@teselagen/ove 0.3.21 → 0.3.23
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.cjs.js +72 -48
- package/index.es.js +72 -48
- package/index.umd.js +38 -22
- package/package.json +1 -1
- package/src/AlignmentView/index.js +5 -2
- package/src/AlignmentView/style.css +4 -0
- package/src/Editor/index.js +1 -1
- package/src/RowItem/Sequence.js +2 -2
- package/src/RowItem/StackedAnnotations/primerBases.js +1 -1
- package/src/ToolBar/index.js +1 -1
- package/style.css +4 -0
package/index.cjs.js
CHANGED
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@@ -7425,7 +7425,7 @@ function getPlainObjectKeys(object) {
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var ownKeys$8 = typeof Reflect !== "undefined" && Reflect.ownKeys ? Reflect.ownKeys : hasGetOwnPropertySymbols ? function (obj) {
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return Object.getOwnPropertyNames(obj).concat(Object.getOwnPropertySymbols(obj));
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} : /* istanbul ignore next */Object.getOwnPropertyNames;
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-
function toPrimitive$
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function toPrimitive$2(value) {
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return value === null ? null : typeof value === "object" ? "" + value : value;
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}
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function hasProp(target, prop) {
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@@ -8354,7 +8354,7 @@ var ObservableValue = /*#__PURE__*/function (_Atom) {
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return this.name_ + "[" + this.value_ + "]";
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};
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_proto.valueOf = function valueOf() {
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-
return toPrimitive$
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return toPrimitive$2(this.get());
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};
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_proto[_Symbol$toPrimitive] = function () {
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return this.valueOf();
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@@ -8582,7 +8582,7 @@ var ComputedValue = /*#__PURE__*/function () {
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return this.name_ + "[" + this.derivation.toString() + "]";
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};
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_proto.valueOf = function valueOf() {
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return toPrimitive$
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return toPrimitive$2(this.get());
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};
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_proto[_Symbol$toPrimitive$1] = function () {
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return this.valueOf();
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@@ -30282,10 +30282,18 @@ var _fails = function (exec) {
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}
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};
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-
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var
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-
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-
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var _descriptors;
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var hasRequired_descriptors;
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function require_descriptors () {
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if (hasRequired_descriptors) return _descriptors;
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hasRequired_descriptors = 1;
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// Thank's IE8 for his funny defineProperty
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_descriptors = !_fails(function () {
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return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
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});
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return _descriptors;
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}
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var _domCreate;
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var hasRequired_domCreate;
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@@ -30303,9 +30311,17 @@ function require_domCreate () {
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return _domCreate;
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}
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-
var _ie8DomDefine
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-
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-
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var _ie8DomDefine;
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var hasRequired_ie8DomDefine;
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function require_ie8DomDefine () {
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if (hasRequired_ie8DomDefine) return _ie8DomDefine;
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hasRequired_ie8DomDefine = 1;
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_ie8DomDefine = !require_descriptors() && !_fails(function () {
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return Object.defineProperty(require_domCreate()('div'), 'a', { get: function () { return 7; } }).a != 7;
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});
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return _ie8DomDefine;
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}
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// 7.1.1 ToPrimitive(input [, PreferredType])
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var isObject$d = _isObject;
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@@ -30320,22 +30336,29 @@ var _toPrimitive$1 = function (it, S) {
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throw TypeError("Can't convert object to primitive value");
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};
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var
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var IE8_DOM_DEFINE$1 = _ie8DomDefine;
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var toPrimitive$2 = _toPrimitive$1;
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var dP$3 = Object.defineProperty;
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var hasRequired_objectDp;
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function require_objectDp () {
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if (hasRequired_objectDp) return _objectDp;
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hasRequired_objectDp = 1;
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var anObject = _anObject;
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var IE8_DOM_DEFINE = require_ie8DomDefine();
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var toPrimitive = _toPrimitive$1;
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var dP = Object.defineProperty;
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_objectDp.f = require_descriptors() ? Object.defineProperty : function defineProperty(O, P, Attributes) {
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anObject(O);
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P = toPrimitive(P, true);
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anObject(Attributes);
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if (IE8_DOM_DEFINE) try {
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return dP(O, P, Attributes);
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} catch (e) { /* empty */ }
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if ('get' in Attributes || 'set' in Attributes) throw TypeError('Accessors not supported!');
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if ('value' in Attributes) O[P] = Attributes.value;
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return O;
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};
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return _objectDp;
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}
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var _propertyDesc = function (bitmap, value) {
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return {
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};
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};
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var dP$2 =
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var dP$2 = require_objectDp();
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var createDesc$3 = _propertyDesc;
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var _hide =
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var _hide = require_descriptors() ? function (object, key, value) {
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return dP$2.f(object, key, createDesc$3(1, value));
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} : function (object, key, value) {
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object[key] = value;
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if (hasRequired_objectAssign) return _objectAssign;
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hasRequired_objectAssign = 1;
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// 19.1.2.1 Object.assign(target, source, ...)
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var DESCRIPTORS =
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var DESCRIPTORS = require_descriptors();
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var getKeys = _objectKeys;
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var gOPS = _objectGops;
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var pIE = _objectPie;
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@@ -30654,11 +30677,11 @@ var _iterators = {};
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var _redefine = _hide;
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var dP$1 =
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var dP$1 = require_objectDp();
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var anObject$4 = _anObject;
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var getKeys$1 = _objectKeys;
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var _objectDps =
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var _objectDps = require_descriptors() ? Object.defineProperties : function defineProperties(O, Properties) {
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anObject$4(O);
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var keys = getKeys$1(Properties);
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var length = keys.length;
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@@ -30737,7 +30760,7 @@ $exports.store = store$2;
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var _wksExports = _wks.exports;
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var def =
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var def = require_objectDp().f;
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var has$c = _has;
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var TAG$1 = _wksExports('toStringTag');
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@@ -31051,7 +31074,7 @@ var _isArrayIter = function (it) {
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return it !== undefined && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
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};
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var $defineProperty$2 =
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var $defineProperty$2 = require_objectDp();
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var createDesc$2 = _propertyDesc;
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var _createProperty = function (object, index, value) {
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@@ -31184,7 +31207,7 @@ var _default$9 = function (instance, Constructor) {
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var $export$3 = _export;
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// 19.1.2.4 / 15.2.3.6 Object.defineProperty(O, P, Attributes)
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$export$3($export$3.S + $export$3.F * !
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$export$3($export$3.S + $export$3.F * !require_descriptors(), 'Object', { defineProperty: require_objectDp().f });
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var $Object$2 = _coreExports.Object;
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var defineProperty$c = function defineProperty(it, key, desc) {
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var META$1 = _uid('meta');
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var isObject$c = _isObject;
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var has$a = _has;
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var setDesc =
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var setDesc = require_objectDp().f;
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var id$1 = 0;
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var isExtensible = Object.isExtensible || function () {
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var core = _coreExports;
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var wksExt$1 = _wksExt;
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var defineProperty$a =
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var defineProperty$a = require_objectDp().f;
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var _wksDefine = function (name) {
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var $Symbol = core.Symbol || (core.Symbol = {} );
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if (name.charAt(0) != '_' && !(name in $Symbol)) defineProperty$a($Symbol, name, { value: wksExt$1.f(name) });
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var toIObject$1 = _toIobject;
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var toPrimitive$1 = _toPrimitive$1;
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var has$9 = _has;
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var IE8_DOM_DEFINE =
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var IE8_DOM_DEFINE = require_ie8DomDefine();
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var gOPD$5 = Object.getOwnPropertyDescriptor;
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_objectGopd.f =
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_objectGopd.f = require_descriptors() ? gOPD$5 : function getOwnPropertyDescriptor(O, P) {
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O = toIObject$1(O);
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P = toPrimitive$1(P, true);
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if (IE8_DOM_DEFINE) try {
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// ECMAScript 6 symbols shim
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var global$2 = _globalExports;
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var has$8 = _has;
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var DESCRIPTORS =
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var DESCRIPTORS = require_descriptors();
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var $export$2 = _export;
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var redefine = _redefine;
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var META = _metaExports.KEY;
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var gOPNExt = _objectGopnExt;
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var $GOPD = _objectGopd;
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var $GOPS = _objectGops;
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var $DP =
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var $DP = require_objectDp();
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var $keys$1 = _objectKeys;
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var gOPD$4 = $GOPD.f;
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var dP = $DP.f;
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@@ -155902,7 +155925,7 @@ class Sequence extends React$3.Component {
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key: i,
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...{
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...shared,
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textLength: textLength - fudge - fudge2,
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textLength: Math.max(0, textLength - fudge - fudge2),
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x: x + fudge / 2,
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lengthAdjust: "spacing"
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}
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@@ -155917,7 +155940,7 @@ class Sequence extends React$3.Component {
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...{
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x: 0 + fudge / 2,
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textLength: (alignmentData ? seqReadWidth : width) - fudge - fudge2
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textLength: Math.max(0, (alignmentData ? seqReadWidth : width) - fudge - fudge2)
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}
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},
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getBoldRegion({ sequence, overlapToBold, rowStart, sequenceLength })
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});
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}
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const textLength2 = charWidth * i.bases.length - fudge - fudge2;
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const textLength2 = Math.max(0, charWidth * i.bases.length - fudge - fudge2);
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insertText.push(
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/* @__PURE__ */ React$3.createElement(
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"text",
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}
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const name = "@teselagen/ove";
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const version = "0.3.
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const version = "0.3.22";
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const main = "./src/index.js";
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const exports$1 = {
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".": {
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@@ -178949,8 +178972,6 @@ class AlignmentView extends React$3.Component {
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delete window.updateAlignmentSelection;
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delete window.Cypress.updateAlignmentSelection;
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}
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const { removeAlignmentFromRedux, id } = this.props;
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removeAlignmentFromRedux({ id });
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this.onShortcutCopy && document.removeEventListener("keydown", this.handleAlignmentCopy);
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}
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handleAlignmentCopy = (event) => {
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@@ -179515,6 +179536,7 @@ ${seqDataToCopy}\r
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vectorInteractionWrapperStyle: {
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overflowY: "hidden"
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},
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withZoomLinearView: false,
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marginWidth: 0,
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linearViewCharWidth: charWidthInLinearView,
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ignoreGapsOnHighlight: true,
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@@ -180367,6 +180389,7 @@ const AlignmentView$1 = compose(
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scrollPercentageToJumpTo,
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pairwiseOverviewAlignmentTracks,
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loading,
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name,
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alignmentAnnotationVisibility,
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alignmentAnnotationLabelVisibility,
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|
180372
180395
|
caretPosition = -1,
|
|
@@ -180440,6 +180463,7 @@ const AlignmentView$1 = compose(
|
|
|
180440
180463
|
unmappedSeqs,
|
|
180441
180464
|
caretPosition,
|
|
180442
180465
|
alignmentId,
|
|
180466
|
+
...name && { alignmentName: name },
|
|
180443
180467
|
stateTrackingId,
|
|
180444
180468
|
sequenceData: {
|
|
180445
180469
|
//pass fake seq data in so editor interactions work
|
|
@@ -180468,12 +180492,12 @@ const AlignmentView$1 = compose(
|
|
|
180468
180492
|
}
|
|
180469
180493
|
});
|
|
180470
180494
|
},
|
|
180471
|
-
alignmentAnnotationLabelVisibilityToggle: (
|
|
180495
|
+
alignmentAnnotationLabelVisibilityToggle: (name2) => {
|
|
180472
180496
|
updateAlignmentViewVisibility({
|
|
180473
180497
|
...alignment,
|
|
180474
180498
|
alignmentAnnotationLabelVisibility: {
|
|
180475
180499
|
...alignment.alignmentAnnotationLabelVisibility,
|
|
180476
|
-
[
|
|
180500
|
+
[name2]: !alignment.alignmentAnnotationLabelVisibility[name2]
|
|
180477
180501
|
}
|
|
180478
180502
|
});
|
|
180479
180503
|
},
|
|
@@ -194605,7 +194629,7 @@ class Editor extends React$3.Component {
|
|
|
194605
194629
|
style: {
|
|
194606
194630
|
zIndex: 15002,
|
|
194607
194631
|
position: "fixed",
|
|
194608
|
-
top:
|
|
194632
|
+
top: 3,
|
|
194609
194633
|
right: 25
|
|
194610
194634
|
}
|
|
194611
194635
|
},
|
package/index.es.js
CHANGED
|
@@ -7404,7 +7404,7 @@ function getPlainObjectKeys(object) {
|
|
|
7404
7404
|
var ownKeys$8 = typeof Reflect !== "undefined" && Reflect.ownKeys ? Reflect.ownKeys : hasGetOwnPropertySymbols ? function (obj) {
|
|
7405
7405
|
return Object.getOwnPropertyNames(obj).concat(Object.getOwnPropertySymbols(obj));
|
|
7406
7406
|
} : /* istanbul ignore next */Object.getOwnPropertyNames;
|
|
7407
|
-
function toPrimitive$
|
|
7407
|
+
function toPrimitive$2(value) {
|
|
7408
7408
|
return value === null ? null : typeof value === "object" ? "" + value : value;
|
|
7409
7409
|
}
|
|
7410
7410
|
function hasProp(target, prop) {
|
|
@@ -8333,7 +8333,7 @@ var ObservableValue = /*#__PURE__*/function (_Atom) {
|
|
|
8333
8333
|
return this.name_ + "[" + this.value_ + "]";
|
|
8334
8334
|
};
|
|
8335
8335
|
_proto.valueOf = function valueOf() {
|
|
8336
|
-
return toPrimitive$
|
|
8336
|
+
return toPrimitive$2(this.get());
|
|
8337
8337
|
};
|
|
8338
8338
|
_proto[_Symbol$toPrimitive] = function () {
|
|
8339
8339
|
return this.valueOf();
|
|
@@ -8561,7 +8561,7 @@ var ComputedValue = /*#__PURE__*/function () {
|
|
|
8561
8561
|
return this.name_ + "[" + this.derivation.toString() + "]";
|
|
8562
8562
|
};
|
|
8563
8563
|
_proto.valueOf = function valueOf() {
|
|
8564
|
-
return toPrimitive$
|
|
8564
|
+
return toPrimitive$2(this.get());
|
|
8565
8565
|
};
|
|
8566
8566
|
_proto[_Symbol$toPrimitive$1] = function () {
|
|
8567
8567
|
return this.valueOf();
|
|
@@ -30261,10 +30261,18 @@ var _fails = function (exec) {
|
|
|
30261
30261
|
}
|
|
30262
30262
|
};
|
|
30263
30263
|
|
|
30264
|
-
|
|
30265
|
-
var
|
|
30266
|
-
|
|
30267
|
-
|
|
30264
|
+
var _descriptors;
|
|
30265
|
+
var hasRequired_descriptors;
|
|
30266
|
+
|
|
30267
|
+
function require_descriptors () {
|
|
30268
|
+
if (hasRequired_descriptors) return _descriptors;
|
|
30269
|
+
hasRequired_descriptors = 1;
|
|
30270
|
+
// Thank's IE8 for his funny defineProperty
|
|
30271
|
+
_descriptors = !_fails(function () {
|
|
30272
|
+
return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
|
|
30273
|
+
});
|
|
30274
|
+
return _descriptors;
|
|
30275
|
+
}
|
|
30268
30276
|
|
|
30269
30277
|
var _domCreate;
|
|
30270
30278
|
var hasRequired_domCreate;
|
|
@@ -30282,9 +30290,17 @@ function require_domCreate () {
|
|
|
30282
30290
|
return _domCreate;
|
|
30283
30291
|
}
|
|
30284
30292
|
|
|
30285
|
-
var _ie8DomDefine
|
|
30286
|
-
|
|
30287
|
-
|
|
30293
|
+
var _ie8DomDefine;
|
|
30294
|
+
var hasRequired_ie8DomDefine;
|
|
30295
|
+
|
|
30296
|
+
function require_ie8DomDefine () {
|
|
30297
|
+
if (hasRequired_ie8DomDefine) return _ie8DomDefine;
|
|
30298
|
+
hasRequired_ie8DomDefine = 1;
|
|
30299
|
+
_ie8DomDefine = !require_descriptors() && !_fails(function () {
|
|
30300
|
+
return Object.defineProperty(require_domCreate()('div'), 'a', { get: function () { return 7; } }).a != 7;
|
|
30301
|
+
});
|
|
30302
|
+
return _ie8DomDefine;
|
|
30303
|
+
}
|
|
30288
30304
|
|
|
30289
30305
|
// 7.1.1 ToPrimitive(input [, PreferredType])
|
|
30290
30306
|
var isObject$d = _isObject;
|
|
@@ -30299,22 +30315,29 @@ var _toPrimitive$1 = function (it, S) {
|
|
|
30299
30315
|
throw TypeError("Can't convert object to primitive value");
|
|
30300
30316
|
};
|
|
30301
30317
|
|
|
30302
|
-
var
|
|
30303
|
-
var IE8_DOM_DEFINE$1 = _ie8DomDefine;
|
|
30304
|
-
var toPrimitive$2 = _toPrimitive$1;
|
|
30305
|
-
var dP$3 = Object.defineProperty;
|
|
30318
|
+
var hasRequired_objectDp;
|
|
30306
30319
|
|
|
30307
|
-
|
|
30308
|
-
|
|
30309
|
-
|
|
30310
|
-
|
|
30311
|
-
|
|
30312
|
-
|
|
30313
|
-
|
|
30314
|
-
|
|
30315
|
-
|
|
30316
|
-
|
|
30317
|
-
|
|
30320
|
+
function require_objectDp () {
|
|
30321
|
+
if (hasRequired_objectDp) return _objectDp;
|
|
30322
|
+
hasRequired_objectDp = 1;
|
|
30323
|
+
var anObject = _anObject;
|
|
30324
|
+
var IE8_DOM_DEFINE = require_ie8DomDefine();
|
|
30325
|
+
var toPrimitive = _toPrimitive$1;
|
|
30326
|
+
var dP = Object.defineProperty;
|
|
30327
|
+
|
|
30328
|
+
_objectDp.f = require_descriptors() ? Object.defineProperty : function defineProperty(O, P, Attributes) {
|
|
30329
|
+
anObject(O);
|
|
30330
|
+
P = toPrimitive(P, true);
|
|
30331
|
+
anObject(Attributes);
|
|
30332
|
+
if (IE8_DOM_DEFINE) try {
|
|
30333
|
+
return dP(O, P, Attributes);
|
|
30334
|
+
} catch (e) { /* empty */ }
|
|
30335
|
+
if ('get' in Attributes || 'set' in Attributes) throw TypeError('Accessors not supported!');
|
|
30336
|
+
if ('value' in Attributes) O[P] = Attributes.value;
|
|
30337
|
+
return O;
|
|
30338
|
+
};
|
|
30339
|
+
return _objectDp;
|
|
30340
|
+
}
|
|
30318
30341
|
|
|
30319
30342
|
var _propertyDesc = function (bitmap, value) {
|
|
30320
30343
|
return {
|
|
@@ -30325,9 +30348,9 @@ var _propertyDesc = function (bitmap, value) {
|
|
|
30325
30348
|
};
|
|
30326
30349
|
};
|
|
30327
30350
|
|
|
30328
|
-
var dP$2 =
|
|
30351
|
+
var dP$2 = require_objectDp();
|
|
30329
30352
|
var createDesc$3 = _propertyDesc;
|
|
30330
|
-
var _hide =
|
|
30353
|
+
var _hide = require_descriptors() ? function (object, key, value) {
|
|
30331
30354
|
return dP$2.f(object, key, createDesc$3(1, value));
|
|
30332
30355
|
} : function (object, key, value) {
|
|
30333
30356
|
object[key] = value;
|
|
@@ -30557,7 +30580,7 @@ function require_objectAssign () {
|
|
|
30557
30580
|
if (hasRequired_objectAssign) return _objectAssign;
|
|
30558
30581
|
hasRequired_objectAssign = 1;
|
|
30559
30582
|
// 19.1.2.1 Object.assign(target, source, ...)
|
|
30560
|
-
var DESCRIPTORS =
|
|
30583
|
+
var DESCRIPTORS = require_descriptors();
|
|
30561
30584
|
var getKeys = _objectKeys;
|
|
30562
30585
|
var gOPS = _objectGops;
|
|
30563
30586
|
var pIE = _objectPie;
|
|
@@ -30633,11 +30656,11 @@ var _iterators = {};
|
|
|
30633
30656
|
|
|
30634
30657
|
var _redefine = _hide;
|
|
30635
30658
|
|
|
30636
|
-
var dP$1 =
|
|
30659
|
+
var dP$1 = require_objectDp();
|
|
30637
30660
|
var anObject$4 = _anObject;
|
|
30638
30661
|
var getKeys$1 = _objectKeys;
|
|
30639
30662
|
|
|
30640
|
-
var _objectDps =
|
|
30663
|
+
var _objectDps = require_descriptors() ? Object.defineProperties : function defineProperties(O, Properties) {
|
|
30641
30664
|
anObject$4(O);
|
|
30642
30665
|
var keys = getKeys$1(Properties);
|
|
30643
30666
|
var length = keys.length;
|
|
@@ -30716,7 +30739,7 @@ $exports.store = store$2;
|
|
|
30716
30739
|
|
|
30717
30740
|
var _wksExports = _wks.exports;
|
|
30718
30741
|
|
|
30719
|
-
var def =
|
|
30742
|
+
var def = require_objectDp().f;
|
|
30720
30743
|
var has$c = _has;
|
|
30721
30744
|
var TAG$1 = _wksExports('toStringTag');
|
|
30722
30745
|
|
|
@@ -31030,7 +31053,7 @@ var _isArrayIter = function (it) {
|
|
|
31030
31053
|
return it !== undefined && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
|
|
31031
31054
|
};
|
|
31032
31055
|
|
|
31033
|
-
var $defineProperty$2 =
|
|
31056
|
+
var $defineProperty$2 = require_objectDp();
|
|
31034
31057
|
var createDesc$2 = _propertyDesc;
|
|
31035
31058
|
|
|
31036
31059
|
var _createProperty = function (object, index, value) {
|
|
@@ -31163,7 +31186,7 @@ var _default$9 = function (instance, Constructor) {
|
|
|
31163
31186
|
|
|
31164
31187
|
var $export$3 = _export;
|
|
31165
31188
|
// 19.1.2.4 / 15.2.3.6 Object.defineProperty(O, P, Attributes)
|
|
31166
|
-
$export$3($export$3.S + $export$3.F * !
|
|
31189
|
+
$export$3($export$3.S + $export$3.F * !require_descriptors(), 'Object', { defineProperty: require_objectDp().f });
|
|
31167
31190
|
|
|
31168
31191
|
var $Object$2 = _coreExports.Object;
|
|
31169
31192
|
var defineProperty$c = function defineProperty(it, key, desc) {
|
|
@@ -31211,7 +31234,7 @@ var _meta = {exports: {}};
|
|
|
31211
31234
|
var META$1 = _uid('meta');
|
|
31212
31235
|
var isObject$c = _isObject;
|
|
31213
31236
|
var has$a = _has;
|
|
31214
|
-
var setDesc =
|
|
31237
|
+
var setDesc = require_objectDp().f;
|
|
31215
31238
|
var id$1 = 0;
|
|
31216
31239
|
var isExtensible = Object.isExtensible || function () {
|
|
31217
31240
|
return true;
|
|
@@ -31266,7 +31289,7 @@ var _metaExports = _meta.exports;
|
|
|
31266
31289
|
|
|
31267
31290
|
var core = _coreExports;
|
|
31268
31291
|
var wksExt$1 = _wksExt;
|
|
31269
|
-
var defineProperty$a =
|
|
31292
|
+
var defineProperty$a = require_objectDp().f;
|
|
31270
31293
|
var _wksDefine = function (name) {
|
|
31271
31294
|
var $Symbol = core.Symbol || (core.Symbol = {} );
|
|
31272
31295
|
if (name.charAt(0) != '_' && !(name in $Symbol)) defineProperty$a($Symbol, name, { value: wksExt$1.f(name) });
|
|
@@ -31333,10 +31356,10 @@ var createDesc$1 = _propertyDesc;
|
|
|
31333
31356
|
var toIObject$1 = _toIobject;
|
|
31334
31357
|
var toPrimitive$1 = _toPrimitive$1;
|
|
31335
31358
|
var has$9 = _has;
|
|
31336
|
-
var IE8_DOM_DEFINE =
|
|
31359
|
+
var IE8_DOM_DEFINE = require_ie8DomDefine();
|
|
31337
31360
|
var gOPD$5 = Object.getOwnPropertyDescriptor;
|
|
31338
31361
|
|
|
31339
|
-
_objectGopd.f =
|
|
31362
|
+
_objectGopd.f = require_descriptors() ? gOPD$5 : function getOwnPropertyDescriptor(O, P) {
|
|
31340
31363
|
O = toIObject$1(O);
|
|
31341
31364
|
P = toPrimitive$1(P, true);
|
|
31342
31365
|
if (IE8_DOM_DEFINE) try {
|
|
@@ -31348,7 +31371,7 @@ _objectGopd.f = _descriptors ? gOPD$5 : function getOwnPropertyDescriptor(O, P)
|
|
|
31348
31371
|
// ECMAScript 6 symbols shim
|
|
31349
31372
|
var global$2 = _globalExports;
|
|
31350
31373
|
var has$8 = _has;
|
|
31351
|
-
var DESCRIPTORS =
|
|
31374
|
+
var DESCRIPTORS = require_descriptors();
|
|
31352
31375
|
var $export$2 = _export;
|
|
31353
31376
|
var redefine = _redefine;
|
|
31354
31377
|
var META = _metaExports.KEY;
|
|
@@ -31371,7 +31394,7 @@ var _create$1 = _objectCreate;
|
|
|
31371
31394
|
var gOPNExt = _objectGopnExt;
|
|
31372
31395
|
var $GOPD = _objectGopd;
|
|
31373
31396
|
var $GOPS = _objectGops;
|
|
31374
|
-
var $DP =
|
|
31397
|
+
var $DP = require_objectDp();
|
|
31375
31398
|
var $keys$1 = _objectKeys;
|
|
31376
31399
|
var gOPD$4 = $GOPD.f;
|
|
31377
31400
|
var dP = $DP.f;
|
|
@@ -155881,7 +155904,7 @@ class Sequence extends React__default$1.Component {
|
|
|
155881
155904
|
key: i,
|
|
155882
155905
|
...{
|
|
155883
155906
|
...shared,
|
|
155884
|
-
textLength: textLength - fudge - fudge2,
|
|
155907
|
+
textLength: Math.max(0, textLength - fudge - fudge2),
|
|
155885
155908
|
x: x + fudge / 2,
|
|
155886
155909
|
lengthAdjust: "spacing"
|
|
155887
155910
|
}
|
|
@@ -155896,7 +155919,7 @@ class Sequence extends React__default$1.Component {
|
|
|
155896
155919
|
...{
|
|
155897
155920
|
...shared,
|
|
155898
155921
|
x: 0 + fudge / 2,
|
|
155899
|
-
textLength: (alignmentData ? seqReadWidth : width) - fudge - fudge2
|
|
155922
|
+
textLength: Math.max(0, (alignmentData ? seqReadWidth : width) - fudge - fudge2)
|
|
155900
155923
|
}
|
|
155901
155924
|
},
|
|
155902
155925
|
getBoldRegion({ sequence, overlapToBold, rowStart, sequenceLength })
|
|
@@ -157578,7 +157601,7 @@ function getBasesToShow({
|
|
|
157578
157601
|
insertStart
|
|
157579
157602
|
});
|
|
157580
157603
|
}
|
|
157581
|
-
const textLength2 = charWidth * i.bases.length - fudge - fudge2;
|
|
157604
|
+
const textLength2 = Math.max(0, charWidth * i.bases.length - fudge - fudge2);
|
|
157582
157605
|
insertText.push(
|
|
157583
157606
|
/* @__PURE__ */ React__default$1.createElement(
|
|
157584
157607
|
"text",
|
|
@@ -161149,7 +161172,7 @@ function showFileDialog({ multiple = false, onSelect }) {
|
|
|
161149
161172
|
}
|
|
161150
161173
|
|
|
161151
161174
|
const name = "@teselagen/ove";
|
|
161152
|
-
const version = "0.3.
|
|
161175
|
+
const version = "0.3.22";
|
|
161153
161176
|
const main = "./src/index.js";
|
|
161154
161177
|
const exports$1 = {
|
|
161155
161178
|
".": {
|
|
@@ -178928,8 +178951,6 @@ class AlignmentView extends React__default$1.Component {
|
|
|
178928
178951
|
delete window.updateAlignmentSelection;
|
|
178929
178952
|
delete window.Cypress.updateAlignmentSelection;
|
|
178930
178953
|
}
|
|
178931
|
-
const { removeAlignmentFromRedux, id } = this.props;
|
|
178932
|
-
removeAlignmentFromRedux({ id });
|
|
178933
178954
|
this.onShortcutCopy && document.removeEventListener("keydown", this.handleAlignmentCopy);
|
|
178934
178955
|
}
|
|
178935
178956
|
handleAlignmentCopy = (event) => {
|
|
@@ -179494,6 +179515,7 @@ ${seqDataToCopy}\r
|
|
|
179494
179515
|
vectorInteractionWrapperStyle: {
|
|
179495
179516
|
overflowY: "hidden"
|
|
179496
179517
|
},
|
|
179518
|
+
withZoomLinearView: false,
|
|
179497
179519
|
marginWidth: 0,
|
|
179498
179520
|
linearViewCharWidth: charWidthInLinearView,
|
|
179499
179521
|
ignoreGapsOnHighlight: true,
|
|
@@ -180346,6 +180368,7 @@ const AlignmentView$1 = compose(
|
|
|
180346
180368
|
scrollPercentageToJumpTo,
|
|
180347
180369
|
pairwiseOverviewAlignmentTracks,
|
|
180348
180370
|
loading,
|
|
180371
|
+
name,
|
|
180349
180372
|
alignmentAnnotationVisibility,
|
|
180350
180373
|
alignmentAnnotationLabelVisibility,
|
|
180351
180374
|
caretPosition = -1,
|
|
@@ -180419,6 +180442,7 @@ const AlignmentView$1 = compose(
|
|
|
180419
180442
|
unmappedSeqs,
|
|
180420
180443
|
caretPosition,
|
|
180421
180444
|
alignmentId,
|
|
180445
|
+
...name && { alignmentName: name },
|
|
180422
180446
|
stateTrackingId,
|
|
180423
180447
|
sequenceData: {
|
|
180424
180448
|
//pass fake seq data in so editor interactions work
|
|
@@ -180447,12 +180471,12 @@ const AlignmentView$1 = compose(
|
|
|
180447
180471
|
}
|
|
180448
180472
|
});
|
|
180449
180473
|
},
|
|
180450
|
-
alignmentAnnotationLabelVisibilityToggle: (
|
|
180474
|
+
alignmentAnnotationLabelVisibilityToggle: (name2) => {
|
|
180451
180475
|
updateAlignmentViewVisibility({
|
|
180452
180476
|
...alignment,
|
|
180453
180477
|
alignmentAnnotationLabelVisibility: {
|
|
180454
180478
|
...alignment.alignmentAnnotationLabelVisibility,
|
|
180455
|
-
[
|
|
180479
|
+
[name2]: !alignment.alignmentAnnotationLabelVisibility[name2]
|
|
180456
180480
|
}
|
|
180457
180481
|
});
|
|
180458
180482
|
},
|
|
@@ -194584,7 +194608,7 @@ class Editor extends React__default$1.Component {
|
|
|
194584
194608
|
style: {
|
|
194585
194609
|
zIndex: 15002,
|
|
194586
194610
|
position: "fixed",
|
|
194587
|
-
top:
|
|
194611
|
+
top: 3,
|
|
194588
194612
|
right: 25
|
|
194589
194613
|
}
|
|
194590
194614
|
},
|
package/index.umd.js
CHANGED
|
@@ -57196,12 +57196,20 @@
|
|
|
57196
57196
|
return toString$4.call(it).slice(8, -1);
|
|
57197
57197
|
};
|
|
57198
57198
|
|
|
57199
|
-
|
|
57200
|
-
var
|
|
57201
|
-
|
|
57202
|
-
|
|
57203
|
-
|
|
57204
|
-
|
|
57199
|
+
var _iobject;
|
|
57200
|
+
var hasRequired_iobject;
|
|
57201
|
+
|
|
57202
|
+
function require_iobject () {
|
|
57203
|
+
if (hasRequired_iobject) return _iobject;
|
|
57204
|
+
hasRequired_iobject = 1;
|
|
57205
|
+
// fallback for non-array-like ES3 and non-enumerable old V8 strings
|
|
57206
|
+
var cof = _cof;
|
|
57207
|
+
// eslint-disable-next-line no-prototype-builtins
|
|
57208
|
+
_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
|
|
57209
|
+
return cof(it) == 'String' ? it.split('') : Object(it);
|
|
57210
|
+
};
|
|
57211
|
+
return _iobject;
|
|
57212
|
+
}
|
|
57205
57213
|
|
|
57206
57214
|
// 7.2.1 RequireObjectCoercible(argument)
|
|
57207
57215
|
var _defined = function (it) {
|
|
@@ -57210,7 +57218,7 @@
|
|
|
57210
57218
|
};
|
|
57211
57219
|
|
|
57212
57220
|
// to indexed object, toObject with fallback for non-array-like ES3 strings
|
|
57213
|
-
var IObject =
|
|
57221
|
+
var IObject = require_iobject();
|
|
57214
57222
|
var defined$2 = _defined;
|
|
57215
57223
|
var _toIobject = function (it) {
|
|
57216
57224
|
return IObject(defined$2(it));
|
|
@@ -57330,7 +57338,14 @@
|
|
|
57330
57338
|
|
|
57331
57339
|
var _objectPie = {};
|
|
57332
57340
|
|
|
57333
|
-
|
|
57341
|
+
var hasRequired_objectPie;
|
|
57342
|
+
|
|
57343
|
+
function require_objectPie () {
|
|
57344
|
+
if (hasRequired_objectPie) return _objectPie;
|
|
57345
|
+
hasRequired_objectPie = 1;
|
|
57346
|
+
_objectPie.f = {}.propertyIsEnumerable;
|
|
57347
|
+
return _objectPie;
|
|
57348
|
+
}
|
|
57334
57349
|
|
|
57335
57350
|
// 7.1.13 ToObject(argument)
|
|
57336
57351
|
var defined$1 = _defined;
|
|
@@ -57348,9 +57363,9 @@
|
|
|
57348
57363
|
var DESCRIPTORS = require_descriptors();
|
|
57349
57364
|
var getKeys = _objectKeys;
|
|
57350
57365
|
var gOPS = _objectGops;
|
|
57351
|
-
var pIE =
|
|
57366
|
+
var pIE = require_objectPie();
|
|
57352
57367
|
var toObject = _toObject;
|
|
57353
|
-
var IObject =
|
|
57368
|
+
var IObject = require_iobject();
|
|
57354
57369
|
var $assign = Object.assign;
|
|
57355
57370
|
|
|
57356
57371
|
// should work with symbols and should have deterministic property order (V8 bug)
|
|
@@ -58063,7 +58078,7 @@
|
|
|
58063
58078
|
// all enumerable object keys, includes symbols
|
|
58064
58079
|
var getKeys = _objectKeys;
|
|
58065
58080
|
var gOPS$1 = _objectGops;
|
|
58066
|
-
var pIE$1 =
|
|
58081
|
+
var pIE$1 = require_objectPie();
|
|
58067
58082
|
var _enumKeys = function (it) {
|
|
58068
58083
|
var result = getKeys(it);
|
|
58069
58084
|
var getSymbols = gOPS$1.f;
|
|
@@ -58116,7 +58131,7 @@
|
|
|
58116
58131
|
|
|
58117
58132
|
var _objectGopd = {};
|
|
58118
58133
|
|
|
58119
|
-
var pIE =
|
|
58134
|
+
var pIE = require_objectPie();
|
|
58120
58135
|
var createDesc$1 = _propertyDesc;
|
|
58121
58136
|
var toIObject$1 = _toIobject;
|
|
58122
58137
|
var toPrimitive$1 = _toPrimitive$1;
|
|
@@ -58284,7 +58299,7 @@
|
|
|
58284
58299
|
$GOPD.f = $getOwnPropertyDescriptor;
|
|
58285
58300
|
$DP.f = $defineProperty;
|
|
58286
58301
|
_objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
|
|
58287
|
-
|
|
58302
|
+
require_objectPie().f = $propertyIsEnumerable;
|
|
58288
58303
|
$GOPS.f = $getOwnPropertySymbols;
|
|
58289
58304
|
|
|
58290
58305
|
if (DESCRIPTORS && !_library) {
|
|
@@ -183547,7 +183562,7 @@
|
|
|
183547
183562
|
key: i,
|
|
183548
183563
|
...{
|
|
183549
183564
|
...shared,
|
|
183550
|
-
textLength: textLength - fudge - fudge2,
|
|
183565
|
+
textLength: Math.max(0, textLength - fudge - fudge2),
|
|
183551
183566
|
x: x + fudge / 2,
|
|
183552
183567
|
lengthAdjust: "spacing"
|
|
183553
183568
|
}
|
|
@@ -183562,7 +183577,7 @@
|
|
|
183562
183577
|
...{
|
|
183563
183578
|
...shared,
|
|
183564
183579
|
x: 0 + fudge / 2,
|
|
183565
|
-
textLength: (alignmentData ? seqReadWidth : width) - fudge - fudge2
|
|
183580
|
+
textLength: Math.max(0, (alignmentData ? seqReadWidth : width) - fudge - fudge2)
|
|
183566
183581
|
}
|
|
183567
183582
|
},
|
|
183568
183583
|
getBoldRegion({ sequence, overlapToBold, rowStart, sequenceLength })
|
|
@@ -185244,7 +185259,7 @@ double click --> edit`}`;
|
|
|
185244
185259
|
insertStart
|
|
185245
185260
|
});
|
|
185246
185261
|
}
|
|
185247
|
-
const textLength2 = charWidth * i.bases.length - fudge - fudge2;
|
|
185262
|
+
const textLength2 = Math.max(0, charWidth * i.bases.length - fudge - fudge2);
|
|
185248
185263
|
insertText.push(
|
|
185249
185264
|
/* @__PURE__ */ React$3.createElement(
|
|
185250
185265
|
"text",
|
|
@@ -188777,7 +188792,7 @@ double click --> edit`}`;
|
|
|
188777
188792
|
}
|
|
188778
188793
|
|
|
188779
188794
|
const name = "@teselagen/ove";
|
|
188780
|
-
const version = "0.3.
|
|
188795
|
+
const version = "0.3.22";
|
|
188781
188796
|
const main = "./src/index.js";
|
|
188782
188797
|
const exports$1 = {
|
|
188783
188798
|
".": {
|
|
@@ -203940,8 +203955,6 @@ double click --> edit`}`;
|
|
|
203940
203955
|
delete window.updateAlignmentSelection;
|
|
203941
203956
|
delete window.Cypress.updateAlignmentSelection;
|
|
203942
203957
|
}
|
|
203943
|
-
const { removeAlignmentFromRedux, id } = this.props;
|
|
203944
|
-
removeAlignmentFromRedux({ id });
|
|
203945
203958
|
this.onShortcutCopy && document.removeEventListener("keydown", this.handleAlignmentCopy);
|
|
203946
203959
|
}
|
|
203947
203960
|
handleAlignmentCopy = (event) => {
|
|
@@ -204506,6 +204519,7 @@ ${seqDataToCopy}\r
|
|
|
204506
204519
|
vectorInteractionWrapperStyle: {
|
|
204507
204520
|
overflowY: "hidden"
|
|
204508
204521
|
},
|
|
204522
|
+
withZoomLinearView: false,
|
|
204509
204523
|
marginWidth: 0,
|
|
204510
204524
|
linearViewCharWidth: charWidthInLinearView,
|
|
204511
204525
|
ignoreGapsOnHighlight: true,
|
|
@@ -205358,6 +205372,7 @@ ${seqDataToCopy}\r
|
|
|
205358
205372
|
scrollPercentageToJumpTo,
|
|
205359
205373
|
pairwiseOverviewAlignmentTracks,
|
|
205360
205374
|
loading,
|
|
205375
|
+
name,
|
|
205361
205376
|
alignmentAnnotationVisibility,
|
|
205362
205377
|
alignmentAnnotationLabelVisibility,
|
|
205363
205378
|
caretPosition = -1,
|
|
@@ -205431,6 +205446,7 @@ ${seqDataToCopy}\r
|
|
|
205431
205446
|
unmappedSeqs,
|
|
205432
205447
|
caretPosition,
|
|
205433
205448
|
alignmentId,
|
|
205449
|
+
...name && { alignmentName: name },
|
|
205434
205450
|
stateTrackingId,
|
|
205435
205451
|
sequenceData: {
|
|
205436
205452
|
//pass fake seq data in so editor interactions work
|
|
@@ -205459,12 +205475,12 @@ ${seqDataToCopy}\r
|
|
|
205459
205475
|
}
|
|
205460
205476
|
});
|
|
205461
205477
|
},
|
|
205462
|
-
alignmentAnnotationLabelVisibilityToggle: (
|
|
205478
|
+
alignmentAnnotationLabelVisibilityToggle: (name2) => {
|
|
205463
205479
|
updateAlignmentViewVisibility({
|
|
205464
205480
|
...alignment,
|
|
205465
205481
|
alignmentAnnotationLabelVisibility: {
|
|
205466
205482
|
...alignment.alignmentAnnotationLabelVisibility,
|
|
205467
|
-
[
|
|
205483
|
+
[name2]: !alignment.alignmentAnnotationLabelVisibility[name2]
|
|
205468
205484
|
}
|
|
205469
205485
|
});
|
|
205470
205486
|
},
|
|
@@ -218669,7 +218685,7 @@ ${seqDataToCopy}\r
|
|
|
218669
218685
|
style: {
|
|
218670
218686
|
zIndex: 15002,
|
|
218671
218687
|
position: "fixed",
|
|
218672
|
-
top:
|
|
218688
|
+
top: 3,
|
|
218673
218689
|
right: 25
|
|
218674
218690
|
}
|
|
218675
218691
|
},
|
package/package.json
CHANGED
|
@@ -170,8 +170,8 @@ export class AlignmentView extends React.Component {
|
|
|
170
170
|
delete window.updateAlignmentSelection;
|
|
171
171
|
delete window.Cypress.updateAlignmentSelection;
|
|
172
172
|
}
|
|
173
|
-
const { removeAlignmentFromRedux, id } = this.props;
|
|
174
|
-
removeAlignmentFromRedux({ id });
|
|
173
|
+
// const { removeAlignmentFromRedux, id } = this.props;
|
|
174
|
+
// removeAlignmentFromRedux({ id });
|
|
175
175
|
this.onShortcutCopy &&
|
|
176
176
|
document.removeEventListener("keydown", this.handleAlignmentCopy);
|
|
177
177
|
}
|
|
@@ -922,6 +922,7 @@ export class AlignmentView extends React.Component {
|
|
|
922
922
|
vectorInteractionWrapperStyle: {
|
|
923
923
|
overflowY: "hidden"
|
|
924
924
|
},
|
|
925
|
+
withZoomLinearView: false,
|
|
925
926
|
marginWidth: 0,
|
|
926
927
|
linearViewCharWidth: charWidthInLinearView,
|
|
927
928
|
ignoreGapsOnHighlight: true,
|
|
@@ -1888,6 +1889,7 @@ export default compose(
|
|
|
1888
1889
|
scrollPercentageToJumpTo,
|
|
1889
1890
|
pairwiseOverviewAlignmentTracks,
|
|
1890
1891
|
loading,
|
|
1892
|
+
name,
|
|
1891
1893
|
alignmentAnnotationVisibility,
|
|
1892
1894
|
alignmentAnnotationLabelVisibility,
|
|
1893
1895
|
caretPosition = -1,
|
|
@@ -1967,6 +1969,7 @@ export default compose(
|
|
|
1967
1969
|
unmappedSeqs,
|
|
1968
1970
|
caretPosition,
|
|
1969
1971
|
alignmentId,
|
|
1972
|
+
...(name && { alignmentName: name }),
|
|
1970
1973
|
stateTrackingId,
|
|
1971
1974
|
sequenceData: {
|
|
1972
1975
|
//pass fake seq data in so editor interactions work
|
|
@@ -17,6 +17,7 @@
|
|
|
17
17
|
|
|
18
18
|
.alignmentViewTrackContainer .veLinearView .veRowItemWrapper {
|
|
19
19
|
display: block;
|
|
20
|
+
overflow-x: hidden;
|
|
20
21
|
}
|
|
21
22
|
|
|
22
23
|
.alignmentHolder::-webkit-scrollbar {
|
|
@@ -67,6 +68,9 @@
|
|
|
67
68
|
top: 0;
|
|
68
69
|
}
|
|
69
70
|
|
|
71
|
+
.tg-reflex-element-inner .alignmentView {
|
|
72
|
+
height: unset !important;
|
|
73
|
+
}
|
|
70
74
|
.veTracksAndAlignmentHolder {
|
|
71
75
|
position: relative;
|
|
72
76
|
width: fit-content;
|
package/src/Editor/index.js
CHANGED
package/src/RowItem/Sequence.js
CHANGED
|
@@ -111,7 +111,7 @@ class Sequence extends React.Component {
|
|
|
111
111
|
key={i}
|
|
112
112
|
{...{
|
|
113
113
|
...shared,
|
|
114
|
-
textLength: textLength - fudge - fudge2,
|
|
114
|
+
textLength: Math.max(0,textLength - fudge - fudge2),
|
|
115
115
|
x: x + fudge / 2,
|
|
116
116
|
lengthAdjust: "spacing"
|
|
117
117
|
}}
|
|
@@ -126,7 +126,7 @@ class Sequence extends React.Component {
|
|
|
126
126
|
{...{
|
|
127
127
|
...shared,
|
|
128
128
|
x: 0 + fudge / 2,
|
|
129
|
-
textLength: (alignmentData ? seqReadWidth : width) - fudge - fudge2
|
|
129
|
+
textLength: Math.max(0,(alignmentData ? seqReadWidth : width) - fudge - fudge2)
|
|
130
130
|
}}
|
|
131
131
|
>
|
|
132
132
|
{getBoldRegion({ sequence, overlapToBold, rowStart, sequenceLength })}
|
|
@@ -106,7 +106,7 @@ export function getBasesToShow({
|
|
|
106
106
|
insertStart
|
|
107
107
|
});
|
|
108
108
|
}
|
|
109
|
-
const textLength = charWidth * i.bases.length - fudge - fudge2;
|
|
109
|
+
const textLength = Math.max(0,charWidth * i.bases.length - fudge - fudge2);
|
|
110
110
|
insertText.push(
|
|
111
111
|
<text
|
|
112
112
|
style={{ pointerEvents: "none" }}
|
package/src/ToolBar/index.js
CHANGED
package/style.css
CHANGED
|
@@ -11016,6 +11016,7 @@ li.bp3-menu-divider:last-child {
|
|
|
11016
11016
|
|
|
11017
11017
|
.alignmentViewTrackContainer .veLinearView .veRowItemWrapper {
|
|
11018
11018
|
display: block;
|
|
11019
|
+
overflow-x: hidden;
|
|
11019
11020
|
}
|
|
11020
11021
|
|
|
11021
11022
|
.alignmentHolder::-webkit-scrollbar {
|
|
@@ -11066,6 +11067,9 @@ li.bp3-menu-divider:last-child {
|
|
|
11066
11067
|
top: 0;
|
|
11067
11068
|
}
|
|
11068
11069
|
|
|
11070
|
+
.tg-reflex-element-inner .alignmentView {
|
|
11071
|
+
height: unset !important;
|
|
11072
|
+
}
|
|
11069
11073
|
.veTracksAndAlignmentHolder {
|
|
11070
11074
|
position: relative;
|
|
11071
11075
|
width: fit-content;
|