@teselagen/ove 0.5.28 → 0.5.30

package/index.cjs.js

@@ -35860,7 +35860,7 @@ function getTagProps(vals) {
 }
 __name(getTagProps, "getTagProps");
 const popoverOverflowModifiers = {
-  preventOverflow: { enabled: false },
+  preventOverflow: { boundariesElement: "viewport" },
   hide: {
     enabled: false
   },
@@ -37154,16 +37154,25 @@ var getIntrinsic = /* @__PURE__ */ __name(function GetIntrinsic(name2, allowMiss
   return value;
 }, "GetIntrinsic");
 var callBind$3 = { exports: {} };
-var GetIntrinsic$4 = getIntrinsic;
-var $defineProperty$2 = GetIntrinsic$4("%Object.defineProperty%", true) || false;
-if ($defineProperty$2) {
-  try {
-    $defineProperty$2({}, "a", { value: 1 });
-  } catch (e2) {
-    $defineProperty$2 = false;
+var esDefineProperty;
+var hasRequiredEsDefineProperty;
+function requireEsDefineProperty() {
+  if (hasRequiredEsDefineProperty)
+    return esDefineProperty;
+  hasRequiredEsDefineProperty = 1;
+  var GetIntrinsic3 = getIntrinsic;
+  var $defineProperty2 = GetIntrinsic3("%Object.defineProperty%", true) || false;
+  if ($defineProperty2) {
+    try {
+      $defineProperty2({}, "a", { value: 1 });
+    } catch (e2) {
+      $defineProperty2 = false;
+    }
   }
+  esDefineProperty = $defineProperty2;
+  return esDefineProperty;
 }
-var esDefineProperty = $defineProperty$2;
+__name(requireEsDefineProperty, "requireEsDefineProperty");
 var GetIntrinsic$3 = getIntrinsic;
 var $gOPD$1 = GetIntrinsic$3("%Object.getOwnPropertyDescriptor%", true);
 if ($gOPD$1) {
@@ -37174,7 +37183,7 @@ if ($gOPD$1) {
   }
 }
 var gopd$1 = $gOPD$1;
-var $defineProperty$1 = esDefineProperty;
+var $defineProperty$1 = requireEsDefineProperty();
 var $SyntaxError = syntax;
 var $TypeError$4 = type$1;
 var gopd = gopd$1;
@@ -37215,7 +37224,7 @@ var defineDataProperty$1 = /* @__PURE__ */ __name(function defineDataProperty(ob
     throw new $SyntaxError("This environment does not support defining a property as non-configurable, non-writable, or non-enumerable.");
   }
 }, "defineDataProperty");
-var $defineProperty = esDefineProperty;
+var $defineProperty = requireEsDefineProperty();
 var hasPropertyDescriptors = /* @__PURE__ */ __name(function hasPropertyDescriptors2() {
   return !!$defineProperty;
 }, "hasPropertyDescriptors");
@@ -37284,7 +37293,7 @@ var setFunctionLength = /* @__PURE__ */ __name(function setFunctionLength2(fn4,
   var $apply = GetIntrinsic3("%Function.prototype.apply%");
   var $call = GetIntrinsic3("%Function.prototype.call%");
   var $reflectApply = GetIntrinsic3("%Reflect.apply%", true) || bind3.call($call, $apply);
-  var $defineProperty2 = esDefineProperty;
+  var $defineProperty2 = requireEsDefineProperty();
   var $max = GetIntrinsic3("%Math.max%");
   module2.exports = /* @__PURE__ */ __name(function callBind2(originalFunction) {
     if (typeof originalFunction !== "function") {
@@ -69607,8 +69616,6 @@ var DraggableCore$1 = /* @__PURE__ */ function(_React$Component) {
       if (_this.props.disabled || !(e2.target instanceof ownerDocument.defaultView.Node) || _this.props.handle && !(0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.handle, thisNode) || _this.props.cancel && (0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.cancel, thisNode)) {
         return;
       }
-      if (e2.type === "touchstart")
-        e2.preventDefault();
       var touchIdentifier = (0, _domFns.getTouchIdentifier)(e2);
       _this.setState({
         touchIdentifier
@@ -119371,13 +119378,14 @@ function getStructuredBases({
     forward ? r2.basesNoInserts : r2.basesNoInserts.split("").reverse().join("")
   );
   r2.basesNoInsertsWithMetaData = basesForRange.split("").map((b3, i) => {
+    var _a2, _b2;
     const indexOfBase = i + annotationRange.start;
     let seqForBase = fullSequence && fullSequence[indexOfBase] || "";
     if (!forward) {
       seqForBase = getComplementSequenceString(seqForBase);
     }
     const isMatch = seqForBase.toLowerCase() === b3.toLowerCase();
-    const isAmbiguousMatch = !isMatch && ambiguous_dna_values[b3.toUpperCase()].length > 1 && ambiguous_dna_values[b3.toUpperCase()].includes(seqForBase.toUpperCase());
+    const isAmbiguousMatch = !isMatch && ((_a2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _a2.length) > 1 && ((_b2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _b2.includes(seqForBase.toUpperCase()));
     return {
       b: b3,
       isMatch,
@@ -122411,7 +122419,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.5.27";
+const version = "0.5.29";
 const main = "./src/index.js";
 const type = "module";
 const exports$1 = {

package/index.es.js

@@ -35842,7 +35842,7 @@ function getTagProps(vals) {
 }
 __name(getTagProps, "getTagProps");
 const popoverOverflowModifiers = {
-  preventOverflow: { enabled: false },
+  preventOverflow: { boundariesElement: "viewport" },
   hide: {
     enabled: false
   },
@@ -37136,16 +37136,25 @@ var getIntrinsic = /* @__PURE__ */ __name(function GetIntrinsic(name2, allowMiss
   return value;
 }, "GetIntrinsic");
 var callBind$3 = { exports: {} };
-var GetIntrinsic$4 = getIntrinsic;
-var $defineProperty$2 = GetIntrinsic$4("%Object.defineProperty%", true) || false;
-if ($defineProperty$2) {
-  try {
-    $defineProperty$2({}, "a", { value: 1 });
-  } catch (e2) {
-    $defineProperty$2 = false;
+var esDefineProperty;
+var hasRequiredEsDefineProperty;
+function requireEsDefineProperty() {
+  if (hasRequiredEsDefineProperty)
+    return esDefineProperty;
+  hasRequiredEsDefineProperty = 1;
+  var GetIntrinsic3 = getIntrinsic;
+  var $defineProperty2 = GetIntrinsic3("%Object.defineProperty%", true) || false;
+  if ($defineProperty2) {
+    try {
+      $defineProperty2({}, "a", { value: 1 });
+    } catch (e2) {
+      $defineProperty2 = false;
+    }
   }
+  esDefineProperty = $defineProperty2;
+  return esDefineProperty;
 }
-var esDefineProperty = $defineProperty$2;
+__name(requireEsDefineProperty, "requireEsDefineProperty");
 var GetIntrinsic$3 = getIntrinsic;
 var $gOPD$1 = GetIntrinsic$3("%Object.getOwnPropertyDescriptor%", true);
 if ($gOPD$1) {
@@ -37156,7 +37165,7 @@ if ($gOPD$1) {
   }
 }
 var gopd$1 = $gOPD$1;
-var $defineProperty$1 = esDefineProperty;
+var $defineProperty$1 = requireEsDefineProperty();
 var $SyntaxError = syntax;
 var $TypeError$4 = type$1;
 var gopd = gopd$1;
@@ -37197,7 +37206,7 @@ var defineDataProperty$1 = /* @__PURE__ */ __name(function defineDataProperty(ob
     throw new $SyntaxError("This environment does not support defining a property as non-configurable, non-writable, or non-enumerable.");
   }
 }, "defineDataProperty");
-var $defineProperty = esDefineProperty;
+var $defineProperty = requireEsDefineProperty();
 var hasPropertyDescriptors = /* @__PURE__ */ __name(function hasPropertyDescriptors2() {
   return !!$defineProperty;
 }, "hasPropertyDescriptors");
@@ -37266,7 +37275,7 @@ var setFunctionLength = /* @__PURE__ */ __name(function setFunctionLength2(fn4,
   var $apply = GetIntrinsic3("%Function.prototype.apply%");
   var $call = GetIntrinsic3("%Function.prototype.call%");
   var $reflectApply = GetIntrinsic3("%Reflect.apply%", true) || bind3.call($call, $apply);
-  var $defineProperty2 = esDefineProperty;
+  var $defineProperty2 = requireEsDefineProperty();
   var $max = GetIntrinsic3("%Math.max%");
   module2.exports = /* @__PURE__ */ __name(function callBind2(originalFunction) {
     if (typeof originalFunction !== "function") {
@@ -69589,8 +69598,6 @@ var DraggableCore$1 = /* @__PURE__ */ function(_React$Component) {
       if (_this.props.disabled || !(e2.target instanceof ownerDocument.defaultView.Node) || _this.props.handle && !(0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.handle, thisNode) || _this.props.cancel && (0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.cancel, thisNode)) {
         return;
       }
-      if (e2.type === "touchstart")
-        e2.preventDefault();
       var touchIdentifier = (0, _domFns.getTouchIdentifier)(e2);
       _this.setState({
         touchIdentifier
@@ -119353,13 +119360,14 @@ function getStructuredBases({
     forward ? r2.basesNoInserts : r2.basesNoInserts.split("").reverse().join("")
   );
   r2.basesNoInsertsWithMetaData = basesForRange.split("").map((b3, i) => {
+    var _a2, _b2;
     const indexOfBase = i + annotationRange.start;
     let seqForBase = fullSequence && fullSequence[indexOfBase] || "";
     if (!forward) {
       seqForBase = getComplementSequenceString(seqForBase);
     }
     const isMatch = seqForBase.toLowerCase() === b3.toLowerCase();
-    const isAmbiguousMatch = !isMatch && ambiguous_dna_values[b3.toUpperCase()].length > 1 && ambiguous_dna_values[b3.toUpperCase()].includes(seqForBase.toUpperCase());
+    const isAmbiguousMatch = !isMatch && ((_a2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _a2.length) > 1 && ((_b2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _b2.includes(seqForBase.toUpperCase()));
     return {
       b: b3,
       isMatch,
@@ -122393,7 +122401,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.5.27";
+const version = "0.5.29";
 const main = "./src/index.js";
 const type = "module";
 const exports$1 = {

package/index.umd.js

@@ -62525,7 +62525,7 @@ ${latestSubscriptionCallbackError.current.stack}
   }
   __name(getTagProps, "getTagProps");
   const popoverOverflowModifiers = {
-    preventOverflow: { enabled: false },
+    preventOverflow: { boundariesElement: "viewport" },
     hide: {
       enabled: false
     },
@@ -98732,8 +98732,6 @@ ${latestSubscriptionCallbackError.current.stack}
         if (_this.props.disabled || !(e2.target instanceof ownerDocument.defaultView.Node) || _this.props.handle && !(0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.handle, thisNode) || _this.props.cancel && (0, _domFns.matchesSelectorAndParentsTo)(e2.target, _this.props.cancel, thisNode)) {
           return;
         }
-        if (e2.type === "touchstart")
-          e2.preventDefault();
         var touchIdentifier = (0, _domFns.getTouchIdentifier)(e2);
         _this.setState({
           touchIdentifier
@@ -147827,13 +147825,14 @@ double click --> edit`}`;
       forward ? r2.basesNoInserts : r2.basesNoInserts.split("").reverse().join("")
     );
     r2.basesNoInsertsWithMetaData = basesForRange.split("").map((b3, i2) => {
+      var _a2, _b2;
       const indexOfBase = i2 + annotationRange.start;
       let seqForBase = fullSequence && fullSequence[indexOfBase] || "";
       if (!forward) {
         seqForBase = getComplementSequenceString(seqForBase);
       }
       const isMatch = seqForBase.toLowerCase() === b3.toLowerCase();
-      const isAmbiguousMatch = !isMatch && ambiguous_dna_values[b3.toUpperCase()].length > 1 && ambiguous_dna_values[b3.toUpperCase()].includes(seqForBase.toUpperCase());
+      const isAmbiguousMatch = !isMatch && ((_a2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _a2.length) > 1 && ((_b2 = ambiguous_dna_values[b3.toUpperCase()]) == null ? void 0 : _b2.includes(seqForBase.toUpperCase()));
       return {
         b: b3,
         isMatch,
@@ -150833,7 +150832,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
   }
   __name(showFileDialog, "showFileDialog");
   const name = "@teselagen/ove";
-  const version = "0.5.27";
+  const version = "0.5.29";
   const main = "./src/index.js";
   const type = "module";
   const exports$1 = {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.5.28",
+  "version": "0.5.30",
   "main": "./src/index.js",
   "exports": {
     ".": {
@@ -12,7 +12,7 @@
   "dependencies": {
     "@teselagen/sequence-utils": "0.3.27",
     "@teselagen/range-utils": "0.3.7",
-    "@teselagen/ui": "0.5.20",
+    "@teselagen/ui": "0.5.22",
     "@teselagen/file-utils": "0.3.16",
     "@teselagen/bounce-loader": "0.3.11",
     "@teselagen/bio-parsers": "0.4.22",

package/src/RowItem/Sequence.js

@@ -265,7 +265,7 @@ class ColoredSequence extends React.Component {
 function getBoldRegion({ sequence, overlapToBold, rowStart, sequenceLength }) {
   if (isSafari) {
     // safari doesn't support text length with tspans so we can't bold the sequence - https://github.com/TeselaGen/tg-oss/issues/80
-    return sequence
+    return sequence;
   }
   const toRet = [];
   const [a, b] = overlapToBold || [];

package/src/RowItem/StackedAnnotations/getStructuredBases.js

@@ -71,8 +71,8 @@ export function getStructuredBases({
     const isMatch = seqForBase.toLowerCase() === b.toLowerCase();
     const isAmbiguousMatch =
       !isMatch &&
-      ambiguous_dna_values[b.toUpperCase()].length > 1 &&
-      ambiguous_dna_values[b.toUpperCase()].includes(seqForBase.toUpperCase());
+      ambiguous_dna_values[b.toUpperCase()]?.length > 1 &&
+      ambiguous_dna_values[b.toUpperCase()]?.includes(seqForBase.toUpperCase());
     return {
       b,
       isMatch,