@teselagen/ove 0.3.50 → 0.3.51

package/index.cjs.js

@@ -6817,10 +6817,10 @@ var ownKeys$7 = typeof Reflect !== "undefined" && Reflect.ownKeys ? Reflect.ownK
   /* istanbul ignore next */
   Object.getOwnPropertyNames
 );
-function toPrimitive$2(value) {
+function toPrimitive$3(value) {
   return value === null ? null : typeof value === "object" ? "" + value : value;
 }
-__name(toPrimitive$2, "toPrimitive$2");
+__name(toPrimitive$3, "toPrimitive$3");
 function hasProp(target, prop2) {
   return objectPrototype$1.hasOwnProperty.call(target, prop2);
 }
@@ -7717,7 +7717,7 @@ var ObservableValue = /* @__PURE__ */ function(_Atom) {
     return this.name_ + "[" + this.value_ + "]";
   }, "toString");
   _proto.valueOf = /* @__PURE__ */ __name(function valueOf() {
-    return toPrimitive$2(this.get());
+    return toPrimitive$3(this.get());
   }, "valueOf");
   _proto[_Symbol$toPrimitive] = function() {
     return this.valueOf();
@@ -7902,7 +7902,7 @@ var ComputedValue = /* @__PURE__ */ function() {
     return this.name_ + "[" + this.derivation.toString() + "]";
   }, "toString");
   _proto.valueOf = /* @__PURE__ */ __name(function valueOf() {
-    return toPrimitive$2(this.get());
+    return toPrimitive$3(this.get());
   }, "valueOf");
   _proto[_Symbol$toPrimitive$1] = function() {
     return this.valueOf();
@@ -12536,7 +12536,7 @@ lodash.exports;
         "^" + funcToString2.call(hasOwnProperty2).replace(reRegExpChar2, "\\$&").replace(/hasOwnProperty|(function).*?(?=\\\()| for .+?(?=\\\])/g, "$1.*?") + "$"
       );
       var Buffer2 = moduleExports2 ? context.Buffer : undefined$12, Symbol2 = context.Symbol, Uint8Array2 = context.Uint8Array, allocUnsafe2 = Buffer2 ? Buffer2.allocUnsafe : undefined$12, getPrototype2 = overArg2(Object2.getPrototypeOf, Object2), objectCreate2 = Object2.create, propertyIsEnumerable3 = objectProto2.propertyIsEnumerable, splice3 = arrayProto2.splice, spreadableSymbol2 = Symbol2 ? Symbol2.isConcatSpreadable : undefined$12, symIterator = Symbol2 ? Symbol2.iterator : undefined$12, symToStringTag2 = Symbol2 ? Symbol2.toStringTag : undefined$12;
-      var defineProperty5 = function() {
+      var defineProperty6 = function() {
         try {
           var func = getNative2(Object2, "defineProperty");
           func({}, "", {});
@@ -12976,8 +12976,8 @@ lodash.exports;
       }
       __name(baseAssignIn2, "baseAssignIn");
       function baseAssignValue2(object3, key, value) {
-        if (key == "__proto__" && defineProperty5) {
-          defineProperty5(object3, key, {
+        if (key == "__proto__" && defineProperty6) {
+          defineProperty6(object3, key, {
             "configurable": true,
             "enumerable": true,
             "value": value,
@@ -13710,8 +13710,8 @@ lodash.exports;
         metaMap.set(func, data);
         return func;
       };
-      var baseSetToString2 = !defineProperty5 ? identity4 : function(func, string2) {
-        return defineProperty5(func, "toString", {
+      var baseSetToString2 = !defineProperty6 ? identity4 : function(func, string2) {
+        return defineProperty6(func, "toString", {
           "configurable": true,
           "enumerable": false,
           "value": constant2(string2),
@@ -18236,20 +18236,11 @@ var _fails = /* @__PURE__ */ __name(function(exec) {
     return true;
   }
 }, "_fails");
-var _descriptors;
-var hasRequired_descriptors;
-function require_descriptors() {
-  if (hasRequired_descriptors)
-    return _descriptors;
-  hasRequired_descriptors = 1;
-  _descriptors = !_fails(function() {
-    return Object.defineProperty({}, "a", { get: function() {
-      return 7;
-    } }).a != 7;
-  });
-  return _descriptors;
-}
-__name(require_descriptors, "require_descriptors");
+var _descriptors = !_fails(function() {
+  return Object.defineProperty({}, "a", { get: function() {
+    return 7;
+  } }).a != 7;
+});
 var _domCreate;
 var hasRequired_domCreate;
 function require_domCreate() {
@@ -18265,20 +18256,11 @@ function require_domCreate() {
   return _domCreate;
 }
 __name(require_domCreate, "require_domCreate");
-var _ie8DomDefine;
-var hasRequired_ie8DomDefine;
-function require_ie8DomDefine() {
-  if (hasRequired_ie8DomDefine)
-    return _ie8DomDefine;
-  hasRequired_ie8DomDefine = 1;
-  _ie8DomDefine = !require_descriptors() && !_fails(function() {
-    return Object.defineProperty(require_domCreate()("div"), "a", { get: function() {
-      return 7;
-    } }).a != 7;
-  });
-  return _ie8DomDefine;
-}
-__name(require_ie8DomDefine, "require_ie8DomDefine");
+var _ie8DomDefine = !_descriptors && !_fails(function() {
+  return Object.defineProperty(require_domCreate()("div"), "a", { get: function() {
+    return 7;
+  } }).a != 7;
+});
 var isObject$d = _isObject;
 var _toPrimitive$1 = /* @__PURE__ */ __name(function(it, S2) {
   if (!isObject$d(it))
@@ -18292,33 +18274,25 @@ var _toPrimitive$1 = /* @__PURE__ */ __name(function(it, S2) {
     return val2;
   throw TypeError("Can't convert object to primitive value");
 }, "_toPrimitive$1");
-var hasRequired_objectDp;
-function require_objectDp() {
-  if (hasRequired_objectDp)
-    return _objectDp;
-  hasRequired_objectDp = 1;
-  var anObject2 = _anObject;
-  var IE8_DOM_DEFINE2 = require_ie8DomDefine();
-  var toPrimitive2 = _toPrimitive$1;
-  var dP2 = Object.defineProperty;
-  _objectDp.f = require_descriptors() ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty5(O2, P2, Attributes) {
-    anObject2(O2);
-    P2 = toPrimitive2(P2, true);
-    anObject2(Attributes);
-    if (IE8_DOM_DEFINE2)
-      try {
-        return dP2(O2, P2, Attributes);
-      } catch (e2) {
-      }
-    if ("get" in Attributes || "set" in Attributes)
-      throw TypeError("Accessors not supported!");
-    if ("value" in Attributes)
-      O2[P2] = Attributes.value;
-    return O2;
-  }, "defineProperty");
-  return _objectDp;
-}
-__name(require_objectDp, "require_objectDp");
+var anObject$5 = _anObject;
+var IE8_DOM_DEFINE$1 = _ie8DomDefine;
+var toPrimitive$2 = _toPrimitive$1;
+var dP$3 = Object.defineProperty;
+_objectDp.f = _descriptors ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty2(O2, P2, Attributes) {
+  anObject$5(O2);
+  P2 = toPrimitive$2(P2, true);
+  anObject$5(Attributes);
+  if (IE8_DOM_DEFINE$1)
+    try {
+      return dP$3(O2, P2, Attributes);
+    } catch (e2) {
+    }
+  if ("get" in Attributes || "set" in Attributes)
+    throw TypeError("Accessors not supported!");
+  if ("value" in Attributes)
+    O2[P2] = Attributes.value;
+  return O2;
+}, "defineProperty");
 var _propertyDesc = /* @__PURE__ */ __name(function(bitmap, value) {
   return {
     enumerable: !(bitmap & 1),
@@ -18327,9 +18301,9 @@ var _propertyDesc = /* @__PURE__ */ __name(function(bitmap, value) {
     value
   };
 }, "_propertyDesc");
-var dP$2 = require_objectDp();
+var dP$2 = _objectDp;
 var createDesc$3 = _propertyDesc;
-var _hide = require_descriptors() ? function(object3, key, value) {
+var _hide = _descriptors ? function(object3, key, value) {
   return dP$2.f(object3, key, createDesc$3(1, value));
 } : function(object3, key, value) {
   object3[key] = value;
@@ -18518,7 +18492,7 @@ function require_objectAssign() {
   if (hasRequired_objectAssign)
     return _objectAssign;
   hasRequired_objectAssign = 1;
-  var DESCRIPTORS2 = require_descriptors();
+  var DESCRIPTORS2 = _descriptors;
   var getKeys2 = _objectKeys;
   var gOPS2 = _objectGops;
   var pIE2 = _objectPie;
@@ -18584,10 +18558,10 @@ var _iterStep = /* @__PURE__ */ __name(function(done, value) {
 }, "_iterStep");
 var _iterators = {};
 var _redefine = _hide;
-var dP$1 = require_objectDp();
+var dP$1 = _objectDp;
 var anObject$4 = _anObject;
 var getKeys$1 = _objectKeys;
-var _objectDps = require_descriptors() ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties(O2, Properties2) {
+var _objectDps = _descriptors ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties(O2, Properties2) {
   anObject$4(O2);
   var keys5 = getKeys$1(Properties2);
   var length = keys5.length;
@@ -18654,7 +18628,7 @@ var $exports = _wks.exports = function(name2) {
 };
 $exports.store = store$2;
 var _wksExports = _wks.exports;
-var def = require_objectDp().f;
+var def = _objectDp.f;
 var has$c = _has;
 var TAG$1 = _wksExports("toStringTag");
 var _setToStringTag = /* @__PURE__ */ __name(function(it, tag, stat) {
@@ -18927,7 +18901,7 @@ var ArrayProto = Array.prototype;
 var _isArrayIter = /* @__PURE__ */ __name(function(it) {
   return it !== void 0 && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
 }, "_isArrayIter");
-var $defineProperty$2 = require_objectDp();
+var $defineProperty$2 = _objectDp;
 var createDesc$2 = _propertyDesc;
 var _createProperty = /* @__PURE__ */ __name(function(object3, index2, value) {
   if (index2 in object3)
@@ -19056,9 +19030,9 @@ var _default$8 = /* @__PURE__ */ __name(function(instance, Constructor) {
   }
 }, "_default$8");
 var $export$3 = _export;
-$export$3($export$3.S + $export$3.F * !require_descriptors(), "Object", { defineProperty: require_objectDp().f });
+$export$3($export$3.S + $export$3.F * !_descriptors, "Object", { defineProperty: _objectDp.f });
 var $Object$2 = _coreExports.Object;
-var defineProperty$c = /* @__PURE__ */ __name(function defineProperty2(it, key, desc) {
+var defineProperty$c = /* @__PURE__ */ __name(function defineProperty3(it, key, desc) {
   return $Object$2.defineProperty(it, key, desc);
 }, "defineProperty");
 var defineProperty$b = { "default": defineProperty$c, __esModule: true };
@@ -19097,7 +19071,7 @@ var _meta = { exports: {} };
 var META$1 = _uid("meta");
 var isObject$c = _isObject;
 var has$a = _has;
-var setDesc = require_objectDp().f;
+var setDesc = _objectDp.f;
 var id$1 = 0;
 var isExtensible = Object.isExtensible || function() {
   return true;
@@ -19150,7 +19124,7 @@ var meta = _meta.exports = {
 var _metaExports = _meta.exports;
 var core = _coreExports;
 var wksExt$1 = _wksExt;
-var defineProperty$a = require_objectDp().f;
+var defineProperty$a = _objectDp.f;
 var _wksDefine = /* @__PURE__ */ __name(function(name2) {
   var $Symbol2 = core.Symbol || (core.Symbol = {});
   if (name2.charAt(0) != "_" && !(name2 in $Symbol2))
@@ -19204,9 +19178,9 @@ var createDesc$1 = _propertyDesc;
 var toIObject$1 = _toIobject;
 var toPrimitive$1 = _toPrimitive$1;
 var has$9 = _has;
-var IE8_DOM_DEFINE = require_ie8DomDefine();
+var IE8_DOM_DEFINE = _ie8DomDefine;
 var gOPD$5 = Object.getOwnPropertyDescriptor;
-_objectGopd.f = require_descriptors() ? gOPD$5 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor(O2, P2) {
+_objectGopd.f = _descriptors ? gOPD$5 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor(O2, P2) {
   O2 = toIObject$1(O2);
   P2 = toPrimitive$1(P2, true);
   if (IE8_DOM_DEFINE)
@@ -19219,7 +19193,7 @@ _objectGopd.f = require_descriptors() ? gOPD$5 : /* @__PURE__ */ __name(function
 }, "getOwnPropertyDescriptor");
 var global$2 = _globalExports;
 var has$8 = _has;
-var DESCRIPTORS = require_descriptors();
+var DESCRIPTORS = _descriptors;
 var $export$2 = _export;
 var redefine = _redefine;
 var META = _metaExports.KEY;
@@ -19242,7 +19216,7 @@ var _create$1 = _objectCreate;
 var gOPNExt = _objectGopnExt;
 var $GOPD = _objectGopd;
 var $GOPS = _objectGops;
-var $DP = require_objectDp();
+var $DP = _objectDp;
 var $keys$1 = _objectKeys;
 var gOPD$4 = $GOPD.f;
 var dP = $DP.f;
@@ -19285,7 +19259,7 @@ var isSymbol$8 = USE_NATIVE && typeof $Symbol.iterator == "symbol" ? function(it
 } : function(it) {
   return it instanceof $Symbol;
 };
-var $defineProperty$1 = /* @__PURE__ */ __name(function defineProperty3(it, key, D2) {
+var $defineProperty$1 = /* @__PURE__ */ __name(function defineProperty4(it, key, D2) {
   if (it === ObjectProto)
     $defineProperty$1(OPSymbols, key, D2);
   anObject(it);
@@ -84891,7 +84865,9 @@ function arrayRotate(arr, count2) {
 }
 __name(arrayRotate, "arrayRotate");
 function rotateSequenceDataToPosition(sequenceData2, caretPosition2, options) {
-  const newSequenceData = tidyUpSequenceData(sequenceData2, options);
+  const newSequenceData = tidyUpSequenceData(sequenceData2, __spreadValues({
+    doNotRemoveInvalidChars: true
+  }, options));
   newSequenceData.sequence = rotateBpsToPosition(
     newSequenceData.sequence,
     caretPosition2
@@ -84928,7 +84904,7 @@ function adjustAnnotationsToInsert(annotationsToBeAdjusted, insertStart, insertL
 __name(adjustAnnotationsToInsert, "adjustAnnotationsToInsert");
 function insertSequenceDataAtPositionOrRange(_sequenceDataToInsert, _existingSequenceData, caretPositionOrRange, options = {}) {
   const { maintainOriginSplit } = options;
-  let existingSequenceData = tidyUpSequenceData(_existingSequenceData, options);
+  let existingSequenceData = tidyUpSequenceData(_existingSequenceData, __spreadValues({ doNotRemoveInvalidChars: true }, options));
   const sequenceDataToInsert = tidyUpSequenceData(
     _sequenceDataToInsert,
     options
@@ -84946,6 +84922,7 @@ function insertSequenceDataAtPositionOrRange(_sequenceDataToInsert, _existingSeq
         return acc[type] = [];
       }, {})), {
         sequence: "",
+        doNotRemoveInvalidChars: true,
         proteinSequence: "",
         chromatogramData: void 0
       }),
@@ -92976,7 +92953,7 @@ function getSequenceDataBetweenRange(seqData, range2, options = {}) {
   if (!range2)
     return seqData;
   const { exclude = {}, excludePartial = {} } = options;
-  const seqDataToUse = tidyUpSequenceData(seqData, options);
+  const seqDataToUse = tidyUpSequenceData(seqData, __spreadValues({ doNotRemoveInvalidChars: true }, options));
   annotationTypes.forEach((type) => {
     delete seqDataToUse[`filtered${lodashExports.startCase(type)}`];
   });
@@ -93027,9 +93004,9 @@ function getSequenceDataBetweenRange(seqData, range2, options = {}) {
         }
       });
     });
-    return tidyUpSequenceData(toRet, options);
+    return tidyUpSequenceData(toRet, __spreadValues({ doNotRemoveInvalidChars: true }, options));
   }
-  return tidyUpSequenceData(seqDataToReturn, options);
+  return tidyUpSequenceData(seqDataToReturn, __spreadValues({ doNotRemoveInvalidChars: true }, options));
 }
 __name(getSequenceDataBetweenRange, "getSequenceDataBetweenRange");
 function getAnnotationsBetweenRange(annotationsToBeAdjusted, range2, maxLength, shouldExcludePartial) {
@@ -93076,7 +93053,7 @@ function getComplementSequenceAndAnnotations(pSeqObj, options = {}) {
   const newSeqObj = Object.assign({}, seqObj, {
     sequence: getComplementSequenceString(seqObj.sequence, seqObj.isRna)
   });
-  return tidyUpSequenceData(newSeqObj, options);
+  return tidyUpSequenceData(newSeqObj, __spreadValues({ doNotRemoveInvalidChars: true }, options));
 }
 __name(getComplementSequenceAndAnnotations, "getComplementSequenceAndAnnotations");
 function getCutsiteType(restrictionEnzyme) {
@@ -93124,7 +93101,7 @@ __name(getReverseComplementAnnotation, "getReverseComplementAnnotation");
 function getReverseComplementSequenceAndAnnoations(pSeqObj, options = {}) {
   const seqObj = tidyUpSequenceData(
     getSequenceDataBetweenRange(pSeqObj, options.range),
-    options
+    __spreadValues({ doNotRemoveInvalidChars: true }, options)
   );
   const newSeqObj = Object.assign(
     {},
@@ -93144,7 +93121,9 @@ function getReverseComplementSequenceAndAnnoations(pSeqObj, options = {}) {
       return acc;
     }, {})
   );
-  return tidyUpSequenceData(newSeqObj, options);
+  return tidyUpSequenceData(newSeqObj, __spreadValues({
+    doNotRemoveInvalidChars: true
+  }, options));
 }
 __name(getReverseComplementSequenceAndAnnoations, "getReverseComplementSequenceAndAnnoations");
 function guessIfSequenceIsDnaAndNotProtein(seq, options = {}) {
@@ -94090,6 +94069,30 @@ function flattenSequenceArray(parsingResultArray, opts2) {
   return parsingResultArray;
 }
 __name(flattenSequenceArray, "flattenSequenceArray");
+function parseFeatureLocation(locStr, isProtein2, inclusive1BasedStart, inclusive1BasedEnd) {
+  locStr = locStr.trim();
+  const locArr = [];
+  locStr.replace(/(\d+)/g, function(string2, match2) {
+    locArr.push(match2);
+  });
+  const locArray = [];
+  for (let i = 0; i < locArr.length; i += 2) {
+    const start2 = parseInt(locArr[i], 10) - (inclusive1BasedStart ? 0 : 1);
+    let end2 = parseInt(locArr[i + 1], 10) - (inclusive1BasedEnd ? 0 : 1);
+    if (isNaN(end2)) {
+      end2 = start2;
+    }
+    const location2 = {
+      start: start2,
+      end: end2
+    };
+    locArray.push(
+      isProtein2 ? convertAACaretPositionOrRangeToDna(location2) : location2
+    );
+  }
+  return locArray;
+}
+__name(parseFeatureLocation, "parseFeatureLocation");
 function genbankToJson(string2, options = {}) {
   const {
     inclusive1BasedStart,
@@ -94414,7 +94417,15 @@ function genbankToJson(string2, options = {}) {
     }
     if (isFeatureLineRunon(line, featureLocationIndentation)) {
       if (lastLineWasLocation) {
-        parseFeatureLocation(line.trim(), options);
+        const feat = getCurrentFeature();
+        feat.locations = feat.locations.concat(
+          parseFeatureLocation(
+            line.trim(),
+            options.isProtein,
+            inclusive1BasedStart,
+            inclusive1BasedEnd
+          )
+        );
         lastLineWasLocation = true;
       } else {
         if (currentFeatureNote) {
@@ -94440,7 +94451,14 @@ function genbankToJson(string2, options = {}) {
         const feat = getCurrentFeature();
         feat.type = key;
         feat.strand = strand;
-        parseFeatureLocation(val2, options);
+        feat.locations = feat.locations.concat(
+          parseFeatureLocation(
+            val2,
+            options.isProtein,
+            inclusive1BasedStart,
+            inclusive1BasedEnd
+          )
+        );
         lastLineWasLocation = true;
       }
     }
@@ -94463,29 +94481,6 @@ function genbankToJson(string2, options = {}) {
     return qual;
   }
   __name(isNote, "isNote");
-  function parseFeatureLocation(locStr, options2) {
-    locStr = locStr.trim();
-    const locArr = [];
-    locStr.replace(/(\d+)/g, function(string22, match2) {
-      locArr.push(match2);
-    });
-    for (let i = 0; i < locArr.length; i += 2) {
-      const start2 = parseInt(locArr[i], 10) - (inclusive1BasedStart ? 0 : 1);
-      let end2 = parseInt(locArr[i + 1], 10) - (inclusive1BasedEnd ? 0 : 1);
-      if (isNaN(end2)) {
-        end2 = start2;
-      }
-      const location2 = {
-        start: start2,
-        end: end2
-      };
-      const feat = getCurrentFeature();
-      feat.locations.push(
-        options2.isProtein ? convertAACaretPositionOrRangeToDna(location2) : location2
-      );
-    }
-  }
-  __name(parseFeatureLocation, "parseFeatureLocation");
   function parseFeatureNote(line) {
     let newLine;
     newLine = line.trimLeft();
@@ -106739,7 +106734,9 @@ function addHighlightedDifferences(alignmentTracks) {
     if (track2.isUnmapped) {
       return track2;
     }
-    const sequenceData2 = tidyUpSequenceData(track2.sequenceData);
+    const sequenceData2 = tidyUpSequenceData(track2.sequenceData, {
+      doNotRemoveInvalidChars: true
+    });
     const matchHighlightRanges = getRangeMatchesBetweenTemplateAndNonTemplate(
       alignmentTracks[0].alignmentData.sequence,
       track2.alignmentData.sequence
@@ -106799,7 +106796,9 @@ const alignments = /* @__PURE__ */ __name((state2 = {}, { payload = {}, type })
       const templateSeq = payloadToUse.pairwiseAlignments[0][0];
       const pairwiseOverviewAlignmentTracks = [
         __spreadProps(__spreadValues({}, templateSeq), {
-          sequenceData: tidyUpSequenceData(templateSeq.sequenceData),
+          sequenceData: tidyUpSequenceData(templateSeq.sequenceData, {
+            doNotRemoveInvalidChars: true
+          }),
           alignmentData: { sequence: templateSeq.sequenceData.sequence }
           //remove the gaps from the template sequence
         })
@@ -106828,7 +106827,9 @@ const alignments = /* @__PURE__ */ __name((state2 = {}, { payload = {}, type })
           }));
         }
         const alignedSeqMinusInserts = __spreadProps(__spreadValues({}, alignedSeq), {
-          sequenceData: __spreadProps(__spreadValues({}, tidyUpSequenceData(alignedSeq.sequenceData)), {
+          sequenceData: __spreadProps(__spreadValues({}, tidyUpSequenceData(alignedSeq.sequenceData, {
+            doNotRemoveInvalidChars: true
+          })), {
             sequence: template.sequenceData.sequence
           }),
           additionalSelectionLayers,
@@ -110780,7 +110781,7 @@ const handleSave = /* @__PURE__ */ __name((props) => (..._0) => __async(exports,
   }
   const promiseOrVal = (!readOnly2 || alwaysAllowSave || opts2.isSaveAs) && saveHandler && saveHandler(
     opts2,
-    tidyUpSequenceData(sequenceData2, { annotationsAsObjects: true }),
+    tidyUpSequenceData(sequenceData2, { doNotRemoveInvalidChars: true, annotationsAsObjects: true }),
     props,
     updateLastSavedIdToCurrent
   );
@@ -111380,7 +111381,7 @@ function jsonToJson(incomingJson) {
   return JSON.stringify(
     lodashExports.omit(
       cleanUpTeselagenJsonForExport(
-        tidyUpSequenceData(incomingJson, { annotationsAsObjects: false })
+        tidyUpSequenceData(incomingJson, { doNotRemoveInvalidChars: true, annotationsAsObjects: false })
       ),
       [
         "sequenceFragments",
@@ -125863,7 +125864,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.3.49";
+const version = "0.3.50";
 const main = "./src/index.js";
 const exports$1 = {
   ".": {
@@ -128190,7 +128191,7 @@ var createClass = function() {
     return Constructor;
   };
 }();
-var defineProperty4 = /* @__PURE__ */ __name(function(obj, key, value) {
+var defineProperty5 = /* @__PURE__ */ __name(function(obj, key, value) {
   if (key in obj) {
     Object.defineProperty(obj, key, {
       value,
@@ -128801,7 +128802,7 @@ function arrow(data, options) {
   var sideValue = center - data.offsets.popper[side] - popperMarginSide - popperBorderSide;
   sideValue = Math.max(Math.min(popper2[len] - arrowElementSize, sideValue), 0);
   data.arrowElement = arrowElement;
-  data.offsets.arrow = (_data$offsets$arrow = {}, defineProperty4(_data$offsets$arrow, side, Math.round(sideValue)), defineProperty4(_data$offsets$arrow, altSide, ""), _data$offsets$arrow);
+  data.offsets.arrow = (_data$offsets$arrow = {}, defineProperty5(_data$offsets$arrow, side, Math.round(sideValue)), defineProperty5(_data$offsets$arrow, altSide, ""), _data$offsets$arrow);
   return data;
 }
 __name(arrow, "arrow");
@@ -129032,7 +129033,7 @@ function preventOverflow(data, options) {
       if (popper2[placement] < boundaries[placement] && !options.escapeWithReference) {
         value = Math.max(popper2[placement], boundaries[placement]);
       }
-      return defineProperty4({}, placement, value);
+      return defineProperty5({}, placement, value);
     }, "primary"),
     secondary: /* @__PURE__ */ __name(function secondary(placement) {
       var mainSide = placement === "right" ? "left" : "top";
@@ -129040,7 +129041,7 @@ function preventOverflow(data, options) {
       if (popper2[placement] > boundaries[placement] && !options.escapeWithReference) {
         value = Math.min(popper2[mainSide], boundaries[placement] - (placement === "right" ? popper2.width : popper2.height));
       }
-      return defineProperty4({}, mainSide, value);
+      return defineProperty5({}, mainSide, value);
     }, "secondary")
   };
   order2.forEach(function(placement) {
@@ -129061,8 +129062,8 @@ function shift3(data) {
     var side = isVertical ? "left" : "top";
     var measurement = isVertical ? "width" : "height";
     var shiftOffsets = {
-      start: defineProperty4({}, side, reference2[side]),
-      end: defineProperty4({}, side, reference2[side] + reference2[measurement] - popper2[measurement])
+      start: defineProperty5({}, side, reference2[side]),
+      end: defineProperty5({}, side, reference2[side] + reference2[measurement] - popper2[measurement])
     };
     data.offsets.popper = _extends$1({}, popper2, shiftOffsets[shiftvariation]);
   }
@@ -130599,7 +130600,7 @@ function VectorInteractionHOC(Component) {
               }
             }
           ),
-          { annotationsAsObjects: true }
+          { doNotRemoveInvalidChars: true, annotationsAsObjects: true }
         );
         if (!(this.sequenceDataToCopy || {}).textToCopy && !seqData.sequence.length)
           return window.toastr.warning(
@@ -130615,7 +130616,7 @@ function VectorInteractionHOC(Component) {
           this.handleDnaDelete(false);
           onCut(
             e2,
-            tidyUpSequenceData(seqData, { annotationsAsObjects: true }),
+            tidyUpSequenceData(seqData, { doNotRemoveInvalidChars: true, annotationsAsObjects: true }),
             this.props
           );
           document.body.removeEventListener("cut", this.handleCut);