@teselagen/ove 0.8.11 → 0.8.13

package/index.cjs.js

@@ -56614,10 +56614,7 @@ const DataTable = /* @__PURE__ */ __name((_w) => {
     });
   }
   const __schema = useDeepEqualMemo(_schema);
-  const convertedSchema = React.useMemo(
-    () => convertSchema(__schema),
-    [__schema]
-  );
+  const convertedSchema = React.useMemo(() => convertSchema(__schema), [__schema]);
   if (isLocalCall) {
     if (!noForm && (!formName || formName === "tgDataTable")) {
       throw new Error(
@@ -85561,6 +85558,11 @@ function genbankToJson(string2, options = {}) {
       feat.arrowheadType = feat.notes.direction[0].toUpperCase() === "BOTH" ? "BOTH" : feat.notes.direction[0].toUpperCase() === "NONE" ? "NONE" : void 0;
       delete feat.notes.direction;
     }
+    if (feat.locations && feat.locations.length > 1 && feat.locations[0].start > feat.locations[feat.locations.length - 1].end) {
+      if (parsedSequence.circular === void 0) {
+        parsedSequence.circular = true;
+      }
+    }
     if (parsedSequence.circular) {
       const { inclusive1BasedStart: inclusive1BasedStart2, inclusive1BasedEnd: inclusive1BasedEnd2 } = options2;
       feat.locations = wrapOriginSpanningFeatures(
@@ -85569,6 +85571,8 @@ function genbankToJson(string2, options = {}) {
         inclusive1BasedStart2,
         inclusive1BasedEnd2
       );
+    } else if (feat.locations && feat.locations.length > 1) {
+      feat.locations.sort((a2, b3) => a2.start - b3.start);
     }
     return feat;
   }
@@ -116634,7 +116638,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.10";
+const version = "0.8.12";
 const packageJson = {
   version
 };
@@ -121429,9 +121433,6 @@ function VectorInteractionHOC(Component) {
           disableBpEditing,
           maxInsertSize,
           showAminoAcidUnitAsCodon
-          // updateSequenceData,
-          // wrappedInsertSequenceDataAtPositionOrRange
-          // handleInsert
         } = this.props;
         const sequenceLength = sequenceData2.sequence.length;
         const isReplace = selectionLayer2.start > -1;
@@ -140119,10 +140120,10 @@ const AlignmentView$1 = compose(
           togglableAlignmentAnnotationSettings[annotation] = alignmentAnnotationVisibility[annotation];
         }
       });
-      const tracks = parseTracks(alignmentTracks);
-      const labileSites = getLabileSites(tracks, 0.5);
       const annotationsWithCounts = [];
       if (alignmentTracks) {
+        const tracks = parseTracks(alignmentTracks);
+        const labileSites = getLabileSites(tracks, 0.5);
         let totalNumOfFeatures = 0;
         let totalNumOfParts = 0;
         alignmentTracks.forEach((seq) => {

package/index.es.js

@@ -56596,10 +56596,7 @@ const DataTable = /* @__PURE__ */ __name((_w) => {
     });
   }
   const __schema = useDeepEqualMemo(_schema);
-  const convertedSchema = useMemo$1(
-    () => convertSchema(__schema),
-    [__schema]
-  );
+  const convertedSchema = useMemo$1(() => convertSchema(__schema), [__schema]);
   if (isLocalCall) {
     if (!noForm && (!formName || formName === "tgDataTable")) {
       throw new Error(
@@ -85543,6 +85540,11 @@ function genbankToJson(string2, options = {}) {
       feat.arrowheadType = feat.notes.direction[0].toUpperCase() === "BOTH" ? "BOTH" : feat.notes.direction[0].toUpperCase() === "NONE" ? "NONE" : void 0;
       delete feat.notes.direction;
     }
+    if (feat.locations && feat.locations.length > 1 && feat.locations[0].start > feat.locations[feat.locations.length - 1].end) {
+      if (parsedSequence.circular === void 0) {
+        parsedSequence.circular = true;
+      }
+    }
     if (parsedSequence.circular) {
       const { inclusive1BasedStart: inclusive1BasedStart2, inclusive1BasedEnd: inclusive1BasedEnd2 } = options2;
       feat.locations = wrapOriginSpanningFeatures(
@@ -85551,6 +85553,8 @@ function genbankToJson(string2, options = {}) {
         inclusive1BasedStart2,
         inclusive1BasedEnd2
       );
+    } else if (feat.locations && feat.locations.length > 1) {
+      feat.locations.sort((a2, b3) => a2.start - b3.start);
     }
     return feat;
   }
@@ -116616,7 +116620,7 @@ function showFileDialog({ multiple = false, onSelect }) {
   input.click();
 }
 __name(showFileDialog, "showFileDialog");
-const version = "0.8.10";
+const version = "0.8.12";
 const packageJson = {
   version
 };
@@ -121411,9 +121415,6 @@ function VectorInteractionHOC(Component2) {
           disableBpEditing,
           maxInsertSize,
           showAminoAcidUnitAsCodon
-          // updateSequenceData,
-          // wrappedInsertSequenceDataAtPositionOrRange
-          // handleInsert
         } = this.props;
         const sequenceLength = sequenceData2.sequence.length;
         const isReplace = selectionLayer2.start > -1;
@@ -140101,10 +140102,10 @@ const AlignmentView$1 = compose(
           togglableAlignmentAnnotationSettings[annotation] = alignmentAnnotationVisibility[annotation];
         }
       });
-      const tracks = parseTracks(alignmentTracks);
-      const labileSites = getLabileSites(tracks, 0.5);
       const annotationsWithCounts = [];
       if (alignmentTracks) {
+        const tracks = parseTracks(alignmentTracks);
+        const labileSites = getLabileSites(tracks, 0.5);
         let totalNumOfFeatures = 0;
         let totalNumOfParts = 0;
         alignmentTracks.forEach((seq) => {

package/index.umd.js

@@ -85645,10 +85645,7 @@ ${latestSubscriptionCallbackError.current.stack}
       });
     }
     const __schema = useDeepEqualMemo(_schema);
-    const convertedSchema = reactExports.useMemo(
-      () => convertSchema(__schema),
-      [__schema]
-    );
+    const convertedSchema = reactExports.useMemo(() => convertSchema(__schema), [__schema]);
     if (isLocalCall) {
       if (!noForm && (!formName || formName === "tgDataTable")) {
         throw new Error(
@@ -114464,6 +114461,11 @@ ${latestSubscriptionCallbackError.current.stack}
         feat.arrowheadType = feat.notes.direction[0].toUpperCase() === "BOTH" ? "BOTH" : feat.notes.direction[0].toUpperCase() === "NONE" ? "NONE" : void 0;
         delete feat.notes.direction;
       }
+      if (feat.locations && feat.locations.length > 1 && feat.locations[0].start > feat.locations[feat.locations.length - 1].end) {
+        if (parsedSequence.circular === void 0) {
+          parsedSequence.circular = true;
+        }
+      }
       if (parsedSequence.circular) {
         const { inclusive1BasedStart: inclusive1BasedStart2, inclusive1BasedEnd: inclusive1BasedEnd2 } = options2;
         feat.locations = wrapOriginSpanningFeatures(
@@ -114472,6 +114474,8 @@ ${latestSubscriptionCallbackError.current.stack}
           inclusive1BasedStart2,
           inclusive1BasedEnd2
         );
+      } else if (feat.locations && feat.locations.length > 1) {
+        feat.locations.sort((a2, b3) => a2.start - b3.start);
       }
       return feat;
     }
@@ -144732,7 +144736,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
     input.click();
   }
   __name(showFileDialog, "showFileDialog");
-  const version = "0.8.10";
+  const version = "0.8.12";
   const packageJson = {
     version
   };
@@ -147925,9 +147929,6 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
             disableBpEditing,
             maxInsertSize,
             showAminoAcidUnitAsCodon
-            // updateSequenceData,
-            // wrappedInsertSequenceDataAtPositionOrRange
-            // handleInsert
           } = this.props;
           const sequenceLength = sequenceData2.sequence.length;
           const isReplace = selectionLayer2.start > -1;
@@ -166615,10 +166616,10 @@ ${seqDataToCopy}\r
             togglableAlignmentAnnotationSettings[annotation] = alignmentAnnotationVisibility[annotation];
           }
         });
-        const tracks = parseTracks(alignmentTracks);
-        const labileSites = getLabileSites(tracks, 0.5);
         const annotationsWithCounts = [];
         if (alignmentTracks) {
+          const tracks = parseTracks(alignmentTracks);
+          const labileSites = getLabileSites(tracks, 0.5);
           let totalNumOfFeatures = 0;
           let totalNumOfParts = 0;
           alignmentTracks.forEach((seq) => {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.8.11",
+  "version": "0.8.13",
   "main": "./src/index.js",
   "type": "module",
   "exports": {

package/src/AlignmentView/index.js

@@ -1970,11 +1970,10 @@ export default compose(
         }
       });
 
-      const tracks = parseTracks(alignmentTracks);
-      const labileSites = getLabileSites(tracks, 0.5);
-
       const annotationsWithCounts = [];
       if (alignmentTracks) {
+        const tracks = parseTracks(alignmentTracks);
+        const labileSites = getLabileSites(tracks, 0.5);
         let totalNumOfFeatures = 0;
         let totalNumOfParts = 0;
         alignmentTracks.forEach(seq => {

package/src/redux/restrictionEnzymes.js

@@ -19,17 +19,6 @@ export const filteredRestrictionEnzymesAdd = createAction(
 // Reducer
 // ------------------------------------
 const defaultInitialState = [specialCutsiteFilterOptions.single];
-// let initialState = defaultInitialState;
-// const localDefault = window.localStorage.getItem("tgInitialCutsiteFilter");
-
-// if (localDefault) {
-//   try {
-//     initialState = JSON.parse(localDefault);
-//     if (!Array.isArray(initialState)) throw new Error("Must be an array");
-//   } catch (e) {
-//     initialState = defaultInitialState;
-//   }
-// }
 
 export default combineReducers({
   //filteredRestrictionEnzymes refer to the enzymes actively included in the react-select filter component

package/src/withEditorInteractions/index.js

@@ -405,9 +405,6 @@ function VectorInteractionHOC(Component /* options */) {
         disableBpEditing,
         maxInsertSize,
         showAminoAcidUnitAsCodon
-        // updateSequenceData,
-        // wrappedInsertSequenceDataAtPositionOrRange
-        // handleInsert
       } = this.props;
       const sequenceLength = sequenceData.sequence.length;
       const isReplace = selectionLayer.start > -1;