@teselagen/bio-parsers 0.4.23-beta.3 → 0.4.24
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.cjs +1907 -1616
- package/index.js +1907 -1616
- package/index.umd.cjs +1904 -1613
- package/package.json +2 -2
- package/src/ab1ToJson.js +4 -0
package/package.json
CHANGED
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@@ -1,9 +1,9 @@
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1
1
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{
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2
2
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"name": "@teselagen/bio-parsers",
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3
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-
"version": "0.4.
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3
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+
"version": "0.4.24",
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4
4
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"type": "module",
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5
5
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"dependencies": {
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6
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-
"@teselagen/sequence-utils": "0.3.
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6
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+
"@teselagen/sequence-utils": "0.3.28",
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7
7
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"@teselagen/range-utils": "0.3.10",
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8
8
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"@gmod/gff": "^1.2.1",
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9
9
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"buffer": "^6.0.3",
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package/src/ab1ToJson.js
CHANGED
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@@ -80,6 +80,9 @@ function abConverter(inputArrayBuffer) {
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80
80
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traceData.gTrace = this.getDataTag(tagDict.colorDataG);
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81
81
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traceData.cTrace = this.getDataTag(tagDict.colorDataC);
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82
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traceData.basePos = this.getDataTag(tagDict.peakLocations);
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83
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+
if (traceData.basePos === undefined) {
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84
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+
traceData.basePos = this.getDataTag(tagDict.peakLocationsUser);
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85
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+
}
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83
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traceData.baseCalls = this.getDataTag(tagDict.baseCalls2);
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84
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traceData.qualNums = this.getDataTag(tagDict.qualNums);
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85
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if (traceData.qualNums) {
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@@ -109,6 +112,7 @@ const tagDict = {
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109
112
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baseCalls2: { tagName: "PBAS", tagNum: 2, typeToReturn: "getChar" },
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110
113
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qualNums: { tagName: "PCON", tagNum: 2, typeToReturn: "getNumber" },
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111
114
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peakLocations: { tagName: "PLOC", tagNum: 2, typeToReturn: "getShort" },
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115
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+
peakLocationsUser: { tagName: "PLOC", tagNum: 1, typeToReturn: "getShort" },
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112
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peakDev: { tagName: "P1RL", tagNum: 1, typeToReturn: "getShort" },
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113
117
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peakOneAmp: { tagName: "P1AM", tagNum: 1, typeToReturn: "getShort" },
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114
118
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colorDataA: { tagName: "DATA", tagNum: 10, typeToReturn: "getShort" },
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