@teselagen/ove 0.5.16 → 0.5.18

package/selectors/cdsFeaturesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any[]) & import("reselect").OutputSelectorFields<(args_0: any) => any[], {
+declare const _default: ((state: any) => any[]) & import('reselect').OutputSelectorFields<(args_0: any) => any[], {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/cutsiteLabelColorSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any) => any, {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/cutsitesSelector.d.ts

@@ -2,7 +2,7 @@ declare const _default: ((state: any) => {
     cutsitesByName: {};
     cutsitesById: {};
     cutsitesArray: never[];
-}) & import("reselect").OutputSelectorFields<(...args: any) => {
+}) & import('reselect').OutputSelectorFields<(...args: any) => {
     cutsitesByName: {};
     cutsitesById: {};
     cutsitesArray: never[];

package/selectors/featuresSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any) => any, {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/filteredCutsitesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any, ...params: any[]) => any) & import("reselect").OutputSelectorFields<(...args: readonly unknown[]) => any, {
+declare const _default: ((state: any, ...params: any[]) => any) & import('reselect').OutputSelectorFields<(...args: readonly unknown[]) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/filteredFeaturesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => Partial<any>) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => Partial<any>, {
+declare const _default: ((state: any) => Partial<any>) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => Partial<any>, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/filteredPartsSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any[]) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => any[], {
+declare const _default: ((state: any) => any[]) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any) => any[], {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/filteredPrimersSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => Partial<any>) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => Partial<any>, {
+declare const _default: ((state: any) => Partial<any>) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => Partial<any>, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/getAdditionalEnzymesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any, ...params: any[]) => {}) & import("reselect").OutputSelectorFields<(...args: readonly unknown[]) => {}, {
+declare const _default: ((state: any, ...params: any[]) => {}) & import('reselect').OutputSelectorFields<(...args: readonly unknown[]) => {}, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/index.d.ts

@@ -1,3 +1,22 @@
+import { default as translationsSelector } from './translationsSelector';
+import { default as getAdditionalEnzymesSelector } from './getAdditionalEnzymesSelector';
+import { default as cutsitesSelector } from './cutsitesSelector';
+import { default as sequenceDataSelector } from './sequenceDataSelector';
+import { default as sequenceLengthSelector } from './sequenceLengthSelector';
+import { default as selectedCutsitesSelector } from './selectedCutsitesSelector';
+import { default as orfsSelector } from './orfsSelector';
+import { default as circularSelector } from './circularSelector';
+import { default as annotationSearchSelector } from './annotationSearchSelector';
+import { default as searchLayersSelector } from './searchLayersSelector';
+import { default as filteredCutsitesSelector } from './filteredCutsitesSelector';
+import { default as filteredRestrictionEnzymesSelector } from './filteredRestrictionEnzymesSelector';
+import { default as filteredPrimersSelector } from './filteredPrimersSelector';
+import { default as filteredFeaturesSelector } from './filteredFeaturesSelector';
+import { default as filteredPartsSelector } from './filteredPartsSelector';
+import { default as isEnzymeFilterAndSelector } from './isEnzymeFilterAndSelector';
+import { default as restrictionEnzymesSelector } from './restrictionEnzymesSelector';
+import { default as sequenceSelector } from './sequenceSelector';
+import { default as cutsiteLabelColorSelector } from './cutsiteLabelColorSelector';
 declare namespace _default {
     export { translationsSelector };
     export { getAdditionalEnzymesSelector };
@@ -20,22 +39,3 @@ declare namespace _default {
     export { cutsiteLabelColorSelector };
 }
 export default _default;
-import translationsSelector from "./translationsSelector";
-import getAdditionalEnzymesSelector from "./getAdditionalEnzymesSelector";
-import cutsitesSelector from "./cutsitesSelector";
-import sequenceDataSelector from "./sequenceDataSelector";
-import sequenceLengthSelector from "./sequenceLengthSelector";
-import selectedCutsitesSelector from "./selectedCutsitesSelector";
-import orfsSelector from "./orfsSelector";
-import circularSelector from "./circularSelector";
-import annotationSearchSelector from "./annotationSearchSelector";
-import searchLayersSelector from "./searchLayersSelector";
-import filteredCutsitesSelector from "./filteredCutsitesSelector";
-import filteredRestrictionEnzymesSelector from "./filteredRestrictionEnzymesSelector";
-import filteredPrimersSelector from "./filteredPrimersSelector";
-import filteredFeaturesSelector from "./filteredFeaturesSelector";
-import filteredPartsSelector from "./filteredPartsSelector";
-import isEnzymeFilterAndSelector from "./isEnzymeFilterAndSelector";
-import restrictionEnzymesSelector from "./restrictionEnzymesSelector";
-import sequenceSelector from "./sequenceSelector";
-import cutsiteLabelColorSelector from "./cutsiteLabelColorSelector";

package/selectors/orfsSelector.d.ts

@@ -8,7 +8,7 @@ declare const _default: ((state: any) => {
     annotationTypePlural: string;
     isOrf: boolean;
     id: any;
-}[]) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => {
+}[]) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => {
     start: number;
     end: number;
     length: number;

package/selectors/partsSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any) => any, {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/primersSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any) => any, {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/restrictionEnzymesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any, ...params: any[]) => any) & import("reselect").OutputSelectorFields<(...args: readonly unknown[]) => any, {
+declare const _default: ((state: any, ...params: any[]) => any) & import('reselect').OutputSelectorFields<(...args: readonly unknown[]) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/searchLayersSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any[]) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any, args_5: any, args_6: any, args_7: any) => any[], {
+declare const _default: ((state: any) => any[]) & import('reselect').OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any, args_5: any, args_6: any, args_7: any) => any[], {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/selectedCutsitesSelector.d.ts

@@ -1,7 +1,7 @@
 declare const _default: ((state: any) => {
     idStack: any;
     idMap: {};
-}) & import("reselect").OutputSelectorFields<(args_0: any) => {
+}) & import('reselect').OutputSelectorFields<(args_0: any) => {
     idStack: any;
     idMap: {};
 }, {

package/selectors/translationSearchMatchesSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any, ...params: any[]) => unknown) & import("reselect").OutputSelectorFields<(...args: readonly unknown[]) => unknown, {
+declare const _default: ((state: any, ...params: any[]) => unknown) & import('reselect').OutputSelectorFields<(...args: readonly unknown[]) => unknown, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/translationsRawSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any) => any, {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any) => any, {
     clearCache: () => void;
 }> & {
     clearCache: () => void;

package/selectors/translationsSelector.d.ts

@@ -1,4 +1,4 @@
-declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any, args_1: unknown, args_2: any, args_3: {
+declare const _default: ((state: any) => any) & import('reselect').OutputSelectorFields<(args_0: any, args_1: unknown, args_2: any, args_3: {
     start: number;
     end: number;
     length: number;

package/src/StatusBar/index.js

@@ -19,14 +19,29 @@ import { handleReadOnlyChange } from "../ToolBar/editTool";
 const EditReadOnlyItem = connectToEditor(({ readOnly }) => ({
   readOnly
 }))(props => {
-  const { onSave, readOnly, showReadOnly, disableSetReadOnly } = props;
+  const {
+    onSave,
+    readOnly,
+    showReadOnly,
+    disableSetReadOnly,
+    disableBpEditing
+  } = props;
   return showReadOnly ? (
     <StatusBarItem dataTest="veStatusBar-readOnly">
       {onSave ? (
         <HTMLSelect
+          data-tip={
+            !readOnly && disableBpEditing ? disableBpEditing : undefined
+          }
           options={[
-            { label: "Read Only", value: "readOnly" },
-            { label: "Editable", value: "editable" }
+            {
+              label: "Read Only",
+              value: "readOnly"
+            },
+            {
+              label: "Editable" + (disableBpEditing ? "*" : ""),
+              value: "editable"
+            }
           ]}
           disabled={disableSetReadOnly || !onSave} //the !onSave here is redundant
           className={Classes.MINIMAL}
@@ -209,6 +224,7 @@ const EditAvailabilityItem = connectToEditor(
 
 export function StatusBar({
   disableSetReadOnly,
+  disableBpEditing,
   onSave,
   editorName,
   showCircularity = true,
@@ -230,6 +246,7 @@ export function StatusBar({
         beforeReadOnlyChange={beforeReadOnlyChange}
         editorName={editorName}
         onSave={onSave}
+        disableBpEditing={disableBpEditing}
         disableSetReadOnly={disableSetReadOnly}
         showReadOnly={showReadOnly}
       />

package/src/helperComponents/AddOrEditAnnotationDialog/index.js

@@ -254,6 +254,7 @@ class AddOrEditAnnotationDialog extends React.Component {
               updatedData = data;
             }
           }
+          const _bases = updatedData.bases || bases;
           if (!data.useLinkedOligo) {
             delete updatedData.bases;
           }
@@ -291,6 +292,7 @@ class AddOrEditAnnotationDialog extends React.Component {
 
           if (beforeAnnotationCreate) {
             const shouldContinue = await beforeAnnotationCreate({
+              bases: _bases,
               annotationTypePlural,
               annotation: newAnnotation,
               props: this.props,

package/src/withEditorInteractions/index.js

@@ -213,10 +213,10 @@ function VectorInteractionHOC(Component /* options */) {
       } = this.props;
 
       if (disableBpEditing) {
-        return window.toastr.warning("Sorry the underlying sequence is locked");
+        return this.createDisableBpEditingMsg();
       }
       if (readOnly) {
-        return window.toastr.warning("Sorry the sequence is Read-Only");
+        return this.createReadOnlyMsg();
       }
       if (!(caretPosition > -1 || selectionLayer.start > -1)) {
         return window.toastr.warning("Please place the cursor before pasting");
@@ -344,6 +344,33 @@ function VectorInteractionHOC(Component /* options */) {
 
     handleCopy = this.handleCutOrCopy();
 
+    getDuplicateAction = () => {
+      if (!this.props.onDuplicate) {
+        return undefined;
+      }
+      return {
+        action: {
+          text: "Create a Duplicate?",
+          onClick: () => {
+            window.__tgClearAllToasts();
+            this.props.onDuplicate(this.props.sequenceData, this.props);
+          }
+        }
+      };
+    };
+    createDisableBpEditingMsg = () => {
+      window.toastr.warning(
+        this.props.disableBpEditing,
+        this.getDuplicateAction()
+      );
+    };
+    createReadOnlyMsg = () => {
+      window.toastr.warning(
+        "Sorry the sequence is Read-Only",
+        this.getDuplicateAction()
+      );
+    };
+
     handleDnaInsert = async ({ useEventPositioning }) => {
       const {
         caretPosition = -1,
@@ -358,10 +385,10 @@ function VectorInteractionHOC(Component /* options */) {
       const sequenceLength = sequenceData.sequence.length;
       const isReplace = selectionLayer.start > -1;
       if (disableBpEditing) {
-        return window.toastr.warning("Sorry the underlying sequence is locked");
+        return this.createDisableBpEditingMsg();
       }
-      if (readOnly || disableBpEditing) {
-        window.toastr.warning("Sorry the sequence is Read-Only");
+      if (readOnly) {
+        return this.createReadOnlyMsg();
       } else {
         createSequenceInputPopup({
           useEventPositioning,
@@ -397,10 +424,10 @@ function VectorInteractionHOC(Component /* options */) {
       } = this.props;
       const sequenceLength = sequenceData.sequence.length;
       if (disableBpEditing) {
-        return window.toastr.warning("Sorry the underlying sequence is locked");
+        return this.createDisableBpEditingMsg();
       }
-      if (readOnly || disableBpEditing) {
-        return window.toastr.warning("Sorry the sequence is Read-Only");
+      if (readOnly) {
+        return this.createReadOnlyMsg();
       }
       if (sequenceLength > 0) {
         let rangeToDelete = selectionLayer;

package/utils/editorUtils.d.ts

@@ -16,7 +16,7 @@ export function getNodeToRefocus(caretEl: any): any;
 export function getEmptyText({ sequenceData, caretPosition }: {
     sequenceData: any;
     caretPosition: any;
-}): import('../../../../node_modules/react/jsx-runtime').JSX.Element | null;
+}): import("react/jsx-runtime").JSX.Element | null;
 export function tryToRefocusEditor(): void;
 export function getCustomEnzymes(): any;
 export function addCustomEnzyme(newEnz: any): void;
@@ -25,12 +25,12 @@ export function getParedDownWarning({ nameUpper, maxToShow, isAdjustable }: {
     nameUpper: any;
     maxToShow: any;
     isAdjustable: any;
-}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
+}): import("react/jsx-runtime").JSX.Element;
 export function getClientX(event: any): any;
 export function getClientY(event: any): any;
 export function hideAnnByLengthFilter(hideOpts: any, ann: any, seqLen: any): any;
 export function getSelFromWrappedAddon(selectionLayer: any, sequenceLength: any): any;
 export function getStripedPattern({ color }: {
     color: any;
-}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
+}): import("react/jsx-runtime").JSX.Element;
 export function getEnzymeAliases(enzyme: any): any[];

package/utils/useAAColorType.d.ts

@@ -1,2 +1,2 @@
 export default useAAColorType;
-declare function useAAColorType(): import("tg-use-local-storage-state").LocalStorageState<string>;
+declare function useAAColorType(): import('tg-use-local-storage-state').LocalStorageState<string>;

package/utils/useAnnotationLimits.d.ts

@@ -1,9 +1,9 @@
 export function LimitAnnotations({ type, ...rest }: {
     [x: string]: any;
     type: any;
-}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
+}): import("react/jsx-runtime").JSX.Element;
 export default useAnnotationLimits;
-declare function useAnnotationLimits(): import("tg-use-local-storage-state").LocalStorageState<{
+declare function useAnnotationLimits(): import('tg-use-local-storage-state').LocalStorageState<{
     features: number;
     parts: number;
     primers: number;

package/utils/useChromatogramPrefs.d.ts

@@ -1,7 +1,7 @@
 export namespace chromatogramMenu {
     let text: string;
     let cmd: string;
-    function component(props: any): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
+    function component(props: any): import("react/jsx-runtime").JSX.Element;
     let shouldDismissPopover: boolean;
 }
-export function useShowChromQualScores(): import("tg-use-local-storage-state").LocalStorageState<boolean>;
+export function useShowChromQualScores(): import('tg-use-local-storage-state').LocalStorageState<boolean>;

package/utils/useLadders.d.ts

@@ -1,2 +1,2 @@
 export default useLadders;
-declare function useLadders(): import("tg-use-local-storage-state").LocalStorageState<never[]>;
+declare function useLadders(): import('tg-use-local-storage-state').LocalStorageState<never[]>;

package/utils/useMeltingTemp.d.ts

@@ -1,2 +1,2 @@
 export default useMeltingTemp;
-declare function useMeltingTemp(): import("tg-use-local-storage-state").LocalStorageState<unknown>;
+declare function useMeltingTemp(): import('tg-use-local-storage-state').LocalStorageState<unknown>;

package/utils/useTmType.d.ts

@@ -1,2 +1,2 @@
 export default useTmType;
-declare function useTmType(): import("tg-use-local-storage-state").LocalStorageState<string>;
+declare function useTmType(): import('tg-use-local-storage-state').LocalStorageState<string>;

package/withEditorInteractions/Keyboard.d.ts

@@ -1,3 +1,4 @@
+import { default as React } from '../../../../node_modules/react';
 export default Clipboard;
 declare class Clipboard extends React.Component<any, any, any> {
     static defaultProps: {
@@ -10,7 +11,6 @@ declare class Clipboard extends React.Component<any, any, any> {
     handleKeyDown: (e: any) => void;
     origFocusedElement: Element | null | undefined;
     handleKeyUp: () => void;
-    render(): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
+    render(): import("react/jsx-runtime").JSX.Element;
     node: HTMLInputElement | undefined;
 }
-import React from '../../../../node_modules/react';

package/withEditorInteractions/index.d.ts

@@ -1,2 +1,2 @@
 export default withEditorInteractions;
-declare const withEditorInteractions: import('../../../../node_modules/redux').Func0<(props: any) => import('../../../../node_modules/react/jsx-runtime').JSX.Element>;
+declare const withEditorInteractions: import('../../../../node_modules/redux').Func0<(props: any) => import("react/jsx-runtime").JSX.Element>;