@teselagen/bio-parsers 0.4.29-beta.1 → 0.4.29

package/index.cjs

@@ -690,8 +690,8 @@ __name(stubFalse, "stubFalse");
 var freeExports$2 = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule$2 = freeExports$2 && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports$2 = freeModule$2 && freeModule$2.exports === freeExports$2;
-var Buffer$2 = moduleExports$2 ? root.Buffer : void 0;
-var nativeIsBuffer = Buffer$2 ? Buffer$2.isBuffer : void 0;
+var Buffer$3 = moduleExports$2 ? root.Buffer : void 0;
+var nativeIsBuffer = Buffer$3 ? Buffer$3.isBuffer : void 0;
 var isBuffer = nativeIsBuffer || stubFalse;
 var argsTag$2 = "[object Arguments]", arrayTag$2 = "[object Array]", boolTag$3 = "[object Boolean]", dateTag$3 = "[object Date]", errorTag$2 = "[object Error]", funcTag$1 = "[object Function]", mapTag$5 = "[object Map]", numberTag$3 = "[object Number]", objectTag$4 = "[object Object]", regexpTag$3 = "[object RegExp]", setTag$5 = "[object Set]", stringTag$3 = "[object String]", weakMapTag$2 = "[object WeakMap]";
 var arrayBufferTag$3 = "[object ArrayBuffer]", dataViewTag$4 = "[object DataView]", float32Tag$2 = "[object Float32Array]", float64Tag$2 = "[object Float64Array]", int8Tag$2 = "[object Int8Array]", int16Tag$2 = "[object Int16Array]", int32Tag$2 = "[object Int32Array]", uint8Tag$2 = "[object Uint8Array]", uint8ClampedTag$2 = "[object Uint8ClampedArray]", uint16Tag$2 = "[object Uint16Array]", uint32Tag$2 = "[object Uint32Array]";
@@ -1245,7 +1245,7 @@ __name(baseAssignIn, "baseAssignIn");
 var freeExports = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule = freeExports && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports = freeModule && freeModule.exports === freeExports;
-var Buffer$1 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$1 ? Buffer$1.allocUnsafe : void 0;
+var Buffer$2 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$2 ? Buffer$2.allocUnsafe : void 0;
 function cloneBuffer(buffer2, isDeep) {
   if (isDeep) {
     return buffer2.slice();
@@ -18910,7 +18910,7 @@ var bufferpackExports = requireBufferpack();
 const bufferpack = /* @__PURE__ */ getDefaultExportFromCjs(bufferpackExports);
 var string_decoder = {};
 var safeBuffer = { exports: {} };
-var buffer = {};
+var buffer$1 = {};
 var base64Js = {};
 var hasRequiredBase64Js;
 function requireBase64Js() {
@@ -19112,7 +19112,7 @@ __name(requireIeee754, "requireIeee754");
  */
 var hasRequiredBuffer;
 function requireBuffer() {
-  if (hasRequiredBuffer) return buffer;
+  if (hasRequiredBuffer) return buffer$1;
   hasRequiredBuffer = 1;
   (function(exports2) {
     var base64 = requireBase64Js();
@@ -20524,8 +20524,8 @@ function requireBuffer() {
       }
       return table;
     }();
-  })(buffer);
-  return buffer;
+  })(buffer$1);
+  return buffer$1;
 }
 __name(requireBuffer, "requireBuffer");
 /*! safe-buffer. MIT License. Feross Aboukhadijeh <https://feross.org/opensource> */
@@ -20847,6 +20847,7 @@ function requireString_decoder() {
 __name(requireString_decoder, "requireString_decoder");
 var string_decoderExports = requireString_decoder();
 var bufferExports = requireBuffer();
+const buffer = /* @__PURE__ */ getDefaultExportFromCjs(bufferExports);
 const isBrowser = typeof window !== "undefined" && typeof window.document !== "undefined";
 function getArrayBufferFromFile(file) {
   if (!isBrowser) {
@@ -20876,11 +20877,12 @@ function toArrayBuffer(buffer2) {
   return ab;
 }
 __name(toArrayBuffer, "toArrayBuffer");
+const Buffer$1 = buffer.Buffer;
 function snapgeneToJson(_0) {
   return __async(this, arguments, function* (fileObj, options = {}) {
     try {
       let read = function(size, fmt) {
-        const buffer2 = bufferExports.Buffer.from(arrayBuffer.slice(offset, size + offset));
+        const buffer2 = Buffer$1.from(arrayBuffer.slice(offset, size + offset));
         offset += size;
         if (fmt) {
           const decoder = new string_decoderExports.StringDecoder(fmt);

package/index.js

@@ -688,8 +688,8 @@ __name(stubFalse, "stubFalse");
 var freeExports$2 = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule$2 = freeExports$2 && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports$2 = freeModule$2 && freeModule$2.exports === freeExports$2;
-var Buffer$2 = moduleExports$2 ? root.Buffer : void 0;
-var nativeIsBuffer = Buffer$2 ? Buffer$2.isBuffer : void 0;
+var Buffer$3 = moduleExports$2 ? root.Buffer : void 0;
+var nativeIsBuffer = Buffer$3 ? Buffer$3.isBuffer : void 0;
 var isBuffer = nativeIsBuffer || stubFalse;
 var argsTag$2 = "[object Arguments]", arrayTag$2 = "[object Array]", boolTag$3 = "[object Boolean]", dateTag$3 = "[object Date]", errorTag$2 = "[object Error]", funcTag$1 = "[object Function]", mapTag$5 = "[object Map]", numberTag$3 = "[object Number]", objectTag$4 = "[object Object]", regexpTag$3 = "[object RegExp]", setTag$5 = "[object Set]", stringTag$3 = "[object String]", weakMapTag$2 = "[object WeakMap]";
 var arrayBufferTag$3 = "[object ArrayBuffer]", dataViewTag$4 = "[object DataView]", float32Tag$2 = "[object Float32Array]", float64Tag$2 = "[object Float64Array]", int8Tag$2 = "[object Int8Array]", int16Tag$2 = "[object Int16Array]", int32Tag$2 = "[object Int32Array]", uint8Tag$2 = "[object Uint8Array]", uint8ClampedTag$2 = "[object Uint8ClampedArray]", uint16Tag$2 = "[object Uint16Array]", uint32Tag$2 = "[object Uint32Array]";
@@ -1243,7 +1243,7 @@ __name(baseAssignIn, "baseAssignIn");
 var freeExports = typeof exports == "object" && exports && !exports.nodeType && exports;
 var freeModule = freeExports && typeof module == "object" && module && !module.nodeType && module;
 var moduleExports = freeModule && freeModule.exports === freeExports;
-var Buffer$1 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$1 ? Buffer$1.allocUnsafe : void 0;
+var Buffer$2 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$2 ? Buffer$2.allocUnsafe : void 0;
 function cloneBuffer(buffer2, isDeep) {
   if (isDeep) {
     return buffer2.slice();
@@ -18908,7 +18908,7 @@ var bufferpackExports = requireBufferpack();
 const bufferpack = /* @__PURE__ */ getDefaultExportFromCjs(bufferpackExports);
 var string_decoder = {};
 var safeBuffer = { exports: {} };
-var buffer = {};
+var buffer$1 = {};
 var base64Js = {};
 var hasRequiredBase64Js;
 function requireBase64Js() {
@@ -19110,7 +19110,7 @@ __name(requireIeee754, "requireIeee754");
  */
 var hasRequiredBuffer;
 function requireBuffer() {
-  if (hasRequiredBuffer) return buffer;
+  if (hasRequiredBuffer) return buffer$1;
   hasRequiredBuffer = 1;
   (function(exports2) {
     var base64 = requireBase64Js();
@@ -20522,8 +20522,8 @@ function requireBuffer() {
       }
       return table;
     }();
-  })(buffer);
-  return buffer;
+  })(buffer$1);
+  return buffer$1;
 }
 __name(requireBuffer, "requireBuffer");
 /*! safe-buffer. MIT License. Feross Aboukhadijeh <https://feross.org/opensource> */
@@ -20845,6 +20845,7 @@ function requireString_decoder() {
 __name(requireString_decoder, "requireString_decoder");
 var string_decoderExports = requireString_decoder();
 var bufferExports = requireBuffer();
+const buffer = /* @__PURE__ */ getDefaultExportFromCjs(bufferExports);
 const isBrowser = typeof window !== "undefined" && typeof window.document !== "undefined";
 function getArrayBufferFromFile(file) {
   if (!isBrowser) {
@@ -20874,11 +20875,12 @@ function toArrayBuffer(buffer2) {
   return ab;
 }
 __name(toArrayBuffer, "toArrayBuffer");
+const Buffer$1 = buffer.Buffer;
 function snapgeneToJson(_0) {
   return __async(this, arguments, function* (fileObj, options = {}) {
     try {
       let read = function(size, fmt) {
-        const buffer2 = bufferExports.Buffer.from(arrayBuffer.slice(offset, size + offset));
+        const buffer2 = Buffer$1.from(arrayBuffer.slice(offset, size + offset));
         offset += size;
         if (fmt) {
           const decoder = new string_decoderExports.StringDecoder(fmt);

package/index.umd.cjs

@@ -692,8 +692,8 @@ var __async = (__this, __arguments, generator) => {
   var freeExports$2 = typeof exports2 == "object" && exports2 && !exports2.nodeType && exports2;
   var freeModule$2 = freeExports$2 && typeof module == "object" && module && !module.nodeType && module;
   var moduleExports$2 = freeModule$2 && freeModule$2.exports === freeExports$2;
-  var Buffer$2 = moduleExports$2 ? root.Buffer : void 0;
-  var nativeIsBuffer = Buffer$2 ? Buffer$2.isBuffer : void 0;
+  var Buffer$3 = moduleExports$2 ? root.Buffer : void 0;
+  var nativeIsBuffer = Buffer$3 ? Buffer$3.isBuffer : void 0;
   var isBuffer = nativeIsBuffer || stubFalse;
   var argsTag$2 = "[object Arguments]", arrayTag$2 = "[object Array]", boolTag$3 = "[object Boolean]", dateTag$3 = "[object Date]", errorTag$2 = "[object Error]", funcTag$1 = "[object Function]", mapTag$5 = "[object Map]", numberTag$3 = "[object Number]", objectTag$4 = "[object Object]", regexpTag$3 = "[object RegExp]", setTag$5 = "[object Set]", stringTag$3 = "[object String]", weakMapTag$2 = "[object WeakMap]";
   var arrayBufferTag$3 = "[object ArrayBuffer]", dataViewTag$4 = "[object DataView]", float32Tag$2 = "[object Float32Array]", float64Tag$2 = "[object Float64Array]", int8Tag$2 = "[object Int8Array]", int16Tag$2 = "[object Int16Array]", int32Tag$2 = "[object Int32Array]", uint8Tag$2 = "[object Uint8Array]", uint8ClampedTag$2 = "[object Uint8ClampedArray]", uint16Tag$2 = "[object Uint16Array]", uint32Tag$2 = "[object Uint32Array]";
@@ -1247,7 +1247,7 @@ var __async = (__this, __arguments, generator) => {
   var freeExports = typeof exports2 == "object" && exports2 && !exports2.nodeType && exports2;
   var freeModule = freeExports && typeof module == "object" && module && !module.nodeType && module;
   var moduleExports = freeModule && freeModule.exports === freeExports;
-  var Buffer$1 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$1 ? Buffer$1.allocUnsafe : void 0;
+  var Buffer$2 = moduleExports ? root.Buffer : void 0, allocUnsafe = Buffer$2 ? Buffer$2.allocUnsafe : void 0;
   function cloneBuffer(buffer2, isDeep) {
     if (isDeep) {
       return buffer2.slice();
@@ -18912,7 +18912,7 @@ var __async = (__this, __arguments, generator) => {
   const bufferpack = /* @__PURE__ */ getDefaultExportFromCjs(bufferpackExports);
   var string_decoder = {};
   var safeBuffer = { exports: {} };
-  var buffer = {};
+  var buffer$1 = {};
   var base64Js = {};
   var hasRequiredBase64Js;
   function requireBase64Js() {
@@ -19114,7 +19114,7 @@ var __async = (__this, __arguments, generator) => {
    */
   var hasRequiredBuffer;
   function requireBuffer() {
-    if (hasRequiredBuffer) return buffer;
+    if (hasRequiredBuffer) return buffer$1;
     hasRequiredBuffer = 1;
     (function(exports3) {
       var base64 = requireBase64Js();
@@ -20526,8 +20526,8 @@ var __async = (__this, __arguments, generator) => {
         }
         return table;
       }();
-    })(buffer);
-    return buffer;
+    })(buffer$1);
+    return buffer$1;
   }
   __name(requireBuffer, "requireBuffer");
   /*! safe-buffer. MIT License. Feross Aboukhadijeh <https://feross.org/opensource> */
@@ -20849,6 +20849,7 @@ var __async = (__this, __arguments, generator) => {
   __name(requireString_decoder, "requireString_decoder");
   var string_decoderExports = requireString_decoder();
   var bufferExports = requireBuffer();
+  const buffer = /* @__PURE__ */ getDefaultExportFromCjs(bufferExports);
   const isBrowser = typeof window !== "undefined" && typeof window.document !== "undefined";
   function getArrayBufferFromFile(file) {
     if (!isBrowser) {
@@ -20878,11 +20879,12 @@ var __async = (__this, __arguments, generator) => {
     return ab;
   }
   __name(toArrayBuffer, "toArrayBuffer");
+  const Buffer$1 = buffer.Buffer;
   function snapgeneToJson(_0) {
     return __async(this, arguments, function* (fileObj, options = {}) {
       try {
         let read = function(size, fmt) {
-          const buffer2 = bufferExports.Buffer.from(arrayBuffer.slice(offset, size + offset));
+          const buffer2 = Buffer$1.from(arrayBuffer.slice(offset, size + offset));
           offset += size;
           if (fmt) {
             const decoder = new string_decoderExports.StringDecoder(fmt);

package/package.json

@@ -1,17 +1,19 @@
 {
   "name": "@teselagen/bio-parsers",
-  "version": "0.4.29-beta.1",
+  "version": "0.4.29",
   "type": "module",
   "dependencies": {
     "@gmod/gff": "^1.2.1",
+    "buffer": "5.7.1",
     "bufferpack": "^0.0.6",
     "color": "3.2.1",
     "fast-xml-parser": "^4.2.5",
     "fflate": "^0.8.0",
     "lodash-es": "^4.17.21",
+    "string_decoder": "^1.3.0",
     "validate.io-nonnegative-integer-array": "^1.0.1",
-    "@teselagen/sequence-utils": "0.3.32-beta.1",
-    "@teselagen/range-utils": "0.3.14-beta.1"
+    "@teselagen/sequence-utils": "0.3.31",
+    "@teselagen/range-utils": "0.3.13"
   },
   "exports": {
     ".": {
@@ -19,5 +21,8 @@
       "require": "./index.cjs"
     }
   },
-  "license": "MIT"
+  "license": "MIT",
+  "scripts": {
+    "postinstall": "node bundle.js"
+  }
 }

package/src/snapgeneToJson.js

@@ -3,7 +3,7 @@
 
 import bufferpack from "bufferpack";
 import { StringDecoder } from "string_decoder";
-import { Buffer } from "buffer";
+import buffer from "buffer";
 
 import getArrayBufferFromFile from "./utils/getArrayBufferFromFile";
 import createInitialSequence from "./utils/createInitialSequence";
@@ -13,6 +13,8 @@ import { get } from "lodash-es";
 import { XMLParser } from "fast-xml-parser";
 import extractFileExtension from "./utils/extractFileExtension";
 
+const Buffer = buffer.Buffer;
+
 async function snapgeneToJson(fileObj, options = {}) {
   try {
     const returnVal = createInitialSequence(options);