@teselagen/ove 0.3.27 → 0.3.29

package/index.es.js

@@ -18218,11 +18218,20 @@ var _fails = /* @__PURE__ */ __name(function(exec) {
     return true;
   }
 }, "_fails");
-var _descriptors = !_fails(function() {
-  return Object.defineProperty({}, "a", { get: function() {
-    return 7;
-  } }).a != 7;
-});
+var _descriptors;
+var hasRequired_descriptors;
+function require_descriptors() {
+  if (hasRequired_descriptors)
+    return _descriptors;
+  hasRequired_descriptors = 1;
+  _descriptors = !_fails(function() {
+    return Object.defineProperty({}, "a", { get: function() {
+      return 7;
+    } }).a != 7;
+  });
+  return _descriptors;
+}
+__name(require_descriptors, "require_descriptors");
 var _domCreate;
 var hasRequired_domCreate;
 function require_domCreate() {
@@ -18238,7 +18247,7 @@ function require_domCreate() {
   return _domCreate;
 }
 __name(require_domCreate, "require_domCreate");
-var _ie8DomDefine = !_descriptors && !_fails(function() {
+var _ie8DomDefine = !require_descriptors() && !_fails(function() {
   return Object.defineProperty(require_domCreate()("div"), "a", { get: function() {
     return 7;
   } }).a != 7;
@@ -18260,7 +18269,7 @@ var anObject$3 = _anObject;
 var IE8_DOM_DEFINE$1 = _ie8DomDefine;
 var toPrimitive$2 = _toPrimitive$1;
 var dP$2 = Object.defineProperty;
-_objectDp.f = _descriptors ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty2(O2, P2, Attributes) {
+_objectDp.f = require_descriptors() ? Object.defineProperty : /* @__PURE__ */ __name(function defineProperty2(O2, P2, Attributes) {
   anObject$3(O2);
   P2 = toPrimitive$2(P2, true);
   anObject$3(Attributes);
@@ -18285,7 +18294,7 @@ var _propertyDesc = /* @__PURE__ */ __name(function(bitmap, value) {
 }, "_propertyDesc");
 var dP$1 = _objectDp;
 var createDesc$3 = _propertyDesc;
-var _hide = _descriptors ? function(object3, key, value) {
+var _hide = require_descriptors() ? function(object3, key, value) {
   return dP$1.f(object3, key, createDesc$3(1, value));
 } : function(object3, key, value) {
   object3[key] = value;
@@ -18482,7 +18491,7 @@ function require_objectAssign() {
   if (hasRequired_objectAssign)
     return _objectAssign;
   hasRequired_objectAssign = 1;
-  var DESCRIPTORS2 = _descriptors;
+  var DESCRIPTORS2 = require_descriptors();
   var getKeys2 = _objectKeys;
   var gOPS2 = _objectGops;
   var pIE2 = require_objectPie();
@@ -18557,7 +18566,7 @@ function require_objectDps() {
   var dP2 = _objectDp;
   var anObject2 = _anObject;
   var getKeys2 = _objectKeys;
-  _objectDps = _descriptors ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties3(O2, Properties2) {
+  _objectDps = require_descriptors() ? Object.defineProperties : /* @__PURE__ */ __name(function defineProperties3(O2, Properties2) {
     anObject2(O2);
     var keys5 = getKeys2(Properties2);
     var length = keys5.length;
@@ -19038,7 +19047,7 @@ var _default$8 = /* @__PURE__ */ __name(function(instance, Constructor) {
   }
 }, "_default$8");
 var $export$3 = _export;
-$export$3($export$3.S + $export$3.F * !_descriptors, "Object", { defineProperty: _objectDp.f });
+$export$3($export$3.S + $export$3.F * !require_descriptors(), "Object", { defineProperty: _objectDp.f });
 var $Object$2 = _coreExports.Object;
 var defineProperty$c = /* @__PURE__ */ __name(function defineProperty3(it, key, desc) {
   return $Object$2.defineProperty(it, key, desc);
@@ -19188,7 +19197,7 @@ var toPrimitive$1 = _toPrimitive$1;
 var has$9 = _has;
 var IE8_DOM_DEFINE = _ie8DomDefine;
 var gOPD$5 = Object.getOwnPropertyDescriptor;
-_objectGopd.f = _descriptors ? gOPD$5 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor(O2, P2) {
+_objectGopd.f = require_descriptors() ? gOPD$5 : /* @__PURE__ */ __name(function getOwnPropertyDescriptor(O2, P2) {
   O2 = toIObject$1(O2);
   P2 = toPrimitive$1(P2, true);
   if (IE8_DOM_DEFINE)
@@ -19201,7 +19210,7 @@ _objectGopd.f = _descriptors ? gOPD$5 : /* @__PURE__ */ __name(function getOwnPr
 }, "getOwnPropertyDescriptor");
 var global$2 = _globalExports;
 var has$8 = _has;
-var DESCRIPTORS = _descriptors;
+var DESCRIPTORS = require_descriptors();
 var $export$2 = _export;
 var redefine = _redefine;
 var META = _metaExports.KEY;
@@ -77826,30 +77835,6 @@ const minimumOrfSize$1 = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.de
 }, Symbol.toStringTag, { value: "Module" }));
 const protein_letters = "ACDEFGHIKLMNPQRSTVWY";
 const extended_protein_letters = "ACDEFGHIKLMNPQRSTVWYBXZJUO.*-";
-const protein_letters_1to3 = {
-  A: "Ala",
-  C: "Cys",
-  D: "Asp",
-  E: "Glu",
-  F: "Phe",
-  G: "Gly",
-  H: "His",
-  I: "Ile",
-  K: "Lys",
-  L: "Leu",
-  M: "Met",
-  N: "Asn",
-  P: "Pro",
-  Q: "Gln",
-  R: "Arg",
-  S: "Ser",
-  T: "Thr",
-  V: "Val",
-  W: "Trp",
-  Y: "Tyr",
-  O: "Pyl",
-  U: "Sec"
-};
 const ambiguous_dna_letters = "GATCRYWSMKHBVDN";
 const unambiguous_dna_letters = "GATC";
 const ambiguous_rna_letters = "GAUCRYWSMKHBVDN";
@@ -77874,135 +77859,6 @@ const ambiguous_dna_values$1 = {
   X: "GATC",
   N: "GATC"
 };
-const ambiguous_rna_values = {
-  ".": ".",
-  A: "A",
-  C: "C",
-  G: "G",
-  U: "U",
-  M: "AC",
-  R: "AG",
-  W: "AU",
-  S: "CG",
-  Y: "CU",
-  K: "GU",
-  V: "ACG",
-  H: "ACU",
-  D: "AGU",
-  B: "CGU",
-  X: "GAUC",
-  N: "GAUC"
-};
-const ambiguous_dna_complement = {
-  ".": ".",
-  A: "T",
-  C: "G",
-  G: "C",
-  T: "A",
-  M: "K",
-  R: "Y",
-  W: "W",
-  S: "S",
-  Y: "R",
-  K: "M",
-  V: "B",
-  H: "D",
-  D: "H",
-  B: "V",
-  X: "X",
-  N: "N"
-};
-const ambiguous_rna_complement = {
-  ".": ".",
-  A: "U",
-  C: "G",
-  G: "C",
-  U: "A",
-  M: "K",
-  R: "Y",
-  W: "W",
-  S: "S",
-  Y: "R",
-  K: "M",
-  V: "B",
-  H: "D",
-  D: "H",
-  B: "V",
-  X: "X",
-  N: "N"
-};
-const unambiguous_dna_weights = {
-  A: 331.2218,
-  C: 307.1971,
-  G: 347.2212,
-  T: 322.2085
-};
-const monoisotopic_unambiguous_dna_weights = {
-  A: 331.06817,
-  C: 307.056936,
-  G: 347.063084,
-  T: 322.056602
-};
-const unambiguous_rna_weights = {
-  A: 347.2212,
-  C: 323.1965,
-  G: 363.2206,
-  U: 324.1813
-};
-const monoisotopic_unambiguous_rna_weights = {
-  A: 347.063084,
-  C: 323.051851,
-  G: 363.057999,
-  U: 324.035867
-};
-const protein_weights = {
-  A: 89.0932,
-  C: 121.1582,
-  D: 133.1027,
-  E: 147.1293,
-  F: 165.1891,
-  G: 75.0666,
-  H: 155.1546,
-  I: 131.1729,
-  K: 146.1876,
-  L: 131.1729,
-  M: 149.2113,
-  N: 132.1179,
-  O: 255.3134,
-  P: 115.1305,
-  Q: 146.1445,
-  R: 174.201,
-  S: 105.0926,
-  T: 119.1192,
-  U: 168.0532,
-  V: 117.1463,
-  W: 204.2252,
-  Y: 181.1885
-};
-const monoisotopic_protein_weights = {
-  A: 89.047678,
-  C: 121.019749,
-  D: 133.037508,
-  E: 147.053158,
-  F: 165.078979,
-  G: 75.032028,
-  H: 155.069477,
-  I: 131.094629,
-  K: 146.105528,
-  L: 131.094629,
-  M: 149.051049,
-  N: 132.053492,
-  O: 255.158292,
-  P: 115.063329,
-  Q: 146.069142,
-  R: 174.111676,
-  S: 105.042593,
-  T: 119.058243,
-  U: 168.964203,
-  V: 117.078979,
-  W: 204.089878,
-  Y: 181.073893
-};
 const extended_protein_values = {
   A: "A",
   B: "ND",
@@ -78037,140 +77893,17 @@ const extended_protein_values = {
   ".": "\\.\\.",
   "-": "\\-"
 };
-const atom_weights = {
-  H: 1.00794,
-  D: 2.0141,
-  He: 4.002602,
-  Li: 6.941,
-  Be: 9.012182,
-  B: 10.811,
-  C: 12.0107,
-  N: 14.0067,
-  O: 15.9994,
-  F: 18.9984032,
-  Ne: 20.1797,
-  Na: 22.98977,
-  Mg: 24.305,
-  Al: 26.981538,
-  Si: 28.0855,
-  P: 30.973761,
-  S: 32.065,
-  Cl: 35.453,
-  Ar: 39.948,
-  K: 39.0983,
-  Ca: 40.078,
-  Sc: 44.95591,
-  Ti: 47.867,
-  V: 50.9415,
-  Cr: 51.9961,
-  Mn: 54.938049,
-  Fe: 55.845,
-  Co: 58.9332,
-  Ni: 58.6934,
-  Cu: 63.546,
-  Zn: 65.39,
-  Ga: 69.723,
-  Ge: 72.64,
-  As: 74.9216,
-  Se: 78.96,
-  Br: 79.904,
-  Kr: 83.8,
-  Rb: 85.4678,
-  Sr: 87.62,
-  Y: 88.90585,
-  Zr: 91.224,
-  Nb: 92.90638,
-  Mo: 95.94,
-  Tc: 98,
-  Ru: 101.07,
-  Rh: 102.9055,
-  Pd: 106.42,
-  Ag: 107.8682,
-  Cd: 112.411,
-  In: 114.818,
-  Sn: 118.71,
-  Sb: 121.76,
-  Te: 127.6,
-  I: 126.90447,
-  Xe: 131.293,
-  Cs: 132.90545,
-  Ba: 137.327,
-  La: 138.9055,
-  Ce: 140.116,
-  Pr: 140.90765,
-  Nd: 144.24,
-  Pm: 145,
-  Sm: 150.36,
-  Eu: 151.964,
-  Gd: 157.25,
-  Tb: 158.92534,
-  Dy: 162.5,
-  Ho: 164.93032,
-  Er: 167.259,
-  Tm: 168.93421,
-  Yb: 173.04,
-  Lu: 174.967,
-  Hf: 178.49,
-  Ta: 180.9479,
-  W: 183.84,
-  Re: 186.207,
-  Os: 190.23,
-  Ir: 192.217,
-  Pt: 195.078,
-  Au: 196.96655,
-  Hg: 200.59,
-  Tl: 204.3833,
-  Pb: 207.2,
-  Bi: 208.98038,
-  Po: 208.98,
-  At: 209.99,
-  Rn: 222.02,
-  Fr: 223.02,
-  Ra: 226.03,
-  Ac: 227.03,
-  Th: 232.0381,
-  Pa: 231.03588,
-  U: 238.02891,
-  Np: 237.05,
-  Pu: 244.06,
-  Am: 243.06,
-  Cm: 247.07,
-  Bk: 247.07,
-  Cf: 251.08,
-  Es: 252.08,
-  Fm: 257.1,
-  Md: 258.1,
-  No: 259.1,
-  Lr: 262.11,
-  Rf: 261.11,
-  Db: 262.11,
-  Sg: 266.12,
-  Bh: 264.12,
-  Hs: 269.13,
-  Mt: 268.14
-};
 const bioData = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.defineProperty({
   __proto__: null,
-  ambiguous_dna_complement,
   ambiguous_dna_letters,
   ambiguous_dna_values: ambiguous_dna_values$1,
-  ambiguous_rna_complement,
   ambiguous_rna_letters,
-  ambiguous_rna_values,
-  atom_weights,
   extended_dna_letters,
   extended_protein_letters,
   extended_protein_values,
-  monoisotopic_protein_weights,
-  monoisotopic_unambiguous_dna_weights,
-  monoisotopic_unambiguous_rna_weights,
   protein_letters,
-  protein_letters_1to3,
-  protein_weights,
   unambiguous_dna_letters,
-  unambiguous_dna_weights,
-  unambiguous_rna_letters,
-  unambiguous_rna_weights
+  unambiguous_rna_letters
 }, Symbol.toStringTag, { value: "Module" }));
 const aminoAcidToDegenerateDnaMap = {
   "-": "---",
@@ -83679,7 +83412,7 @@ const proteinAlphabet = {
     hydrophobicity: 1.8,
     colorByFamily: "#00FFFF",
     color: "hsl(327.3, 100%, 69%)",
-    mass: 89.1
+    mass: 71.0779
   },
   R: {
     value: "R",
@@ -83688,7 +83421,7 @@ const proteinAlphabet = {
     hydrophobicity: -4.5,
     colorByFamily: "#FFC0CB",
     color: "hsl(258.1, 100%, 69%)",
-    mass: 174.2
+    mass: 156.18568
   },
   N: {
     value: "N",
@@ -83697,7 +83430,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.5,
     colorByFamily: "#D3D3D3",
     color: "hsl(268.9, 100%, 69%)",
-    mass: 132.1
+    mass: 114.10264
   },
   D: {
     value: "D",
@@ -83706,7 +83439,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.5,
     colorByFamily: "#EE82EE",
     color: "hsl(268.9, 100%, 69%)",
-    mass: 133.1
+    mass: 115.0874
   },
   C: {
     value: "C",
@@ -83715,7 +83448,7 @@ const proteinAlphabet = {
     hydrophobicity: 2.5,
     colorByFamily: "#FFFF00",
     color: "hsl(335.1, 100%, 69%)",
-    mass: 121.2
+    mass: 103.1429
   },
   E: {
     value: "E",
@@ -83724,7 +83457,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.5,
     colorByFamily: "#EE82EE",
     color: "hsl(268.9, 100%, 69%)",
-    mass: 147.1
+    mass: 129.11398
   },
   Q: {
     value: "Q",
@@ -83733,7 +83466,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.5,
     colorByFamily: "#D3D3D3",
     color: "hsl(268.9, 100%, 69%)",
-    mass: 146.2
+    mass: 128.12922
   },
   G: {
     value: "G",
@@ -83742,7 +83475,7 @@ const proteinAlphabet = {
     hydrophobicity: -0.4,
     colorByFamily: "#00FFFF",
     color: "hsl(303.1, 100%, 69%)",
-    mass: 75.1
+    mass: 57.05132
   },
   H: {
     value: "H",
@@ -83751,7 +83484,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.2,
     colorByFamily: "#FFC0CB",
     color: "hsl(272.2, 100%, 69%)",
-    mass: 155.2
+    mass: 137.13928
   },
   I: {
     value: "I",
@@ -83760,7 +83493,7 @@ const proteinAlphabet = {
     hydrophobicity: 4.5,
     colorByFamily: "#00FFFF",
     color: "hsl(356.9, 100%, 69%)",
-    mass: 131.2
+    mass: 113.15764
   },
   L: {
     value: "L",
@@ -83769,7 +83502,7 @@ const proteinAlphabet = {
     hydrophobicity: 3.8,
     colorByFamily: "#00FFFF",
     color: "hsl(349.4, 100%, 69%)",
-    mass: 131.2
+    mass: 113.15764
   },
   K: {
     value: "K",
@@ -83778,7 +83511,7 @@ const proteinAlphabet = {
     hydrophobicity: -3.9,
     colorByFamily: "#FFC0CB",
     color: "hsl(264.7, 100%, 69%)",
-    mass: 146.2
+    mass: 128.17228
   },
   M: {
     value: "M",
@@ -83787,7 +83520,7 @@ const proteinAlphabet = {
     hydrophobicity: 1.9,
     colorByFamily: "#FFFF00",
     color: "hsl(328.5, 100%, 69%)",
-    mass: 149.2
+    mass: 131.19606
   },
   F: {
     value: "F",
@@ -83796,7 +83529,7 @@ const proteinAlphabet = {
     hydrophobicity: 2.8,
     colorByFamily: "#FFA500",
     color: "hsl(338.4, 100%, 69%)",
-    mass: 165.2
+    mass: 147.17386
   },
   P: {
     value: "P",
@@ -83805,7 +83538,7 @@ const proteinAlphabet = {
     hydrophobicity: -1.6,
     colorByFamily: "#00FFFF",
     color: "hsl(289.9, 100%, 69%)",
-    mass: 115.1
+    mass: 97.11518
   },
   S: {
     value: "S",
@@ -83814,7 +83547,7 @@ const proteinAlphabet = {
     hydrophobicity: -0.8,
     colorByFamily: "#90EE90",
     color: "hsl(298.6, 100%, 69%)",
-    mass: 105.1
+    mass: 87.0773
   },
   T: {
     value: "T",
@@ -83823,7 +83556,7 @@ const proteinAlphabet = {
     hydrophobicity: -0.7,
     colorByFamily: "#90EE90",
     color: "hsl(299.8, 100%, 69%)",
-    mass: 119.1
+    mass: 101.10388
   },
   U: {
     value: "U",
@@ -83831,7 +83564,7 @@ const proteinAlphabet = {
     threeLettersName: "Sec",
     colorByFamily: "#FF0000",
     color: "hsl(0, 100%, 69%)",
-    mass: 168.1
+    mass: 150.3079
   },
   W: {
     value: "W",
@@ -83840,7 +83573,7 @@ const proteinAlphabet = {
     hydrophobicity: -0.9,
     colorByFamily: "#FFA500",
     color: "hsl(297.6, 100%, 69%)",
-    mass: 204.2
+    mass: 186.2099
   },
   Y: {
     value: "Y",
@@ -83849,7 +83582,7 @@ const proteinAlphabet = {
     hydrophobicity: -1.3,
     colorByFamily: "#FFA500",
     color: "hsl(293.2, 100%, 69%)",
-    mass: 181.2
+    mass: 163.17326
   },
   V: {
     value: "V",
@@ -83858,7 +83591,7 @@ const proteinAlphabet = {
     hydrophobicity: 4.2,
     colorByFamily: "#00FFFF",
     color: "hsl(353.6, 100%, 69%)",
-    mass: 117.1
+    mass: 99.13106
   },
   "*": {
     value: "*",
@@ -93527,6 +93260,9 @@ function getMassOfAaString(aaString, numsAfterDecimal = 2, divideByThree = false
   if (divideByThree) {
     sumMass /= 3;
   }
+  if (aaString.length > 0) {
+    sumMass = sumMass + 18.0153;
+  }
   return Math.round(sumMass * __pow(10, numsAfterDecimal)) / __pow(10, numsAfterDecimal);
 }
 __name(getMassOfAaString, "getMassOfAaString");
@@ -125925,7 +125661,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 __name(showFileDialog, "showFileDialog");
 const name = "@teselagen/ove";
-const version = "0.3.26";
+const version = "0.3.28";
 const main = "./src/index.js";
 const exports$1 = {
   ".": {