@teselagen/ove 0.5.11 → 0.5.12

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (317) hide show
  1. package/AlignmentTool/index.d.ts +6 -0
  2. package/AlignmentView/AlignmentVisibilityTool.d.ts +2 -0
  3. package/AlignmentView/EditTrackNameDialog.d.ts +1 -0
  4. package/AlignmentView/HorizontalPanelDragHandle.d.ts +3 -0
  5. package/AlignmentView/Minimap.d.ts +63 -0
  6. package/AlignmentView/Mismatches.d.ts +20 -0
  7. package/AlignmentView/PairwiseAlignmentView.d.ts +9 -0
  8. package/AlignmentView/PerformantSelectionLayer.d.ts +1 -0
  9. package/AlignmentView/coerceInitialValue.d.ts +4 -0
  10. package/AlignmentView/getGapMap.d.ts +1 -0
  11. package/AlignmentView/getGaps.d.ts +4 -0
  12. package/AlignmentView/getPairwiseOverviewLinearViewOptions.d.ts +22 -0
  13. package/AlignmentView/getTrackFromEvent.d.ts +1 -0
  14. package/AlignmentView/index.d.ts +107 -0
  15. package/AlignmentView/isTargetWithinEl.d.ts +1 -0
  16. package/AlignmentView/updateTrackHelper.d.ts +10 -0
  17. package/AutoAnnotate.d.ts +4 -0
  18. package/AutoAnnotateBpMatchingDialog.d.ts +1 -0
  19. package/CircularView/Axis.d.ts +12 -0
  20. package/CircularView/AxisNumbers.d.ts +7 -0
  21. package/CircularView/Caret.d.ts +2 -0
  22. package/CircularView/CircularDnaSequence.d.ts +10 -0
  23. package/CircularView/CircularZoomMinimap.d.ts +4 -0
  24. package/CircularView/Cutsite.d.ts +4 -0
  25. package/CircularView/Cutsites.d.ts +18 -0
  26. package/CircularView/DeletionLayer.d.ts +8 -0
  27. package/CircularView/Feature.d.ts +1 -0
  28. package/CircularView/Labels/index.d.ts +22 -0
  29. package/CircularView/Labels/relaxLabelAngles.d.ts +2 -0
  30. package/CircularView/Labels/relaxLabels_DEPRECATED.d.ts +1 -0
  31. package/CircularView/Orf.d.ts +6 -0
  32. package/CircularView/Part.d.ts +9 -0
  33. package/CircularView/PositionAnnotationOnCircle.d.ts +12 -0
  34. package/CircularView/Primer.d.ts +1 -0
  35. package/CircularView/RotateCircularViewSlider.d.ts +7 -0
  36. package/CircularView/SelectionLayer.d.ts +2 -0
  37. package/CircularView/VeTopRightContainer.d.ts +4 -0
  38. package/CircularView/ZoomCircularViewSlider.d.ts +8 -0
  39. package/CircularView/drawAnnotations.d.ts +10 -0
  40. package/CircularView/drawDirectedPiePiece.d.ts +11 -0
  41. package/CircularView/getAngleForPositionMidpoint.d.ts +1 -0
  42. package/CircularView/getInternalLabel.d.ts +11 -0
  43. package/CircularView/getRangeAnglesSpecial.d.ts +7 -0
  44. package/CircularView/getYOffset.d.ts +1 -0
  45. package/CircularView/index.d.ts +20 -0
  46. package/CircularView/normalizeAngle.d.ts +1 -0
  47. package/CircularView/normalizeAngleRange.d.ts +1 -0
  48. package/CircularView/positionCutsites.d.ts +4 -0
  49. package/CircularView/shouldFlipText.d.ts +1 -0
  50. package/CircularView/utils/polarToSpecialCartesian.d.ts +4 -0
  51. package/CreateAnnotationsPage.d.ts +10 -0
  52. package/CreateCustomEnzyme/index.d.ts +2 -0
  53. package/CutsiteFilter/AdditionalCutsiteInfoDialog.d.ts +29 -0
  54. package/CutsiteFilter/index.d.ts +3 -0
  55. package/CutsiteFilter/withRestrictionEnzymes.d.ts +1 -0
  56. package/DigestTool/AddLaddersDialog.d.ts +1 -0
  57. package/DigestTool/DigestTool.d.ts +11 -0
  58. package/DigestTool/Ladder.d.ts +11 -0
  59. package/DigestTool/createFragmentLines.d.ts +0 -0
  60. package/DigestTool/ladderDefaults.d.ts +5 -0
  61. package/Editor/CommandHotkeyHandler.d.ts +2 -0
  62. package/Editor/DropHandler.d.ts +7 -0
  63. package/Editor/FillWindow.d.ts +9 -0
  64. package/Editor/index.d.ts +41 -0
  65. package/Editor/userDefinedHandlersAndOpts.d.ts +1 -0
  66. package/EnzymeViewer/index.d.ts +11 -0
  67. package/FindBar/index.d.ts +12 -0
  68. package/GlobalDialog.d.ts +1 -0
  69. package/GlobalDialogUtils.d.ts +12 -0
  70. package/LinearView/SequenceName.d.ts +5 -0
  71. package/LinearView/ZoomLinearView.d.ts +7 -0
  72. package/LinearView/index.d.ts +5 -0
  73. package/ManageEnzymes/index.d.ts +2 -0
  74. package/MenuBar/defaultConfig.d.ts +225 -0
  75. package/MenuBar/index.d.ts +2 -0
  76. package/MenuBar/viewSubmenu.d.ts +146 -0
  77. package/PCRTool/PCRTool.d.ts +2 -0
  78. package/Reflex/Browser.d.ts +19 -0
  79. package/Reflex/ReflexContainer.d.ts +63 -0
  80. package/Reflex/ReflexElement.d.ts +33 -0
  81. package/Reflex/ReflexEvents.d.ts +7 -0
  82. package/Reflex/ReflexSplitter.d.ts +33 -0
  83. package/Reflex/index.d.ts +4 -0
  84. package/RowItem/AnnotationContainerHolder.d.ts +2 -0
  85. package/RowItem/AnnotationPositioner.d.ts +7 -0
  86. package/RowItem/Axis.d.ts +2 -0
  87. package/RowItem/Caret/index.d.ts +2 -0
  88. package/RowItem/Chromatograms/Chromatogram.d.ts +1 -0
  89. package/RowItem/CutsiteSelectionLayers.d.ts +4 -0
  90. package/RowItem/Cutsites.d.ts +2 -0
  91. package/RowItem/DeletionLayers/index.d.ts +2 -0
  92. package/RowItem/Labels.d.ts +2 -0
  93. package/RowItem/Orf.d.ts +2 -0
  94. package/RowItem/Orfs.d.ts +2 -0
  95. package/RowItem/SelectionLayer/index.d.ts +2 -0
  96. package/RowItem/Sequence.d.ts +8 -0
  97. package/RowItem/StackedAnnotations/PointedAnnotation.d.ts +2 -0
  98. package/RowItem/StackedAnnotations/getStructuredBases.d.ts +17 -0
  99. package/RowItem/StackedAnnotations/index.d.ts +2 -0
  100. package/RowItem/StackedAnnotations/primerBases.d.ts +10 -0
  101. package/RowItem/Translations/AASliver.d.ts +2 -0
  102. package/RowItem/Translations/Translation.d.ts +2 -0
  103. package/RowItem/Translations/index.d.ts +2 -0
  104. package/RowItem/constants.d.ts +3 -0
  105. package/RowItem/getCutsiteLabelHeights.d.ts +8 -0
  106. package/RowItem/getXStartAndWidthFromNonCircularRange.d.ts +4 -0
  107. package/RowItem/getXStartAndWidthOfRangeWrtRow.d.ts +11 -0
  108. package/RowItem/getXStartAndWidthOfRowAnnotation.d.ts +6 -0
  109. package/RowItem/index.d.ts +1 -0
  110. package/RowItem/partOverhangs.d.ts +1 -0
  111. package/RowItem/utils.d.ts +4 -0
  112. package/RowView/estimateRowHeight.d.ts +6 -0
  113. package/RowView/index.d.ts +10 -0
  114. package/SimpleCircularOrLinearView.d.ts +2 -0
  115. package/SimpleOligoPreview.d.ts +7 -0
  116. package/StatusBar/MeltingTemp.d.ts +5 -0
  117. package/StatusBar/index.d.ts +15 -0
  118. package/ToolBar/ToolbarItem.d.ts +14 -0
  119. package/ToolBar/alignmentTool.d.ts +6 -0
  120. package/ToolBar/array_move.d.ts +1 -0
  121. package/ToolBar/cutsiteTool.d.ts +5 -0
  122. package/ToolBar/downloadTool.d.ts +5 -0
  123. package/ToolBar/editTool.d.ts +10 -0
  124. package/ToolBar/featureTool.d.ts +5 -0
  125. package/ToolBar/findTool.d.ts +2 -0
  126. package/ToolBar/importTool.d.ts +2 -0
  127. package/ToolBar/index.d.ts +2 -0
  128. package/ToolBar/inlineFindTool.d.ts +5 -0
  129. package/ToolBar/oligoTool.d.ts +5 -0
  130. package/ToolBar/orfTool.d.ts +5 -0
  131. package/ToolBar/partTool.d.ts +5 -0
  132. package/ToolBar/printTool.d.ts +6 -0
  133. package/ToolBar/redoTool.d.ts +5 -0
  134. package/ToolBar/saveTool.d.ts +5 -0
  135. package/ToolBar/undoTool.d.ts +5 -0
  136. package/ToolBar/versionHistoryTool.d.ts +5 -0
  137. package/ToolBar/visibilityTool.d.ts +5 -0
  138. package/VersionHistoryView/index.d.ts +23 -0
  139. package/addAlignment.d.ts +1 -0
  140. package/commands/getOveHotkeyDefs.d.ts +4 -0
  141. package/commands/index.d.ts +648 -0
  142. package/constants/constants.d.ts +2 -0
  143. package/constants/dnaToColor.d.ts +8 -0
  144. package/constants/draggableClassnames.d.ts +6 -0
  145. package/constants/findToolConstants.d.ts +1 -0
  146. package/constants/orfFrameToColorMap.d.ts +7 -0
  147. package/constants/rowviewContants.d.ts +3 -0
  148. package/constants/specialCutsiteFilterOptions.d.ts +31 -0
  149. package/constants.d.ts +1 -0
  150. package/createVectorEditor/index.d.ts +21 -0
  151. package/createVectorEditor/makeStore.d.ts +2 -0
  152. package/fileUtils.d.ts +12 -0
  153. package/helperComponents/AddOrEditAnnotationDialog/index.d.ts +6 -0
  154. package/helperComponents/AddOrEditFeatureDialog/index.d.ts +2 -0
  155. package/helperComponents/AddOrEditPartDialog/index.d.ts +2 -0
  156. package/helperComponents/AddOrEditPrimerDialog/EditCaretPosition.d.ts +15 -0
  157. package/helperComponents/AddOrEditPrimerDialog/index.d.ts +2 -0
  158. package/helperComponents/EnzymesDialog/index.d.ts +2 -0
  159. package/helperComponents/GoToDialog.d.ts +2 -0
  160. package/helperComponents/MergeFeaturesDialog/index.d.ts +2 -0
  161. package/helperComponents/MultipleSeqsDetectedOnImportDialog.d.ts +1 -0
  162. package/helperComponents/PinchHelper/PinchHelper.d.ts +6 -0
  163. package/helperComponents/PrintDialog/index.d.ts +2 -0
  164. package/helperComponents/PropertiesDialog/ColorPicker.d.ts +6 -0
  165. package/helperComponents/PropertiesDialog/CutsiteProperties.d.ts +2 -0
  166. package/helperComponents/PropertiesDialog/FeatureProperties.d.ts +2 -0
  167. package/helperComponents/PropertiesDialog/GenbankView.d.ts +2 -0
  168. package/helperComponents/PropertiesDialog/GeneralProperties.d.ts +2 -0
  169. package/helperComponents/PropertiesDialog/GenericAnnotationProperties.d.ts +10 -0
  170. package/helperComponents/PropertiesDialog/OrfProperties.d.ts +2 -0
  171. package/helperComponents/PropertiesDialog/PartProperties.d.ts +2 -0
  172. package/helperComponents/PropertiesDialog/PrimerProperties.d.ts +2 -0
  173. package/helperComponents/PropertiesDialog/SingleEnzymeCutsiteInfo.d.ts +12 -0
  174. package/helperComponents/PropertiesDialog/TranslationProperties.d.ts +2 -0
  175. package/helperComponents/PropertiesDialog/index.d.ts +10 -0
  176. package/helperComponents/PropertiesDialog/typeField.d.ts +7 -0
  177. package/helperComponents/PropertiesDialog/utils.d.ts +5 -0
  178. package/helperComponents/RemoveDuplicates/index.d.ts +2 -0
  179. package/helperComponents/RenameSequenceDialog.d.ts +2 -0
  180. package/helperComponents/SelectDialog.d.ts +2 -0
  181. package/helperComponents/UncontrolledSliderWithPlusMinusBtns.d.ts +13 -0
  182. package/helperComponents/VeWarning/index.d.ts +2 -0
  183. package/helperComponents/createSimpleDialog.d.ts +1 -0
  184. package/helperComponents/partTagSearch.d.ts +1 -0
  185. package/helperComponents/withHover.d.ts +11 -0
  186. package/html2canvas.esm-GLpiTZLt.cjs +7891 -0
  187. package/html2canvas.esm-nFNn58sx.js +7891 -0
  188. package/index.cjs.js +518 -398
  189. package/index.d.ts +25 -0
  190. package/index.es.js +520 -400
  191. package/index.umd.js +1354 -402
  192. package/package.json +2 -2
  193. package/redux/alignments.d.ts +9 -0
  194. package/redux/annotationLabelVisibility.d.ts +8 -0
  195. package/redux/annotationVisibility.d.ts +45 -0
  196. package/redux/annotationsToSupport.d.ts +8 -0
  197. package/redux/caretPosition.d.ts +4 -0
  198. package/redux/charWidth.d.ts +3 -0
  199. package/redux/copyOptions.d.ts +14 -0
  200. package/redux/createYourOwnEnzyme.d.ts +11 -0
  201. package/redux/deletionLayers.d.ts +5 -0
  202. package/redux/digestTool.d.ts +7 -0
  203. package/redux/featureLengthsToHide.d.ts +7 -0
  204. package/redux/findTool.d.ts +12 -0
  205. package/redux/frameTranslations.d.ts +13 -0
  206. package/redux/hoveredAnnotation.d.ts +4 -0
  207. package/redux/index.d.ts +20 -0
  208. package/redux/labelLineIntensity.d.ts +3 -0
  209. package/redux/labelSize.d.ts +3 -0
  210. package/redux/lastSavedId.d.ts +3 -0
  211. package/redux/middleware.d.ts +2 -0
  212. package/redux/minimumOrfSize.d.ts +4 -0
  213. package/redux/modalActions.d.ts +0 -0
  214. package/redux/panelsShown.d.ts +21 -0
  215. package/redux/partLengthsToHide.d.ts +7 -0
  216. package/redux/primerLengthsToHide.d.ts +7 -0
  217. package/redux/propertiesTool.d.ts +6 -0
  218. package/redux/readOnly.d.ts +4 -0
  219. package/redux/replacementLayers.d.ts +5 -0
  220. package/redux/restrictionEnzymes.d.ts +13 -0
  221. package/redux/selectedAnnotations.d.ts +13 -0
  222. package/redux/selectedPartTags.d.ts +3 -0
  223. package/redux/selectionLayer.d.ts +7 -0
  224. package/redux/sequenceData/circular.d.ts +3 -0
  225. package/redux/sequenceData/description.d.ts +3 -0
  226. package/redux/sequenceData/features.d.ts +4 -0
  227. package/redux/sequenceData/index.d.ts +10 -0
  228. package/redux/sequenceData/lineageLines.d.ts +2 -0
  229. package/redux/sequenceData/materiallyAvailable.d.ts +3 -0
  230. package/redux/sequenceData/name.d.ts +3 -0
  231. package/redux/sequenceData/parts.d.ts +4 -0
  232. package/redux/sequenceData/primers.d.ts +4 -0
  233. package/redux/sequenceData/sequence.d.ts +3 -0
  234. package/redux/sequenceData/sharedActionCreators.d.ts +0 -0
  235. package/redux/sequenceData/translations.d.ts +4 -0
  236. package/redux/sequenceData/upsertDeleteActionGenerator.d.ts +3 -0
  237. package/redux/sequenceDataHistory.d.ts +8 -0
  238. package/redux/showGCContent.d.ts +3 -0
  239. package/redux/toolBar.d.ts +6 -0
  240. package/redux/uppercaseSequenceMapFont.d.ts +3 -0
  241. package/redux/useAdditionalOrfStartCodons.d.ts +3 -0
  242. package/redux/utils/addDashesForMatchStartAndEndForTracks/index.d.ts +1 -0
  243. package/redux/utils/addMetaToActionCreators.d.ts +1 -0
  244. package/redux/utils/createMergedDefaultStateReducer.d.ts +4 -0
  245. package/redux/utils/createMetaAction.d.ts +1 -0
  246. package/redux/versionHistory.d.ts +5 -0
  247. package/selectors/annotationLabelVisibility.d.ts +2 -0
  248. package/selectors/annotationSearchSelector.d.ts +7 -0
  249. package/selectors/cdsFeaturesSelector.d.ts +6 -0
  250. package/selectors/circularSelector.d.ts +1 -0
  251. package/selectors/cutsiteLabelColorSelector.d.ts +6 -0
  252. package/selectors/cutsitesByRangeSelector.d.ts +0 -0
  253. package/selectors/cutsitesSelector.d.ts +14 -0
  254. package/selectors/editorSelector.d.ts +2 -0
  255. package/selectors/featuresSelector.d.ts +6 -0
  256. package/selectors/filteredCutsitesSelector.d.ts +6 -0
  257. package/selectors/filteredFeaturesSelector.d.ts +6 -0
  258. package/selectors/filteredPartsSelector.d.ts +6 -0
  259. package/selectors/filteredPrimersSelector.d.ts +6 -0
  260. package/selectors/filteredRestrictionEnzymesSelector.d.ts +2 -0
  261. package/selectors/getAdditionalEnzymesSelector.d.ts +6 -0
  262. package/selectors/index.d.ts +41 -0
  263. package/selectors/isEnzymeFilterAndSelector.d.ts +2 -0
  264. package/selectors/minimumOrfSizeSelector.d.ts +2 -0
  265. package/selectors/orfsSelector.d.ts +26 -0
  266. package/selectors/partsSelector.d.ts +6 -0
  267. package/selectors/primersSelector.d.ts +6 -0
  268. package/selectors/restrictionEnzymesSelector.d.ts +6 -0
  269. package/selectors/searchLayersSelector.d.ts +6 -0
  270. package/selectors/selectedAnnotationsSelector.d.ts +2 -0
  271. package/selectors/selectedCutsitesSelector.d.ts +12 -0
  272. package/selectors/sequenceDataSelector.d.ts +2 -0
  273. package/selectors/sequenceLengthSelector.d.ts +1 -0
  274. package/selectors/sequenceSelector.d.ts +1 -0
  275. package/selectors/tagsToBoldSelector.d.ts +2 -0
  276. package/selectors/translationSearchMatchesSelector.d.ts +6 -0
  277. package/selectors/translationsRawSelector.d.ts +6 -0
  278. package/selectors/translationsSelector.d.ts +16 -0
  279. package/src/ToolBar/index.js +12 -12
  280. package/style.css +33 -4
  281. package/updateEditor.d.ts +3 -0
  282. package/utils/PassThrough.d.ts +3 -0
  283. package/utils/addWrappedAddons.d.ts +1 -0
  284. package/utils/annotationTypes.d.ts +6 -0
  285. package/utils/arrayUtils.d.ts +3 -0
  286. package/utils/calculateTickMarkPositionsForGivenRange.d.ts +7 -0
  287. package/utils/cleanSequenceData_DEPRECATED/arrayToObjWithIds.d.ts +1 -0
  288. package/utils/combineReducersDontIgnoreKeys.d.ts +1 -0
  289. package/utils/commandUtils.d.ts +1 -0
  290. package/utils/editorUtils.d.ts +36 -0
  291. package/utils/getAnnotationClassnames.d.ts +6 -0
  292. package/utils/getAnnotationNameAndStartStopString.d.ts +14 -0
  293. package/utils/getVisibleStartEnd.d.ts +7 -0
  294. package/utils/massageTickSpacing.d.ts +1 -0
  295. package/utils/onlyUpdateForKeysDeep.d.ts +2 -0
  296. package/utils/prepareRowData.d.ts +6 -0
  297. package/utils/proteinUtils.d.ts +1 -0
  298. package/utils/pureNoFunc.d.ts +2 -0
  299. package/utils/selectionLayer.d.ts +5 -0
  300. package/utils/shouldRerender.d.ts +2 -0
  301. package/utils/showFileDialog.d.ts +4 -0
  302. package/utils/updateLabelsForInViewFeatures.d.ts +3 -0
  303. package/utils/updateLabelsForInViewFeaturesCircView.d.ts +0 -0
  304. package/utils/useAAColorType.d.ts +2 -0
  305. package/utils/useAnnotationLimits.d.ts +14 -0
  306. package/utils/useChromatogramPrefs.d.ts +7 -0
  307. package/utils/useLadders.d.ts +2 -0
  308. package/utils/useMeltingTemp.d.ts +2 -0
  309. package/utils/useTmType.d.ts +2 -0
  310. package/withEditorInteractions/Keyboard.d.ts +16 -0
  311. package/withEditorInteractions/clickAndDragUtils.d.ts +67 -0
  312. package/withEditorInteractions/createSequenceInputPopup.d.ts +1 -0
  313. package/withEditorInteractions/getBpsPerRow.d.ts +9 -0
  314. package/withEditorInteractions/index.d.ts +2 -0
  315. package/withEditorInteractions/isElementInViewport.d.ts +2 -0
  316. package/withEditorInteractions/moveCaret.d.ts +10 -0
  317. package/withEditorProps/index.d.ts +17 -0

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