@teselagen/ove 0.3.13 → 0.3.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.js +170 -129
- package/index.mjs +170 -129
- package/index.umd.js +167 -165
- package/package.json +1 -1
- package/src/ToolBar/editTool.js +0 -1
- package/src/helperComponents/AddOrEditAnnotationDialog/index.js +9 -9
- package/src/helperComponents/PropertiesDialog/GeneralProperties.js +0 -1
- package/src/withEditorProps/index.js +29 -17
package/index.mjs
CHANGED
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@@ -30258,10 +30258,18 @@ var _fails = function (exec) {
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30258
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}
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30259
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};
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30260
30260
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30261
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-
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30262
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var
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30263
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-
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30264
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-
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30261
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+
var _descriptors;
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30262
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+
var hasRequired_descriptors;
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30263
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+
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30264
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function require_descriptors () {
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30265
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+
if (hasRequired_descriptors) return _descriptors;
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30266
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+
hasRequired_descriptors = 1;
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30267
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+
// Thank's IE8 for his funny defineProperty
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30268
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+
_descriptors = !_fails(function () {
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30269
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return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
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30270
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+
});
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30271
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+
return _descriptors;
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30272
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+
}
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30265
30273
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30266
30274
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var _domCreate;
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var hasRequired_domCreate;
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@@ -30279,7 +30287,7 @@ function require_domCreate () {
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return _domCreate;
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}
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30281
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30282
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-
var _ie8DomDefine = !
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30290
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+
var _ie8DomDefine = !require_descriptors() && !_fails(function () {
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30283
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return Object.defineProperty(require_domCreate()('div'), 'a', { get: function () { return 7; } }).a != 7;
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});
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30285
30293
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@@ -30296,17 +30304,17 @@ var _toPrimitive$1 = function (it, S) {
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throw TypeError("Can't convert object to primitive value");
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};
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-
var anObject$
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+
var anObject$3 = _anObject;
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30300
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var IE8_DOM_DEFINE$1 = _ie8DomDefine;
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var toPrimitive$2 = _toPrimitive$1;
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30302
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-
var dP$
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+
var dP$2 = Object.defineProperty;
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30303
30311
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30304
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-
_objectDp.f =
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30305
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-
anObject$
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30312
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_objectDp.f = require_descriptors() ? Object.defineProperty : function defineProperty(O, P, Attributes) {
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30313
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anObject$3(O);
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30306
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P = toPrimitive$2(P, true);
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30307
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-
anObject$
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30315
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+
anObject$3(Attributes);
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if (IE8_DOM_DEFINE$1) try {
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30309
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-
return dP$
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+
return dP$2(O, P, Attributes);
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} catch (e) { /* empty */ }
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if ('get' in Attributes || 'set' in Attributes) throw TypeError('Accessors not supported!');
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if ('value' in Attributes) O[P] = Attributes.value;
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@@ -30322,10 +30330,10 @@ var _propertyDesc = function (bitmap, value) {
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};
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};
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30325
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-
var dP$
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30333
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+
var dP$1 = _objectDp;
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var createDesc$3 = _propertyDesc;
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30327
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-
var _hide =
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30328
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-
return dP$
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30335
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+
var _hide = require_descriptors() ? function (object, key, value) {
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30336
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+
return dP$1.f(object, key, createDesc$3(1, value));
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} : function (object, key, value) {
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30330
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object[key] = value;
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return object;
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@@ -30341,7 +30349,7 @@ var core$3 = _coreExports;
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30341
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var ctx$1 = _ctx;
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30342
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var hide$3 = _hide;
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var has$e = _has;
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30344
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-
var PROTOTYPE$
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30352
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+
var PROTOTYPE$1 = 'prototype';
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var $export$8 = function (type, name, source) {
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30347
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var IS_FORCED = type & $export$8.F;
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@@ -30351,8 +30359,8 @@ var $export$8 = function (type, name, source) {
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var IS_BIND = type & $export$8.B;
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var IS_WRAP = type & $export$8.W;
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var exports = IS_GLOBAL ? core$3 : core$3[name] || (core$3[name] = {});
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30354
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-
var expProto = exports[PROTOTYPE$
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30355
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-
var target = IS_GLOBAL ? global$5 : IS_STATIC ? global$5[name] : (global$5[name] || {})[PROTOTYPE$
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30362
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+
var expProto = exports[PROTOTYPE$1];
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30363
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+
var target = IS_GLOBAL ? global$5 : IS_STATIC ? global$5[name] : (global$5[name] || {})[PROTOTYPE$1];
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var key, own, out;
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if (IS_GLOBAL) source = name;
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for (key in source) {
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@@ -30376,7 +30384,7 @@ var $export$8 = function (type, name, source) {
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30376
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} return new C(a, b, c);
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} return C.apply(this, arguments);
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};
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30379
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-
F[PROTOTYPE$
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30387
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+
F[PROTOTYPE$1] = C[PROTOTYPE$1];
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30380
30388
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return F;
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30381
30389
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// make static versions for prototype methods
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30382
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})(out) : IS_PROTO && typeof out == 'function' ? ctx$1(Function.call, out) : out;
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@@ -30405,12 +30413,20 @@ var _cof = function (it) {
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30405
30413
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return toString$6.call(it).slice(8, -1);
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};
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30408
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-
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30409
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-
var
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30410
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-
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30411
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-
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30412
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-
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30413
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-
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30416
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+
var _iobject;
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var hasRequired_iobject;
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30418
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+
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30419
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function require_iobject () {
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30420
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+
if (hasRequired_iobject) return _iobject;
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30421
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+
hasRequired_iobject = 1;
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30422
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+
// fallback for non-array-like ES3 and non-enumerable old V8 strings
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30423
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+
var cof = _cof;
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30424
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+
// eslint-disable-next-line no-prototype-builtins
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30425
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+
_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
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30426
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return cof(it) == 'String' ? it.split('') : Object(it);
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30427
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+
};
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30428
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+
return _iobject;
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30429
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+
}
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30414
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30415
30431
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// 7.2.1 RequireObjectCoercible(argument)
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30416
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var _defined = function (it) {
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@@ -30419,7 +30435,7 @@ var _defined = function (it) {
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30419
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};
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30420
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30421
30437
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// to indexed object, toObject with fallback for non-array-like ES3 strings
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30422
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-
var IObject =
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30438
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+
var IObject = require_iobject();
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30423
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var defined$2 = _defined;
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30424
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var _toIobject = function (it) {
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30425
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return IObject(defined$2(it));
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@@ -30505,14 +30521,14 @@ var _sharedKey = function (key) {
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var has$d = _has;
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var toIObject$4 = _toIobject;
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var arrayIndexOf = _arrayIncludes$1(false);
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30508
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-
var IE_PROTO$
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30524
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+
var IE_PROTO$1 = _sharedKey('IE_PROTO');
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30509
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30510
30526
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var _objectKeysInternal = function (object, names) {
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var O = toIObject$4(object);
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30512
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var i = 0;
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30513
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var result = [];
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30514
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var key;
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30515
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-
for (key in O) if (key != IE_PROTO$
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30531
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+
for (key in O) if (key != IE_PROTO$1) has$d(O, key) && result.push(key);
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30516
30532
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// Don't enum bug & hidden keys
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30517
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while (names.length > i) if (has$d(O, key = names[i++])) {
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30518
30534
|
~arrayIndexOf(result, key) || result.push(key);
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@@ -30527,10 +30543,10 @@ var _enumBugKeys = (
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30527
30543
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30528
30544
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// 19.1.2.14 / 15.2.3.14 Object.keys(O)
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30529
30545
|
var $keys$3 = _objectKeysInternal;
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30530
|
-
var enumBugKeys
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30546
|
+
var enumBugKeys = _enumBugKeys;
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30531
30547
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30532
30548
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var _objectKeys = Object.keys || function keys(O) {
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30533
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-
return $keys$3(O, enumBugKeys
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30549
|
+
return $keys$3(O, enumBugKeys);
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30534
30550
|
};
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30535
30551
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30536
30552
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var _objectGops = {};
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@@ -30554,12 +30570,12 @@ function require_objectAssign () {
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30554
30570
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if (hasRequired_objectAssign) return _objectAssign;
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30555
30571
|
hasRequired_objectAssign = 1;
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30556
30572
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// 19.1.2.1 Object.assign(target, source, ...)
|
|
30557
|
-
var DESCRIPTORS =
|
|
30573
|
+
var DESCRIPTORS = require_descriptors();
|
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30558
30574
|
var getKeys = _objectKeys;
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|
30559
30575
|
var gOPS = _objectGops;
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30560
30576
|
var pIE = _objectPie;
|
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30561
30577
|
var toObject = _toObject;
|
|
30562
|
-
var IObject =
|
|
30578
|
+
var IObject = require_iobject();
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30563
30579
|
var $assign = Object.assign;
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|
30564
30580
|
|
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30565
30581
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// should work with symbols and should have deterministic property order (V8 bug)
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@@ -30630,19 +30646,27 @@ var _iterators = {};
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30630
30646
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30631
30647
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var _redefine = _hide;
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30632
30648
|
|
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30633
|
-
var
|
|
30634
|
-
var
|
|
30635
|
-
var getKeys$1 = _objectKeys;
|
|
30649
|
+
var _objectDps;
|
|
30650
|
+
var hasRequired_objectDps;
|
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30636
30651
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30637
|
-
|
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30638
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-
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30639
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-
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30640
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-
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30641
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-
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30642
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-
|
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30643
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-
|
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30644
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-
|
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30645
|
-
|
|
30652
|
+
function require_objectDps () {
|
|
30653
|
+
if (hasRequired_objectDps) return _objectDps;
|
|
30654
|
+
hasRequired_objectDps = 1;
|
|
30655
|
+
var dP = _objectDp;
|
|
30656
|
+
var anObject = _anObject;
|
|
30657
|
+
var getKeys = _objectKeys;
|
|
30658
|
+
|
|
30659
|
+
_objectDps = require_descriptors() ? Object.defineProperties : function defineProperties(O, Properties) {
|
|
30660
|
+
anObject(O);
|
|
30661
|
+
var keys = getKeys(Properties);
|
|
30662
|
+
var length = keys.length;
|
|
30663
|
+
var i = 0;
|
|
30664
|
+
var P;
|
|
30665
|
+
while (length > i) dP.f(O, P = keys[i++], Properties[P]);
|
|
30666
|
+
return O;
|
|
30667
|
+
};
|
|
30668
|
+
return _objectDps;
|
|
30669
|
+
}
|
|
30646
30670
|
|
|
30647
30671
|
var _html;
|
|
30648
30672
|
var hasRequired_html;
|
|
@@ -30655,47 +30679,55 @@ function require_html () {
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|
|
30655
30679
|
return _html;
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30656
30680
|
}
|
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30657
30681
|
|
|
30658
|
-
|
|
30659
|
-
var
|
|
30660
|
-
var dPs = _objectDps;
|
|
30661
|
-
var enumBugKeys = _enumBugKeys;
|
|
30662
|
-
var IE_PROTO$1 = _sharedKey('IE_PROTO');
|
|
30663
|
-
var Empty = function () { /* empty */ };
|
|
30664
|
-
var PROTOTYPE$1 = 'prototype';
|
|
30682
|
+
var _objectCreate;
|
|
30683
|
+
var hasRequired_objectCreate;
|
|
30665
30684
|
|
|
30666
|
-
|
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30667
|
-
|
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30668
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-
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30669
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-
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30670
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-
|
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30671
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-
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30672
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-
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30673
|
-
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30674
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-
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30675
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-
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30676
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-
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30677
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-
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30678
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-
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30679
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-
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30680
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30681
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-
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30682
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-
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30683
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-
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30684
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-
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30685
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-
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30686
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30687
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-
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30688
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-
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30689
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-
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30690
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30691
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30692
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30693
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30694
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-
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30695
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30696
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-
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30697
|
-
|
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30698
|
-
|
|
30685
|
+
function require_objectCreate () {
|
|
30686
|
+
if (hasRequired_objectCreate) return _objectCreate;
|
|
30687
|
+
hasRequired_objectCreate = 1;
|
|
30688
|
+
// 19.1.2.2 / 15.2.3.5 Object.create(O [, Properties])
|
|
30689
|
+
var anObject = _anObject;
|
|
30690
|
+
var dPs = require_objectDps();
|
|
30691
|
+
var enumBugKeys = _enumBugKeys;
|
|
30692
|
+
var IE_PROTO = _sharedKey('IE_PROTO');
|
|
30693
|
+
var Empty = function () { /* empty */ };
|
|
30694
|
+
var PROTOTYPE = 'prototype';
|
|
30695
|
+
|
|
30696
|
+
// Create object with fake `null` prototype: use iframe Object with cleared prototype
|
|
30697
|
+
var createDict = function () {
|
|
30698
|
+
// Thrash, waste and sodomy: IE GC bug
|
|
30699
|
+
var iframe = require_domCreate()('iframe');
|
|
30700
|
+
var i = enumBugKeys.length;
|
|
30701
|
+
var lt = '<';
|
|
30702
|
+
var gt = '>';
|
|
30703
|
+
var iframeDocument;
|
|
30704
|
+
iframe.style.display = 'none';
|
|
30705
|
+
require_html().appendChild(iframe);
|
|
30706
|
+
iframe.src = 'javascript:'; // eslint-disable-line no-script-url
|
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30707
|
+
// createDict = iframe.contentWindow.Object;
|
|
30708
|
+
// html.removeChild(iframe);
|
|
30709
|
+
iframeDocument = iframe.contentWindow.document;
|
|
30710
|
+
iframeDocument.open();
|
|
30711
|
+
iframeDocument.write(lt + 'script' + gt + 'document.F=Object' + lt + '/script' + gt);
|
|
30712
|
+
iframeDocument.close();
|
|
30713
|
+
createDict = iframeDocument.F;
|
|
30714
|
+
while (i--) delete createDict[PROTOTYPE][enumBugKeys[i]];
|
|
30715
|
+
return createDict();
|
|
30716
|
+
};
|
|
30717
|
+
|
|
30718
|
+
_objectCreate = Object.create || function create(O, Properties) {
|
|
30719
|
+
var result;
|
|
30720
|
+
if (O !== null) {
|
|
30721
|
+
Empty[PROTOTYPE] = anObject(O);
|
|
30722
|
+
result = new Empty();
|
|
30723
|
+
Empty[PROTOTYPE] = null;
|
|
30724
|
+
// add "__proto__" for Object.getPrototypeOf polyfill
|
|
30725
|
+
result[IE_PROTO] = O;
|
|
30726
|
+
} else result = createDict();
|
|
30727
|
+
return Properties === undefined ? result : dPs(result, Properties);
|
|
30728
|
+
};
|
|
30729
|
+
return _objectCreate;
|
|
30730
|
+
}
|
|
30699
30731
|
|
|
30700
30732
|
var _wks = {exports: {}};
|
|
30701
30733
|
|
|
@@ -30721,7 +30753,7 @@ var _setToStringTag = function (it, tag, stat) {
|
|
|
30721
30753
|
if (it && !has$c(it = stat ? it : it.prototype, TAG$1)) def(it, TAG$1, { configurable: true, value: tag });
|
|
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30754
|
};
|
|
30723
30755
|
|
|
30724
|
-
var create$4 =
|
|
30756
|
+
var create$4 = require_objectCreate();
|
|
30725
30757
|
var descriptor = _propertyDesc;
|
|
30726
30758
|
var setToStringTag$2 = _setToStringTag;
|
|
30727
30759
|
var IteratorPrototype = {};
|
|
@@ -31160,7 +31192,7 @@ var _default$9 = function (instance, Constructor) {
|
|
|
31160
31192
|
|
|
31161
31193
|
var $export$3 = _export;
|
|
31162
31194
|
// 19.1.2.4 / 15.2.3.6 Object.defineProperty(O, P, Attributes)
|
|
31163
|
-
$export$3($export$3.S + $export$3.F * !
|
|
31195
|
+
$export$3($export$3.S + $export$3.F * !require_descriptors(), 'Object', { defineProperty: _objectDp.f });
|
|
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31196
|
|
|
31165
31197
|
var $Object$2 = _coreExports.Object;
|
|
31166
31198
|
var defineProperty$c = function defineProperty(it, key, desc) {
|
|
@@ -31333,7 +31365,7 @@ var has$9 = _has;
|
|
|
31333
31365
|
var IE8_DOM_DEFINE = _ie8DomDefine;
|
|
31334
31366
|
var gOPD$5 = Object.getOwnPropertyDescriptor;
|
|
31335
31367
|
|
|
31336
|
-
_objectGopd.f =
|
|
31368
|
+
_objectGopd.f = require_descriptors() ? gOPD$5 : function getOwnPropertyDescriptor(O, P) {
|
|
31337
31369
|
O = toIObject$1(O);
|
|
31338
31370
|
P = toPrimitive$1(P, true);
|
|
31339
31371
|
if (IE8_DOM_DEFINE) try {
|
|
@@ -31345,7 +31377,7 @@ _objectGopd.f = _descriptors ? gOPD$5 : function getOwnPropertyDescriptor(O, P)
|
|
|
31345
31377
|
// ECMAScript 6 symbols shim
|
|
31346
31378
|
var global$2 = _globalExports;
|
|
31347
31379
|
var has$8 = _has;
|
|
31348
|
-
var DESCRIPTORS =
|
|
31380
|
+
var DESCRIPTORS = require_descriptors();
|
|
31349
31381
|
var $export$2 = _export;
|
|
31350
31382
|
var redefine = _redefine;
|
|
31351
31383
|
var META = _metaExports.KEY;
|
|
@@ -31364,7 +31396,7 @@ var toObject$1 = _toObject;
|
|
|
31364
31396
|
var toIObject = _toIobject;
|
|
31365
31397
|
var toPrimitive = _toPrimitive$1;
|
|
31366
31398
|
var createDesc = _propertyDesc;
|
|
31367
|
-
var _create$1 =
|
|
31399
|
+
var _create$1 = require_objectCreate();
|
|
31368
31400
|
var gOPNExt = _objectGopnExt;
|
|
31369
31401
|
var $GOPD = _objectGopd;
|
|
31370
31402
|
var $GOPS = _objectGops;
|
|
@@ -31674,7 +31706,7 @@ var setPrototypeOf = { "default": setPrototypeOf$1, __esModule: true };
|
|
|
31674
31706
|
|
|
31675
31707
|
var $export = _export;
|
|
31676
31708
|
// 19.1.2.2 / 15.2.3.5 Object.create(O [, Properties])
|
|
31677
|
-
$export($export.S, 'Object', { create:
|
|
31709
|
+
$export($export.S, 'Object', { create: require_objectCreate() });
|
|
31678
31710
|
|
|
31679
31711
|
var $Object$1 = _coreExports.Object;
|
|
31680
31712
|
var create$3 = function create(P, D) {
|
|
@@ -106593,8 +106625,8 @@ function getOverlapsOfPotentiallyCircularRanges(rangeA, rangeB, maxRangeLength,
|
|
|
106593
106625
|
maxRangeLength
|
|
106594
106626
|
);
|
|
106595
106627
|
let overlaps = [];
|
|
106596
|
-
normalizedRangeA.forEach(function(nonCircularRangeA
|
|
106597
|
-
normalizedRangeB.forEach(function(nonCircularRangeB
|
|
106628
|
+
normalizedRangeA.forEach(function(nonCircularRangeA) {
|
|
106629
|
+
normalizedRangeB.forEach(function(nonCircularRangeB) {
|
|
106598
106630
|
const overlap = getOverlapOfNonCircularRanges(
|
|
106599
106631
|
nonCircularRangeA,
|
|
106600
106632
|
nonCircularRangeB
|
|
@@ -106606,7 +106638,7 @@ function getOverlapsOfPotentiallyCircularRanges(rangeA, rangeB, maxRangeLength,
|
|
|
106606
106638
|
});
|
|
106607
106639
|
if (joinIfPossible && normalizedRangeA.length === 2 && normalizedRangeB.length === 2 && maxRangeLength) {
|
|
106608
106640
|
const joinedOverlap = {};
|
|
106609
|
-
overlaps = lodashExports.flatMap(overlaps, (o
|
|
106641
|
+
overlaps = lodashExports.flatMap(overlaps, (o) => {
|
|
106610
106642
|
if (o.start === 0) {
|
|
106611
106643
|
joinedOverlap.end = o.end;
|
|
106612
106644
|
return [];
|
|
@@ -107096,7 +107128,7 @@ function translateRange(rangeToBeAdjusted, translateBy, rangeLength) {
|
|
|
107096
107128
|
});
|
|
107097
107129
|
}
|
|
107098
107130
|
|
|
107099
|
-
function flipRelativeRange(innerRange, outerRange, sequenceLength
|
|
107131
|
+
function flipRelativeRange(innerRange, outerRange, sequenceLength) {
|
|
107100
107132
|
const isFullyContained = isRangeWithinRange(
|
|
107101
107133
|
innerRange,
|
|
107102
107134
|
outerRange,
|
|
@@ -107108,7 +107140,7 @@ function flipRelativeRange(innerRange, outerRange, sequenceLength, options) {
|
|
|
107108
107140
|
return flipNonFullyContainedRange(innerRange, outerRange, sequenceLength);
|
|
107109
107141
|
}
|
|
107110
107142
|
}
|
|
107111
|
-
function flipNonFullyContainedRange(innerRange, outerRange, sequenceLength
|
|
107143
|
+
function flipNonFullyContainedRange(innerRange, outerRange, sequenceLength) {
|
|
107112
107144
|
const outerFullyContained = isRangeWithinRange(
|
|
107113
107145
|
outerRange,
|
|
107114
107146
|
innerRange,
|
|
@@ -107149,9 +107181,8 @@ function flipNonFullyContainedRange(innerRange, outerRange, sequenceLength, opti
|
|
|
107149
107181
|
sequenceLength
|
|
107150
107182
|
);
|
|
107151
107183
|
if (overlaps.length >= 1) {
|
|
107152
|
-
let overlapExtendsForward;
|
|
107153
107184
|
const firstOverlap = overlaps[0];
|
|
107154
|
-
overlapExtendsForward = firstOverlap.start !== outerRange.start;
|
|
107185
|
+
const overlapExtendsForward = firstOverlap.start !== outerRange.start;
|
|
107155
107186
|
const flippedTruncatedInner = flipFullyContainedRange(
|
|
107156
107187
|
firstOverlap,
|
|
107157
107188
|
outerRange,
|
|
@@ -107172,7 +107203,7 @@ function flipNonFullyContainedRange(innerRange, outerRange, sequenceLength, opti
|
|
|
107172
107203
|
}
|
|
107173
107204
|
return flippedInnerRange;
|
|
107174
107205
|
}
|
|
107175
|
-
function flipFullyContainedRange(innerRange, outerRange, sequenceLength
|
|
107206
|
+
function flipFullyContainedRange(innerRange, outerRange, sequenceLength) {
|
|
107176
107207
|
const translateBy = -outerRange.start;
|
|
107177
107208
|
const translatedOuterRange = translateRange(
|
|
107178
107209
|
outerRange,
|
|
@@ -107300,6 +107331,7 @@ function getYOffsetForPotentiallyCircularRange(range, YOffsetLevelsWithRanges, a
|
|
|
107300
107331
|
rangesAlreadyAddedToYOffset.push(range);
|
|
107301
107332
|
return true;
|
|
107302
107333
|
}
|
|
107334
|
+
return false;
|
|
107303
107335
|
});
|
|
107304
107336
|
if (!openYOffsetFound) {
|
|
107305
107337
|
yOffset = YOffsetLevelsWithRanges.length;
|
|
@@ -124003,7 +124035,6 @@ function genbankToJson(string, options = {}) {
|
|
|
124003
124035
|
}
|
|
124004
124036
|
function parseLocus(line) {
|
|
124005
124037
|
result = createInitialSequence(options);
|
|
124006
|
-
let locusName;
|
|
124007
124038
|
let circular;
|
|
124008
124039
|
let gbDivision;
|
|
124009
124040
|
let date;
|
|
@@ -124014,7 +124045,7 @@ function genbankToJson(string, options = {}) {
|
|
|
124014
124045
|
);
|
|
124015
124046
|
addMessage("Import Warning: Locus line contains no values: " + line);
|
|
124016
124047
|
}
|
|
124017
|
-
locusName = lineArr[1];
|
|
124048
|
+
const locusName = lineArr[1];
|
|
124018
124049
|
for (let i = 1; i < lineArr.length; i++) {
|
|
124019
124050
|
if (lineArr[i].match(/circular/gi)) {
|
|
124020
124051
|
circular = true;
|
|
@@ -124161,10 +124192,10 @@ function genbankToJson(string, options = {}) {
|
|
|
124161
124192
|
}
|
|
124162
124193
|
}
|
|
124163
124194
|
function parseFeatureNote(line) {
|
|
124164
|
-
let newLine
|
|
124195
|
+
let newLine;
|
|
124165
124196
|
newLine = line.trimLeft();
|
|
124166
124197
|
newLine = newLine.replace(/^\/|"$/g, "");
|
|
124167
|
-
lineArr = newLine.split(/="|=/);
|
|
124198
|
+
const lineArr = newLine.split(/="|=/);
|
|
124168
124199
|
let val = lineArr.slice(1).join("=");
|
|
124169
124200
|
if (val) {
|
|
124170
124201
|
val = val.replace(/\\/g, " ");
|
|
@@ -137632,7 +137663,6 @@ function createGenbankLocus(serSeq, options) {
|
|
|
137632
137663
|
if (serSeq.sequence.symbols) {
|
|
137633
137664
|
serSeq.sequence = serSeq.sequence.symbols.split("");
|
|
137634
137665
|
}
|
|
137635
|
-
let tmp;
|
|
137636
137666
|
let dnaType;
|
|
137637
137667
|
if (serSeq.isProtein) {
|
|
137638
137668
|
dnaType = "";
|
|
@@ -137649,7 +137679,7 @@ function createGenbankLocus(serSeq, options) {
|
|
|
137649
137679
|
line += " ";
|
|
137650
137680
|
line += StringUtil.lpad(String(serSeq.sequence.length), " ", 11);
|
|
137651
137681
|
line += serSeq.isProtein ? " aa " : " bp ";
|
|
137652
|
-
tmp = "";
|
|
137682
|
+
const tmp = "";
|
|
137653
137683
|
line += StringUtil.lpad(tmp, " ", 3);
|
|
137654
137684
|
line += StringUtil.rpad(dnaType, " ", 6);
|
|
137655
137685
|
line += " ";
|
|
@@ -142883,6 +142913,7 @@ function mapStateToProps(state, ownProps) {
|
|
|
142883
142913
|
if (!editorState) {
|
|
142884
142914
|
return editorReducer({}, {});
|
|
142885
142915
|
}
|
|
142916
|
+
const sequenceLength = selectors.sequenceLengthSelector(editorState);
|
|
142886
142917
|
const { findTool, annotationsToSupport = {} } = editorState;
|
|
142887
142918
|
const visibilities = getVisibilities(editorState);
|
|
142888
142919
|
let annotationToAdd;
|
|
@@ -142893,7 +142924,13 @@ function mapStateToProps(state, ownProps) {
|
|
|
142893
142924
|
].forEach(([n, type, annotationTypePlural]) => {
|
|
142894
142925
|
const vals = getFormValues(n)(state);
|
|
142895
142926
|
if (vals) {
|
|
142896
|
-
annotationToAdd = getAnnToAdd(
|
|
142927
|
+
annotationToAdd = getAnnToAdd(
|
|
142928
|
+
vals,
|
|
142929
|
+
n,
|
|
142930
|
+
type,
|
|
142931
|
+
annotationTypePlural,
|
|
142932
|
+
sequenceLength
|
|
142933
|
+
);
|
|
142897
142934
|
}
|
|
142898
142935
|
});
|
|
142899
142936
|
const toReturn = {
|
|
@@ -142917,7 +142954,6 @@ function mapStateToProps(state, ownProps) {
|
|
|
142917
142954
|
editorState,
|
|
142918
142955
|
ownProps.additionalEnzymes
|
|
142919
142956
|
);
|
|
142920
|
-
const sequenceLength = selectors.sequenceLengthSelector(editorState);
|
|
142921
142957
|
const { matchedSearchLayer, searchLayers, matchesTotal } = getSearchLayersAndMatch(editorState);
|
|
142922
142958
|
const annotationSearchMatches = selectors.annotationSearchSelector(editorState);
|
|
142923
142959
|
const _sequenceDataToUse = getSequenceDataToUse(
|
|
@@ -143193,21 +143229,26 @@ const getFindTool = createSelector(
|
|
|
143193
143229
|
};
|
|
143194
143230
|
}
|
|
143195
143231
|
);
|
|
143196
|
-
const getAnnToAdd = defaultMemoize(
|
|
143197
|
-
|
|
143198
|
-
|
|
143199
|
-
|
|
143200
|
-
|
|
143201
|
-
|
|
143202
|
-
|
|
143203
|
-
|
|
143204
|
-
|
|
143205
|
-
|
|
143206
|
-
|
|
143207
|
-
|
|
143232
|
+
const getAnnToAdd = defaultMemoize(
|
|
143233
|
+
(vals, n, type, annotationTypePlural, sequenceLength) => {
|
|
143234
|
+
const annToAdd = normalizeRange(
|
|
143235
|
+
{
|
|
143236
|
+
color: getFeatureToColorMap({ includeHidden: true })[vals.type || "primer_bind"],
|
|
143237
|
+
//we won't have the correct color yet so we set it here
|
|
143238
|
+
...vals,
|
|
143239
|
+
formName: n,
|
|
143240
|
+
type,
|
|
143241
|
+
annotationTypePlural,
|
|
143242
|
+
name: vals.name || "Untitled"
|
|
143243
|
+
},
|
|
143244
|
+
sequenceLength
|
|
143245
|
+
);
|
|
143246
|
+
if (!vals.useLinkedOligo) {
|
|
143247
|
+
delete annToAdd.bases;
|
|
143248
|
+
}
|
|
143249
|
+
return annToAdd;
|
|
143208
143250
|
}
|
|
143209
|
-
|
|
143210
|
-
});
|
|
143251
|
+
);
|
|
143211
143252
|
const getSeqDataWithAnnToAdd = defaultMemoize(
|
|
143212
143253
|
(seqData, ann, allowMultipleFeatureDirections) => {
|
|
143213
143254
|
if (ann) {
|
|
@@ -161118,7 +161159,7 @@ function showFileDialog({ multiple = false, onSelect }) {
|
|
|
161118
161159
|
}
|
|
161119
161160
|
|
|
161120
161161
|
const name = "@teselagen/ove";
|
|
161121
|
-
const version = "0.3.
|
|
161162
|
+
const version = "0.3.13";
|
|
161122
161163
|
const main = "./src/index.js";
|
|
161123
161164
|
const exports$1 = {
|
|
161124
161165
|
".": {
|
|
@@ -177357,30 +177398,30 @@ class AddOrEditAnnotationDialog extends React__default$1.Component {
|
|
|
177357
177398
|
formatStart = (val) => {
|
|
177358
177399
|
const { isProtein } = this.props.sequenceData || {};
|
|
177359
177400
|
if (isProtein) {
|
|
177360
|
-
return (val + 2) / 3;
|
|
177401
|
+
return lodashExports.round((val + 2) / 3);
|
|
177361
177402
|
}
|
|
177362
|
-
return val;
|
|
177403
|
+
return lodashExports.round(val);
|
|
177363
177404
|
};
|
|
177364
177405
|
formatEnd = (val) => {
|
|
177365
177406
|
const { isProtein } = this.props.sequenceData || {};
|
|
177366
177407
|
if (isProtein) {
|
|
177367
|
-
return val / 3;
|
|
177408
|
+
return lodashExports.round(val / 3);
|
|
177368
177409
|
}
|
|
177369
|
-
return val;
|
|
177410
|
+
return lodashExports.round(val);
|
|
177370
177411
|
};
|
|
177371
177412
|
parseStart = (val) => {
|
|
177372
177413
|
const { isProtein } = this.props.sequenceData || {};
|
|
177373
177414
|
if (isProtein) {
|
|
177374
|
-
return val * 3 - 2;
|
|
177415
|
+
return lodashExports.round(val * 3 - 2);
|
|
177375
177416
|
}
|
|
177376
|
-
return val;
|
|
177417
|
+
return lodashExports.round(val);
|
|
177377
177418
|
};
|
|
177378
177419
|
parseEnd = (val) => {
|
|
177379
177420
|
const { isProtein } = this.props.sequenceData || {};
|
|
177380
177421
|
if (isProtein) {
|
|
177381
|
-
return val * 3;
|
|
177422
|
+
return lodashExports.round(val * 3);
|
|
177382
177423
|
}
|
|
177383
|
-
return val;
|
|
177424
|
+
return lodashExports.round(val);
|
|
177384
177425
|
};
|
|
177385
177426
|
renderLocations = (props) => {
|
|
177386
177427
|
const { fields } = props;
|
|
@@ -184652,7 +184693,7 @@ class GeneralProperties extends React__default$1.Component {
|
|
|
184652
184693
|
{
|
|
184653
184694
|
className: "veReadOnlySelect",
|
|
184654
184695
|
disabled: !onSave || disableSetReadOnly,
|
|
184655
|
-
onChange: (val) =>
|
|
184696
|
+
onChange: (val) => handleReadOnlyChange(val === "readOnly", this.props),
|
|
184656
184697
|
value: readOnly ? "readOnly" : "editable",
|
|
184657
184698
|
options: [
|
|
184658
184699
|
{ label: "Read Only", value: "readOnly" },
|