@teselagen/ove 0.3.19 → 0.3.21

package/index.cjs.js

@@ -30159,6 +30159,8 @@ function DialogFooter({
   style,
   onClick = lodashExports.noop,
   secondaryAction,
+  secondaryDisabled,
+  secondaryNotMinimal,
   intent = core$5.Intent.PRIMARY,
   secondaryIntent,
   backText = "Back",
@@ -30190,7 +30192,8 @@ function DialogFooter({
       core$5.Button,
       {
         intent: secondaryIntent,
-        className: core$5.Classes.MINIMAL + " " + secondaryClassName,
+        disabled: secondaryDisabled,
+        className: (!secondaryNotMinimal ? core$5.Classes.MINIMAL : "") + " " + secondaryClassName,
         text: secondaryText,
         onClick: secondaryAction || hideModal || function() {
           try {
@@ -30426,20 +30429,12 @@ var _cof = function (it) {
   return toString$6.call(it).slice(8, -1);
 };
 
-var _iobject;
-var hasRequired_iobject;
-
-function require_iobject () {
-	if (hasRequired_iobject) return _iobject;
-	hasRequired_iobject = 1;
-	// fallback for non-array-like ES3 and non-enumerable old V8 strings
-	var cof = _cof;
-	// eslint-disable-next-line no-prototype-builtins
-	_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
-	  return cof(it) == 'String' ? it.split('') : Object(it);
-	};
-	return _iobject;
-}
+// fallback for non-array-like ES3 and non-enumerable old V8 strings
+var cof$2 = _cof;
+// eslint-disable-next-line no-prototype-builtins
+var _iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
+  return cof$2(it) == 'String' ? it.split('') : Object(it);
+};
 
 // 7.2.1 RequireObjectCoercible(argument)
 var _defined = function (it) {
@@ -30448,7 +30443,7 @@ var _defined = function (it) {
 };
 
 // to indexed object, toObject with fallback for non-array-like ES3 strings
-var IObject = require_iobject();
+var IObject = _iobject;
 var defined$2 = _defined;
 var _toIobject = function (it) {
   return IObject(defined$2(it));
@@ -30568,14 +30563,7 @@ _objectGops.f = Object.getOwnPropertySymbols;
 
 var _objectPie = {};
 
-var hasRequired_objectPie;
-
-function require_objectPie () {
-	if (hasRequired_objectPie) return _objectPie;
-	hasRequired_objectPie = 1;
-	_objectPie.f = {}.propertyIsEnumerable;
-	return _objectPie;
-}
+_objectPie.f = {}.propertyIsEnumerable;
 
 // 7.1.13 ToObject(argument)
 var defined$1 = _defined;
@@ -30593,9 +30581,9 @@ function require_objectAssign () {
 	var DESCRIPTORS = _descriptors;
 	var getKeys = _objectKeys;
 	var gOPS = _objectGops;
-	var pIE = require_objectPie();
+	var pIE = _objectPie;
 	var toObject = _toObject;
-	var IObject = require_iobject();
+	var IObject = _iobject;
 	var $assign = Object.assign;
 
 	// should work with symbols and should have deterministic property order (V8 bug)
@@ -31308,7 +31296,7 @@ var _wksDefine = function (name) {
 // all enumerable object keys, includes symbols
 var getKeys = _objectKeys;
 var gOPS$1 = _objectGops;
-var pIE$1 = require_objectPie();
+var pIE$1 = _objectPie;
 var _enumKeys = function (it) {
   var result = getKeys(it);
   var getSymbols = gOPS$1.f;
@@ -31361,7 +31349,7 @@ _objectGopnExt.f = function getOwnPropertyNames(it) {
 
 var _objectGopd = {};
 
-var pIE = require_objectPie();
+var pIE = _objectPie;
 var createDesc$1 = _propertyDesc;
 var toIObject$1 = _toIobject;
 var toPrimitive$1 = _toPrimitive$1;
@@ -31529,7 +31517,7 @@ if (!USE_NATIVE) {
   $GOPD.f = $getOwnPropertyDescriptor;
   $DP.f = $defineProperty$1;
   _objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
-  require_objectPie().f = $propertyIsEnumerable;
+  _objectPie.f = $propertyIsEnumerable;
   $GOPS.f = $getOwnPropertySymbols;
 
   if (DESCRIPTORS && !_library) {
@@ -66137,7 +66125,7 @@ class TgSelect extends React$3.Component {
       if (isTagSelect && item.value && item.value.includes && item.value.includes(":")) {
         const topLevelId = item.value.split(":")[0];
         valArray = valArray.filter((val) => {
-          if (val.value && val.value.includes && val.value.includes(":")) {
+          if (val?.value && val.value.includes && val.value.includes(":")) {
             const valId = val.value.split(":")[0];
             if (valId === topLevelId) {
               return false;
@@ -66225,7 +66213,7 @@ class TgSelect extends React$3.Component {
   getTagProps = (label) => {
     const { multi, value = [], disabled: _disabled } = this.props;
     const val = Array.isArray(value) ? value : [value];
-    const matchingVal = val.find((op) => op.label === label);
+    const matchingVal = val.find((op) => op?.label === label);
     const disabled = _disabled || matchingVal && matchingVal.disabled;
     const className = matchingVal && matchingVal.className;
     return {
@@ -83364,7 +83352,7 @@ const renderReactSelect = (props) => {
     }
   } else if (Array.isArray(value)) {
     valueToUse = value.map((val) => {
-      if (val.userCreated) {
+      if (val?.userCreated) {
         return {
           label: val.value,
           value: val
@@ -83391,10 +83379,10 @@ const renderReactSelect = (props) => {
       let valToPass;
       if (Array.isArray(valOrVals)) {
         valToPass = valOrVals.map(function(val) {
-          if (val.userCreated) {
+          if (val?.userCreated) {
             return val;
           }
-          return val.value;
+          return val?.value;
         });
       } else if (valOrVals) {
         if (valOrVals.userCreated) {
@@ -89393,16 +89381,22 @@ class AlertWrapper extends React$3.Component {
   state = { isOpen: true };
   render() {
     const {
+      title,
       handleClose,
       text,
       resolve,
       noCancelButton,
       content,
       className,
+      thirdButtonNotMinimal,
+      thirdButtonClassName,
       thirdButtonText,
       thirdButtonIntent,
+      fourthButtonNotMinimal,
+      fourthButtonClassName,
       fourthButtonText,
       fourthButtonIntent,
+      handleSubmit,
       canEscapeKeyCancel,
       confirmButtonText = "OK",
       cancelButtonText = "Cancel",
@@ -89417,19 +89411,28 @@ class AlertWrapper extends React$3.Component {
     return /* @__PURE__ */ React$3.createElement(
       core$5.Dialog,
       {
-        className: `bp3-alert ${className || ""}`,
+        title,
+        className: (title ? "" : "bp3-alert") + ` ${className || ""}`,
         isOpen: this.state.isOpen,
         intent,
         cancelButtonText,
         onCancel: cancelButtonText ? () => doClose(false) : void 0,
-        onConfirm: () => doClose(true),
+        onConfirm: handleSubmit ? handleSubmit((v) => doClose(v)) : () => doClose(true),
         ...rest,
         ...noCancelButton && {
           onCancel: void 0,
           cancelButtonText: void 0
         }
       },
-      /* @__PURE__ */ React$3.createElement("div", { className: "bp3-alert-contents", style: { padding: 5 } }, content, text && /* @__PURE__ */ React$3.createElement("div", { style: { marginBottom: 10 } }, text)),
+      /* @__PURE__ */ React$3.createElement(
+        "div",
+        {
+          className: title ? "bp3-dialog-body" : "bp3-alert-contents",
+          style: { padding: 5 }
+        },
+        content,
+        text && /* @__PURE__ */ React$3.createElement("div", { style: { marginBottom: 10 } }, text)
+      ),
       /* @__PURE__ */ React$3.createElement(
         DialogFooter,
         {
@@ -89440,23 +89443,27 @@ class AlertWrapper extends React$3.Component {
             additionalButtons: thirdButtonText || fourthButtonText ? /* @__PURE__ */ React$3.createElement(React$3.Fragment, null, !!fourthButtonText && /* @__PURE__ */ React$3.createElement(
               core$5.Button,
               {
+                className: (!fourthButtonNotMinimal ? core$5.Classes.MINIMAL : "") + " " + fourthButtonClassName,
                 intent: fourthButtonIntent,
                 text: fourthButtonText,
-                onClick: () => {
-                  doClose("fourthButtonClicked");
-                }
+                onClick: handleSubmit ? handleSubmit(
+                  (v) => doClose({ ...v, fourthButtonClicked: true })
+                ) : () => doClose("fourthButtonClicked")
               }
             ), !!thirdButtonText && /* @__PURE__ */ React$3.createElement(
               core$5.Button,
               {
+                className: (!thirdButtonNotMinimal ? core$5.Classes.MINIMAL : "") + " " + thirdButtonClassName,
                 intent: thirdButtonIntent,
                 text: thirdButtonText,
-                onClick: () => {
+                onClick: handleSubmit ? handleSubmit(
+                  (v) => doClose({ ...v, thirdButtonClicked: true })
+                ) : () => {
                   doClose("thirdButtonClicked");
                 }
               }
             )) : void 0,
-            containerClassname: "bp3-alert-footer",
+            containerClassname: title ? "" : "bp3-alert-footer",
             backText: noCancelButton ? "" : cancelButtonText,
             text: confirmButtonText,
             intent
@@ -113787,13 +113794,13 @@ function coerceLocation({
     messages.push(
       "Invalid annotation start: " + location.start + " detected for " + location.name + " and set to size: " + size
     );
-    location.start = size - (isProtein ? 3 : 1);
+    location.start = Math.max(0, size - (isProtein ? 3 : 1));
   }
   if (location.end < 0 || !(location.end <= size - 1) || location.end > size - 1) {
     messages.push(
       "Invalid annotation end:  " + location.end + " detected for " + location.name + " and set to seq size: " + size
     );
-    location.end = size - 1;
+    location.end = Math.max(0, size - 1);
   }
   if (location.start > location.end && circular === false) {
     messages.push(
@@ -161163,7 +161170,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 
 const name = "@teselagen/ove";
-const version = "0.3.18";
+const version = "0.3.20";
 const main = "./src/index.js";
 const exports$1 = {
 	".": {
@@ -162631,7 +162638,7 @@ const editCommandDefs = {
   },
   useGtgAndCtgAsStartCodons: {
     isHidden: isProtein,
-    name: "Use GTG And CTG As Start Codons",
+    name: (props) => isRna(props) ? "Use GUG And CUG As Start Codons" : "Use GTG And CTG As Start Codons",
     isActive: (props) => props.useAdditionalOrfStartCodons,
     handler: (props) => props.useAdditionalOrfStartCodonsToggle()
   },

package/index.es.js

@@ -30138,6 +30138,8 @@ function DialogFooter({
   style,
   onClick = lodashExports.noop,
   secondaryAction,
+  secondaryDisabled,
+  secondaryNotMinimal,
   intent = Intent.PRIMARY,
   secondaryIntent,
   backText = "Back",
@@ -30169,7 +30171,8 @@ function DialogFooter({
       Button,
       {
         intent: secondaryIntent,
-        className: Classes.MINIMAL + " " + secondaryClassName,
+        disabled: secondaryDisabled,
+        className: (!secondaryNotMinimal ? Classes.MINIMAL : "") + " " + secondaryClassName,
         text: secondaryText,
         onClick: secondaryAction || hideModal || function() {
           try {
@@ -30405,20 +30408,12 @@ var _cof = function (it) {
   return toString$6.call(it).slice(8, -1);
 };
 
-var _iobject;
-var hasRequired_iobject;
-
-function require_iobject () {
-	if (hasRequired_iobject) return _iobject;
-	hasRequired_iobject = 1;
-	// fallback for non-array-like ES3 and non-enumerable old V8 strings
-	var cof = _cof;
-	// eslint-disable-next-line no-prototype-builtins
-	_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
-	  return cof(it) == 'String' ? it.split('') : Object(it);
-	};
-	return _iobject;
-}
+// fallback for non-array-like ES3 and non-enumerable old V8 strings
+var cof$2 = _cof;
+// eslint-disable-next-line no-prototype-builtins
+var _iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
+  return cof$2(it) == 'String' ? it.split('') : Object(it);
+};
 
 // 7.2.1 RequireObjectCoercible(argument)
 var _defined = function (it) {
@@ -30427,7 +30422,7 @@ var _defined = function (it) {
 };
 
 // to indexed object, toObject with fallback for non-array-like ES3 strings
-var IObject = require_iobject();
+var IObject = _iobject;
 var defined$2 = _defined;
 var _toIobject = function (it) {
   return IObject(defined$2(it));
@@ -30547,14 +30542,7 @@ _objectGops.f = Object.getOwnPropertySymbols;
 
 var _objectPie = {};
 
-var hasRequired_objectPie;
-
-function require_objectPie () {
-	if (hasRequired_objectPie) return _objectPie;
-	hasRequired_objectPie = 1;
-	_objectPie.f = {}.propertyIsEnumerable;
-	return _objectPie;
-}
+_objectPie.f = {}.propertyIsEnumerable;
 
 // 7.1.13 ToObject(argument)
 var defined$1 = _defined;
@@ -30572,9 +30560,9 @@ function require_objectAssign () {
 	var DESCRIPTORS = _descriptors;
 	var getKeys = _objectKeys;
 	var gOPS = _objectGops;
-	var pIE = require_objectPie();
+	var pIE = _objectPie;
 	var toObject = _toObject;
-	var IObject = require_iobject();
+	var IObject = _iobject;
 	var $assign = Object.assign;
 
 	// should work with symbols and should have deterministic property order (V8 bug)
@@ -31287,7 +31275,7 @@ var _wksDefine = function (name) {
 // all enumerable object keys, includes symbols
 var getKeys = _objectKeys;
 var gOPS$1 = _objectGops;
-var pIE$1 = require_objectPie();
+var pIE$1 = _objectPie;
 var _enumKeys = function (it) {
   var result = getKeys(it);
   var getSymbols = gOPS$1.f;
@@ -31340,7 +31328,7 @@ _objectGopnExt.f = function getOwnPropertyNames(it) {
 
 var _objectGopd = {};
 
-var pIE = require_objectPie();
+var pIE = _objectPie;
 var createDesc$1 = _propertyDesc;
 var toIObject$1 = _toIobject;
 var toPrimitive$1 = _toPrimitive$1;
@@ -31508,7 +31496,7 @@ if (!USE_NATIVE) {
   $GOPD.f = $getOwnPropertyDescriptor;
   $DP.f = $defineProperty$1;
   _objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
-  require_objectPie().f = $propertyIsEnumerable;
+  _objectPie.f = $propertyIsEnumerable;
   $GOPS.f = $getOwnPropertySymbols;
 
   if (DESCRIPTORS && !_library) {
@@ -66116,7 +66104,7 @@ class TgSelect extends React__default$1.Component {
       if (isTagSelect && item.value && item.value.includes && item.value.includes(":")) {
         const topLevelId = item.value.split(":")[0];
         valArray = valArray.filter((val) => {
-          if (val.value && val.value.includes && val.value.includes(":")) {
+          if (val?.value && val.value.includes && val.value.includes(":")) {
             const valId = val.value.split(":")[0];
             if (valId === topLevelId) {
               return false;
@@ -66204,7 +66192,7 @@ class TgSelect extends React__default$1.Component {
   getTagProps = (label) => {
     const { multi, value = [], disabled: _disabled } = this.props;
     const val = Array.isArray(value) ? value : [value];
-    const matchingVal = val.find((op) => op.label === label);
+    const matchingVal = val.find((op) => op?.label === label);
     const disabled = _disabled || matchingVal && matchingVal.disabled;
     const className = matchingVal && matchingVal.className;
     return {
@@ -83343,7 +83331,7 @@ const renderReactSelect = (props) => {
     }
   } else if (Array.isArray(value)) {
     valueToUse = value.map((val) => {
-      if (val.userCreated) {
+      if (val?.userCreated) {
         return {
           label: val.value,
           value: val
@@ -83370,10 +83358,10 @@ const renderReactSelect = (props) => {
       let valToPass;
       if (Array.isArray(valOrVals)) {
         valToPass = valOrVals.map(function(val) {
-          if (val.userCreated) {
+          if (val?.userCreated) {
             return val;
           }
-          return val.value;
+          return val?.value;
         });
       } else if (valOrVals) {
         if (valOrVals.userCreated) {
@@ -89372,16 +89360,22 @@ class AlertWrapper extends Component {
   state = { isOpen: true };
   render() {
     const {
+      title,
       handleClose,
       text,
       resolve,
       noCancelButton,
       content,
       className,
+      thirdButtonNotMinimal,
+      thirdButtonClassName,
       thirdButtonText,
       thirdButtonIntent,
+      fourthButtonNotMinimal,
+      fourthButtonClassName,
       fourthButtonText,
       fourthButtonIntent,
+      handleSubmit,
       canEscapeKeyCancel,
       confirmButtonText = "OK",
       cancelButtonText = "Cancel",
@@ -89396,19 +89390,28 @@ class AlertWrapper extends Component {
     return /* @__PURE__ */ React__default$1.createElement(
       Dialog,
       {
-        className: `bp3-alert ${className || ""}`,
+        title,
+        className: (title ? "" : "bp3-alert") + ` ${className || ""}`,
         isOpen: this.state.isOpen,
         intent,
         cancelButtonText,
         onCancel: cancelButtonText ? () => doClose(false) : void 0,
-        onConfirm: () => doClose(true),
+        onConfirm: handleSubmit ? handleSubmit((v) => doClose(v)) : () => doClose(true),
         ...rest,
         ...noCancelButton && {
           onCancel: void 0,
           cancelButtonText: void 0
         }
       },
-      /* @__PURE__ */ React__default$1.createElement("div", { className: "bp3-alert-contents", style: { padding: 5 } }, content, text && /* @__PURE__ */ React__default$1.createElement("div", { style: { marginBottom: 10 } }, text)),
+      /* @__PURE__ */ React__default$1.createElement(
+        "div",
+        {
+          className: title ? "bp3-dialog-body" : "bp3-alert-contents",
+          style: { padding: 5 }
+        },
+        content,
+        text && /* @__PURE__ */ React__default$1.createElement("div", { style: { marginBottom: 10 } }, text)
+      ),
       /* @__PURE__ */ React__default$1.createElement(
         DialogFooter,
         {
@@ -89419,23 +89422,27 @@ class AlertWrapper extends Component {
             additionalButtons: thirdButtonText || fourthButtonText ? /* @__PURE__ */ React__default$1.createElement(React__default$1.Fragment, null, !!fourthButtonText && /* @__PURE__ */ React__default$1.createElement(
               Button,
               {
+                className: (!fourthButtonNotMinimal ? Classes.MINIMAL : "") + " " + fourthButtonClassName,
                 intent: fourthButtonIntent,
                 text: fourthButtonText,
-                onClick: () => {
-                  doClose("fourthButtonClicked");
-                }
+                onClick: handleSubmit ? handleSubmit(
+                  (v) => doClose({ ...v, fourthButtonClicked: true })
+                ) : () => doClose("fourthButtonClicked")
               }
             ), !!thirdButtonText && /* @__PURE__ */ React__default$1.createElement(
               Button,
               {
+                className: (!thirdButtonNotMinimal ? Classes.MINIMAL : "") + " " + thirdButtonClassName,
                 intent: thirdButtonIntent,
                 text: thirdButtonText,
-                onClick: () => {
+                onClick: handleSubmit ? handleSubmit(
+                  (v) => doClose({ ...v, thirdButtonClicked: true })
+                ) : () => {
                   doClose("thirdButtonClicked");
                 }
               }
             )) : void 0,
-            containerClassname: "bp3-alert-footer",
+            containerClassname: title ? "" : "bp3-alert-footer",
             backText: noCancelButton ? "" : cancelButtonText,
             text: confirmButtonText,
             intent
@@ -113766,13 +113773,13 @@ function coerceLocation({
     messages.push(
       "Invalid annotation start: " + location.start + " detected for " + location.name + " and set to size: " + size
     );
-    location.start = size - (isProtein ? 3 : 1);
+    location.start = Math.max(0, size - (isProtein ? 3 : 1));
   }
   if (location.end < 0 || !(location.end <= size - 1) || location.end > size - 1) {
     messages.push(
       "Invalid annotation end:  " + location.end + " detected for " + location.name + " and set to seq size: " + size
     );
-    location.end = size - 1;
+    location.end = Math.max(0, size - 1);
   }
   if (location.start > location.end && circular === false) {
     messages.push(
@@ -161142,7 +161149,7 @@ function showFileDialog({ multiple = false, onSelect }) {
 }
 
 const name = "@teselagen/ove";
-const version = "0.3.18";
+const version = "0.3.20";
 const main = "./src/index.js";
 const exports$1 = {
 	".": {
@@ -162610,7 +162617,7 @@ const editCommandDefs = {
   },
   useGtgAndCtgAsStartCodons: {
     isHidden: isProtein,
-    name: "Use GTG And CTG As Start Codons",
+    name: (props) => isRna(props) ? "Use GUG And CUG As Start Codons" : "Use GTG And CTG As Start Codons",
     isActive: (props) => props.useAdditionalOrfStartCodons,
     handler: (props) => props.useAdditionalOrfStartCodonsToggle()
   },

package/index.umd.js

@@ -23998,7 +23998,7 @@
   var ownKeys$9 = typeof Reflect !== "undefined" && Reflect.ownKeys ? Reflect.ownKeys : hasGetOwnPropertySymbols ? function (obj) {
     return Object.getOwnPropertyNames(obj).concat(Object.getOwnPropertySymbols(obj));
   } : /* istanbul ignore next */Object.getOwnPropertyNames;
-  function toPrimitive$3(value) {
+  function toPrimitive$2(value) {
     return value === null ? null : typeof value === "object" ? "" + value : value;
   }
   function hasProp(target, prop) {
@@ -24927,7 +24927,7 @@
       return this.name_ + "[" + this.value_ + "]";
     };
     _proto.valueOf = function valueOf() {
-      return toPrimitive$3(this.get());
+      return toPrimitive$2(this.get());
     };
     _proto[_Symbol$toPrimitive] = function () {
       return this.valueOf();
@@ -25155,7 +25155,7 @@
       return this.name_ + "[" + this.derivation.toString() + "]";
     };
     _proto.valueOf = function valueOf() {
-      return toPrimitive$3(this.get());
+      return toPrimitive$2(this.get());
     };
     _proto[_Symbol$toPrimitive$1] = function () {
       return this.valueOf();
@@ -56903,6 +56903,8 @@
     style,
     onClick = lodashExports.noop,
     secondaryAction,
+    secondaryDisabled,
+    secondaryNotMinimal,
     intent = Intent.PRIMARY,
     secondaryIntent,
     backText = "Back",
@@ -56934,7 +56936,8 @@
         Button,
         {
           intent: secondaryIntent,
-          className: MINIMAL + " " + secondaryClassName,
+          disabled: secondaryDisabled,
+          className: (!secondaryNotMinimal ? MINIMAL : "") + " " + secondaryClassName,
           text: secondaryText,
           onClick: secondaryAction || hideModal || function() {
             try {
@@ -57023,10 +57026,18 @@
     }
   };
 
-  // Thank's IE8 for his funny defineProperty
-  var _descriptors = !_fails(function () {
-    return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
-  });
+  var _descriptors;
+  var hasRequired_descriptors;
+
+  function require_descriptors () {
+  	if (hasRequired_descriptors) return _descriptors;
+  	hasRequired_descriptors = 1;
+  	// Thank's IE8 for his funny defineProperty
+  	_descriptors = !_fails(function () {
+  	  return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
+  	});
+  	return _descriptors;
+  }
 
   var _domCreate;
   var hasRequired_domCreate;
@@ -57044,9 +57055,17 @@
   	return _domCreate;
   }
 
-  var _ie8DomDefine = !_descriptors && !_fails(function () {
-    return Object.defineProperty(require_domCreate()('div'), 'a', { get: function () { return 7; } }).a != 7;
-  });
+  var _ie8DomDefine;
+  var hasRequired_ie8DomDefine;
+
+  function require_ie8DomDefine () {
+  	if (hasRequired_ie8DomDefine) return _ie8DomDefine;
+  	hasRequired_ie8DomDefine = 1;
+  	_ie8DomDefine = !require_descriptors() && !_fails(function () {
+  	  return Object.defineProperty(require_domCreate()('div'), 'a', { get: function () { return 7; } }).a != 7;
+  	});
+  	return _ie8DomDefine;
+  }
 
   // 7.1.1 ToPrimitive(input [, PreferredType])
   var isObject$6 = _isObject;
@@ -57061,22 +57080,29 @@
     throw TypeError("Can't convert object to primitive value");
   };
 
-  var anObject$5 = _anObject;
-  var IE8_DOM_DEFINE$1 = _ie8DomDefine;
-  var toPrimitive$2 = _toPrimitive$1;
-  var dP$3 = Object.defineProperty;
+  var hasRequired_objectDp;
 
-  _objectDp.f = _descriptors ? Object.defineProperty : function defineProperty(O, P, Attributes) {
-    anObject$5(O);
-    P = toPrimitive$2(P, true);
-    anObject$5(Attributes);
-    if (IE8_DOM_DEFINE$1) try {
-      return dP$3(O, P, Attributes);
-    } catch (e) { /* empty */ }
-    if ('get' in Attributes || 'set' in Attributes) throw TypeError('Accessors not supported!');
-    if ('value' in Attributes) O[P] = Attributes.value;
-    return O;
-  };
+  function require_objectDp () {
+  	if (hasRequired_objectDp) return _objectDp;
+  	hasRequired_objectDp = 1;
+  	var anObject = _anObject;
+  	var IE8_DOM_DEFINE = require_ie8DomDefine();
+  	var toPrimitive = _toPrimitive$1;
+  	var dP = Object.defineProperty;
+
+  	_objectDp.f = require_descriptors() ? Object.defineProperty : function defineProperty(O, P, Attributes) {
+  	  anObject(O);
+  	  P = toPrimitive(P, true);
+  	  anObject(Attributes);
+  	  if (IE8_DOM_DEFINE) try {
+  	    return dP(O, P, Attributes);
+  	  } catch (e) { /* empty */ }
+  	  if ('get' in Attributes || 'set' in Attributes) throw TypeError('Accessors not supported!');
+  	  if ('value' in Attributes) O[P] = Attributes.value;
+  	  return O;
+  	};
+  	return _objectDp;
+  }
 
   var _propertyDesc = function (bitmap, value) {
     return {
@@ -57087,9 +57113,9 @@
     };
   };
 
-  var dP$2 = _objectDp;
+  var dP$2 = require_objectDp();
   var createDesc$3 = _propertyDesc;
-  var _hide = _descriptors ? function (object, key, value) {
+  var _hide = require_descriptors() ? function (object, key, value) {
     return dP$2.f(object, key, createDesc$3(1, value));
   } : function (object, key, value) {
     object[key] = value;
@@ -57170,20 +57196,12 @@
     return toString$4.call(it).slice(8, -1);
   };
 
-  var _iobject;
-  var hasRequired_iobject;
-
-  function require_iobject () {
-  	if (hasRequired_iobject) return _iobject;
-  	hasRequired_iobject = 1;
-  	// fallback for non-array-like ES3 and non-enumerable old V8 strings
-  	var cof = _cof;
-  	// eslint-disable-next-line no-prototype-builtins
-  	_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
-  	  return cof(it) == 'String' ? it.split('') : Object(it);
-  	};
-  	return _iobject;
-  }
+  // fallback for non-array-like ES3 and non-enumerable old V8 strings
+  var cof$2 = _cof;
+  // eslint-disable-next-line no-prototype-builtins
+  var _iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
+    return cof$2(it) == 'String' ? it.split('') : Object(it);
+  };
 
   // 7.2.1 RequireObjectCoercible(argument)
   var _defined = function (it) {
@@ -57192,7 +57210,7 @@
   };
 
   // to indexed object, toObject with fallback for non-array-like ES3 strings
-  var IObject = require_iobject();
+  var IObject = _iobject;
   var defined$2 = _defined;
   var _toIobject = function (it) {
     return IObject(defined$2(it));
@@ -57312,14 +57330,7 @@
 
   var _objectPie = {};
 
-  var hasRequired_objectPie;
-
-  function require_objectPie () {
-  	if (hasRequired_objectPie) return _objectPie;
-  	hasRequired_objectPie = 1;
-  	_objectPie.f = {}.propertyIsEnumerable;
-  	return _objectPie;
-  }
+  _objectPie.f = {}.propertyIsEnumerable;
 
   // 7.1.13 ToObject(argument)
   var defined$1 = _defined;
@@ -57334,12 +57345,12 @@
   	if (hasRequired_objectAssign) return _objectAssign;
   	hasRequired_objectAssign = 1;
   	// 19.1.2.1 Object.assign(target, source, ...)
-  	var DESCRIPTORS = _descriptors;
+  	var DESCRIPTORS = require_descriptors();
   	var getKeys = _objectKeys;
   	var gOPS = _objectGops;
-  	var pIE = require_objectPie();
+  	var pIE = _objectPie;
   	var toObject = _toObject;
-  	var IObject = require_iobject();
+  	var IObject = _iobject;
   	var $assign = Object.assign;
 
   	// should work with symbols and should have deterministic property order (V8 bug)
@@ -57410,11 +57421,11 @@
 
   var _redefine = _hide;
 
-  var dP$1 = _objectDp;
+  var dP$1 = require_objectDp();
   var anObject$4 = _anObject;
   var getKeys$1 = _objectKeys;
 
-  var _objectDps = _descriptors ? Object.defineProperties : function defineProperties(O, Properties) {
+  var _objectDps = require_descriptors() ? Object.defineProperties : function defineProperties(O, Properties) {
     anObject$4(O);
     var keys = getKeys$1(Properties);
     var length = keys.length;
@@ -57493,7 +57504,7 @@
 
   var _wksExports = _wks.exports;
 
-  var def = _objectDp.f;
+  var def = require_objectDp().f;
   var has$b = _has;
   var TAG$1 = _wksExports('toStringTag');
 
@@ -57807,7 +57818,7 @@
     return it !== undefined && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
   };
 
-  var $defineProperty$1 = _objectDp;
+  var $defineProperty$1 = require_objectDp();
   var createDesc$2 = _propertyDesc;
 
   var _createProperty = function (object, index, value) {
@@ -57940,7 +57951,7 @@
 
   var $export$3 = _export;
   // 19.1.2.4 / 15.2.3.6 Object.defineProperty(O, P, Attributes)
-  $export$3($export$3.S + $export$3.F * !_descriptors, 'Object', { defineProperty: _objectDp.f });
+  $export$3($export$3.S + $export$3.F * !require_descriptors(), 'Object', { defineProperty: require_objectDp().f });
 
   var $Object$1 = _coreExports.Object;
   var defineProperty$6 = function defineProperty(it, key, desc) {
@@ -57988,7 +57999,7 @@
   var META$1 = _uid('meta');
   var isObject$5 = _isObject;
   var has$9 = _has;
-  var setDesc = _objectDp.f;
+  var setDesc = require_objectDp().f;
   var id$1 = 0;
   var isExtensible = Object.isExtensible || function () {
     return true;
@@ -58043,7 +58054,7 @@
 
   var core = _coreExports;
   var wksExt$1 = _wksExt;
-  var defineProperty$4 = _objectDp.f;
+  var defineProperty$4 = require_objectDp().f;
   var _wksDefine = function (name) {
     var $Symbol = core.Symbol || (core.Symbol = {} );
     if (name.charAt(0) != '_' && !(name in $Symbol)) defineProperty$4($Symbol, name, { value: wksExt$1.f(name) });
@@ -58052,7 +58063,7 @@
   // all enumerable object keys, includes symbols
   var getKeys = _objectKeys;
   var gOPS$1 = _objectGops;
-  var pIE$1 = require_objectPie();
+  var pIE$1 = _objectPie;
   var _enumKeys = function (it) {
     var result = getKeys(it);
     var getSymbols = gOPS$1.f;
@@ -58105,15 +58116,15 @@
 
   var _objectGopd = {};
 
-  var pIE = require_objectPie();
+  var pIE = _objectPie;
   var createDesc$1 = _propertyDesc;
   var toIObject$1 = _toIobject;
   var toPrimitive$1 = _toPrimitive$1;
   var has$8 = _has;
-  var IE8_DOM_DEFINE = _ie8DomDefine;
+  var IE8_DOM_DEFINE = require_ie8DomDefine();
   var gOPD$2 = Object.getOwnPropertyDescriptor;
 
-  _objectGopd.f = _descriptors ? gOPD$2 : function getOwnPropertyDescriptor(O, P) {
+  _objectGopd.f = require_descriptors() ? gOPD$2 : function getOwnPropertyDescriptor(O, P) {
     O = toIObject$1(O);
     P = toPrimitive$1(P, true);
     if (IE8_DOM_DEFINE) try {
@@ -58125,7 +58136,7 @@
   // ECMAScript 6 symbols shim
   var global$1 = _globalExports;
   var has$7 = _has;
-  var DESCRIPTORS = _descriptors;
+  var DESCRIPTORS = require_descriptors();
   var $export$2 = _export;
   var redefine = _redefine;
   var META = _metaExports.KEY;
@@ -58148,7 +58159,7 @@
   var gOPNExt = _objectGopnExt;
   var $GOPD = _objectGopd;
   var $GOPS = _objectGops;
-  var $DP = _objectDp;
+  var $DP = require_objectDp();
   var $keys$1 = _objectKeys;
   var gOPD$1 = $GOPD.f;
   var dP = $DP.f;
@@ -58273,7 +58284,7 @@
     $GOPD.f = $getOwnPropertyDescriptor;
     $DP.f = $defineProperty;
     _objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
-    require_objectPie().f = $propertyIsEnumerable;
+    _objectPie.f = $propertyIsEnumerable;
     $GOPS.f = $getOwnPropertySymbols;
 
     if (DESCRIPTORS && !_library) {
@@ -90406,7 +90417,7 @@
         if (isTagSelect && item.value && item.value.includes && item.value.includes(":")) {
           const topLevelId = item.value.split(":")[0];
           valArray = valArray.filter((val) => {
-            if (val.value && val.value.includes && val.value.includes(":")) {
+            if (val?.value && val.value.includes && val.value.includes(":")) {
               const valId = val.value.split(":")[0];
               if (valId === topLevelId) {
                 return false;
@@ -90494,7 +90505,7 @@
     getTagProps = (label) => {
       const { multi, value = [], disabled: _disabled } = this.props;
       const val = Array.isArray(value) ? value : [value];
-      const matchingVal = val.find((op) => op.label === label);
+      const matchingVal = val.find((op) => op?.label === label);
       const disabled = _disabled || matchingVal && matchingVal.disabled;
       const className = matchingVal && matchingVal.className;
       return {
@@ -111742,7 +111753,7 @@
       }
     } else if (Array.isArray(value)) {
       valueToUse = value.map((val) => {
-        if (val.userCreated) {
+        if (val?.userCreated) {
           return {
             label: val.value,
             value: val
@@ -111769,10 +111780,10 @@
         let valToPass;
         if (Array.isArray(valOrVals)) {
           valToPass = valOrVals.map(function(val) {
-            if (val.userCreated) {
+            if (val?.userCreated) {
               return val;
             }
-            return val.value;
+            return val?.value;
           });
         } else if (valOrVals) {
           if (valOrVals.userCreated) {
@@ -117760,16 +117771,22 @@
     state = { isOpen: true };
     render() {
       const {
+        title,
         handleClose,
         text,
         resolve,
         noCancelButton,
         content,
         className,
+        thirdButtonNotMinimal,
+        thirdButtonClassName,
         thirdButtonText,
         thirdButtonIntent,
+        fourthButtonNotMinimal,
+        fourthButtonClassName,
         fourthButtonText,
         fourthButtonIntent,
+        handleSubmit,
         canEscapeKeyCancel,
         confirmButtonText = "OK",
         cancelButtonText = "Cancel",
@@ -117784,19 +117801,28 @@
       return /* @__PURE__ */ React$3.createElement(
         Dialog,
         {
-          className: `bp3-alert ${className || ""}`,
+          title,
+          className: (title ? "" : "bp3-alert") + ` ${className || ""}`,
           isOpen: this.state.isOpen,
           intent,
           cancelButtonText,
           onCancel: cancelButtonText ? () => doClose(false) : void 0,
-          onConfirm: () => doClose(true),
+          onConfirm: handleSubmit ? handleSubmit((v) => doClose(v)) : () => doClose(true),
           ...rest,
           ...noCancelButton && {
             onCancel: void 0,
             cancelButtonText: void 0
           }
         },
-        /* @__PURE__ */ React$3.createElement("div", { className: "bp3-alert-contents", style: { padding: 5 } }, content, text && /* @__PURE__ */ React$3.createElement("div", { style: { marginBottom: 10 } }, text)),
+        /* @__PURE__ */ React$3.createElement(
+          "div",
+          {
+            className: title ? "bp3-dialog-body" : "bp3-alert-contents",
+            style: { padding: 5 }
+          },
+          content,
+          text && /* @__PURE__ */ React$3.createElement("div", { style: { marginBottom: 10 } }, text)
+        ),
         /* @__PURE__ */ React$3.createElement(
           DialogFooter,
           {
@@ -117807,23 +117833,27 @@
               additionalButtons: thirdButtonText || fourthButtonText ? /* @__PURE__ */ React$3.createElement(React$3.Fragment, null, !!fourthButtonText && /* @__PURE__ */ React$3.createElement(
                 Button,
                 {
+                  className: (!fourthButtonNotMinimal ? MINIMAL : "") + " " + fourthButtonClassName,
                   intent: fourthButtonIntent,
                   text: fourthButtonText,
-                  onClick: () => {
-                    doClose("fourthButtonClicked");
-                  }
+                  onClick: handleSubmit ? handleSubmit(
+                    (v) => doClose({ ...v, fourthButtonClicked: true })
+                  ) : () => doClose("fourthButtonClicked")
                 }
               ), !!thirdButtonText && /* @__PURE__ */ React$3.createElement(
                 Button,
                 {
+                  className: (!thirdButtonNotMinimal ? MINIMAL : "") + " " + thirdButtonClassName,
                   intent: thirdButtonIntent,
                   text: thirdButtonText,
-                  onClick: () => {
+                  onClick: handleSubmit ? handleSubmit(
+                    (v) => doClose({ ...v, thirdButtonClicked: true })
+                  ) : () => {
                     doClose("thirdButtonClicked");
                   }
                 }
               )) : void 0,
-              containerClassname: "bp3-alert-footer",
+              containerClassname: title ? "" : "bp3-alert-footer",
               backText: noCancelButton ? "" : cancelButtonText,
               text: confirmButtonText,
               intent
@@ -142143,13 +142173,13 @@
       messages.push(
         "Invalid annotation start: " + location.start + " detected for " + location.name + " and set to size: " + size
       );
-      location.start = size - (isProtein ? 3 : 1);
+      location.start = Math.max(0, size - (isProtein ? 3 : 1));
     }
     if (location.end < 0 || !(location.end <= size - 1) || location.end > size - 1) {
       messages.push(
         "Invalid annotation end:  " + location.end + " detected for " + location.name + " and set to seq size: " + size
       );
-      location.end = size - 1;
+      location.end = Math.max(0, size - 1);
     }
     if (location.start > location.end && circular === false) {
       messages.push(
@@ -188747,7 +188777,7 @@ double click --> edit`}`;
   }
 
   const name = "@teselagen/ove";
-  const version = "0.3.18";
+  const version = "0.3.20";
   const main = "./src/index.js";
   const exports$1 = {
   	".": {
@@ -190215,7 +190245,7 @@ double click --> edit`}`;
     },
     useGtgAndCtgAsStartCodons: {
       isHidden: isProtein,
-      name: "Use GTG And CTG As Start Codons",
+      name: (props) => isRna(props) ? "Use GUG And CUG As Start Codons" : "Use GTG And CTG As Start Codons",
       isActive: (props) => props.useAdditionalOrfStartCodons,
       handler: (props) => props.useAdditionalOrfStartCodonsToggle()
     },

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.3.19",
+  "version": "0.3.21",
   "main": "./src/index.js",
   "exports": {
     ".": {
@@ -15,7 +15,7 @@
   "dependencies": {
     "@teselagen/sequence-utils": "0.3.7",
     "@teselagen/range-utils": "0.3.7",
-    "@teselagen/ui": "0.3.17",
+    "@teselagen/ui": "0.3.19",
     "@teselagen/file-utils": "0.3.9",
     "@teselagen/bounce-loader": "0.3.11",
     "@teselagen/bio-parsers": "0.3.8",

package/src/commands/index.js

@@ -930,7 +930,10 @@ const editCommandDefs = {
   useGtgAndCtgAsStartCodons: {
     isHidden: isProtein,
 
-    name: "Use GTG And CTG As Start Codons",
+    name: props =>
+      isRna(props)
+        ? "Use GUG And CUG As Start Codons"
+        : "Use GTG And CTG As Start Codons",
     isActive: props => props.useAdditionalOrfStartCodons,
     handler: props => props.useAdditionalOrfStartCodonsToggle()
   },