@teselagen/ove 0.0.15 → 0.0.18

package/index.umd.js

@@ -57197,12 +57197,20 @@
     return toString$4.call(it).slice(8, -1);
   };
 
-  // fallback for non-array-like ES3 and non-enumerable old V8 strings
-  var cof$2 = _cof;
-  // eslint-disable-next-line no-prototype-builtins
-  var _iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
-    return cof$2(it) == 'String' ? it.split('') : Object(it);
-  };
+  var _iobject;
+  var hasRequired_iobject;
+
+  function require_iobject () {
+  	if (hasRequired_iobject) return _iobject;
+  	hasRequired_iobject = 1;
+  	// fallback for non-array-like ES3 and non-enumerable old V8 strings
+  	var cof = _cof;
+  	// eslint-disable-next-line no-prototype-builtins
+  	_iobject = Object('z').propertyIsEnumerable(0) ? Object : function (it) {
+  	  return cof(it) == 'String' ? it.split('') : Object(it);
+  	};
+  	return _iobject;
+  }
 
   // 7.2.1 RequireObjectCoercible(argument)
   var _defined = function (it) {
@@ -57211,7 +57219,7 @@
   };
 
   // to indexed object, toObject with fallback for non-array-like ES3 strings
-  var IObject = _iobject;
+  var IObject = require_iobject();
   var defined$2 = _defined;
   var _toIobject = function (it) {
     return IObject(defined$2(it));
@@ -57331,7 +57339,14 @@
 
   var _objectPie = {};
 
-  _objectPie.f = {}.propertyIsEnumerable;
+  var hasRequired_objectPie;
+
+  function require_objectPie () {
+  	if (hasRequired_objectPie) return _objectPie;
+  	hasRequired_objectPie = 1;
+  	_objectPie.f = {}.propertyIsEnumerable;
+  	return _objectPie;
+  }
 
   // 7.1.13 ToObject(argument)
   var defined$1 = _defined;
@@ -57349,9 +57364,9 @@
   	var DESCRIPTORS = _descriptors;
   	var getKeys = _objectKeys;
   	var gOPS = _objectGops;
-  	var pIE = _objectPie;
+  	var pIE = require_objectPie();
   	var toObject = _toObject;
-  	var IObject = _iobject;
+  	var IObject = require_iobject();
   	var $assign = Object.assign;
 
   	// should work with symbols and should have deterministic property order (V8 bug)
@@ -58064,7 +58079,7 @@
   // all enumerable object keys, includes symbols
   var getKeys = _objectKeys;
   var gOPS$1 = _objectGops;
-  var pIE$1 = _objectPie;
+  var pIE$1 = require_objectPie();
   var _enumKeys = function (it) {
     var result = getKeys(it);
     var getSymbols = gOPS$1.f;
@@ -58117,7 +58132,7 @@
 
   var _objectGopd = {};
 
-  var pIE = _objectPie;
+  var pIE = require_objectPie();
   var createDesc$1 = _propertyDesc;
   var toIObject$1 = _toIobject;
   var toPrimitive$1 = _toPrimitive$1;
@@ -58285,7 +58300,7 @@
     $GOPD.f = $getOwnPropertyDescriptor;
     $DP.f = $defineProperty;
     _objectGopn.f = gOPNExt.f = $getOwnPropertyNames;
-    _objectPie.f = $propertyIsEnumerable;
+    require_objectPie().f = $propertyIsEnumerable;
     $GOPS.f = $getOwnPropertySymbols;
 
     if (DESCRIPTORS && !_library) {
@@ -79444,7 +79459,7 @@
     return 2 ** ++powers
   }
 
-  const types$3 = /*#__PURE__*/Object.freeze(/*#__PURE__*/Object.defineProperty({
+  const types$2 = /*#__PURE__*/Object.freeze(/*#__PURE__*/Object.defineProperty({
     __proto__: null,
     boolean,
     booleanish,
@@ -79457,7 +79472,7 @@
 
   /** @type {Array<keyof types>} */
   // @ts-expect-error: hush.
-  const checks = Object.keys(types$3);
+  const checks = Object.keys(types$2);
 
   class DefinedInfo extends Info {
     /**
@@ -79477,7 +79492,7 @@
       if (typeof mask === 'number') {
         while (++index < checks.length) {
           const check = checks[index];
-          mark(this, checks[index], (mask & types$3[check]) === types$3[check]);
+          mark(this, checks[index], (mask & types$2[check]) === types$2[check]);
         }
       }
     }
@@ -126207,8 +126222,7 @@
     const zipExtracted = await extractZipFiles(file);
     const acceptedFiles = [];
     for (const extFile of zipExtracted) {
-      const extension = "." + getExt(extFile);
-      if (accepted.some((ext) => ext === extension)) {
+      if (accepted.some((ext) => ext?.replace(".", "") === getExt(extFile))) {
         acceptedFiles.push(extFile);
       }
     }
@@ -133376,12 +133390,12 @@
 
   const noop$4 = () => void 0;
 
-  var types$2 = {};
+  var types$1 = {};
   function add$1(name) {
-    types$2[name] = true;
+    types$1[name] = true;
   }
   function has$1(name) {
-    return !!types$2[name];
+    return !!types$1[name];
   }
   function check(name) {
     if (has$1(name)) {
@@ -152071,10 +152085,11 @@
     );
   }
 
-  function getComplementSequenceString(sequence) {
+  function getComplementSequenceString(sequence, isRna) {
     let complementSeqString = "";
+    const complementMap = lodashExports.merge(DNAComplementMap, isRna ? { a: "u", A: "U" } : { a: "t", A: "T" });
     for (let i = 0; i < sequence.length; i++) {
-      let complementChar = DNAComplementMap[sequence[i]];
+      let complementChar = complementMap[sequence[i]];
       if (!complementChar) {
         complementChar = sequence[i];
       }
@@ -152184,7 +152199,7 @@
       options
     );
     const newSeqObj = Object.assign({}, seqObj, {
-      sequence: getComplementSequenceString(seqObj.sequence)
+      sequence: getComplementSequenceString(seqObj.sequence, seqObj.isRna)
     });
     return tidyUpSequenceData(newSeqObj, options);
   }
@@ -153607,7 +153622,7 @@
           options.sequenceTypeFromLocus = item;
           options.isProtein = true;
         }
-        if (j === 4 && (item.match(/ds-dna/i) || item.match(/ss-dna/i) || item.match(/dna/i))) {
+        if (j === 4 && (item.match(/ds-dna/i) || item.match(/ss-dna/i) || item.match(/dna/i) || item.match(/rna/i))) {
           if (options.isProtein === void 0) {
             options.isProtein = false;
           }
@@ -153615,6 +153630,9 @@
           if (item.match(/ss-dna/i)) {
             options.isSingleStrandedDNA = true;
           }
+          if (item.match(/rna/i) && !item.match(/ss-rna/i)) {
+            options.isDoubleStrandedRNA = true;
+          }
         }
         if (typeof lineArr[j] === "string" && gbDivisions[lineArr[j].toUpperCase()]) {
           gbDivision = lineArr[j].toUpperCase();
@@ -153626,6 +153644,7 @@
       result.parsedSequence.gbDivision = gbDivision;
       result.parsedSequence.sequenceTypeFromLocus = options.sequenceTypeFromLocus;
       result.parsedSequence.isSingleStrandedDNA = options.isSingleStrandedDNA;
+      result.parsedSequence.isDoubleStrandedRNA = options.isDoubleStrandedRNA;
       result.parsedSequence.date = date;
       result.parsedSequence.circular = circular;
     }
@@ -167200,9 +167219,9 @@
     if (serSeq.isProtein) {
       dnaType = "";
     } else if (serSeq.type === "RNA") {
-      dnaType = "RNA";
+      dnaType = serSeq?.doubleStranded ? "RNA" : serSeq?.sequenceTypeFromLocus ?? "ss-RNA";
     } else {
-      dnaType = serSeq?.sequenceTypeFromLocus ?? "DNA";
+      dnaType = serSeq?.doubleStranded ? "DNA" : serSeq?.sequenceTypeFromLocus ?? "DNA";
     }
     const date = getCurrentDateString();
     let line = StringUtil.rpad("LOCUS", " ", 12);
@@ -189905,23 +189924,14 @@ double click --> edit`}`;
   }
 
   const name = "@teselagen/ove";
-  const version = "0.0.14";
-  const main = "./index.js";
-  const types$1 = "./index.d.ts";
+  const version = "0.0.17";
+  const main = "./src/index.js";
   const type = "commonjs";
-  const exports$1 = {
-  	".": {
-  		"import": "./index.mjs",
-  		require: "./index.js"
-  	}
-  };
   const packageJson = {
   	name: name,
   	version: version,
   	main: main,
-  	types: types$1,
-  	type: type,
-  	exports: exports$1
+  	type: type
   };
 
   const PartTagSearch = withEditorProps(PartToolDropdown);

package/package.json

@@ -1,16 +1,15 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.0.15",
-  "main": "./index.js",
-  "types": "./index.d.ts",
+  "version": "0.0.18",
+  "main": "./src/index.js",
   "type": "module",
-  "exports": {
-    ".": {
-      "import": "./index.mjs",
-      "require": "./index.js"
-    }
-  },
   "dependencies": {
+    "@teselagen/sequence-utils": "0.1.19",
+    "@teselagen/range-utils": "0.1.18",
+    "@teselagen/ui": "0.0.23",
+    "@teselagen/file-utils": "0.2.25",
+    "@teselagen/bounce-loader": "0.0.12",
+    "@teselagen/bio-parsers": "0.1.24",
     "@blueprintjs/core": "3.52.0",
     "@blueprintjs/datetime": "3.23.19",
     "@blueprintjs/icons": "3.33.0",
@@ -49,6 +48,7 @@
     "math-expression-evaluator": "^1.3.7",
     "mobx": "^6.9.0",
     "mobx-react": "^7.6.0",
+    "mock-fs": "5.2.0",
     "nanoid": "^4.0.0",
     "node-interval-tree": "^1.3.3",
     "papaparse": "^5.3.2",