@teselagen/ove 0.7.24 → 0.7.25

package/commands/index.d.ts

@@ -273,7 +273,7 @@ export namespace commandDefs {
         export { hotkey_9 as hotkey };
     }
     namespace createNewFromSubsequence {
-        let name_10: string;
+        export function name_10(props: any): "Create New AA Sequence From Selection" | "Create New Oligo From Selection" | "Create New DNA Sequence From Selection";
         export { name_10 as name };
         export function isDisabled_8(props: any): boolean;
         export { isDisabled_8 as isDisabled };

package/index.cjs.js

@@ -123051,7 +123051,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.7.23";
+const version = "0.7.24";
 const main = "./src/index.js";
 const type = "module";
 const exports$1 = {
@@ -123965,7 +123965,7 @@ const fileCommandDefs = __spreadValues(__spreadProps(__spreadValues({
     handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile(isProtein(props) ? "genpept" : "genbank"), "handler")
   },
   exportDNASequenceAsFasta: {
-    name: /* @__PURE__ */ __name((props) => `Download ${props.sequenceData.isProtein ? "DNA " : ""}FASTA File`, "name"),
+    name: /* @__PURE__ */ __name((props) => `Download ${isProtein(props) ? "DNA " : ""}FASTA File`, "name"),
     isHidden: /* @__PURE__ */ __name((props) => !props.sequenceData.sequence, "isHidden"),
     handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile("fasta", {
       sequence: props.sequenceData.sequence,
@@ -124096,7 +124096,7 @@ const editCommandDefs = __spreadValues(__spreadProps(__spreadValues({
     hotkey: "mod+x"
   },
   createNewFromSubsequence: {
-    name: "New Sequence From Selected Range",
+    name: /* @__PURE__ */ __name((props) => isProtein(props) ? "Create New AA Sequence From Selection" : isOligo(props) ? "Create New Oligo From Selection" : "Create New DNA Sequence From Selection", "name"),
     isDisabled: /* @__PURE__ */ __name((props) => props.sequenceLength === 0 || props.selectionLayer.start === -1, "isDisabled"),
     isHidden: /* @__PURE__ */ __name((props) => !props.onCreateNewFromSubsequence, "isHidden"),
     handler: /* @__PURE__ */ __name((props) => {
@@ -124732,11 +124732,6 @@ const annotationToggleCommandDefs = {};
       return !props.annotationVisibility.features && "Features must be visible to view their translations" || !props.annotationVisibility.translations && "Translations must be visible to view CDS feature translations";
     }, "isDisabled")
   },
-  // {
-  //   type: "aminoAcidNumbers",
-  //   isHidden: (p, c) =>
-  //     (c.isDnaMenu && p.isProtein) || (!c.isDnaMenu && !p.isProtein)
-  // },
   { type: "aminoAcidNumbers" },
   "axisNumbers",
   {
@@ -124811,7 +124806,7 @@ const additionalAnnotationCommandsDefs = {
   showAll: {
     handler: /* @__PURE__ */ __name((props) => {
       annotationTypes.forEach((type2) => {
-        if (props.isProtein) {
+        if (isProtein(props)) {
           if (type2 === "translations" || type2 === "cutsites")
             return props.annotationVisibilityHide(type2);
         }
@@ -155283,6 +155278,7 @@ exports.actions = actions;
 exports.addAlignment = addAlignment;
 exports.connectToEditor = connectToEditor;
 exports.createVectorEditor = createVectorEditor;
+exports.divideBy3 = divideBy3;
 exports.getOveHotkeyDefs = getOveHotkeyDefs;
 exports.getRangeAnglesSpecial = getRangeAnglesSpecial;
 exports.getStructuredBases = getStructuredBases;

package/index.d.ts

@@ -17,6 +17,7 @@ export { default as EnzymeViewer } from './EnzymeViewer';
 export { default as AlignmentView } from './AlignmentView';
 export { default as getOveHotkeyDefs } from './commands/getOveHotkeyDefs';
 export { getStructuredBases } from './RowItem/StackedAnnotations/getStructuredBases';
+export { divideBy3 } from './utils/proteinUtils';
 export { default as withEditorProps, connectToEditor } from './withEditorProps';
 export { default as Editor, Editor as EditorUnconnected } from './Editor';
 export { default as CutsiteFilter, CutsiteFilter as CutsiteFilterUnconnected } from './CutsiteFilter';

package/index.es.js

@@ -123033,7 +123033,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.7.23";
+const version = "0.7.24";
 const main = "./src/index.js";
 const type = "module";
 const exports$1 = {
@@ -123947,7 +123947,7 @@ const fileCommandDefs = __spreadValues(__spreadProps(__spreadValues({
     handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile(isProtein(props) ? "genpept" : "genbank"), "handler")
   },
   exportDNASequenceAsFasta: {
-    name: /* @__PURE__ */ __name((props) => `Download ${props.sequenceData.isProtein ? "DNA " : ""}FASTA File`, "name"),
+    name: /* @__PURE__ */ __name((props) => `Download ${isProtein(props) ? "DNA " : ""}FASTA File`, "name"),
     isHidden: /* @__PURE__ */ __name((props) => !props.sequenceData.sequence, "isHidden"),
     handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile("fasta", {
       sequence: props.sequenceData.sequence,
@@ -124078,7 +124078,7 @@ const editCommandDefs = __spreadValues(__spreadProps(__spreadValues({
     hotkey: "mod+x"
   },
   createNewFromSubsequence: {
-    name: "New Sequence From Selected Range",
+    name: /* @__PURE__ */ __name((props) => isProtein(props) ? "Create New AA Sequence From Selection" : isOligo(props) ? "Create New Oligo From Selection" : "Create New DNA Sequence From Selection", "name"),
     isDisabled: /* @__PURE__ */ __name((props) => props.sequenceLength === 0 || props.selectionLayer.start === -1, "isDisabled"),
     isHidden: /* @__PURE__ */ __name((props) => !props.onCreateNewFromSubsequence, "isHidden"),
     handler: /* @__PURE__ */ __name((props) => {
@@ -124714,11 +124714,6 @@ const annotationToggleCommandDefs = {};
       return !props.annotationVisibility.features && "Features must be visible to view their translations" || !props.annotationVisibility.translations && "Translations must be visible to view CDS feature translations";
     }, "isDisabled")
   },
-  // {
-  //   type: "aminoAcidNumbers",
-  //   isHidden: (p, c) =>
-  //     (c.isDnaMenu && p.isProtein) || (!c.isDnaMenu && !p.isProtein)
-  // },
   { type: "aminoAcidNumbers" },
   "axisNumbers",
   {
@@ -124793,7 +124788,7 @@ const additionalAnnotationCommandsDefs = {
   showAll: {
     handler: /* @__PURE__ */ __name((props) => {
       annotationTypes.forEach((type2) => {
-        if (props.isProtein) {
+        if (isProtein(props)) {
           if (type2 === "translations" || type2 === "cutsites")
             return props.annotationVisibilityHide(type2);
         }
@@ -155266,6 +155261,7 @@ export {
   addAlignment,
   connectToEditor,
   createVectorEditor,
+  divideBy3,
   getGaps,
   getOveHotkeyDefs,
   getRangeAnglesSpecial,

package/index.umd.js

@@ -150928,7 +150928,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
   }
   __name(showFileDialog, "showFileDialog");
   const name = "@teselagen/ove";
-  const version = "0.7.23";
+  const version = "0.7.24";
   const main = "./src/index.js";
   const type = "module";
   const exports$1 = {
@@ -151842,7 +151842,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
       handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile(isProtein(props) ? "genpept" : "genbank"), "handler")
     },
     exportDNASequenceAsFasta: {
-      name: /* @__PURE__ */ __name((props) => `Download ${props.sequenceData.isProtein ? "DNA " : ""}FASTA File`, "name"),
+      name: /* @__PURE__ */ __name((props) => `Download ${isProtein(props) ? "DNA " : ""}FASTA File`, "name"),
       isHidden: /* @__PURE__ */ __name((props) => !props.sequenceData.sequence, "isHidden"),
       handler: /* @__PURE__ */ __name((props) => props.exportSequenceToFile("fasta", {
         sequence: props.sequenceData.sequence,
@@ -151973,7 +151973,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
       hotkey: "mod+x"
     },
     createNewFromSubsequence: {
-      name: "New Sequence From Selected Range",
+      name: /* @__PURE__ */ __name((props) => isProtein(props) ? "Create New AA Sequence From Selection" : isOligo(props) ? "Create New Oligo From Selection" : "Create New DNA Sequence From Selection", "name"),
       isDisabled: /* @__PURE__ */ __name((props) => props.sequenceLength === 0 || props.selectionLayer.start === -1, "isDisabled"),
       isHidden: /* @__PURE__ */ __name((props) => !props.onCreateNewFromSubsequence, "isHidden"),
       handler: /* @__PURE__ */ __name((props) => {
@@ -152609,11 +152609,6 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
         return !props.annotationVisibility.features && "Features must be visible to view their translations" || !props.annotationVisibility.translations && "Translations must be visible to view CDS feature translations";
       }, "isDisabled")
     },
-    // {
-    //   type: "aminoAcidNumbers",
-    //   isHidden: (p, c) =>
-    //     (c.isDnaMenu && p.isProtein) || (!c.isDnaMenu && !p.isProtein)
-    // },
     { type: "aminoAcidNumbers" },
     "axisNumbers",
     {
@@ -152688,7 +152683,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
     showAll: {
       handler: /* @__PURE__ */ __name((props) => {
         annotationTypes.forEach((type2) => {
-          if (props.isProtein) {
+          if (isProtein(props)) {
             if (type2 === "translations" || type2 === "cutsites")
               return props.annotationVisibilityHide(type2);
           }
@@ -189405,6 +189400,7 @@ ${seqDataToCopy}\r
   exports2.addAlignment = addAlignment;
   exports2.connectToEditor = connectToEditor;
   exports2.createVectorEditor = createVectorEditor;
+  exports2.divideBy3 = divideBy3;
   exports2.getOveHotkeyDefs = getOveHotkeyDefs;
   exports2.getRangeAnglesSpecial = getRangeAnglesSpecial;
   exports2.getStructuredBases = getStructuredBases;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.7.24",
+  "version": "0.7.25",
   "main": "./src/index.js",
   "type": "module",
   "exports": {

package/src/commands/index.js

@@ -265,8 +265,7 @@ const fileCommandDefs = {
       props.exportSequenceToFile(isProtein(props) ? "genpept" : "genbank")
   },
   exportDNASequenceAsFasta: {
-    name: props =>
-      `Download ${props.sequenceData.isProtein ? "DNA " : ""}FASTA File`,
+    name: props => `Download ${isProtein(props) ? "DNA " : ""}FASTA File`,
     isHidden: props => !props.sequenceData.sequence,
     handler: props =>
       props.exportSequenceToFile("fasta", {
@@ -418,7 +417,12 @@ const editCommandDefs = {
     hotkey: "mod+x"
   },
   createNewFromSubsequence: {
-    name: "New Sequence From Selected Range",
+    name: props =>
+      isProtein(props)
+        ? "Create New AA Sequence From Selection"
+        : isOligo(props)
+          ? "Create New Oligo From Selection"
+          : "Create New DNA Sequence From Selection",
     isDisabled: props =>
       props.sequenceLength === 0 || props.selectionLayer.start === -1,
     isHidden: props => !props.onCreateNewFromSubsequence,
@@ -1190,11 +1194,6 @@ const annotationToggleCommandDefs = {};
       );
     }
   },
-  // {
-  //   type: "aminoAcidNumbers",
-  //   isHidden: (p, c) =>
-  //     (c.isDnaMenu && p.isProtein) || (!c.isDnaMenu && !p.isProtein)
-  // },
   { type: "aminoAcidNumbers" },
   "axisNumbers",
   {
@@ -1288,7 +1287,7 @@ const additionalAnnotationCommandsDefs = {
   showAll: {
     handler: props => {
       annotationTypes.forEach(type => {
-        if (props.isProtein) {
+        if (isProtein(props)) {
           if (type === "translations" || type === "cutsites")
             return props.annotationVisibilityHide(type);
         }
@@ -1306,10 +1305,6 @@ const additionalAnnotationCommandsDefs = {
   showAllLabels: {
     handler: props => {
       annotationTypes.forEach(type => {
-        // if (props.isProtein) {
-        //   if (type === "translations" || type === "cutsites")
-        //     return props.annotationVisibilityHide(type);
-        // }
         props.annotationLabelVisibilityShow(type);
       });
     }

package/src/index.js

@@ -52,3 +52,4 @@ export { default as EnzymeViewer } from "./EnzymeViewer";
 export { default as AlignmentView } from "./AlignmentView";
 export { default as getOveHotkeyDefs } from "./commands/getOveHotkeyDefs";
 export { getStructuredBases } from "./RowItem/StackedAnnotations/getStructuredBases";
+export { divideBy3 } from "./utils/proteinUtils";