@teselagen/ove 0.3.10 → 0.3.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.js +453 -319
- package/index.mjs +453 -319
- package/index.umd.js +397 -287
- package/package.json +2 -2
- package/src/AlignmentView/AlignmentVisibilityTool.js +1 -1
- package/src/AlignmentView/EditTrackNameDialog.js +1 -5
- package/src/AlignmentView/HorizontalPanelDragHandle.js +2 -2
- package/src/AlignmentView/Minimap.js +12 -12
- package/src/AlignmentView/PairwiseAlignmentView.js +1 -1
- package/src/AlignmentView/getGapMap.js +1 -1
- package/src/AlignmentView/getTrackFromEvent.js +1 -1
- package/src/AlignmentView/index.js +32 -37
- package/src/AutoAnnotate.js +48 -48
- package/src/CircularView/Cutsites.js +3 -3
- package/src/CircularView/Labels/index.js +7 -7
- package/src/CircularView/Labels/relaxLabels_DEPRECATED.js +5 -5
- package/src/CircularView/RotateCircularViewSlider.js +1 -1
- package/src/CircularView/SelectionLayer.js +2 -2
- package/src/CircularView/drawAnnotations.js +3 -3
- package/src/CircularView/getAngleForPositionMidpoint.js +1 -1
- package/src/CircularView/index.d.ts +11 -11
- package/src/CircularView/index.js +9 -9
- package/src/CreateAnnotationsPage.js +7 -5
- package/src/CreateCustomEnzyme/index.js +1 -5
- package/src/CutsiteFilter/AdditionalCutsiteInfoDialog.js +11 -11
- package/src/CutsiteFilter/index.js +12 -12
- package/src/DigestTool/AddLaddersDialog.js +1 -1
- package/src/DigestTool/DigestTool.js +3 -3
- package/src/DigestTool/Ladder.js +8 -8
- package/src/DigestTool/ladderDefaults.js +1 -2
- package/src/Editor/CommandHotkeyHandler.js +1 -1
- package/src/Editor/DropHandler.js +2 -2
- package/src/Editor/index.js +14 -14
- package/src/Editor/userDefinedHandlersAndOpts.js +2 -0
- package/src/FindBar/index.js +6 -6
- package/src/GlobalDialogUtils.js +6 -0
- package/src/LinearView/ZoomLinearView.js +1 -1
- package/src/LinearView/index.js +7 -7
- package/src/MenuBar/index.js +1 -1
- package/src/MenuBar/viewSubmenu.js +1 -1
- package/src/PCRTool/PCRTool.js +19 -19
- package/src/Reflex/Browser.js +4 -5
- package/src/Reflex/ReflexContainer.js +3 -3
- package/src/Reflex/ReflexElement.js +2 -2
- package/src/RowItem/Axis.js +1 -1
- package/src/RowItem/Caret/index.js +1 -1
- package/src/RowItem/Chromatograms/Chromatogram.js +3 -3
- package/src/RowItem/CutsiteSelectionLayers.js +1 -1
- package/src/RowItem/Cutsites.js +1 -1
- package/src/RowItem/Labels.js +2 -2
- package/src/RowItem/Orfs.js +2 -2
- package/src/RowItem/Sequence.js +4 -4
- package/src/RowItem/StackedAnnotations/PointedAnnotation.js +3 -3
- package/src/RowItem/StackedAnnotations/getStructuredBases.js +1 -1
- package/src/RowItem/Translations/AASliver.js +71 -75
- package/src/RowItem/Translations/index.js +1 -1
- package/src/RowItem/getCutsiteLabelHeights.js +1 -1
- package/src/RowItem/index.js +14 -8
- package/src/RowView/estimateRowHeight.js +5 -5
- package/src/RowView/index.d.ts +7 -7
- package/src/RowView/index.js +11 -12
- package/src/SimpleCircularOrLinearView.js +6 -6
- package/src/StatusBar/MeltingTemp.js +3 -3
- package/src/ToolBar/ToolbarItem.js +2 -2
- package/src/ToolBar/alignmentTool.js +9 -9
- package/src/ToolBar/editTool.js +1 -1
- package/src/ToolBar/findTool.js +2 -2
- package/src/ToolBar/importTool.js +1 -1
- package/src/ToolBar/index.js +2 -2
- package/src/ToolBar/oligoTool.js +1 -1
- package/src/ToolBar/orfTool.js +1 -6
- package/src/ToolBar/printTool.js +2 -2
- package/src/ToolBar/visibilityTool.js +1 -1
- package/src/VersionHistoryView/index.js +2 -2
- package/src/commands/index.js +236 -230
- package/src/createVectorEditor/index.js +4 -4
- package/src/fileUtils.js +18 -18
- package/src/helperComponents/AddOrEditAnnotationDialog/index.js +22 -15
- package/src/helperComponents/AddOrEditFeatureDialog/index.js +2 -2
- package/src/helperComponents/AddOrEditPartDialog/index.js +2 -2
- package/src/helperComponents/AddOrEditPrimerDialog/index.js +5 -5
- package/src/helperComponents/EnzymesDialog/index.js +17 -22
- package/src/helperComponents/GoToDialog.js +5 -1
- package/src/helperComponents/MergeFeaturesDialog/index.js +3 -3
- package/src/helperComponents/PinchHelper/PinchHelper.js +1 -1
- package/src/helperComponents/PrintDialog/index.js +4 -4
- package/src/helperComponents/PropertiesDialog/CutsiteProperties.js +3 -3
- package/src/helperComponents/PropertiesDialog/GenbankView.js +1 -1
- package/src/helperComponents/PropertiesDialog/GeneralProperties.js +5 -5
- package/src/helperComponents/PropertiesDialog/GenericAnnotationProperties.js +136 -138
- package/src/helperComponents/PropertiesDialog/OrfProperties.js +3 -3
- package/src/helperComponents/PropertiesDialog/PrimerProperties.js +1 -1
- package/src/helperComponents/PropertiesDialog/TranslationProperties.js +2 -2
- package/src/helperComponents/PropertiesDialog/index.js +3 -3
- package/src/helperComponents/RemoveDuplicates/index.js +3 -3
- package/src/helperComponents/SelectDialog.js +3 -3
- package/src/helperComponents/UncontrolledSliderWithPlusMinusBtns.js +5 -5
- package/src/helperComponents/createSimpleDialog.js +1 -1
- package/src/helperComponents/partTagSearch.js +2 -5
- package/src/helperComponents/withHover.js +3 -3
- package/src/redux/alignments.js +6 -6
- package/src/redux/annotationVisibility.js +4 -4
- package/src/redux/featureLengthsToHide.js +1 -1
- package/src/redux/frameTranslations.js +3 -3
- package/src/redux/middleware.js +2 -2
- package/src/redux/panelsShown.js +19 -19
- package/src/redux/partLengthsToHide.js +1 -1
- package/src/redux/primerLengthsToHide.js +1 -1
- package/src/redux/readOnly.js +1 -4
- package/src/redux/selectionLayer.js +1 -1
- package/src/redux/sequenceData/features.js +1 -1
- package/src/redux/sequenceData/upsertDeleteActionGenerator.js +1 -1
- package/src/redux/sequenceDataHistory.js +5 -5
- package/src/redux/toolBar.js +2 -4
- package/src/redux/utils/createMetaAction.js +2 -2
- package/src/redux/versionHistory.js +1 -2
- package/src/selectors/annotationSearchSelector.js +4 -4
- package/src/selectors/circularSelector.js +1 -1
- package/src/selectors/cutsiteLabelColorSelector.js +1 -1
- package/src/selectors/filteredCutsitesSelector.js +6 -6
- package/src/selectors/filteredFeaturesSelector.js +4 -4
- package/src/selectors/filteredPartsSelector.js +5 -5
- package/src/selectors/filteredPrimersSelector.js +3 -3
- package/src/selectors/isEnzymeFilterAndSelector.js +1 -1
- package/src/selectors/orfsSelector.js +1 -1
- package/src/selectors/restrictionEnzymesSelector.js +2 -2
- package/src/selectors/searchLayersSelector.js +7 -7
- package/src/selectors/sequenceLengthSelector.js +1 -1
- package/src/selectors/sequenceSelector.js +1 -1
- package/src/selectors/tagsToBoldSelector.js +1 -1
- package/src/selectors/translationsSelector.js +7 -7
- package/src/updateEditor.js +1 -1
- package/src/utils/PassThrough.js +1 -1
- package/src/utils/addWrappedAddons.js +1 -1
- package/src/utils/annotationTypes.js +2 -2
- package/src/utils/combineReducersDontIgnoreKeys.js +1 -1
- package/src/utils/editorUtils.js +2 -2
- package/src/utils/massageTickSpacing.js +1 -1
- package/src/utils/onlyUpdateForKeysDeep.js +1 -1
- package/src/utils/pureNoFunc.js +1 -1
- package/src/utils/shouldRerender.js +1 -1
- package/src/utils/showFileDialog.js +6 -7
- package/src/utils/updateLabelsForInViewFeatures.js +1 -1
- package/src/utils/useAnnotationLimits.js +1 -1
- package/src/withEditorInteractions/Keyboard.js +2 -3
- package/src/withEditorInteractions/createSequenceInputPopup.js +4 -4
- package/src/withEditorInteractions/index.js +93 -55
- package/src/withEditorProps/index.js +40 -37
package/index.mjs
CHANGED
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@@ -7404,7 +7404,7 @@ function getPlainObjectKeys(object) {
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var ownKeys$8 = typeof Reflect !== "undefined" && Reflect.ownKeys ? Reflect.ownKeys : hasGetOwnPropertySymbols ? function (obj) {
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return Object.getOwnPropertyNames(obj).concat(Object.getOwnPropertySymbols(obj));
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} : /* istanbul ignore next */Object.getOwnPropertyNames;
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function toPrimitive$
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function toPrimitive$2(value) {
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return value === null ? null : typeof value === "object" ? "" + value : value;
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}
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function hasProp(target, prop) {
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@@ -8333,7 +8333,7 @@ var ObservableValue = /*#__PURE__*/function (_Atom) {
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return this.name_ + "[" + this.value_ + "]";
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};
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_proto.valueOf = function valueOf() {
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return toPrimitive$
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return toPrimitive$2(this.get());
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};
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_proto[_Symbol$toPrimitive] = function () {
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return this.valueOf();
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return this.name_ + "[" + this.derivation.toString() + "]";
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};
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_proto.valueOf = function valueOf() {
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return toPrimitive$
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return toPrimitive$2(this.get());
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};
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_proto[_Symbol$toPrimitive$1] = function () {
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};
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var
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function require_descriptors () {
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if (hasRequired_descriptors) return _descriptors;
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hasRequired_descriptors = 1;
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// Thank's IE8 for his funny defineProperty
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_descriptors = !_fails(function () {
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return Object.defineProperty({}, 'a', { get: function () { return 7; } }).a != 7;
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});
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}
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hasRequired_ie8DomDefine = 1;
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30592
|
if (hasRequired_objectAssign) return _objectAssign;
|
|
30570
30593
|
hasRequired_objectAssign = 1;
|
|
30571
30594
|
// 19.1.2.1 Object.assign(target, source, ...)
|
|
30572
|
-
var DESCRIPTORS =
|
|
30595
|
+
var DESCRIPTORS = require_descriptors();
|
|
30573
30596
|
var getKeys = _objectKeys;
|
|
30574
30597
|
var gOPS = _objectGops;
|
|
30575
30598
|
var pIE = require_objectPie();
|
|
@@ -30645,27 +30668,19 @@ var _iterators = {};
|
|
|
30645
30668
|
|
|
30646
30669
|
var _redefine = _hide;
|
|
30647
30670
|
|
|
30648
|
-
var
|
|
30649
|
-
var
|
|
30650
|
-
|
|
30651
|
-
function require_objectDps () {
|
|
30652
|
-
if (hasRequired_objectDps) return _objectDps;
|
|
30653
|
-
hasRequired_objectDps = 1;
|
|
30654
|
-
var dP = _objectDp;
|
|
30655
|
-
var anObject = _anObject;
|
|
30656
|
-
var getKeys = _objectKeys;
|
|
30671
|
+
var dP$1 = require_objectDp();
|
|
30672
|
+
var anObject$4 = _anObject;
|
|
30673
|
+
var getKeys$1 = _objectKeys;
|
|
30657
30674
|
|
|
30658
|
-
|
|
30659
|
-
|
|
30660
|
-
|
|
30661
|
-
|
|
30662
|
-
|
|
30663
|
-
|
|
30664
|
-
|
|
30665
|
-
|
|
30666
|
-
|
|
30667
|
-
return _objectDps;
|
|
30668
|
-
}
|
|
30675
|
+
var _objectDps = require_descriptors() ? Object.defineProperties : function defineProperties(O, Properties) {
|
|
30676
|
+
anObject$4(O);
|
|
30677
|
+
var keys = getKeys$1(Properties);
|
|
30678
|
+
var length = keys.length;
|
|
30679
|
+
var i = 0;
|
|
30680
|
+
var P;
|
|
30681
|
+
while (length > i) dP$1.f(O, P = keys[i++], Properties[P]);
|
|
30682
|
+
return O;
|
|
30683
|
+
};
|
|
30669
30684
|
|
|
30670
30685
|
var _html;
|
|
30671
30686
|
var hasRequired_html;
|
|
@@ -30678,55 +30693,47 @@ function require_html () {
|
|
|
30678
30693
|
return _html;
|
|
30679
30694
|
}
|
|
30680
30695
|
|
|
30681
|
-
|
|
30682
|
-
var
|
|
30696
|
+
// 19.1.2.2 / 15.2.3.5 Object.create(O [, Properties])
|
|
30697
|
+
var anObject$3 = _anObject;
|
|
30698
|
+
var dPs = _objectDps;
|
|
30699
|
+
var enumBugKeys = _enumBugKeys;
|
|
30700
|
+
var IE_PROTO$1 = _sharedKey('IE_PROTO');
|
|
30701
|
+
var Empty = function () { /* empty */ };
|
|
30702
|
+
var PROTOTYPE$1 = 'prototype';
|
|
30683
30703
|
|
|
30684
|
-
|
|
30685
|
-
|
|
30686
|
-
|
|
30687
|
-
|
|
30688
|
-
|
|
30689
|
-
|
|
30690
|
-
|
|
30691
|
-
|
|
30692
|
-
|
|
30693
|
-
|
|
30694
|
-
|
|
30695
|
-
|
|
30696
|
-
|
|
30697
|
-
|
|
30698
|
-
|
|
30699
|
-
|
|
30700
|
-
|
|
30701
|
-
|
|
30702
|
-
|
|
30703
|
-
|
|
30704
|
-
|
|
30705
|
-
|
|
30706
|
-
|
|
30707
|
-
|
|
30708
|
-
|
|
30709
|
-
|
|
30710
|
-
|
|
30711
|
-
|
|
30712
|
-
|
|
30713
|
-
|
|
30714
|
-
|
|
30715
|
-
|
|
30716
|
-
|
|
30717
|
-
_objectCreate = Object.create || function create(O, Properties) {
|
|
30718
|
-
var result;
|
|
30719
|
-
if (O !== null) {
|
|
30720
|
-
Empty[PROTOTYPE] = anObject(O);
|
|
30721
|
-
result = new Empty();
|
|
30722
|
-
Empty[PROTOTYPE] = null;
|
|
30723
|
-
// add "__proto__" for Object.getPrototypeOf polyfill
|
|
30724
|
-
result[IE_PROTO] = O;
|
|
30725
|
-
} else result = createDict();
|
|
30726
|
-
return Properties === undefined ? result : dPs(result, Properties);
|
|
30727
|
-
};
|
|
30728
|
-
return _objectCreate;
|
|
30729
|
-
}
|
|
30704
|
+
// Create object with fake `null` prototype: use iframe Object with cleared prototype
|
|
30705
|
+
var createDict = function () {
|
|
30706
|
+
// Thrash, waste and sodomy: IE GC bug
|
|
30707
|
+
var iframe = require_domCreate()('iframe');
|
|
30708
|
+
var i = enumBugKeys.length;
|
|
30709
|
+
var lt = '<';
|
|
30710
|
+
var gt = '>';
|
|
30711
|
+
var iframeDocument;
|
|
30712
|
+
iframe.style.display = 'none';
|
|
30713
|
+
require_html().appendChild(iframe);
|
|
30714
|
+
iframe.src = 'javascript:'; // eslint-disable-line no-script-url
|
|
30715
|
+
// createDict = iframe.contentWindow.Object;
|
|
30716
|
+
// html.removeChild(iframe);
|
|
30717
|
+
iframeDocument = iframe.contentWindow.document;
|
|
30718
|
+
iframeDocument.open();
|
|
30719
|
+
iframeDocument.write(lt + 'script' + gt + 'document.F=Object' + lt + '/script' + gt);
|
|
30720
|
+
iframeDocument.close();
|
|
30721
|
+
createDict = iframeDocument.F;
|
|
30722
|
+
while (i--) delete createDict[PROTOTYPE$1][enumBugKeys[i]];
|
|
30723
|
+
return createDict();
|
|
30724
|
+
};
|
|
30725
|
+
|
|
30726
|
+
var _objectCreate = Object.create || function create(O, Properties) {
|
|
30727
|
+
var result;
|
|
30728
|
+
if (O !== null) {
|
|
30729
|
+
Empty[PROTOTYPE$1] = anObject$3(O);
|
|
30730
|
+
result = new Empty();
|
|
30731
|
+
Empty[PROTOTYPE$1] = null;
|
|
30732
|
+
// add "__proto__" for Object.getPrototypeOf polyfill
|
|
30733
|
+
result[IE_PROTO$1] = O;
|
|
30734
|
+
} else result = createDict();
|
|
30735
|
+
return Properties === undefined ? result : dPs(result, Properties);
|
|
30736
|
+
};
|
|
30730
30737
|
|
|
30731
30738
|
var _wks = {exports: {}};
|
|
30732
30739
|
|
|
@@ -30744,7 +30751,7 @@ $exports.store = store$2;
|
|
|
30744
30751
|
|
|
30745
30752
|
var _wksExports = _wks.exports;
|
|
30746
30753
|
|
|
30747
|
-
var def =
|
|
30754
|
+
var def = require_objectDp().f;
|
|
30748
30755
|
var has$c = _has;
|
|
30749
30756
|
var TAG$1 = _wksExports('toStringTag');
|
|
30750
30757
|
|
|
@@ -30752,7 +30759,7 @@ var _setToStringTag = function (it, tag, stat) {
|
|
|
30752
30759
|
if (it && !has$c(it = stat ? it : it.prototype, TAG$1)) def(it, TAG$1, { configurable: true, value: tag });
|
|
30753
30760
|
};
|
|
30754
30761
|
|
|
30755
|
-
var create$4 =
|
|
30762
|
+
var create$4 = _objectCreate;
|
|
30756
30763
|
var descriptor = _propertyDesc;
|
|
30757
30764
|
var setToStringTag$2 = _setToStringTag;
|
|
30758
30765
|
var IteratorPrototype = {};
|
|
@@ -31058,7 +31065,7 @@ var _isArrayIter = function (it) {
|
|
|
31058
31065
|
return it !== undefined && (Iterators.Array === it || ArrayProto[ITERATOR] === it);
|
|
31059
31066
|
};
|
|
31060
31067
|
|
|
31061
|
-
var $defineProperty$2 =
|
|
31068
|
+
var $defineProperty$2 = require_objectDp();
|
|
31062
31069
|
var createDesc$2 = _propertyDesc;
|
|
31063
31070
|
|
|
31064
31071
|
var _createProperty = function (object, index, value) {
|
|
@@ -31191,7 +31198,7 @@ var _default$9 = function (instance, Constructor) {
|
|
|
31191
31198
|
|
|
31192
31199
|
var $export$3 = _export;
|
|
31193
31200
|
// 19.1.2.4 / 15.2.3.6 Object.defineProperty(O, P, Attributes)
|
|
31194
|
-
$export$3($export$3.S + $export$3.F * !
|
|
31201
|
+
$export$3($export$3.S + $export$3.F * !require_descriptors(), 'Object', { defineProperty: require_objectDp().f });
|
|
31195
31202
|
|
|
31196
31203
|
var $Object$2 = _coreExports.Object;
|
|
31197
31204
|
var defineProperty$c = function defineProperty(it, key, desc) {
|
|
@@ -31239,7 +31246,7 @@ var _meta = {exports: {}};
|
|
|
31239
31246
|
var META$1 = _uid('meta');
|
|
31240
31247
|
var isObject$c = _isObject;
|
|
31241
31248
|
var has$a = _has;
|
|
31242
|
-
var setDesc =
|
|
31249
|
+
var setDesc = require_objectDp().f;
|
|
31243
31250
|
var id$1 = 0;
|
|
31244
31251
|
var isExtensible = Object.isExtensible || function () {
|
|
31245
31252
|
return true;
|
|
@@ -31294,7 +31301,7 @@ var _metaExports = _meta.exports;
|
|
|
31294
31301
|
|
|
31295
31302
|
var core = _coreExports;
|
|
31296
31303
|
var wksExt$1 = _wksExt;
|
|
31297
|
-
var defineProperty$a =
|
|
31304
|
+
var defineProperty$a = require_objectDp().f;
|
|
31298
31305
|
var _wksDefine = function (name) {
|
|
31299
31306
|
var $Symbol = core.Symbol || (core.Symbol = {} );
|
|
31300
31307
|
if (name.charAt(0) != '_' && !(name in $Symbol)) defineProperty$a($Symbol, name, { value: wksExt$1.f(name) });
|
|
@@ -31326,24 +31333,17 @@ var _objectGopnExt = {};
|
|
|
31326
31333
|
|
|
31327
31334
|
var _objectGopn = {};
|
|
31328
31335
|
|
|
31329
|
-
|
|
31330
|
-
|
|
31331
|
-
|
|
31332
|
-
if (hasRequired_objectGopn) return _objectGopn;
|
|
31333
|
-
hasRequired_objectGopn = 1;
|
|
31334
|
-
// 19.1.2.7 / 15.2.3.4 Object.getOwnPropertyNames(O)
|
|
31335
|
-
var $keys = _objectKeysInternal;
|
|
31336
|
-
var hiddenKeys = _enumBugKeys.concat('length', 'prototype');
|
|
31336
|
+
// 19.1.2.7 / 15.2.3.4 Object.getOwnPropertyNames(O)
|
|
31337
|
+
var $keys$2 = _objectKeysInternal;
|
|
31338
|
+
var hiddenKeys = _enumBugKeys.concat('length', 'prototype');
|
|
31337
31339
|
|
|
31338
|
-
|
|
31339
|
-
|
|
31340
|
-
|
|
31341
|
-
return _objectGopn;
|
|
31342
|
-
}
|
|
31340
|
+
_objectGopn.f = Object.getOwnPropertyNames || function getOwnPropertyNames(O) {
|
|
31341
|
+
return $keys$2(O, hiddenKeys);
|
|
31342
|
+
};
|
|
31343
31343
|
|
|
31344
31344
|
// fallback for IE11 buggy Object.getOwnPropertyNames with iframe and window
|
|
31345
31345
|
var toIObject$2 = _toIobject;
|
|
31346
|
-
var gOPN$1 =
|
|
31346
|
+
var gOPN$1 = _objectGopn.f;
|
|
31347
31347
|
var toString$5 = {}.toString;
|
|
31348
31348
|
|
|
31349
31349
|
var windowNames = typeof window == 'object' && window && Object.getOwnPropertyNames
|
|
@@ -31368,10 +31368,10 @@ var createDesc$1 = _propertyDesc;
|
|
|
31368
31368
|
var toIObject$1 = _toIobject;
|
|
31369
31369
|
var toPrimitive$1 = _toPrimitive$1;
|
|
31370
31370
|
var has$9 = _has;
|
|
31371
|
-
var IE8_DOM_DEFINE =
|
|
31371
|
+
var IE8_DOM_DEFINE = require_ie8DomDefine();
|
|
31372
31372
|
var gOPD$5 = Object.getOwnPropertyDescriptor;
|
|
31373
31373
|
|
|
31374
|
-
_objectGopd.f =
|
|
31374
|
+
_objectGopd.f = require_descriptors() ? gOPD$5 : function getOwnPropertyDescriptor(O, P) {
|
|
31375
31375
|
O = toIObject$1(O);
|
|
31376
31376
|
P = toPrimitive$1(P, true);
|
|
31377
31377
|
if (IE8_DOM_DEFINE) try {
|
|
@@ -31383,7 +31383,7 @@ _objectGopd.f = _descriptors ? gOPD$5 : function getOwnPropertyDescriptor(O, P)
|
|
|
31383
31383
|
// ECMAScript 6 symbols shim
|
|
31384
31384
|
var global$2 = _globalExports;
|
|
31385
31385
|
var has$8 = _has;
|
|
31386
|
-
var DESCRIPTORS =
|
|
31386
|
+
var DESCRIPTORS = require_descriptors();
|
|
31387
31387
|
var $export$2 = _export;
|
|
31388
31388
|
var redefine = _redefine;
|
|
31389
31389
|
var META = _metaExports.KEY;
|
|
@@ -31402,11 +31402,11 @@ var toObject$1 = _toObject;
|
|
|
31402
31402
|
var toIObject = _toIobject;
|
|
31403
31403
|
var toPrimitive = _toPrimitive$1;
|
|
31404
31404
|
var createDesc = _propertyDesc;
|
|
31405
|
-
var _create$1 =
|
|
31405
|
+
var _create$1 = _objectCreate;
|
|
31406
31406
|
var gOPNExt = _objectGopnExt;
|
|
31407
31407
|
var $GOPD = _objectGopd;
|
|
31408
31408
|
var $GOPS = _objectGops;
|
|
31409
|
-
var $DP =
|
|
31409
|
+
var $DP = require_objectDp();
|
|
31410
31410
|
var $keys$1 = _objectKeys;
|
|
31411
31411
|
var gOPD$4 = $GOPD.f;
|
|
31412
31412
|
var dP = $DP.f;
|
|
@@ -31530,7 +31530,7 @@ if (!USE_NATIVE) {
|
|
|
31530
31530
|
|
|
31531
31531
|
$GOPD.f = $getOwnPropertyDescriptor;
|
|
31532
31532
|
$DP.f = $defineProperty$1;
|
|
31533
|
-
|
|
31533
|
+
_objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
|
|
31534
31534
|
require_objectPie().f = $propertyIsEnumerable;
|
|
31535
31535
|
$GOPS.f = $getOwnPropertySymbols;
|
|
31536
31536
|
|
|
@@ -31712,7 +31712,7 @@ var setPrototypeOf = { "default": setPrototypeOf$1, __esModule: true };
|
|
|
31712
31712
|
|
|
31713
31713
|
var $export = _export;
|
|
31714
31714
|
// 19.1.2.2 / 15.2.3.5 Object.create(O [, Properties])
|
|
31715
|
-
$export($export.S, 'Object', { create:
|
|
31715
|
+
$export($export.S, 'Object', { create: _objectCreate });
|
|
31716
31716
|
|
|
31717
31717
|
var $Object$1 = _coreExports.Object;
|
|
31718
31718
|
var create$3 = function create(P, D) {
|
|
@@ -85375,13 +85375,7 @@ function withTableParams(compOrOpts, pTopLevelOpts) {
|
|
|
85375
85375
|
return {};
|
|
85376
85376
|
}
|
|
85377
85377
|
const mergedOpts = getMergedOpts(topLevelOptions, ownProps);
|
|
85378
|
-
const {
|
|
85379
|
-
formName,
|
|
85380
|
-
urlConnected,
|
|
85381
|
-
history,
|
|
85382
|
-
defaults,
|
|
85383
|
-
onlyOneFilter
|
|
85384
|
-
} = mergedOpts;
|
|
85378
|
+
const { formName, urlConnected, history, defaults, onlyOneFilter } = mergedOpts;
|
|
85385
85379
|
function updateSearch(val) {
|
|
85386
85380
|
setTimeout(function() {
|
|
85387
85381
|
dispatch(change(formName, "reduxFormSearchInput", val || ""));
|
|
@@ -85420,12 +85414,7 @@ function withTableParams(compOrOpts, pTopLevelOpts) {
|
|
|
85420
85414
|
action(...args, currentParams);
|
|
85421
85415
|
};
|
|
85422
85416
|
});
|
|
85423
|
-
const {
|
|
85424
|
-
variables,
|
|
85425
|
-
selectedEntities,
|
|
85426
|
-
mergedOpts,
|
|
85427
|
-
...restStateProps
|
|
85428
|
-
} = stateProps;
|
|
85417
|
+
const { variables, selectedEntities, mergedOpts, ...restStateProps } = stateProps;
|
|
85429
85418
|
const changeFormValue = (...args) => dispatchProps.dispatch(change(formName, ...args));
|
|
85430
85419
|
const tableParams = {
|
|
85431
85420
|
changeFormValue,
|
|
@@ -89321,7 +89310,9 @@ const wrapDialog = (topLevelDialogProps = {}) => (Component) => (props) => {
|
|
|
89321
89310
|
return doNotTriggerClick();
|
|
89322
89311
|
}
|
|
89323
89312
|
const parentEl = r.current?.closest(".bp3-dialog-container");
|
|
89324
|
-
const dialogs = document.querySelectorAll(
|
|
89313
|
+
const dialogs = document.querySelectorAll(
|
|
89314
|
+
".bp3-dialog-container"
|
|
89315
|
+
);
|
|
89325
89316
|
const numDialogs = dialogs?.length;
|
|
89326
89317
|
if (numDialogs > 1) {
|
|
89327
89318
|
const topMostDialog = dialogs[numDialogs - 1];
|
|
@@ -89660,6 +89651,7 @@ function MatchHeaders({
|
|
|
89660
89651
|
marginBottom: 10,
|
|
89661
89652
|
marginLeft: 20,
|
|
89662
89653
|
fontSize: 10
|
|
89654
|
+
/* color: Colors.RED1 */
|
|
89663
89655
|
}
|
|
89664
89656
|
},
|
|
89665
89657
|
userMatchedHeader && [
|
|
@@ -91648,10 +91640,7 @@ const UploadCsvWizardDialog = compose(
|
|
|
91648
91640
|
if (props.filesWIssues.length > 0) {
|
|
91649
91641
|
const reduxFormEntitiesArray = [];
|
|
91650
91642
|
const finishedFiles = props.filesWIssues.map((f, i) => {
|
|
91651
|
-
const {
|
|
91652
|
-
reduxFormEntities,
|
|
91653
|
-
reduxFormCellValidation
|
|
91654
|
-
} = formValueSelector(`editableCellTable-${i}`)(
|
|
91643
|
+
const { reduxFormEntities, reduxFormCellValidation } = formValueSelector(`editableCellTable-${i}`)(
|
|
91655
91644
|
state,
|
|
91656
91645
|
"reduxFormEntities",
|
|
91657
91646
|
"reduxFormCellValidation"
|
|
@@ -103906,7 +103895,14 @@ const EnhancedMenuItem = compose(
|
|
|
103906
103895
|
}
|
|
103907
103896
|
}),
|
|
103908
103897
|
branch(({ navTo }) => navTo, withRouter$1)
|
|
103909
|
-
)(function({
|
|
103898
|
+
)(function({
|
|
103899
|
+
navTo,
|
|
103900
|
+
context,
|
|
103901
|
+
staticContext,
|
|
103902
|
+
didMount,
|
|
103903
|
+
willUnmount,
|
|
103904
|
+
...props
|
|
103905
|
+
}) {
|
|
103910
103906
|
let MenuItemComp = MenuItem;
|
|
103911
103907
|
if (navTo) {
|
|
103912
103908
|
MenuItemComp = MenuItemLink;
|
|
@@ -104964,11 +104960,7 @@ function getCommandHotkeyHandlers(commands) {
|
|
|
104964
104960
|
return handlers;
|
|
104965
104961
|
}
|
|
104966
104962
|
|
|
104967
|
-
const withCommand = (mappings) => (WrappedComponent) => ({
|
|
104968
|
-
cmd,
|
|
104969
|
-
cmdOptions = {},
|
|
104970
|
-
...props
|
|
104971
|
-
}) => {
|
|
104963
|
+
const withCommand = (mappings) => (WrappedComponent) => ({ cmd, cmdOptions = {}, ...props }) => {
|
|
104972
104964
|
const mappedProps = {};
|
|
104973
104965
|
Object.keys(mappings).forEach((k) => {
|
|
104974
104966
|
mappedProps[k] = mappings[k] === "execute" ? (event) => cmd.execute({ event }) : typeof mappings[k] === "function" ? mappings[k](cmd, props) : cmd[mappings[k]];
|
|
@@ -106115,9 +106107,9 @@ const frameTranslations = createReducer(
|
|
|
106115
106107
|
}
|
|
106116
106108
|
},
|
|
106117
106109
|
{
|
|
106118
|
-
|
|
106119
|
-
|
|
106120
|
-
|
|
106110
|
+
1: false,
|
|
106111
|
+
2: false,
|
|
106112
|
+
3: false,
|
|
106121
106113
|
"-1": false,
|
|
106122
106114
|
"-2": false,
|
|
106123
106115
|
"-3": false
|
|
@@ -106846,9 +106838,14 @@ function checkIfNonCircularRangesOverlap(range, comparisonRange) {
|
|
|
106846
106838
|
|
|
106847
106839
|
function checkIfPotentiallyCircularRangesOverlap(range, comparisonRange) {
|
|
106848
106840
|
return splitRangeIntoTwoPartsIfItIsCircular(range, Infinity).some(function(splitRange) {
|
|
106849
|
-
return splitRangeIntoTwoPartsIfItIsCircular(comparisonRange, Infinity).some(
|
|
106850
|
-
|
|
106851
|
-
|
|
106841
|
+
return splitRangeIntoTwoPartsIfItIsCircular(comparisonRange, Infinity).some(
|
|
106842
|
+
function(splitComparisonRange) {
|
|
106843
|
+
return checkIfNonCircularRangesOverlap(
|
|
106844
|
+
splitRange,
|
|
106845
|
+
splitComparisonRange
|
|
106846
|
+
);
|
|
106847
|
+
}
|
|
106848
|
+
);
|
|
106852
106849
|
});
|
|
106853
106850
|
}
|
|
106854
106851
|
|
|
@@ -106858,15 +106855,19 @@ function collapseOverlapsGeneratedFromRangeComparisonIfPossible(overlaps, sequen
|
|
|
106858
106855
|
return overlaps;
|
|
106859
106856
|
} else if (overlaps.length === 2) {
|
|
106860
106857
|
if (overlaps[0].start === 0 && overlaps[1].end + 1 === sequenceLength && !originalRangeLinear) {
|
|
106861
|
-
return [
|
|
106862
|
-
|
|
106863
|
-
|
|
106864
|
-
|
|
106858
|
+
return [
|
|
106859
|
+
{
|
|
106860
|
+
start: overlaps[1].start,
|
|
106861
|
+
end: overlaps[0].end
|
|
106862
|
+
}
|
|
106863
|
+
];
|
|
106865
106864
|
} else if (overlaps[1].start === 0 && overlaps[0].end + 1 === sequenceLength && !originalRangeLinear) {
|
|
106866
|
-
return [
|
|
106867
|
-
|
|
106868
|
-
|
|
106869
|
-
|
|
106865
|
+
return [
|
|
106866
|
+
{
|
|
106867
|
+
start: overlaps[0].start,
|
|
106868
|
+
end: overlaps[1].end
|
|
106869
|
+
}
|
|
106870
|
+
];
|
|
106870
106871
|
} else {
|
|
106871
106872
|
return overlaps;
|
|
106872
106873
|
}
|
|
@@ -106874,17 +106875,29 @@ function collapseOverlapsGeneratedFromRangeComparisonIfPossible(overlaps, sequen
|
|
|
106874
106875
|
const firstOverlap = overlaps[0];
|
|
106875
106876
|
const secondOverlap = overlaps[1];
|
|
106876
106877
|
const thirdOverlap = overlaps[2];
|
|
106877
|
-
let collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106878
|
+
let collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106879
|
+
[firstOverlap, secondOverlap],
|
|
106880
|
+
sequenceLength,
|
|
106881
|
+
optionalOriginalRange
|
|
106882
|
+
);
|
|
106878
106883
|
if (collapsedOverlaps.length === 1) {
|
|
106879
106884
|
collapsedOverlaps.push(thirdOverlap);
|
|
106880
106885
|
return collapsedOverlaps;
|
|
106881
106886
|
} else {
|
|
106882
|
-
collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106887
|
+
collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106888
|
+
[firstOverlap, thirdOverlap],
|
|
106889
|
+
sequenceLength,
|
|
106890
|
+
optionalOriginalRange
|
|
106891
|
+
);
|
|
106883
106892
|
if (collapsedOverlaps.length === 1) {
|
|
106884
106893
|
collapsedOverlaps.push(secondOverlap);
|
|
106885
106894
|
return collapsedOverlaps;
|
|
106886
106895
|
} else {
|
|
106887
|
-
collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106896
|
+
collapsedOverlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
106897
|
+
[secondOverlap, thirdOverlap],
|
|
106898
|
+
sequenceLength,
|
|
106899
|
+
optionalOriginalRange
|
|
106900
|
+
);
|
|
106888
106901
|
if (collapsedOverlaps.length === 1) {
|
|
106889
106902
|
collapsedOverlaps.push(firstOverlap);
|
|
106890
106903
|
return collapsedOverlaps;
|
|
@@ -106906,11 +106919,18 @@ function convertRangeIndices(range, inputType, outputType) {
|
|
|
106906
106919
|
}
|
|
106907
106920
|
|
|
106908
106921
|
function convertRangeTo0Based(range) {
|
|
106909
|
-
return convertRangeIndices(range, {
|
|
106922
|
+
return convertRangeIndices(range, {
|
|
106923
|
+
inclusive1BasedStart: true,
|
|
106924
|
+
inclusive1BasedEnd: true
|
|
106925
|
+
});
|
|
106910
106926
|
}
|
|
106911
106927
|
|
|
106912
106928
|
function convertRangeTo1Based(range) {
|
|
106913
|
-
return convertRangeIndices(
|
|
106929
|
+
return convertRangeIndices(
|
|
106930
|
+
range,
|
|
106931
|
+
{},
|
|
106932
|
+
{ inclusive1BasedStart: true, inclusive1BasedEnd: true }
|
|
106933
|
+
);
|
|
106914
106934
|
}
|
|
106915
106935
|
|
|
106916
106936
|
function provideInclusiveOptions(funToWrap) {
|
|
@@ -107015,7 +107035,11 @@ function expandOrContractCircularRangeToPosition(range, position, maxLength) {
|
|
|
107015
107035
|
let endMoved = true;
|
|
107016
107036
|
if (range.end >= position) {
|
|
107017
107037
|
if (position + maxLength - range.start > range.end - position) {
|
|
107018
|
-
newRange.end = normalizePositionByRangeLength(
|
|
107038
|
+
newRange.end = normalizePositionByRangeLength(
|
|
107039
|
+
position - 1,
|
|
107040
|
+
maxLength,
|
|
107041
|
+
false
|
|
107042
|
+
);
|
|
107019
107043
|
} else {
|
|
107020
107044
|
newRange.start = position;
|
|
107021
107045
|
endMoved = false;
|
|
@@ -107088,19 +107112,31 @@ function expandOrContractRangeToPosition(range, position, maxLength) {
|
|
|
107088
107112
|
if (range.start > range.end) {
|
|
107089
107113
|
return expandOrContractCircularRangeToPosition(range, position, maxLength);
|
|
107090
107114
|
} else {
|
|
107091
|
-
return expandOrContractNonCircularRangeToPosition(
|
|
107115
|
+
return expandOrContractNonCircularRangeToPosition(
|
|
107116
|
+
range,
|
|
107117
|
+
position);
|
|
107092
107118
|
}
|
|
107093
107119
|
}
|
|
107094
107120
|
|
|
107095
107121
|
function translateRange(rangeToBeAdjusted, translateBy, rangeLength) {
|
|
107096
107122
|
return lodashExports.assign({}, rangeToBeAdjusted, {
|
|
107097
|
-
start: normalizePositionByRangeLength(
|
|
107098
|
-
|
|
107123
|
+
start: normalizePositionByRangeLength(
|
|
107124
|
+
rangeToBeAdjusted.start + translateBy,
|
|
107125
|
+
rangeLength
|
|
107126
|
+
),
|
|
107127
|
+
end: normalizePositionByRangeLength(
|
|
107128
|
+
rangeToBeAdjusted.end + translateBy,
|
|
107129
|
+
rangeLength
|
|
107130
|
+
)
|
|
107099
107131
|
});
|
|
107100
107132
|
}
|
|
107101
107133
|
|
|
107102
107134
|
function flipRelativeRange(innerRange, outerRange, sequenceLength, options) {
|
|
107103
|
-
const isFullyContained = isRangeWithinRange(
|
|
107135
|
+
const isFullyContained = isRangeWithinRange(
|
|
107136
|
+
innerRange,
|
|
107137
|
+
outerRange,
|
|
107138
|
+
sequenceLength
|
|
107139
|
+
);
|
|
107104
107140
|
if (isFullyContained) {
|
|
107105
107141
|
return flipFullyContainedRange(innerRange, outerRange, sequenceLength);
|
|
107106
107142
|
} else {
|
|
@@ -107108,40 +107144,91 @@ function flipRelativeRange(innerRange, outerRange, sequenceLength, options) {
|
|
|
107108
107144
|
}
|
|
107109
107145
|
}
|
|
107110
107146
|
function flipNonFullyContainedRange(innerRange, outerRange, sequenceLength, options) {
|
|
107111
|
-
const outerFullyContained = isRangeWithinRange(
|
|
107147
|
+
const outerFullyContained = isRangeWithinRange(
|
|
107148
|
+
outerRange,
|
|
107149
|
+
innerRange,
|
|
107150
|
+
sequenceLength
|
|
107151
|
+
);
|
|
107112
107152
|
let flippedInnerRange;
|
|
107113
107153
|
if (outerFullyContained) {
|
|
107114
|
-
const expandBy1 = getRangeLength(
|
|
107115
|
-
|
|
107116
|
-
|
|
107117
|
-
|
|
107118
|
-
|
|
107119
|
-
|
|
107120
|
-
|
|
107121
|
-
|
|
107122
|
-
|
|
107123
|
-
|
|
107154
|
+
const expandBy1 = getRangeLength(
|
|
107155
|
+
{
|
|
107156
|
+
start: innerRange.start,
|
|
107157
|
+
end: outerRange.start
|
|
107158
|
+
},
|
|
107159
|
+
sequenceLength
|
|
107160
|
+
) - 1;
|
|
107161
|
+
flippedInnerRange = expandOrContractRangeByLength(
|
|
107162
|
+
outerRange,
|
|
107163
|
+
expandBy1,
|
|
107164
|
+
false,
|
|
107165
|
+
sequenceLength
|
|
107166
|
+
);
|
|
107167
|
+
const expandBy2 = getRangeLength(
|
|
107168
|
+
{
|
|
107169
|
+
end: innerRange.end,
|
|
107170
|
+
start: outerRange.end
|
|
107171
|
+
},
|
|
107172
|
+
sequenceLength
|
|
107173
|
+
) - 1;
|
|
107174
|
+
flippedInnerRange = expandOrContractRangeByLength(
|
|
107175
|
+
flippedInnerRange,
|
|
107176
|
+
expandBy2,
|
|
107177
|
+
true,
|
|
107178
|
+
sequenceLength
|
|
107179
|
+
);
|
|
107124
107180
|
} else {
|
|
107125
|
-
const overlaps = getOverlapsOfPotentiallyCircularRanges(
|
|
107181
|
+
const overlaps = getOverlapsOfPotentiallyCircularRanges(
|
|
107182
|
+
innerRange,
|
|
107183
|
+
outerRange,
|
|
107184
|
+
sequenceLength
|
|
107185
|
+
);
|
|
107126
107186
|
if (overlaps.length >= 1) {
|
|
107127
107187
|
let overlapExtendsForward;
|
|
107128
107188
|
const firstOverlap = overlaps[0];
|
|
107129
107189
|
overlapExtendsForward = firstOverlap.start !== outerRange.start;
|
|
107130
|
-
const flippedTruncatedInner = flipFullyContainedRange(
|
|
107190
|
+
const flippedTruncatedInner = flipFullyContainedRange(
|
|
107191
|
+
firstOverlap,
|
|
107192
|
+
outerRange,
|
|
107193
|
+
sequenceLength
|
|
107194
|
+
);
|
|
107131
107195
|
const lengthToExtend = getRangeLength(innerRange, sequenceLength) - getRangeLength(flippedTruncatedInner, sequenceLength);
|
|
107132
|
-
flippedInnerRange = expandOrContractRangeByLength(
|
|
107196
|
+
flippedInnerRange = expandOrContractRangeByLength(
|
|
107197
|
+
flippedTruncatedInner,
|
|
107198
|
+
lengthToExtend,
|
|
107199
|
+
overlapExtendsForward,
|
|
107200
|
+
sequenceLength
|
|
107201
|
+
);
|
|
107133
107202
|
} else {
|
|
107134
|
-
throw new Error(
|
|
107203
|
+
throw new Error(
|
|
107204
|
+
"This case (relative ranges that do not overlap) is unsupported! "
|
|
107205
|
+
);
|
|
107135
107206
|
}
|
|
107136
107207
|
}
|
|
107137
107208
|
return flippedInnerRange;
|
|
107138
107209
|
}
|
|
107139
107210
|
function flipFullyContainedRange(innerRange, outerRange, sequenceLength, options) {
|
|
107140
107211
|
const translateBy = -outerRange.start;
|
|
107141
|
-
const translatedOuterRange = translateRange(
|
|
107142
|
-
|
|
107143
|
-
|
|
107144
|
-
|
|
107212
|
+
const translatedOuterRange = translateRange(
|
|
107213
|
+
outerRange,
|
|
107214
|
+
translateBy,
|
|
107215
|
+
sequenceLength
|
|
107216
|
+
);
|
|
107217
|
+
const translatedInnerRange = translateRange(
|
|
107218
|
+
innerRange,
|
|
107219
|
+
translateBy,
|
|
107220
|
+
sequenceLength
|
|
107221
|
+
);
|
|
107222
|
+
const translatedFlippedInnerRange = flipNonOriginSpanningContainedRange(
|
|
107223
|
+
translatedInnerRange,
|
|
107224
|
+
translatedOuterRange,
|
|
107225
|
+
sequenceLength
|
|
107226
|
+
);
|
|
107227
|
+
const flippedInnerRange = translateRange(
|
|
107228
|
+
translatedFlippedInnerRange,
|
|
107229
|
+
-translateBy,
|
|
107230
|
+
sequenceLength
|
|
107231
|
+
);
|
|
107145
107232
|
return flippedInnerRange;
|
|
107146
107233
|
}
|
|
107147
107234
|
function flipNonOriginSpanningContainedRange(innerRange, outerRange, sequenceLength) {
|
|
@@ -107313,9 +107400,15 @@ function trimNumberToFitWithin0ToAnotherNumber(numberToBeTrimmed, max) {
|
|
|
107313
107400
|
}
|
|
107314
107401
|
|
|
107315
107402
|
function zeroSubrangeByContainerRange(subRange, containerRange, sequenceLength) {
|
|
107316
|
-
const trimmedSubRange = trimRangeByAnotherRange(
|
|
107403
|
+
const trimmedSubRange = trimRangeByAnotherRange(
|
|
107404
|
+
subRange,
|
|
107405
|
+
containerRange,
|
|
107406
|
+
sequenceLength
|
|
107407
|
+
);
|
|
107317
107408
|
if (trimmedSubRange) {
|
|
107318
|
-
throw new Error(
|
|
107409
|
+
throw new Error(
|
|
107410
|
+
"subRange must be fully contained by containerRange! Otherwise this function does not make sense"
|
|
107411
|
+
);
|
|
107319
107412
|
}
|
|
107320
107413
|
const newSubrange = {};
|
|
107321
107414
|
newSubrange.start = subRange.start - containerRange.start;
|
|
@@ -107342,12 +107435,24 @@ function modulo(n, m) {
|
|
|
107342
107435
|
}
|
|
107343
107436
|
|
|
107344
107437
|
function getZeroedRangeOverlaps(annotation, selection, sequenceLength) {
|
|
107345
|
-
const overlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
107438
|
+
const overlaps = collapseOverlapsGeneratedFromRangeComparisonIfPossible(
|
|
107439
|
+
getOverlapsOfPotentiallyCircularRanges(
|
|
107440
|
+
annotation,
|
|
107441
|
+
selection,
|
|
107442
|
+
sequenceLength
|
|
107443
|
+
),
|
|
107444
|
+
sequenceLength,
|
|
107445
|
+
annotation
|
|
107446
|
+
);
|
|
107346
107447
|
const zeroedOverlaps = overlaps.map((overlap) => {
|
|
107347
|
-
return zeroSubrangeByContainerRange(
|
|
107348
|
-
|
|
107349
|
-
|
|
107350
|
-
|
|
107448
|
+
return zeroSubrangeByContainerRange(
|
|
107449
|
+
overlap,
|
|
107450
|
+
{
|
|
107451
|
+
start: selection.start,
|
|
107452
|
+
end: normalizePositionByRangeLength(selection.start - 1, sequenceLength)
|
|
107453
|
+
},
|
|
107454
|
+
sequenceLength
|
|
107455
|
+
);
|
|
107351
107456
|
});
|
|
107352
107457
|
return zeroedOverlaps;
|
|
107353
107458
|
}
|
|
@@ -114053,7 +114158,7 @@ const calcTmMethods = {
|
|
|
114053
114158
|
calculateTemperature: function(sequence, type, A, R, C, Na) {
|
|
114054
114159
|
if (typeof type === "undefined") {
|
|
114055
114160
|
type = this.TABLE_BRESLAUER;
|
|
114056
|
-
} else if (type != this.TABLE_BRESLAUER &&
|
|
114161
|
+
} else if (type != this.TABLE_BRESLAUER && type != this.TABLE_UNIFIED && type != this.TABLE_SUGIMOTO) {
|
|
114057
114162
|
throw new Error("Invalid table type!");
|
|
114058
114163
|
}
|
|
114059
114164
|
if (!A) {
|
|
@@ -122312,12 +122417,7 @@ function findSequenceMatches(sequence, searchString, options = {}) {
|
|
|
122312
122417
|
return matches;
|
|
122313
122418
|
}
|
|
122314
122419
|
function findSequenceMatchesTopStrand(sequence, searchString, options = {}) {
|
|
122315
|
-
const {
|
|
122316
|
-
isCircular,
|
|
122317
|
-
isAmbiguous,
|
|
122318
|
-
isProteinSequence,
|
|
122319
|
-
isProteinSearch
|
|
122320
|
-
} = options;
|
|
122420
|
+
const { isCircular, isAmbiguous, isProteinSequence, isProteinSearch } = options;
|
|
122321
122421
|
let searchStringToUse = escapeStringRegexp(searchString);
|
|
122322
122422
|
if (isAmbiguous) {
|
|
122323
122423
|
if (isProteinSearch || isProteinSequence) {
|
|
@@ -122399,7 +122499,10 @@ function convertAmbiguousStringToRegex(string, isProtein) {
|
|
|
122399
122499
|
|
|
122400
122500
|
function getComplementSequenceString(sequence, isRna) {
|
|
122401
122501
|
let complementSeqString = "";
|
|
122402
|
-
const complementMap = lodashExports.merge(
|
|
122502
|
+
const complementMap = lodashExports.merge(
|
|
122503
|
+
DNAComplementMap,
|
|
122504
|
+
isRna ? { a: "u", A: "U" } : { a: "t", A: "T" }
|
|
122505
|
+
);
|
|
122403
122506
|
for (let i = 0; i < sequence.length; i++) {
|
|
122404
122507
|
let complementChar = complementMap[sequence[i]];
|
|
122405
122508
|
if (!complementChar) {
|
|
@@ -122986,6 +123089,19 @@ function createInitialSequence(options) {
|
|
|
122986
123089
|
};
|
|
122987
123090
|
}
|
|
122988
123091
|
|
|
123092
|
+
function extractFileExtension(name) {
|
|
123093
|
+
if (typeof name === "string") {
|
|
123094
|
+
let ext = "";
|
|
123095
|
+
const match = name.match(/\.(\w+)$/);
|
|
123096
|
+
if (match && match[1]) {
|
|
123097
|
+
ext = match[1];
|
|
123098
|
+
}
|
|
123099
|
+
return ext;
|
|
123100
|
+
} else {
|
|
123101
|
+
return "";
|
|
123102
|
+
}
|
|
123103
|
+
}
|
|
123104
|
+
|
|
122989
123105
|
function splitStringIntoLines(string) {
|
|
122990
123106
|
let lines = [];
|
|
122991
123107
|
if (string === "") {
|
|
@@ -123559,7 +123675,11 @@ function validateSequenceArray(parsingResultArray, options) {
|
|
|
123559
123675
|
return parsingResultArray;
|
|
123560
123676
|
}
|
|
123561
123677
|
|
|
123562
|
-
function fastaToJson(fileString, options) {
|
|
123678
|
+
function fastaToJson(fileString, options = {}) {
|
|
123679
|
+
const ext = extractFileExtension(options.fileName);
|
|
123680
|
+
if (/^(faa)$/.test(ext)) {
|
|
123681
|
+
options.isProtein = true;
|
|
123682
|
+
}
|
|
123563
123683
|
let resultArray = [];
|
|
123564
123684
|
let result = null;
|
|
123565
123685
|
try {
|
|
@@ -126031,19 +126151,6 @@ function parseSbolJson(sbolJson, options) {
|
|
|
126031
126151
|
};
|
|
126032
126152
|
}
|
|
126033
126153
|
|
|
126034
|
-
function extractFileExtension(name) {
|
|
126035
|
-
if (typeof name === "string") {
|
|
126036
|
-
let ext = "";
|
|
126037
|
-
const match = name.match(/\.(\w+)$/);
|
|
126038
|
-
if (match && match[1]) {
|
|
126039
|
-
ext = match[1];
|
|
126040
|
-
}
|
|
126041
|
-
return ext;
|
|
126042
|
-
} else {
|
|
126043
|
-
return "";
|
|
126044
|
-
}
|
|
126045
|
-
}
|
|
126046
|
-
|
|
126047
126154
|
/*!
|
|
126048
126155
|
* Copyright 2008 Fair Oaks Labs, Inc.
|
|
126049
126156
|
* All rights reserved.
|
|
@@ -135066,10 +135173,7 @@ async function geneiousXmlToJson(string, options) {
|
|
|
135066
135173
|
});
|
|
135067
135174
|
}
|
|
135068
135175
|
});
|
|
135069
|
-
const toRet = lodashExports.filter(
|
|
135070
|
-
resultArray,
|
|
135071
|
-
(r) => r?.parsedSequence?.sequence?.length
|
|
135072
|
-
);
|
|
135176
|
+
const toRet = lodashExports.filter(resultArray, (r) => r?.parsedSequence?.sequence?.length);
|
|
135073
135177
|
if (toRet.length)
|
|
135074
135178
|
return toRet;
|
|
135075
135179
|
return onFileParsed(resultArray);
|
|
@@ -135171,10 +135275,7 @@ async function jbeiXmlToJson(string, options) {
|
|
|
135171
135275
|
messages: ["Error while parsing JBEI format"]
|
|
135172
135276
|
});
|
|
135173
135277
|
}
|
|
135174
|
-
const toRet = lodashExports.filter(
|
|
135175
|
-
resultArray,
|
|
135176
|
-
(r) => r?.parsedSequence?.sequence?.length
|
|
135177
|
-
);
|
|
135278
|
+
const toRet = lodashExports.filter(resultArray, (r) => r?.parsedSequence?.sequence?.length);
|
|
135178
135279
|
if (toRet.length)
|
|
135179
135280
|
return toRet;
|
|
135180
135281
|
return onFileParsed(resultArray);
|
|
@@ -135760,7 +135861,7 @@ async function anyToJson(fileContentStringOrFileObj, options) {
|
|
|
135760
135861
|
);
|
|
135761
135862
|
}
|
|
135762
135863
|
}
|
|
135763
|
-
if (/^(fasta|fas|fa|fna|ffn)$/.test(ext)) {
|
|
135864
|
+
if (/^(fasta|fas|fa|fna|ffn|faa)$/.test(ext)) {
|
|
135764
135865
|
return fastaToJson(fileContentString, options);
|
|
135765
135866
|
} else if (/^(gb|gbk)$/.test(ext)) {
|
|
135766
135867
|
return genbankToJson(fileContentString, options);
|
|
@@ -138449,10 +138550,7 @@ const lastSavedId$1 = /*#__PURE__*/Object.freeze(/*#__PURE__*/Object.definePrope
|
|
|
138449
138550
|
lastSavedIdUpdate
|
|
138450
138551
|
}, Symbol.toStringTag, { value: 'Module' }));
|
|
138451
138552
|
|
|
138452
|
-
const toggleReadOnlyMode = createMetaAction(
|
|
138453
|
-
"TOGGLE_READ_ONLY_MODE",
|
|
138454
|
-
lodashExports.noop
|
|
138455
|
-
);
|
|
138553
|
+
const toggleReadOnlyMode = createMetaAction("TOGGLE_READ_ONLY_MODE", lodashExports.noop);
|
|
138456
138554
|
const updateReadOnlyMode = createMetaAction("UPDATE_READ_ONLY_MODE");
|
|
138457
138555
|
const readOnly = createReducer(
|
|
138458
138556
|
{
|
|
@@ -142165,6 +142263,9 @@ function showAddOrEditAnnotationDialog({
|
|
|
142165
142263
|
overrideName: `AddOrEdit${nameUpper}DialogOverride`,
|
|
142166
142264
|
dialogType,
|
|
142167
142265
|
props: {
|
|
142266
|
+
...annotation.isEditLocked && {
|
|
142267
|
+
readOnly: typeof annotation.isEditLocked === "string" ? annotation.isEditLocked : "This annotation is locked"
|
|
142268
|
+
},
|
|
142168
142269
|
dialogProps: {
|
|
142169
142270
|
title: annotation && annotation.id ? `Edit ${nameUpper}` : `New ${nameUpper}`
|
|
142170
142271
|
},
|
|
@@ -142806,7 +142907,8 @@ function mapStateToProps(state, ownProps) {
|
|
|
142806
142907
|
editorName,
|
|
142807
142908
|
sequenceData: sequenceDataFromProps,
|
|
142808
142909
|
allowSeqDataOverride,
|
|
142809
|
-
allowMultipleFeatureDirections
|
|
142910
|
+
allowMultipleFeatureDirections,
|
|
142911
|
+
readOnly
|
|
142810
142912
|
} = ownProps;
|
|
142811
142913
|
const editorState = getEditorState(state, editorName);
|
|
142812
142914
|
const meta = { editorName };
|
|
@@ -142866,6 +142968,7 @@ function mapStateToProps(state, ownProps) {
|
|
|
142866
142968
|
const f = getFindTool(findTool, matchesTotal);
|
|
142867
142969
|
return {
|
|
142868
142970
|
...editorState,
|
|
142971
|
+
readOnly: readOnly || editorState.readOnly,
|
|
142869
142972
|
meta,
|
|
142870
142973
|
annotationToAdd,
|
|
142871
142974
|
...newSelection && { selectionLayer: newSelection },
|
|
@@ -161050,7 +161153,7 @@ function showFileDialog({ multiple = false, onSelect }) {
|
|
|
161050
161153
|
}
|
|
161051
161154
|
|
|
161052
161155
|
const name = "@teselagen/ove";
|
|
161053
|
-
const version = "0.3.
|
|
161156
|
+
const version = "0.3.11";
|
|
161054
161157
|
const main = "./src/index.js";
|
|
161055
161158
|
const exports$1 = {
|
|
161056
161159
|
".": {
|
|
@@ -161660,7 +161763,7 @@ const fileCommandDefs = {
|
|
|
161660
161763
|
isHidden: isProtein
|
|
161661
161764
|
},
|
|
161662
161765
|
deleteSequence: {
|
|
161663
|
-
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || !props.onDelete,
|
|
161766
|
+
isDisabled: (props) => props.disableBpEditing && bpEditingDisabledTooltip || props.readOnly && readOnlyDisabledTooltip || !props.onDelete,
|
|
161664
161767
|
isHidden: (props) => !props.onDelete,
|
|
161665
161768
|
handler: (props) => props.onDelete(props.sequenceData)
|
|
161666
161769
|
},
|
|
@@ -161859,6 +161962,7 @@ Object.keys(defaultCopyOptions).forEach((type) => {
|
|
|
161859
161962
|
};
|
|
161860
161963
|
});
|
|
161861
161964
|
const readOnlyDisabledTooltip = "Sorry this function is not allowed in Read-Only Mode";
|
|
161965
|
+
const bpEditingDisabledTooltip = "Sequence Editing Disabled";
|
|
161862
161966
|
const noSelection = ({ selectionLayer = {} }) => !(selectionLayer.start > -1 && selectionLayer.end > -1) && "Selection Required";
|
|
161863
161967
|
const triggerClipboardCommand = (type) => {
|
|
161864
161968
|
const wrapper = document.querySelector(".veVectorInteractionWrapper");
|
|
@@ -161890,8 +161994,8 @@ const editCommandDefs = {
|
|
|
161890
161994
|
handler: lodashExports.noop
|
|
161891
161995
|
},
|
|
161892
161996
|
cut: {
|
|
161893
|
-
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || props.sequenceLength === 0,
|
|
161894
|
-
isHidden: (props) => props.readOnly,
|
|
161997
|
+
isDisabled: (props) => props.disableBpEditing && bpEditingDisabledTooltip || props.readOnly && readOnlyDisabledTooltip || props.sequenceLength === 0,
|
|
161998
|
+
isHidden: (props) => props.readOnly || props.disableBpEditing,
|
|
161895
161999
|
handler: () => {
|
|
161896
162000
|
triggerClipboardCommand("cut");
|
|
161897
162001
|
},
|
|
@@ -161916,7 +162020,7 @@ const editCommandDefs = {
|
|
|
161916
162020
|
},
|
|
161917
162021
|
paste: {
|
|
161918
162022
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip,
|
|
161919
|
-
isHidden: (props) => props.readOnly,
|
|
162023
|
+
isHidden: (props) => props.readOnly || props.disableBpEditing,
|
|
161920
162024
|
handler: () => triggerClipboardCommand("paste"),
|
|
161921
162025
|
hotkey: "mod+v"
|
|
161922
162026
|
},
|
|
@@ -162070,12 +162174,12 @@ const editCommandDefs = {
|
|
|
162070
162174
|
hotkey: "mod+i"
|
|
162071
162175
|
},
|
|
162072
162176
|
complementSelection: {
|
|
162073
|
-
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162177
|
+
isHidden: (props) => props.readOnly || isProtein(props) || props.disableBpEditing,
|
|
162074
162178
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || noSelection(props),
|
|
162075
162179
|
handler: (props) => props.handleComplementSelection()
|
|
162076
162180
|
},
|
|
162077
162181
|
complementEntireSequence: {
|
|
162078
|
-
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162182
|
+
isHidden: (props) => props.readOnly || isProtein(props) || props.disableBpEditing,
|
|
162079
162183
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || props.sequenceLength === 0,
|
|
162080
162184
|
handler: (props) => props.handleComplementSequence()
|
|
162081
162185
|
},
|
|
@@ -162227,13 +162331,13 @@ const editCommandDefs = {
|
|
|
162227
162331
|
// }
|
|
162228
162332
|
// },
|
|
162229
162333
|
reverseComplementSelection: {
|
|
162230
|
-
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || noSelection(props),
|
|
162334
|
+
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || noSelection(props) || props.disableBpEditing,
|
|
162231
162335
|
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162232
162336
|
handler: (props) => props.handleReverseComplementSelection(),
|
|
162233
162337
|
hotkey: "mod+e"
|
|
162234
162338
|
},
|
|
162235
162339
|
reverseComplementEntireSequence: {
|
|
162236
|
-
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162340
|
+
isHidden: (props) => props.readOnly || isProtein(props) || props.disableBpEditing,
|
|
162237
162341
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || props.sequenceLength === 0,
|
|
162238
162342
|
handler: (props) => props.handleReverseComplementSequence()
|
|
162239
162343
|
},
|
|
@@ -162383,7 +162487,7 @@ const editCommandDefs = {
|
|
|
162383
162487
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || props.sequenceLength === 0
|
|
162384
162488
|
},
|
|
162385
162489
|
rotateToCaretPosition: {
|
|
162386
|
-
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162490
|
+
isHidden: (props) => props.readOnly || isProtein(props) || props.disableBpEditing,
|
|
162387
162491
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip || props.caretPosition === -1 && "You must first place cursor" || !props.sequenceData.circular && "Disabled for Linear Sequences" || props.sequenceLength === 0,
|
|
162388
162492
|
handler: (props) => props.handleRotateToCaretPosition(),
|
|
162389
162493
|
hotkey: "mod+b"
|
|
@@ -162392,13 +162496,13 @@ const editCommandDefs = {
|
|
|
162392
162496
|
};
|
|
162393
162497
|
const cirularityCommandDefs = {
|
|
162394
162498
|
circular: {
|
|
162395
|
-
isHidden: (props) => props.readOnly || isProtein(props),
|
|
162499
|
+
isHidden: (props) => props.readOnly || isProtein(props) || props.disableBpEditing,
|
|
162396
162500
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip,
|
|
162397
162501
|
handler: (props) => props.updateCircular(true),
|
|
162398
162502
|
isActive: (props) => props && props.sequenceData.circular
|
|
162399
162503
|
},
|
|
162400
162504
|
linear: {
|
|
162401
|
-
isHidden: (props) => props.readOnly,
|
|
162505
|
+
isHidden: (props) => props.readOnly || props.disableBpEditing,
|
|
162402
162506
|
isDisabled: (props) => props.readOnly && readOnlyDisabledTooltip,
|
|
162403
162507
|
handler: (props) => props.updateCircular(false),
|
|
162404
162508
|
isActive: (props) => props && !props.sequenceData.circular
|
|
@@ -162425,29 +162529,27 @@ const nicheAnnotations = [
|
|
|
162425
162529
|
}
|
|
162426
162530
|
];
|
|
162427
162531
|
const labelToggleCommandDefs = {};
|
|
162428
|
-
["feature", "part", "cutsite", "primer", ...nicheAnnotations].forEach(
|
|
162429
|
-
|
|
162430
|
-
|
|
162431
|
-
|
|
162432
|
-
|
|
162433
|
-
|
|
162434
|
-
|
|
162435
|
-
|
|
162436
|
-
|
|
162437
|
-
|
|
162438
|
-
|
|
162439
|
-
|
|
162440
|
-
|
|
162441
|
-
|
|
162442
|
-
|
|
162443
|
-
|
|
162444
|
-
|
|
162445
|
-
|
|
162446
|
-
|
|
162447
|
-
|
|
162448
|
-
|
|
162449
|
-
}
|
|
162450
|
-
);
|
|
162532
|
+
["feature", "part", "cutsite", "primer", ...nicheAnnotations].forEach((_type) => {
|
|
162533
|
+
let rest = {};
|
|
162534
|
+
let type = _type;
|
|
162535
|
+
if (_type.type) {
|
|
162536
|
+
type = _type.type.slice(0, -1);
|
|
162537
|
+
rest = _type;
|
|
162538
|
+
}
|
|
162539
|
+
const cmdId = `toggle${lodashExports.upperFirst(type)}Labels`;
|
|
162540
|
+
const plural = type + "s";
|
|
162541
|
+
labelToggleCommandDefs[cmdId] = {
|
|
162542
|
+
toggle: ["show", "hide"],
|
|
162543
|
+
handler: (props) => props.annotationLabelVisibilityToggle(plural),
|
|
162544
|
+
isHidden: (props) => {
|
|
162545
|
+
return props && props.typesToOmit && props.typesToOmit[plural] === false;
|
|
162546
|
+
},
|
|
162547
|
+
...rest,
|
|
162548
|
+
isActive: (props) => {
|
|
162549
|
+
return props && props.annotationLabelVisibility[plural];
|
|
162550
|
+
}
|
|
162551
|
+
};
|
|
162552
|
+
});
|
|
162451
162553
|
const editAnnotationCommandDefs = ["feature", "part", "primer"].reduce(
|
|
162452
162554
|
(acc, key) => {
|
|
162453
162555
|
acc[`edit${lodashExports.upperFirst(key)}`] = {
|
|
@@ -166636,8 +166738,12 @@ function VectorInteractionHOC(Component) {
|
|
|
166636
166738
|
caretPosition = -1,
|
|
166637
166739
|
selectionLayer = { start: -1, end: -1 },
|
|
166638
166740
|
readOnly,
|
|
166639
|
-
onPaste
|
|
166741
|
+
onPaste,
|
|
166742
|
+
disableBpEditing
|
|
166640
166743
|
} = this.props;
|
|
166744
|
+
if (disableBpEditing) {
|
|
166745
|
+
return window.toastr.warning("Sorry the underlying sequence is locked");
|
|
166746
|
+
}
|
|
166641
166747
|
if (readOnly) {
|
|
166642
166748
|
return window.toastr.warning("Sorry the sequence is Read-Only");
|
|
166643
166749
|
}
|
|
@@ -166678,6 +166784,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166678
166784
|
sequenceData,
|
|
166679
166785
|
selectionLayer,
|
|
166680
166786
|
copyOptions,
|
|
166787
|
+
disableBpEditing,
|
|
166681
166788
|
readOnly
|
|
166682
166789
|
} = this.props;
|
|
166683
166790
|
const onCut = this.props.onCut || this.props.onCopy || lodashExports.noop;
|
|
@@ -166703,7 +166810,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166703
166810
|
);
|
|
166704
166811
|
if (!(this.sequenceDataToCopy || {}).textToCopy && !seqData.sequence.length)
|
|
166705
166812
|
return window.toastr.warning(
|
|
166706
|
-
`No Sequence Selected To ${isCut && !readOnly ? "Cut" : "Copy"}`
|
|
166813
|
+
`No Sequence Selected To ${isCut && !(readOnly || disableBpEditing) ? "Cut" : "Copy"}`
|
|
166707
166814
|
);
|
|
166708
166815
|
const clipboardData = e.clipboardData;
|
|
166709
166816
|
const textToCopy = (this.sequenceDataToCopy || {}).textToCopy !== void 0 ? this.sequenceDataToCopy.textToCopy : seqData.isProtein ? seqData.proteinSequence : seqData.sequence;
|
|
@@ -166711,7 +166818,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166711
166818
|
clipboardData.setData("text/plain", textToCopy);
|
|
166712
166819
|
clipboardData.setData("application/json", JSON.stringify(seqData));
|
|
166713
166820
|
e.preventDefault();
|
|
166714
|
-
if (isCut && !readOnly) {
|
|
166821
|
+
if (isCut && !(readOnly || disableBpEditing) && !disableBpEditing) {
|
|
166715
166822
|
this.handleDnaDelete(false);
|
|
166716
166823
|
onCut(
|
|
166717
166824
|
e,
|
|
@@ -166724,7 +166831,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166724
166831
|
document.body.removeEventListener("copy", this.handleCopy);
|
|
166725
166832
|
}
|
|
166726
166833
|
window.toastr.success(
|
|
166727
|
-
`Selection ${isCut && !readOnly ? "Cut" : "Copied"}`
|
|
166834
|
+
`Selection ${isCut && !(readOnly || disableBpEditing) && !disableBpEditing ? "Cut" : "Copied"}`
|
|
166728
166835
|
);
|
|
166729
166836
|
this.sequenceDataToCopy = void 0;
|
|
166730
166837
|
};
|
|
@@ -166735,14 +166842,18 @@ function VectorInteractionHOC(Component) {
|
|
|
166735
166842
|
caretPosition = -1,
|
|
166736
166843
|
selectionLayer = { start: -1, end: -1 },
|
|
166737
166844
|
sequenceData = { sequence: "" },
|
|
166738
|
-
readOnly
|
|
166845
|
+
readOnly,
|
|
166846
|
+
disableBpEditing
|
|
166739
166847
|
// updateSequenceData,
|
|
166740
166848
|
// wrappedInsertSequenceDataAtPositionOrRange
|
|
166741
166849
|
// handleInsert
|
|
166742
166850
|
} = this.props;
|
|
166743
166851
|
const sequenceLength = sequenceData.sequence.length;
|
|
166744
166852
|
const isReplace = selectionLayer.start > -1;
|
|
166745
|
-
if (
|
|
166853
|
+
if (disableBpEditing) {
|
|
166854
|
+
return window.toastr.warning("Sorry the underlying sequence is locked");
|
|
166855
|
+
}
|
|
166856
|
+
if (readOnly || disableBpEditing) {
|
|
166746
166857
|
window.toastr.warning("Sorry the sequence is Read-Only");
|
|
166747
166858
|
} else {
|
|
166748
166859
|
createSequenceInputPopup({
|
|
@@ -166770,13 +166881,17 @@ function VectorInteractionHOC(Component) {
|
|
|
166770
166881
|
selectionLayer = { start: -1, end: -1 },
|
|
166771
166882
|
sequenceData = { sequence: "" },
|
|
166772
166883
|
readOnly,
|
|
166884
|
+
disableBpEditing,
|
|
166773
166885
|
updateSequenceData,
|
|
166774
166886
|
wrappedInsertSequenceDataAtPositionOrRange,
|
|
166775
166887
|
caretPositionUpdate
|
|
166776
166888
|
// handleInsert
|
|
166777
166889
|
} = this.props;
|
|
166778
166890
|
const sequenceLength = sequenceData.sequence.length;
|
|
166779
|
-
if (
|
|
166891
|
+
if (disableBpEditing) {
|
|
166892
|
+
return window.toastr.warning("Sorry the underlying sequence is locked");
|
|
166893
|
+
}
|
|
166894
|
+
if (readOnly || disableBpEditing) {
|
|
166780
166895
|
return window.toastr.warning("Sorry the sequence is Read-Only");
|
|
166781
166896
|
}
|
|
166782
166897
|
if (sequenceLength > 0) {
|
|
@@ -166907,7 +167022,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166907
167022
|
};
|
|
166908
167023
|
// eslint-disable-next-line no-unused-vars
|
|
166909
167024
|
getCopyOptions = (annotation) => {
|
|
166910
|
-
const { sequenceData, readOnly, selectionLayer } = this.props;
|
|
167025
|
+
const { sequenceData, readOnly, disableBpEditing, selectionLayer } = this.props;
|
|
166911
167026
|
const { isProtein } = sequenceData;
|
|
166912
167027
|
const makeTextCopyable = (transformFunc, className, action = "copy") => {
|
|
166913
167028
|
return new Clipboard$1(`.${className}`, {
|
|
@@ -166967,7 +167082,7 @@ function VectorInteractionHOC(Component) {
|
|
|
166967
167082
|
}
|
|
166968
167083
|
};
|
|
166969
167084
|
return [
|
|
166970
|
-
...readOnly ? [] : [
|
|
167085
|
+
...readOnly || disableBpEditing ? [] : [
|
|
166971
167086
|
{
|
|
166972
167087
|
text: "Replace",
|
|
166973
167088
|
...this.insertHelper
|
|
@@ -167041,21 +167156,14 @@ function VectorInteractionHOC(Component) {
|
|
|
167041
167156
|
this.openVeCopyAAReverse && this.openVeCopyAAReverse.destroy();
|
|
167042
167157
|
},
|
|
167043
167158
|
didMount: ({ className }) => {
|
|
167044
|
-
this.openVeCopyAAReverse = makeTextCopyable(
|
|
167045
|
-
(selectedSeqData)
|
|
167046
|
-
|
|
167047
|
-
|
|
167048
|
-
|
|
167049
|
-
|
|
167050
|
-
|
|
167051
|
-
|
|
167052
|
-
return {
|
|
167053
|
-
...revSeqData,
|
|
167054
|
-
textToCopy
|
|
167055
|
-
};
|
|
167056
|
-
},
|
|
167057
|
-
className
|
|
167058
|
-
);
|
|
167159
|
+
this.openVeCopyAAReverse = makeTextCopyable((selectedSeqData) => {
|
|
167160
|
+
const revSeqData = getReverseComplementSequenceAndAnnoations(selectedSeqData);
|
|
167161
|
+
const textToCopy = isProtein ? revSeqData.proteinSequence.toUpperCase() : getAminoAcidStringFromSequenceString(revSeqData.sequence);
|
|
167162
|
+
return {
|
|
167163
|
+
...revSeqData,
|
|
167164
|
+
textToCopy
|
|
167165
|
+
};
|
|
167166
|
+
}, className);
|
|
167059
167167
|
}
|
|
167060
167168
|
},
|
|
167061
167169
|
{
|
|
@@ -167162,11 +167270,12 @@ function VectorInteractionHOC(Component) {
|
|
|
167162
167270
|
({ nearestCaretPos, shiftHeld, event }) => {
|
|
167163
167271
|
this.updateSelectionOrCaret(shiftHeld, nearestCaretPos);
|
|
167164
167272
|
const {
|
|
167165
|
-
readOnly
|
|
167273
|
+
readOnly,
|
|
167274
|
+
disableBpEditing
|
|
167166
167275
|
// sequenceData: { circular }
|
|
167167
167276
|
} = this.props;
|
|
167168
167277
|
const menu = [
|
|
167169
|
-
...readOnly ? [] : [
|
|
167278
|
+
...readOnly || disableBpEditing ? [] : [
|
|
167170
167279
|
{
|
|
167171
167280
|
text: "Insert",
|
|
167172
167281
|
...this.insertHelper
|
|
@@ -167212,8 +167321,7 @@ function VectorInteractionHOC(Component) {
|
|
|
167212
167321
|
overlapsSelf: annotation.overlapsSelf
|
|
167213
167322
|
});
|
|
167214
167323
|
return [
|
|
167215
|
-
"
|
|
167216
|
-
"deletePart",
|
|
167324
|
+
...getEditDeleteHandlers("Part", annotation),
|
|
167217
167325
|
"--",
|
|
167218
167326
|
...this.getSelectionMenuOptions(annotation),
|
|
167219
167327
|
"--",
|
|
@@ -167255,8 +167363,7 @@ function VectorInteractionHOC(Component) {
|
|
|
167255
167363
|
event.persist();
|
|
167256
167364
|
const { readOnly, annotationsToSupport: { parts } = {} } = this.props;
|
|
167257
167365
|
return [
|
|
167258
|
-
"
|
|
167259
|
-
"deleteFeature",
|
|
167366
|
+
...getEditDeleteHandlers("Feature", annotation),
|
|
167260
167367
|
...this.getSelectionMenuOptions(annotation),
|
|
167261
167368
|
...readOnly ? [] : [
|
|
167262
167369
|
...parts && [
|
|
@@ -167323,8 +167430,7 @@ function VectorInteractionHOC(Component) {
|
|
|
167323
167430
|
end: annotation.end
|
|
167324
167431
|
});
|
|
167325
167432
|
return [
|
|
167326
|
-
"
|
|
167327
|
-
"deletePrimer",
|
|
167433
|
+
...getEditDeleteHandlers("Primer", annotation),
|
|
167328
167434
|
...this.getSelectionMenuOptions(annotation),
|
|
167329
167435
|
"showRemoveDuplicatesDialogPrimers",
|
|
167330
167436
|
"viewPrimerProperties"
|
|
@@ -167534,6 +167640,28 @@ const insertAndSelectHelper = ({ seqDataToInsert, props }) => {
|
|
|
167534
167640
|
end: newSelectionLayerEnd % newSeqData.sequence.length
|
|
167535
167641
|
});
|
|
167536
167642
|
};
|
|
167643
|
+
function getEditDeleteHandlers(type, annotation) {
|
|
167644
|
+
return [
|
|
167645
|
+
...annotation.isEditLocked ? [
|
|
167646
|
+
{
|
|
167647
|
+
shouldDismissPopover: false,
|
|
167648
|
+
text: /* @__PURE__ */ React__default$1.createElement(
|
|
167649
|
+
"div",
|
|
167650
|
+
{
|
|
167651
|
+
style: {
|
|
167652
|
+
fontSize: 11,
|
|
167653
|
+
fontStyle: "italic",
|
|
167654
|
+
color: "rgba(0,0,0,.5)"
|
|
167655
|
+
}
|
|
167656
|
+
},
|
|
167657
|
+
typeof annotation.isEditLocked === "string" ? annotation.isEditLocked : `Note: This Annotation is Locked`
|
|
167658
|
+
)
|
|
167659
|
+
}
|
|
167660
|
+
] : [],
|
|
167661
|
+
`edit${type}`,
|
|
167662
|
+
...annotation.isEditLocked ? [] : [`delete${type}`]
|
|
167663
|
+
];
|
|
167664
|
+
}
|
|
167537
167665
|
|
|
167538
167666
|
const style$i = '';
|
|
167539
167667
|
|
|
@@ -174691,7 +174819,11 @@ const GoToDialog = createSimpleDialog({
|
|
|
174691
174819
|
}
|
|
174692
174820
|
}
|
|
174693
174821
|
],
|
|
174694
|
-
withDialogProps: {
|
|
174822
|
+
withDialogProps: {
|
|
174823
|
+
title: "Go To",
|
|
174824
|
+
height: 190,
|
|
174825
|
+
onCloseHook: tryToRefocusEditor
|
|
174826
|
+
}
|
|
174695
174827
|
});
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174696
174828
|
|
|
174697
174829
|
const validate$1 = (val, vals, props) => {
|
|
@@ -177351,6 +177483,7 @@ class AddOrEditAnnotationDialog extends React__default$1.Component {
|
|
|
177351
177483
|
overlapsSelf,
|
|
177352
177484
|
start,
|
|
177353
177485
|
end,
|
|
177486
|
+
readOnly,
|
|
177354
177487
|
getAdditionalEditAnnotationComps,
|
|
177355
177488
|
advancedOptions,
|
|
177356
177489
|
advancedDefaultOpen,
|
|
@@ -177445,10 +177578,11 @@ class AddOrEditAnnotationDialog extends React__default$1.Component {
|
|
|
177445
177578
|
"tg-upsert-annotation"
|
|
177446
177579
|
)
|
|
177447
177580
|
},
|
|
177581
|
+
typeof readOnly === "string" ? /* @__PURE__ */ React__default$1.createElement(Callout, { intent: "primary", style: { marginBottom: 10 } }, readOnly) : null,
|
|
177448
177582
|
/* @__PURE__ */ React__default$1.createElement(
|
|
177449
177583
|
InputField,
|
|
177450
177584
|
{
|
|
177451
|
-
disabled:
|
|
177585
|
+
disabled: readOnly,
|
|
177452
177586
|
inlineLabel: true,
|
|
177453
177587
|
tooltipError: true,
|
|
177454
177588
|
autoFocus: true,
|
|
@@ -180386,15 +180520,15 @@ class Browser {
|
|
|
180386
180520
|
}
|
|
180387
180521
|
// Edge 20+
|
|
180388
180522
|
static isEdge() {
|
|
180389
|
-
return Browser.isBrowser() &&
|
|
180523
|
+
return Browser.isBrowser() && !Browser.isIE() && !!window.StyleMedia;
|
|
180390
180524
|
}
|
|
180391
180525
|
// Chrome 1+
|
|
180392
180526
|
static isChrome() {
|
|
180393
|
-
return Browser.isBrowser() &&
|
|
180527
|
+
return Browser.isBrowser() && !!window.chrome && !!window.chrome.webstore;
|
|
180394
180528
|
}
|
|
180395
180529
|
// Blink engine detection
|
|
180396
180530
|
static isBlink() {
|
|
180397
|
-
return Browser.isBrowser() && (
|
|
180531
|
+
return Browser.isBrowser() && (Browser.isChrome() || Browser.isOpera()) && !!window.CSS;
|
|
180398
180532
|
}
|
|
180399
180533
|
static getUserAgent() {
|
|
180400
180534
|
return typeof navigator === "undefined" ? "" : navigator.userAgent;
|
|
@@ -182987,6 +183121,8 @@ const userDefinedHandlersAndOpts = [
|
|
|
182987
183121
|
"hideSingleImport",
|
|
182988
183122
|
"beforeAnnotationCreate",
|
|
182989
183123
|
"disableSetReadOnly",
|
|
183124
|
+
"allowAnnotationEditLocking",
|
|
183125
|
+
"disableBpEditing",
|
|
182990
183126
|
"showReadOnly",
|
|
182991
183127
|
"showCircularity",
|
|
182992
183128
|
"onHiddenEnzymeAdd",
|
|
@@ -184400,9 +184536,7 @@ const genericAnnotationProperties = ({
|
|
|
184400
184536
|
AnchorButton,
|
|
184401
184537
|
{
|
|
184402
184538
|
onClick: () => {
|
|
184403
|
-
deleteAnnotation(
|
|
184404
|
-
annotationPropertiesSelectedEntities
|
|
184405
|
-
);
|
|
184539
|
+
deleteAnnotation(annotationPropertiesSelectedEntities);
|
|
184406
184540
|
},
|
|
184407
184541
|
className: "tgDeleteAnnsBtn",
|
|
184408
184542
|
intent: "danger",
|