@teselagen/ove 0.8.21 → 0.8.22

package/index.cjs.js

@@ -97290,7 +97290,7 @@ const temporaryAnnotations = createMergedDefaultStateReducer(
     features: {},
     primers: {},
     parts: {},
-    selectionLayer: {}
+    searchLayers: []
   }
 );
 const temporaryAnnotations$1 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.defineProperty({
@@ -98093,9 +98093,10 @@ function translationsRawSelector(sequenceData2) {
 }
 __name(translationsRawSelector, "translationsRawSelector");
 const translationsRawSelector$1 = createSelector(sequenceDataSelector, translationsRawSelector);
-function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed) {
+function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed, tempSearchLayers = []) {
+  const toReturn = [...tempSearchLayers];
   if (!searchString || !isOpen) {
-    return [];
+    return toReturn;
   }
   if (isProtein2) {
     const searchingDna = dnaOrAA === "DNA";
@@ -98112,7 +98113,7 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
     ).sort(({ start: start2 }, { start: start22 }) => {
       return start2 - start22;
     });
-    return searchingDna ? matches2 : matches2.map((_a2) => {
+    const r2 = searchingDna ? matches2 : matches2.map((_a2) => {
       var _b2 = _a2, { start: start2, end: end2 } = _b2, rest = __objRest(_b2, ["start", "end"]);
       return __spreadProps(__spreadValues({}, rest), {
         isSearchLayer: true,
@@ -98120,6 +98121,10 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
         end: end2 * 3 + 2
       });
     });
+    return [
+      ...toReturn,
+      ...r2
+    ];
   }
   if (dnaOrAA === "DNA" && ambiguousOrLiteral === "LITERAL" && mismatchesAllowed > 0) {
     const approxMatches = findApproxMatches(
@@ -98137,9 +98142,9 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
       isSearchLayer: true,
       forward: true
     })).sort((a2, b3) => a2.start - b3.start);
-    return matches2.map((match) => __spreadProps(__spreadValues({}, match), {
+    return [...toReturn, ...matches2.map((match) => __spreadProps(__spreadValues({}, match), {
       className: "veSearchLayer"
-    }));
+    }))];
   }
   const matches = findSequenceMatches(sequence2, searchString, {
     isCircular,
@@ -98149,11 +98154,11 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
   }).sort(({ start: start2 }, { start: start22 }) => {
     return start2 - start22;
   });
-  return matches.map((match) => __spreadProps(__spreadValues({}, match), {
+  return [...toReturn, ...matches.map((match) => __spreadProps(__spreadValues({}, match), {
     forward: !match.bottomStrand,
     className: "veSearchLayer " + (match.bottomStrand ? " veSearchLayerBottomStrand" : ""),
     isSearchLayer: true
-  }));
+  }))];
 }
 __name(searchLayersSelector, "searchLayersSelector");
 const searchLayersSelector$1 = createSelector(
@@ -98166,6 +98171,7 @@ const searchLayersSelector$1 = createSelector(
   (state2) => state2.sequenceData.isProtein,
   (state2) => state2.sequenceData.proteinSequence,
   (state2) => state2.findTool && state2.findTool.mismatchesAllowed,
+  (state2) => state2.temporaryAnnotations.searchLayers,
   searchLayersSelector
 );
 const translationSearchMatchesSelector = createSelector(
@@ -116931,7 +116937,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.20";
+const version = "0.8.21";
 const packageJson = {
   version
 };

package/index.es.js

@@ -97272,7 +97272,7 @@ const temporaryAnnotations = createMergedDefaultStateReducer(
     features: {},
     primers: {},
     parts: {},
-    selectionLayer: {}
+    searchLayers: []
   }
 );
 const temporaryAnnotations$1 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.defineProperty({
@@ -98075,9 +98075,10 @@ function translationsRawSelector(sequenceData2) {
 }
 __name(translationsRawSelector, "translationsRawSelector");
 const translationsRawSelector$1 = createSelector(sequenceDataSelector, translationsRawSelector);
-function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed) {
+function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed, tempSearchLayers = []) {
+  const toReturn = [...tempSearchLayers];
   if (!searchString || !isOpen) {
-    return [];
+    return toReturn;
   }
   if (isProtein2) {
     const searchingDna = dnaOrAA === "DNA";
@@ -98094,7 +98095,7 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
     ).sort(({ start: start2 }, { start: start22 }) => {
       return start2 - start22;
     });
-    return searchingDna ? matches2 : matches2.map((_a2) => {
+    const r2 = searchingDna ? matches2 : matches2.map((_a2) => {
       var _b2 = _a2, { start: start2, end: end2 } = _b2, rest = __objRest(_b2, ["start", "end"]);
       return __spreadProps(__spreadValues({}, rest), {
         isSearchLayer: true,
@@ -98102,6 +98103,10 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
         end: end2 * 3 + 2
       });
     });
+    return [
+      ...toReturn,
+      ...r2
+    ];
   }
   if (dnaOrAA === "DNA" && ambiguousOrLiteral === "LITERAL" && mismatchesAllowed > 0) {
     const approxMatches = findApproxMatches(
@@ -98119,9 +98124,9 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
       isSearchLayer: true,
       forward: true
     })).sort((a2, b3) => a2.start - b3.start);
-    return matches2.map((match) => __spreadProps(__spreadValues({}, match), {
+    return [...toReturn, ...matches2.map((match) => __spreadProps(__spreadValues({}, match), {
       className: "veSearchLayer"
-    }));
+    }))];
   }
   const matches = findSequenceMatches(sequence2, searchString, {
     isCircular,
@@ -98131,11 +98136,11 @@ function searchLayersSelector(sequence2, isCircular, isOpen, searchString, ambig
   }).sort(({ start: start2 }, { start: start22 }) => {
     return start2 - start22;
   });
-  return matches.map((match) => __spreadProps(__spreadValues({}, match), {
+  return [...toReturn, ...matches.map((match) => __spreadProps(__spreadValues({}, match), {
     forward: !match.bottomStrand,
     className: "veSearchLayer " + (match.bottomStrand ? " veSearchLayerBottomStrand" : ""),
     isSearchLayer: true
-  }));
+  }))];
 }
 __name(searchLayersSelector, "searchLayersSelector");
 const searchLayersSelector$1 = createSelector(
@@ -98148,6 +98153,7 @@ const searchLayersSelector$1 = createSelector(
   (state2) => state2.sequenceData.isProtein,
   (state2) => state2.sequenceData.proteinSequence,
   (state2) => state2.findTool && state2.findTool.mismatchesAllowed,
+  (state2) => state2.temporaryAnnotations.searchLayers,
   searchLayersSelector
 );
 const translationSearchMatchesSelector = createSelector(
@@ -116913,7 +116919,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.20";
+const version = "0.8.21";
 const packageJson = {
   version
 };

package/index.umd.js

@@ -125438,7 +125438,7 @@ ${seq.sequence}
       features: {},
       primers: {},
       parts: {},
-      selectionLayer: {}
+      searchLayers: []
     }
   );
   const temporaryAnnotations$1 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.defineProperty({
@@ -126241,9 +126241,10 @@ ${seq.sequence}
   }
   __name(translationsRawSelector, "translationsRawSelector");
   const translationsRawSelector$1 = createSelector(sequenceDataSelector, translationsRawSelector);
-  function searchLayersSelector(sequence2, isCircular, isOpen2, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed) {
+  function searchLayersSelector(sequence2, isCircular, isOpen2, searchString, ambiguousOrLiteral, dnaOrAA, isProtein2, proteinSequence, mismatchesAllowed, tempSearchLayers = []) {
+    const toReturn = [...tempSearchLayers];
     if (!searchString || !isOpen2) {
-      return [];
+      return toReturn;
     }
     if (isProtein2) {
       const searchingDna = dnaOrAA === "DNA";
@@ -126260,7 +126261,7 @@ ${seq.sequence}
       ).sort(({ start: start2 }, { start: start22 }) => {
         return start2 - start22;
       });
-      return searchingDna ? matches2 : matches2.map((_a2) => {
+      const r2 = searchingDna ? matches2 : matches2.map((_a2) => {
         var _b2 = _a2, { start: start2, end: end2 } = _b2, rest = __objRest(_b2, ["start", "end"]);
         return __spreadProps(__spreadValues({}, rest), {
           isSearchLayer: true,
@@ -126268,6 +126269,10 @@ ${seq.sequence}
           end: end2 * 3 + 2
         });
       });
+      return [
+        ...toReturn,
+        ...r2
+      ];
     }
     if (dnaOrAA === "DNA" && ambiguousOrLiteral === "LITERAL" && mismatchesAllowed > 0) {
       const approxMatches = findApproxMatches(
@@ -126285,9 +126290,9 @@ ${seq.sequence}
         isSearchLayer: true,
         forward: true
       })).sort((a2, b3) => a2.start - b3.start);
-      return matches2.map((match) => __spreadProps(__spreadValues({}, match), {
+      return [...toReturn, ...matches2.map((match) => __spreadProps(__spreadValues({}, match), {
         className: "veSearchLayer"
-      }));
+      }))];
     }
     const matches = findSequenceMatches(sequence2, searchString, {
       isCircular,
@@ -126297,11 +126302,11 @@ ${seq.sequence}
     }).sort(({ start: start2 }, { start: start22 }) => {
       return start2 - start22;
     });
-    return matches.map((match) => __spreadProps(__spreadValues({}, match), {
+    return [...toReturn, ...matches.map((match) => __spreadProps(__spreadValues({}, match), {
       forward: !match.bottomStrand,
       className: "veSearchLayer " + (match.bottomStrand ? " veSearchLayerBottomStrand" : ""),
       isSearchLayer: true
-    }));
+    }))];
   }
   __name(searchLayersSelector, "searchLayersSelector");
   const searchLayersSelector$1 = createSelector(
@@ -126314,6 +126319,7 @@ ${seq.sequence}
     (state2) => state2.sequenceData.isProtein,
     (state2) => state2.sequenceData.proteinSequence,
     (state2) => state2.findTool && state2.findTool.mismatchesAllowed,
+    (state2) => state2.temporaryAnnotations.searchLayers,
     searchLayersSelector
   );
   const translationSearchMatchesSelector = createSelector(
@@ -145029,7 +145035,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
     input.click();
   }
   __name(showFileDialog, "showFileDialog");
-  const version = "0.8.20";
+  const version = "0.8.21";
   const packageJson = {
     version
   };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.8.21",
+  "version": "0.8.22",
   "main": "./src/index.js",
   "type": "module",
   "exports": {

package/selectors/searchLayersSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any[]) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any, args_5: any, args_6: any, args_7: any, args_8: any) => any[], {
+declare const _default: ((state: any, ...params: any[]) => any[]) & import('reselect').OutputSelectorFields<(...args: readonly unknown[]) => any[], {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/src/redux/temporaryAnnotations.js

@@ -18,6 +18,6 @@ export default createMergedDefaultStateReducer(
     features: {},
     primers: {},
     parts: {},
-    selectionLayer: {}
+    searchLayers: []
   }
 );

package/src/selectors/searchLayersSelector.js

@@ -15,10 +15,12 @@ function searchLayersSelector(
   dnaOrAA,
   isProtein,
   proteinSequence,
-  mismatchesAllowed
+  mismatchesAllowed,
+  tempSearchLayers = []
 ) {
+  const toReturn = [...tempSearchLayers]
   if (!searchString || !isOpen) {
-    return [];
+    return toReturn;
   }
   if (isProtein) {
     const searchingDna = dnaOrAA === "DNA";
@@ -35,7 +37,7 @@ function searchLayersSelector(
     ).sort(({ start }, { start: start2 }) => {
       return start - start2;
     });
-    return searchingDna
+    const r = searchingDna
       ? matches
       : matches.map(({ start, end, ...rest }) => ({
           ...rest,
@@ -43,6 +45,10 @@ function searchLayersSelector(
           start: start * 3,
           end: end * 3 + 2
         }));
+    return [
+      ...toReturn,
+      ...r
+    ];
   }
 
   // Use findApproxMatches when literal matching DNA with mismatches allowed
@@ -69,11 +75,10 @@ function searchLayersSelector(
         forward: true
       }))
       .sort((a, b) => a.start - b.start);
-
-    return matches.map(match => ({
+    return [...toReturn, ...matches.map(match => ({
       ...match,
       className: "veSearchLayer"
-    }));
+    }))];
   }
 
   // Use regular findSequenceMatches for all other cases
@@ -85,14 +90,14 @@ function searchLayersSelector(
   }).sort(({ start }, { start: start2 }) => {
     return start - start2;
   });
-  return matches.map(match => ({
+  return [...toReturn, ...matches.map(match => ({
     ...match,
     forward: !match.bottomStrand,
     className:
       "veSearchLayer " +
       (match.bottomStrand ? " veSearchLayerBottomStrand" : ""),
     isSearchLayer: true
-  }));
+  }))];
 }
 
 export default createSelector(
@@ -105,5 +110,6 @@ export default createSelector(
   state => state.sequenceData.isProtein,
   state => state.sequenceData.proteinSequence,
   state => state.findTool && state.findTool.mismatchesAllowed,
+  state => state.temporaryAnnotations.searchLayers,
   searchLayersSelector
 );