@teselagen/ove 0.3.54 → 0.3.56

package/index.umd.js

@@ -27119,10 +27119,10 @@ var __async = (__this, __arguments, generator) => {
     /* istanbul ignore next */
     Object.getOwnPropertyNames
   );
-  function toPrimitive$3(value) {
+  function toPrimitive$2(value) {
     return value === null ? null : typeof value === "object" ? "" + value : value;
   }
-  __name(toPrimitive$3, "toPrimitive$3");
+  __name(toPrimitive$2, "toPrimitive$2");
   function hasProp(target, prop2) {
     return objectPrototype$2.hasOwnProperty.call(target, prop2);
   }
@@ -28019,7 +28019,7 @@ var __async = (__this, __arguments, generator) => {
       return this.name_ + "[" + this.value_ + "]";
     }, "toString");
     _proto.valueOf = /* @__PURE__ */ __name(function valueOf() {
-      return toPrimitive$3(this.get());
+      return toPrimitive$2(this.get());
     }, "valueOf");
     _proto[_Symbol$toPrimitive] = function() {
       return this.valueOf();
@@ -28204,7 +28204,7 @@ var __async = (__this, __arguments, generator) => {
       return this.name_ + "[" + this.derivation.toString() + "]";
     }, "toString");
     _proto.valueOf = /* @__PURE__ */ __name(function valueOf() {
-      return toPrimitive$3(this.get());
+      return toPrimitive$2(this.get());
     }, "valueOf");
     _proto[_Symbol$toPrimitive$1] = function() {
       return this.valueOf();
@@ -44862,11 +44862,20 @@ ${latestSubscriptionCallbackError.current.stack}
       return true;
     }
   }, "_fails");
-  var _descriptors = !_fails(function() {
-    return Object.defineProperty({}, "a", { get: function() {
-      return 7;
-    } }).a != 7;
-  });
+  var _descriptors;
+  var hasRequired_descriptors;
+  function require_descriptors() {
+    if (hasRequired_descriptors)
+      return _descriptors;
+    hasRequired_descriptors = 1;
+    _descriptors = !_fails(function() {
+      return Object.defineProperty({}, "a", { get: function() {
+        return 7;
+      } }).a != 7;
+    });
+    return _descriptors;
+  }
+  __name(require_descriptors, "require_descriptors");
   var _domCreate;
   var hasRequired_domCreate;
   function require_domCreate() {
@@ -44882,7 +44891,7 @@ ${latestSubscriptionCallbackError.current.stack}
     return _domCreate;
   }
   __name(require_domCreate, "require_domCreate");
-  var _ie8DomDefine = !_descriptors && !_fails(function() {
+  var _ie8DomDefine = !require_descriptors() && !_fails(function() {
     return Object.defineProperty(require_domCreate()("div"), "a", { get: function() {
       return 7;
     } }).a != 7;
@@ -44900,25 +44909,33 @@ ${latestSubscriptionCallbackError.current.stack}
       return val2;
     throw TypeError("Can't convert object to primitive value");
   }, "_toPrimitive$1");
-  var anObject$5 = _anObject;
-  var IE8_DOM_DEFINE$1 = _ie8DomDefine;
-  var toPrimitive$2 = _toPrimitive$1;
-  var dP$3 = Object.defineProperty;
-  _objectDp.f = _descriptors ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty2(O2, P2, Attributes) {
-    anObject$5(O2);
-    P2 = toPrimitive$2(P2, true);
-    anObject$5(Attributes);
-    if (IE8_DOM_DEFINE$1)
-      try {
-        return dP$3(O2, P2, Attributes);
-      } catch (e2) {
-      }
-    if ("get" in Attributes || "set" in Attributes)
-      throw TypeError("Accessors not supported!");
-    if ("value" in Attributes)
-      O2[P2] = Attributes.value;
-    return O2;
-  }, "defineProperty");
+  var hasRequired_objectDp;
+  function require_objectDp() {
+    if (hasRequired_objectDp)
+      return _objectDp;
+    hasRequired_objectDp = 1;
+    var anObject2 = _anObject;
+    var IE8_DOM_DEFINE2 = _ie8DomDefine;
+    var toPrimitive2 = _toPrimitive$1;
+    var dP2 = Object.defineProperty;
+    _objectDp.f = require_descriptors() ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty2(O2, P2, Attributes) {
+      anObject2(O2);
+      P2 = toPrimitive2(P2, true);
+      anObject2(Attributes);
+      if (IE8_DOM_DEFINE2)
+        try {
+          return dP2(O2, P2, Attributes);
+        } catch (e2) {
+        }
+      if ("get" in Attributes || "set" in Attributes)
+        throw TypeError("Accessors not supported!");
+      if ("value" in Attributes)
+        O2[P2] = Attributes.value;
+      return O2;
+    }, "defineProperty");
+    return _objectDp;
+  }
+  __name(require_objectDp, "require_objectDp");
   var _propertyDesc = /* @__PURE__ */ __name(function(bitmap, value) {
     return {
       enumerable: !(bitmap & 1),
@@ -44927,9 +44944,9 @@ ${latestSubscriptionCallbackError.current.stack}
       value
     };
   }, "_propertyDesc");
-  var dP$2 = _objectDp;
+  var dP$2 = require_objectDp();
   var createDesc$3 = _propertyDesc;
-  var _hide = _descriptors ? function(object2, key2, value) {
+  var _hide = require_descriptors() ? function(object2, key2, value) {
     return dP$2.f(object2, key2, createDesc$3(1, value));
   } : function(object2, key2, value) {
     object2[key2] = value;
@@ -45001,25 +45018,16 @@ ${latestSubscriptionCallbackError.current.stack}
   var _cof = /* @__PURE__ */ __name(function(it) {
     return toString$4.call(it).slice(8, -1);
   }, "_cof");
-  var _iobject;
-  var hasRequired_iobject;
-  function require_iobject() {
-    if (hasRequired_iobject)
-      return _iobject;
-    hasRequired_iobject = 1;
-    var cof2 = _cof;
-    _iobject = Object("z").propertyIsEnumerable(0) ? Object : function(it) {
-      return cof2(it) == "String" ? it.split("") : Object(it);
-    };
-    return _iobject;
-  }
-  __name(require_iobject, "require_iobject");
+  var cof$2 = _cof;
+  var _iobject = Object("z").propertyIsEnumerable(0) ? Object : function(it) {
+    return cof$2(it) == "String" ? it.split("") : Object(it);
+  };
   var _defined = /* @__PURE__ */ __name(function(it) {
     if (it == void 0)
       throw TypeError("Can't call method on  " + it);
     return it;
   }, "_defined");
-  var IObject = require_iobject();
+  var IObject = _iobject;
   var defined$2 = _defined;
   var _toIobject = /* @__PURE__ */ __name(function(it) {
     return IObject(defined$2(it));
@@ -45116,15 +45124,7 @@ ${latestSubscriptionCallbackError.current.stack}
   var _objectGops = {};
   _objectGops.f = Object.getOwnPropertySymbols;
   var _objectPie = {};
-  var hasRequired_objectPie;
-  function require_objectPie() {
-    if (hasRequired_objectPie)
-      return _objectPie;
-    hasRequired_objectPie = 1;
-    _objectPie.f = {}.propertyIsEnumerable;
-    return _objectPie;
-  }
-  __name(require_objectPie, "require_objectPie");
+  _objectPie.f = {}.propertyIsEnumerable;
   var defined$1 = _defined;
   var _toObject = /* @__PURE__ */ __name(function(it) {
     return Object(defined$1(it));
@@ -45135,12 +45135,12 @@ ${latestSubscriptionCallbackError.current.stack}
     if (hasRequired_objectAssign)
       return _objectAssign;
     hasRequired_objectAssign = 1;
-    var DESCRIPTORS2 = _descriptors;
+    var DESCRIPTORS2 = require_descriptors();
     var getKeys2 = _objectKeys;
     var gOPS2 = _objectGops;
-    var pIE2 = require_objectPie();
+    var pIE2 = _objectPie;
     var toObject2 = _toObject;
-    var IObject2 = require_iobject();
+    var IObject2 = _iobject;
     var $assign = Object.assign;
     _objectAssign = !$assign || _fails(function() {
       var A2 = {};
@@ -45201,10 +45201,10 @@ ${latestSubscriptionCallbackError.current.stack}
   }, "_iterStep");
   var _iterators = {};
   var _redefine = _hide;
-  var dP$1 = _objectDp;
+  var dP$1 = require_objectDp();
   var anObject$4 = _anObject;
   var getKeys$1 = _objectKeys;
-  var _objectDps = _descriptors ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties2(O2, Properties2) {
+  var _objectDps = require_descriptors() ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties2(O2, Properties2) {
     anObject$4(O2);
     var keys2 = getKeys$1(Properties2);
     var length = keys2.length;
@@ -45271,7 +45271,7 @@ ${latestSubscriptionCallbackError.current.stack}
   };
   $exports.store = store$2;
   var _wksExports = _wks.exports;
-  var def = _objectDp.f;
+  var def = require_objectDp().f;
   var has$b = _has;
   var TAG$1 = _wksExports("toStringTag");
   var _setToStringTag = /* @__PURE__ */ __name(function(it, tag, stat) {
@@ -45544,7 +45544,7 @@ ${latestSubscriptionCallbackError.current.stack}
   var _isArrayIter = /* @__PURE__ */ __name(function(it) {
     return it !== void 0 && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
   }, "_isArrayIter");
-  var $defineProperty$1 = _objectDp;
+  var $defineProperty$1 = require_objectDp();
   var createDesc$2 = _propertyDesc;
   var _createProperty = /* @__PURE__ */ __name(function(object2, index2, value) {
     if (index2 in object2)
@@ -45673,7 +45673,7 @@ ${latestSubscriptionCallbackError.current.stack}
     }
   }, "_default$8");
   var $export$3 = _export;
-  $export$3($export$3.S + $export$3.F * !_descriptors, "Object", { defineProperty: _objectDp.f });
+  $export$3($export$3.S + $export$3.F * !require_descriptors(), "Object", { defineProperty: require_objectDp().f });
   var $Object$1 = _coreExports.Object;
   var defineProperty$6 = /* @__PURE__ */ __name(function defineProperty2(it, key2, desc) {
     return $Object$1.defineProperty(it, key2, desc);
@@ -45714,7 +45714,7 @@ ${latestSubscriptionCallbackError.current.stack}
   var META$1 = _uid("meta");
   var isObject$5 = _isObject;
   var has$9 = _has;
-  var setDesc = _objectDp.f;
+  var setDesc = require_objectDp().f;
   var id$1 = 0;
   var isExtensible = Object.isExtensible || function() {
     return true;
@@ -45767,7 +45767,7 @@ ${latestSubscriptionCallbackError.current.stack}
   var _metaExports = _meta.exports;
   var core = _coreExports;
   var wksExt$1 = _wksExt;
-  var defineProperty$4 = _objectDp.f;
+  var defineProperty$4 = require_objectDp().f;
   var _wksDefine = /* @__PURE__ */ __name(function(name2) {
     var $Symbol2 = core.Symbol || (core.Symbol = {});
     if (name2.charAt(0) != "_" && !(name2 in $Symbol2))
@@ -45775,7 +45775,7 @@ ${latestSubscriptionCallbackError.current.stack}
   }, "_wksDefine");
   var getKeys = _objectKeys;
   var gOPS$1 = _objectGops;
-  var pIE$1 = require_objectPie();
+  var pIE$1 = _objectPie;
   var _enumKeys = /* @__PURE__ */ __name(function(it) {
     var result = getKeys(it);
     var getSymbols2 = gOPS$1.f;
@@ -45816,14 +45816,14 @@ ${latestSubscriptionCallbackError.current.stack}
     return windowNames && toString$3.call(it) == "[object Window]" ? getWindowNames(it) : gOPN$1(toIObject$2(it));
   }, "getOwnPropertyNames");
   var _objectGopd = {};
-  var pIE = require_objectPie();
+  var pIE = _objectPie;
   var createDesc$1 = _propertyDesc;
   var toIObject$1 = _toIobject;
   var toPrimitive$1 = _toPrimitive$1;
   var has$8 = _has;
   var IE8_DOM_DEFINE = _ie8DomDefine;
   var gOPD$2 = Object.getOwnPropertyDescriptor;
-  _objectGopd.f = _descriptors ? gOPD$2 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor2(O2, P2) {
+  _objectGopd.f = require_descriptors() ? gOPD$2 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor2(O2, P2) {
     O2 = toIObject$1(O2);
     P2 = toPrimitive$1(P2, true);
     if (IE8_DOM_DEFINE)
@@ -45836,7 +45836,7 @@ ${latestSubscriptionCallbackError.current.stack}
   }, "getOwnPropertyDescriptor");
   var global$1 = _globalExports;
   var has$7 = _has;
-  var DESCRIPTORS = _descriptors;
+  var DESCRIPTORS = require_descriptors();
   var $export$2 = _export;
   var redefine = _redefine;
   var META = _metaExports.KEY;
@@ -45859,7 +45859,7 @@ ${latestSubscriptionCallbackError.current.stack}
   var gOPNExt = _objectGopnExt;
   var $GOPD = _objectGopd;
   var $GOPS = _objectGops;
-  var $DP = _objectDp;
+  var $DP = require_objectDp();
   var $keys$1 = _objectKeys;
   var gOPD$1 = $GOPD.f;
   var dP = $DP.f;
@@ -45996,7 +45996,7 @@ ${latestSubscriptionCallbackError.current.stack}
     $GOPD.f = $getOwnPropertyDescriptor;
     $DP.f = $defineProperty;
     _objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
-    require_objectPie().f = $propertyIsEnumerable;
+    _objectPie.f = $propertyIsEnumerable;
     $GOPS.f = $getOwnPropertySymbols;
     if (DESCRIPTORS && !_library) {
       redefine(ObjectProto, "propertyIsEnumerable", $propertyIsEnumerable);
@@ -86346,7 +86346,7 @@ ${latestSubscriptionCallbackError.current.stack}
           reduxFormCellValidation
         } = this.props;
         const { newEnts, validationErrors } = this.formatAndValidateEntities(
-          initialEntities || entities || _origEntities
+          initialEntities || (entities && entities.length ? entities : _origEntities)
         );
         change2("reduxFormEntities", newEnts);
         const toKeep = {};
@@ -86725,7 +86725,7 @@ ${latestSubscriptionCallbackError.current.stack}
       }, "updateEntitiesHelper"));
       __publicField(this, "getRowCopyText", /* @__PURE__ */ __name((rowEl, { specificColumn } = {}) => {
         if (!rowEl)
-          return;
+          return [];
         const textContent = [];
         const jsonText = [];
         lodashExports.forEach(rowEl.children, (cellEl) => {
@@ -87971,6 +87971,26 @@ ${latestSubscriptionCallbackError.current.stack}
           return "";
         return stringText;
       }, "getCopyTextForCell"));
+      __publicField(this, "addEditableTableEntities", /* @__PURE__ */ __name((incomingEnts) => {
+        const { entities = [], reduxFormCellValidation } = computePresets(
+          this.props
+        );
+        this.updateEntitiesHelper(entities, (entities2) => {
+          const newEntities = incomingEnts.map((e2) => __spreadProps(__spreadValues({}, e2), {
+            id: e2.id || nanoid(),
+            _isClean: false
+          }));
+          const { newEnts, validationErrors } = this.formatAndValidateEntities(
+            newEntities,
+            {
+              useDefaultValues: true,
+              indexToStartAt: entities2.length
+            }
+          );
+          entities2.splice(entities2.length, 0, ...newEnts);
+          this.updateValidation(entities2, __spreadValues(__spreadValues({}, reduxFormCellValidation), validationErrors));
+        });
+      }, "addEditableTableEntities"));
       __publicField(this, "insertRows", /* @__PURE__ */ __name(({ above, numRows = 1, appendToBottom } = {}) => {
         const { entities = [], reduxFormCellValidation } = computePresets(
           this.props
@@ -88363,6 +88383,9 @@ ${latestSubscriptionCallbackError.current.stack}
           )
         );
       }, "renderColumnHeader"));
+      if (this.props.helperProp) {
+        this.props.helperProp.addEditableTableEntities = this.addEditableTableEntities;
+      }
       this.hotkeyEnabler = withHotkeys(__spreadProps(__spreadValues({
         moveUpARow: {
           global: false,
@@ -88960,16 +88983,25 @@ ${latestSubscriptionCallbackError.current.stack}
                     this.table = n2;
                 },
                 additionalBodyEl: isCellEditable && !onlyShowRowsWErrors && /* @__PURE__ */ React$2.createElement(
-                  Button,
+                  "div",
                   {
-                    icon: "add",
-                    style: { marginTop: "auto" },
-                    onClick: () => {
-                      this.insertRows({ numRows: 10, appendToBottom: true });
-                    },
-                    minimal: true
+                    style: {
+                      width: "100%",
+                      display: "flex",
+                      justifyContent: "center"
+                    }
                   },
-                  "Add 10 Rows"
+                  /* @__PURE__ */ React$2.createElement(
+                    Button,
+                    {
+                      icon: "add",
+                      onClick: () => {
+                        this.insertRows({ numRows: 10, appendToBottom: true });
+                      },
+                      minimal: true
+                    },
+                    "Add 10 Rows"
+                  )
                 ),
                 className: classNames$1({
                   isCellEditable,
@@ -91776,6 +91808,7 @@ ${latestSubscriptionCallbackError.current.stack}
         isSimple: true,
         keepDirtyOnReinitialize: true,
         isCellEditable: true,
+        initialEntities: (initialEntities ? initialEntities : data) || [],
         entities: (initialEntities ? initialEntities : data) || [],
         schema: validateAgainstSchema
       }
@@ -113984,7 +114017,7 @@ ${latestSubscriptionCallbackError.current.stack}
     "primers",
     "guides"
   ];
-  function filterSequenceString(sequenceString, {
+  function filterSequenceString(sequenceString = "", {
     additionalValidChars = "",
     isOligo: isOligo2,
     name: name2,
@@ -123682,12 +123715,6 @@ ${latestSubscriptionCallbackError.current.stack}
       sequence2.proteinSize = sequence2.proteinSequence.length;
     } else {
       const temp = sequence2.sequence;
-      if (!sequence2.isOligo) {
-        sequence2.sequence = sequence2.sequence.replace(
-          /u/gi,
-          (u2) => u2 === "U" ? "T" : "t"
-        );
-      }
       if (temp !== sequence2.sequence && !sequence2.isDNA && !sequence2.isProtein && sequence2.isRNA !== false) {
         sequence2.type = "RNA";
         sequence2.sequence = temp;
@@ -155200,7 +155227,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
   }
   __name(showFileDialog, "showFileDialog");
   const name = "@teselagen/ove";
-  const version = "0.3.53";
+  const version = "0.3.55";
   const main = "./src/index.js";
   const exports$1 = {
     ".": {
@@ -163266,7 +163293,7 @@ Part of ${annotation.translationType} Translation from BPs ${annotation.start +
         "g",
         __spreadValues(__spreadProps(__spreadValues({
           transform: transform2,
-          title: noTitle ? null : titleText
+          "data-title": noTitle ? null : titleText
         }, avoidOverlapWith), {
           key: isNotLocation ? "notLocation" : "location--" + annotation.id + "--" + i2
         }), sharedProps),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.3.54",
+  "version": "0.3.56",
   "main": "./src/index.js",
   "exports": {
     ".": {
@@ -13,12 +13,12 @@
     "node": "16.20.2"
   },
   "dependencies": {
-    "@teselagen/sequence-utils": "0.3.12",
+    "@teselagen/sequence-utils": "0.3.13",
     "@teselagen/range-utils": "0.3.7",
-    "@teselagen/ui": "0.3.42",
+    "@teselagen/ui": "0.3.44",
     "@teselagen/file-utils": "0.3.9",
     "@teselagen/bounce-loader": "0.3.11",
-    "@teselagen/bio-parsers": "0.4.6",
+    "@teselagen/bio-parsers": "0.4.7",
     "@blueprintjs/core": "3.52.0",
     "@blueprintjs/datetime": "3.23.19",
     "@blueprintjs/icons": "3.33.0",

package/src/CircularView/drawAnnotations.js

@@ -380,8 +380,7 @@ function DrawAnnotationInner({
     return (
       <g
         transform={transform}
-        // data-title={noTitle ? null : titleText}
-        title={noTitle ? null : titleText}
+        data-title={noTitle ? null : titleText}
         {...avoidOverlapWith}
         key={
           isNotLocation