(
120
120
  sequenceData["filtered" + nameUpper] || sequenceData[type] || {},
121
- maxToShow
121
+ maxToShow,
122
+ sequenceData.sequence
123
+ ? sequenceData.sequence.length
124
+ : sequenceData.size || 0
122
125
  );
123
126
 
124
127
  if (paredDown) {
@@ -363,13 +366,14 @@ class _LinearView extends React.Component {
363
366
  tickSpacing: tickSpacingToUse,
364
367
  annotationVisibility: {
365
368
  ...rest.annotationVisibility,
366
- ...((!isLinViewZoomed || this.charWidth < 5) && {
367
- translations: false,
368
- primaryProteinSequence: false,
369
- reverseSequence: false,
370
- sequence: false,
371
- cutsitesInSequence: false
372
- }),
369
+ ...((!isLinViewZoomed || this.charWidth < 5) &&
370
+ bpsPerRow >= 50 && {
371
+ translations: false,
372
+ primaryProteinSequence: false,
373
+ reverseSequence: false,
374
+ sequence: false,
375
+ cutsitesInSequence: false
376
+ }),
373
377
  ...annotationVisibilityOverrides
374
378
  },
375
379
  ...RowItemProps
package/src/utils/editorUtils.js CHANGED
@@ -111,13 +111,13 @@ export function addCustomEnzyme(newEnz) {
111
111
  );
112
112
  }
113
113
 
114
- export function pareDownAnnotations(annotations, max) {
114
+ export function pareDownAnnotations(annotations, max, sequenceLength) {
115
115
  let annotationsToPass = annotations;
116
116
  let paredDown = false;
117
117
  if (Object.keys(annotations).length > max) {
118
118
  paredDown = true;
119
119
  const sortedAnnotations = sortBy(annotations, function (annotation) {
120
- return -getRangeLength(annotation);
120
+ return -getRangeLength(annotation, sequenceLength);
121
121
  });
122
122
  annotationsToPass = sortedAnnotations.slice(0, max).reduce(function (
123
123
  obj,
package/utils/editorUtils.d.ts CHANGED
@@ -21,7 +21,7 @@ export function getEmptyText({ sequenceData, caretPosition }: {
21
21
  export function tryToRefocusEditor(): void;
22
22
  export function getCustomEnzymes(): any;
23
23
  export function addCustomEnzyme(newEnz: any): void;
24
- export function pareDownAnnotations(annotations: any, max: any): any[];
24
+ export function pareDownAnnotations(annotations: any, max: any, sequenceLength: any): any[];
25
25
  export function getParedDownWarning({ nameUpper, maxToShow, isAdjustable }: {
26
26
  nameUpper: any;
27
27
  maxToShow: any;