@teselagen/ove 0.8.24 → 0.8.25

package/index.cjs.js

@@ -84059,6 +84059,15 @@ function getAnnotationsBetweenRange(annotationsToBeAdjusted, range2, maxLength,
     }
     const overlaps = getZeroedRangeOverlaps(annotation, range2, maxLength).map(
       (overlap) => {
+        const allLocations = annotation.locations;
+        if (allLocations && allLocations.length) {
+          const newLocations = allLocations.filter((loc) => {
+            return isRangeWithinRange(loc, overlap, maxLength);
+          });
+          return assignIn({}, annotation, overlap, {
+            locations: newLocations
+          });
+        }
         return assignIn({}, annotation, overlap);
       }
     );
@@ -116977,7 +116986,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.23";
+const version = "0.8.25";
 const packageJson = {
   version
 };
@@ -124356,28 +124365,30 @@ const __LinearView = class __LinearView extends React.Component {
         maxAnnotationsToDisplay
       } = this.props;
       this.paredDownMessages = [];
-      const paredDownSeqData = ["parts", "features", "cutsites"].reduce(
-        (acc, type2) => {
-          const nameUpper = startCase(type2);
-          const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
-          const [annotations, paredDown] = pareDownAnnotations(
-            sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
-            maxToShow
+      const paredDownSeqData = [
+        "parts",
+        "features",
+        "cutsites",
+        "primers"
+      ].reduce((acc, type2) => {
+        const nameUpper = startCase(type2);
+        const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
+        const [annotations, paredDown] = pareDownAnnotations(
+          sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
+          maxToShow
+        );
+        if (paredDown) {
+          this.paredDownMessages.push(
+            getParedDownWarning({
+              nameUpper,
+              isAdjustable: !maxAnnotationsToDisplay,
+              maxToShow
+            })
           );
-          if (paredDown) {
-            this.paredDownMessages.push(
-              getParedDownWarning({
-                nameUpper,
-                isAdjustable: !maxAnnotationsToDisplay,
-                maxToShow
-              })
-            );
-          }
-          acc[type2] = annotations;
-          return acc;
-        },
-        {}
-      );
+        }
+        acc[type2] = annotations;
+        return acc;
+      }, {});
       this.rowData = prepareRowData(
         __spreadValues(__spreadValues({}, sequenceData2), paredDownSeqData),
         sequenceData2.sequence ? sequenceData2.sequence.length : 0

package/index.es.js

@@ -84041,6 +84041,15 @@ function getAnnotationsBetweenRange(annotationsToBeAdjusted, range2, maxLength,
     }
     const overlaps = getZeroedRangeOverlaps(annotation, range2, maxLength).map(
       (overlap) => {
+        const allLocations = annotation.locations;
+        if (allLocations && allLocations.length) {
+          const newLocations = allLocations.filter((loc) => {
+            return isRangeWithinRange(loc, overlap, maxLength);
+          });
+          return assignIn({}, annotation, overlap, {
+            locations: newLocations
+          });
+        }
         return assignIn({}, annotation, overlap);
       }
     );
@@ -116959,7 +116968,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.23";
+const version = "0.8.25";
 const packageJson = {
   version
 };
@@ -124338,28 +124347,30 @@ const __LinearView = class __LinearView extends React__default.Component {
         maxAnnotationsToDisplay
       } = this.props;
       this.paredDownMessages = [];
-      const paredDownSeqData = ["parts", "features", "cutsites"].reduce(
-        (acc, type2) => {
-          const nameUpper = startCase(type2);
-          const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
-          const [annotations, paredDown] = pareDownAnnotations(
-            sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
-            maxToShow
+      const paredDownSeqData = [
+        "parts",
+        "features",
+        "cutsites",
+        "primers"
+      ].reduce((acc, type2) => {
+        const nameUpper = startCase(type2);
+        const maxToShow = (maxAnnotationsToDisplay ? maxAnnotationsToDisplay[type2] : limits[type2]) || 50;
+        const [annotations, paredDown] = pareDownAnnotations(
+          sequenceData2["filtered" + nameUpper] || sequenceData2[type2] || {},
+          maxToShow
+        );
+        if (paredDown) {
+          this.paredDownMessages.push(
+            getParedDownWarning({
+              nameUpper,
+              isAdjustable: !maxAnnotationsToDisplay,
+              maxToShow
+            })
           );
-          if (paredDown) {
-            this.paredDownMessages.push(
-              getParedDownWarning({
-                nameUpper,
-                isAdjustable: !maxAnnotationsToDisplay,
-                maxToShow
-              })
-            );
-          }
-          acc[type2] = annotations;
-          return acc;
-        },
-        {}
-      );
+        }
+        acc[type2] = annotations;
+        return acc;
+      }, {});
       this.rowData = prepareRowData(
         __spreadValues(__spreadValues({}, sequenceData2), paredDownSeqData),
         sequenceData2.sequence ? sequenceData2.sequence.length : 0

package/package.json

@@ -1,8 +1,9 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.8.24",
+  "version": "0.8.25",
   "main": "./src/index.js",
   "type": "module",
+  "repository": "https://github.com/TeselaGen/tg-oss",
   "exports": {
     ".": {
       "import": "./index.es.js",
@@ -14,12 +15,12 @@
     "@blueprintjs/core": "3.54.0",
     "@hello-pangea/dnd": "16.2.0",
     "@risingstack/react-easy-state": "^6.3.0",
-    "@teselagen/bio-parsers": "0.4.32",
+    "@teselagen/bio-parsers": "0.4.33",
     "@teselagen/file-utils": "0.3.20",
-    "@teselagen/range-utils": "0.3.13",
+    "@teselagen/range-utils": "0.3.19",
     "@teselagen/react-list": "0.8.18",
-    "@teselagen/sequence-utils": "0.3.37",
-    "@teselagen/ui": "0.10.15",
+    "@teselagen/sequence-utils": "0.3.41",
+    "@teselagen/ui": "0.10.16",
     "@use-gesture/react": "10.3.0",
     "biomsa": "^0.2.4",
     "classnames": "^2.3.2",
@@ -62,6 +63,5 @@
     "to-regex-range": "5.0.1",
     "use-debounce": "^8.0.4",
     "validate.io-nonnegative-integer-array": "^1.0.1"
-  },
-  "license": "MIT"
-}
+  }
+}

package/src/LinearView/index.js

@@ -104,32 +104,34 @@ class _LinearView extends React.Component {
     } = this.props;
     // if (!isEqual(sequenceData, this.oldSeqData)) {
     this.paredDownMessages = [];
-    const paredDownSeqData = ["parts", "features", "cutsites"].reduce(
-      (acc, type) => {
-        const nameUpper = startCase(type);
-        const maxToShow =
-          (maxAnnotationsToDisplay
-            ? maxAnnotationsToDisplay[type]
-            : limits[type]) || 50;
-        const [annotations, paredDown] = pareDownAnnotations(
-          sequenceData["filtered" + nameUpper] || sequenceData[type] || {},
-          maxToShow
-        );
+    const paredDownSeqData = [
+      "parts",
+      "features",
+      "cutsites",
+      "primers"
+    ].reduce((acc, type) => {
+      const nameUpper = startCase(type);
+      const maxToShow =
+        (maxAnnotationsToDisplay
+          ? maxAnnotationsToDisplay[type]
+          : limits[type]) || 50;
+      const [annotations, paredDown] = pareDownAnnotations(
+        sequenceData["filtered" + nameUpper] || sequenceData[type] || {},
+        maxToShow
+      );
 
-        if (paredDown) {
-          this.paredDownMessages.push(
-            getParedDownWarning({
-              nameUpper,
-              isAdjustable: !maxAnnotationsToDisplay,
-              maxToShow
-            })
-          );
-        }
-        acc[type] = annotations;
-        return acc;
-      },
-      {}
-    );
+      if (paredDown) {
+        this.paredDownMessages.push(
+          getParedDownWarning({
+            nameUpper,
+            isAdjustable: !maxAnnotationsToDisplay,
+            maxToShow
+          })
+        );
+      }
+      acc[type] = annotations;
+      return acc;
+    }, {});
     this.rowData = prepareRowData(
       {
         ...sequenceData,