@teselagen/ove 0.5.6 → 0.5.8

package/index.umd.js

@@ -9853,16 +9853,25 @@ var __async = (__this, __arguments, generator) => {
     return value;
   }, "GetIntrinsic");
   var callBind$3 = { exports: {} };
-  var GetIntrinsic$4 = getIntrinsic;
-  var $defineProperty$4 = GetIntrinsic$4("%Object.defineProperty%", true) || false;
-  if ($defineProperty$4) {
-    try {
-      $defineProperty$4({}, "a", { value: 1 });
-    } catch (e2) {
-      $defineProperty$4 = false;
+  var esDefineProperty;
+  var hasRequiredEsDefineProperty;
+  function requireEsDefineProperty() {
+    if (hasRequiredEsDefineProperty)
+      return esDefineProperty;
+    hasRequiredEsDefineProperty = 1;
+    var GetIntrinsic2 = getIntrinsic;
+    var $defineProperty2 = GetIntrinsic2("%Object.defineProperty%", true) || false;
+    if ($defineProperty2) {
+      try {
+        $defineProperty2({}, "a", { value: 1 });
+      } catch (e2) {
+        $defineProperty2 = false;
+      }
     }
+    esDefineProperty = $defineProperty2;
+    return esDefineProperty;
   }
-  var esDefineProperty = $defineProperty$4;
+  __name(requireEsDefineProperty, "requireEsDefineProperty");
   var GetIntrinsic$3 = getIntrinsic;
   var $gOPD$1 = GetIntrinsic$3("%Object.getOwnPropertyDescriptor%", true);
   if ($gOPD$1) {
@@ -9873,7 +9882,7 @@ var __async = (__this, __arguments, generator) => {
     }
   }
   var gopd$1 = $gOPD$1;
-  var $defineProperty$3 = esDefineProperty;
+  var $defineProperty$3 = requireEsDefineProperty();
   var $SyntaxError = syntax;
   var $TypeError$4 = type$1;
   var gopd = gopd$1;
@@ -9914,7 +9923,7 @@ var __async = (__this, __arguments, generator) => {
       throw new $SyntaxError("This environment does not support defining a property as non-configurable, non-writable, or non-enumerable.");
     }
   }, "defineDataProperty");
-  var $defineProperty$2 = esDefineProperty;
+  var $defineProperty$2 = requireEsDefineProperty();
   var hasPropertyDescriptors = /* @__PURE__ */ __name(function hasPropertyDescriptors2() {
     return !!$defineProperty$2;
   }, "hasPropertyDescriptors");
@@ -9983,7 +9992,7 @@ var __async = (__this, __arguments, generator) => {
     var $apply = GetIntrinsic2("%Function.prototype.apply%");
     var $call = GetIntrinsic2("%Function.prototype.call%");
     var $reflectApply = GetIntrinsic2("%Reflect.apply%", true) || bind2.call($call, $apply);
-    var $defineProperty2 = esDefineProperty;
+    var $defineProperty2 = requireEsDefineProperty();
     var $max = GetIntrinsic2("%Math.max%");
     module2.exports = /* @__PURE__ */ __name(function callBind2(originalFunction) {
       if (typeof originalFunction !== "function") {
@@ -61394,6 +61403,7 @@ ${latestSubscriptionCallbackError.current.stack}
       };
     }
     render() {
+      var _b2;
       const _a2 = this.props, {
         multi,
         options,
@@ -61404,6 +61414,7 @@ ${latestSubscriptionCallbackError.current.stack}
         tagInputProps: tagInputProps,
         autoFocus,
         autoOpen,
+        mustHaveQueryToOpen,
         noResultsText,
         noResults: _noResults,
         inputProps,
@@ -61427,6 +61438,7 @@ ${latestSubscriptionCallbackError.current.stack}
         "tagInputProps",
         "autoFocus",
         "autoOpen",
+        "mustHaveQueryToOpen",
         "noResultsText",
         "noResults",
         "inputProps",
@@ -61443,6 +61455,7 @@ ${latestSubscriptionCallbackError.current.stack}
       let noResults = _noResults;
       if (noResults === void 0)
         noResults = noResultsDefault;
+      const hasQuery = ((_b2 = this.state.query) == null ? void 0 : _b2.length) > 0;
       const hasValue = Array.isArray(value) ? value.length > 0 : !!value || value === 0;
       const rightElement = isLoading ? /* @__PURE__ */ React$2.createElement(Button, { loading: true, minimal: true }) : /* @__PURE__ */ React$2.createElement("span", null, additionalRightEl, hasValue && !disallowClear && !disabled && /* @__PURE__ */ React$2.createElement(
         Button,
@@ -61495,7 +61508,7 @@ ${latestSubscriptionCallbackError.current.stack}
             wrapperTagName: "div",
             canEscapeKeyClose: true,
             onInteraction: this.onInteraction,
-            isOpen: this.state.isOpen,
+            isOpen: mustHaveQueryToOpen ? hasQuery && this.state.isOpen : this.state.isOpen,
             modifiers: popoverOverflowModifiers
           }, popoverProps),
           onItemSelect: this.handleItemSelect,
@@ -99794,11 +99807,13 @@ ${latestSubscriptionCallbackError.current.stack}
   };
   __name(_ResizableDraggableDialog, "ResizableDraggableDialog");
   let ResizableDraggableDialog = _ResizableDraggableDialog;
-  function MenuItemLink({ text: text2, onClick, icon, navTo }) {
+  function MenuItemLink({ text: text2, onClick, icon, navTo, active: active2 }) {
     const handleLinkClick = /* @__PURE__ */ __name((e2) => {
       e2.target.closest(`.${POPOVER_DISMISS}`).click();
     }, "handleLinkClick");
-    return /* @__PURE__ */ React$2.createElement("li", { className: POPOVER_DISMISS, onClick }, /* @__PURE__ */ React$2.createElement(Link, { onClick: handleLinkClick, to: navTo, className: "bp3-menu-item" }, icon && /* @__PURE__ */ React$2.createElement(Icon, { icon }), /* @__PURE__ */ React$2.createElement("div", { className: "bp3-text-overflow-ellipsis bp3-fill" }, text2)));
+    return /* @__PURE__ */ React$2.createElement("li", { className: POPOVER_DISMISS, onClick }, /* @__PURE__ */ React$2.createElement(Link, { onClick: handleLinkClick, to: navTo, className: classNames$1(MENU_ITEM, {
+      [ACTIVE]: active2
+    }) }, icon && /* @__PURE__ */ React$2.createElement(Icon, { icon }), /* @__PURE__ */ React$2.createElement("div", { className: "bp3-text-overflow-ellipsis bp3-fill" }, text2)));
   }
   __name(MenuItemLink, "MenuItemLink");
   const EnhancedMenuItem = compose(
@@ -118436,6 +118451,7 @@ ${latestSubscriptionCallbackError.current.stack}
           const feat = getCurrentFeature();
           feat.type = key2;
           feat.strand = strand;
+          feat.forward = strand === 1;
           feat.locations = feat.locations.concat(
             parseFeatureLocation(
               val2,
@@ -149269,7 +149285,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
   }
   __name(showFileDialog, "showFileDialog");
   const name = "@teselagen/ove";
-  const version = "0.5.5";
+  const version = "0.5.7";
   const main = "./src/index.js";
   const type = "module";
   const exports$1 = {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.5.6",
+  "version": "0.5.8",
   "main": "./src/index.js",
   "exports": {
     ".": {
@@ -12,10 +12,10 @@
   "dependencies": {
     "@teselagen/sequence-utils": "0.3.24",
     "@teselagen/range-utils": "0.3.7",
-    "@teselagen/ui": "0.4.5",
+    "@teselagen/ui": "0.4.6",
     "@teselagen/file-utils": "0.3.16",
     "@teselagen/bounce-loader": "0.3.11",
-    "@teselagen/bio-parsers": "0.4.16",
+    "@teselagen/bio-parsers": "0.4.17",
     "@blueprintjs/core": "3.52.0",
     "@blueprintjs/datetime": "3.23.19",
     "@blueprintjs/icons": "3.33.0",
@@ -64,9 +64,7 @@
     "popper.js": "^1.16.1",
     "prop-types": "^15.6.2",
     "qs": "^6.9.6",
-    "react": "18.2.0",
     "react-color": "^2.19.3",
-    "react-dom": "18.2.0",
     "react-draggable": "4.4.5",
     "react-dropzone": "^11.4.2",
     "react-markdown": "8.0.7",

package/src/CircularView/index.js

@@ -275,8 +275,8 @@ export function CircularView(props) {
                 rangeToShowLength < 10
                   ? 2
                   : rangeToShowLength < 50
-                  ? Math.ceil(rangeToShowLength / 25) * 5
-                  : Math.ceil(rangeToShowLength / 100) * 10,
+                    ? Math.ceil(rangeToShowLength / 25) * 5
+                    : Math.ceil(rangeToShowLength / 100) * 10,
               sequenceLength,
               isProtein
             }).map(pos => {
@@ -767,8 +767,8 @@ export function CircularView(props) {
               caretPosition > -1
                 ? caretPosition
                 : selectionLayer.start > -1
-                ? getMiddleOfRange(selectionLayer, sequenceLength)
-                : undefined;
+                  ? getMiddleOfRange(selectionLayer, sequenceLength)
+                  : undefined;
             if (caret !== undefined) {
               const radToRotateTo = (caret / sequenceLength) * Math.PI * 2;
               rotateHelper.current.triggerChange &&

package/src/RowItem/StackedAnnotations/primerBases.js

@@ -167,10 +167,10 @@ export function getBasesToShow({
                     b === "&"
                       ? "tg-no-show-seq"
                       : isMatch
-                      ? ""
-                      : isAmbiguousMatch
-                      ? "tg-ambiguous-match-seq"
-                      : "tg-no-match-seq"
+                        ? ""
+                        : isAmbiguousMatch
+                          ? "tg-ambiguous-match-seq"
+                          : "tg-no-match-seq"
                   }
                   textLength={textLength}
                 >

package/src/helperComponents/AddOrEditPrimerDialog/index.js

@@ -84,8 +84,8 @@ const CustomContentEditable = generateField(function CustomContentEditable({
         isMatch
           ? ""
           : isAmbiguousMatch
-          ? "tg-ambiguous-match-seq"
-          : "tg-no-match-seq"
+            ? "tg-ambiguous-match-seq"
+            : "tg-no-match-seq"
       }">${b}</span>`;
     }
   );

package/src/utils/getAnnotationNameAndStartStopString.js

@@ -48,12 +48,12 @@ export default function getAnnotationNameAndStartStopString(
     readOnly
       ? ""
       : annotationTypePlural === "cutsites"
-      ? `
+        ? `
 
  click --> top cut position
  alt/option+click --> bottom cut position
  cmd/ctrl+click --> recognition range`
-      : `
+        : `
 
 alt/option+click --> jump row view to start/end
 double click --> edit`

package/src/withEditorInteractions/clickAndDragUtils.js

@@ -89,8 +89,8 @@ export const editorDragStarted = function (opts) {
   selectionStartOrEndGrabbed = opts.selectionStartGrabbed
     ? "start"
     : opts.selectionEndGrabbed
-    ? "end"
-    : null;
+      ? "end"
+      : null;
 };
 export const editorDragStopped = function () {
   document.body.classList.remove("sequenceDragging"); //needed to prevent the input bubble from losing focus post user drag