@teselagen/bio-parsers 0.4.22 → 0.4.23-beta.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.cjs +8 -7
- package/index.js +8 -7
- package/index.umd.cjs +8 -7
- package/package.json +9 -2
package/index.cjs
CHANGED
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@@ -7436,12 +7436,18 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
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7436
7436
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let positionInCodon = 0;
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7437
7437
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for (let i = 0; i < basesRead; i++) {
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7438
7438
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const posInCds = i + index;
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7439
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+
const sequenceIndex = codonPositionsInCDS.includes(posInCds) ? absoluteCodonPositions[codonPositionsInCDS.indexOf(posInCds)] : positionInCdsToPositionInMainSequence(
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7440
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+
posInCds,
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7441
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+
forward,
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7442
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+
translationRange,
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7443
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+
originalSequenceStringLength
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7444
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+
);
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7439
7445
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if (codonPositionsInCDS.includes(posInCds)) {
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7440
7446
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aminoAcidDataForEachBaseOfDNA.push({
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7441
7447
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aminoAcid,
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7442
7448
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positionInCodon,
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7443
7449
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aminoAcidIndex,
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7444
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-
sequenceIndex
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7450
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+
sequenceIndex,
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7445
7451
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codonRange,
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7446
7452
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fullCodon: codonPositionsInCDS.length === 3
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7447
7453
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});
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@@ -7451,12 +7457,7 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
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7451
7457
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aminoAcid: null,
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7452
7458
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positionInCodon: null,
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7453
7459
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aminoAcidIndex: null,
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7454
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-
sequenceIndex
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7455
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-
posInCds,
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7456
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-
forward,
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7457
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-
translationRange,
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7458
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-
originalSequenceStringLength
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7459
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-
),
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7460
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+
sequenceIndex,
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7460
7461
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codonRange: null,
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7461
7462
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fullCodon: null
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7462
7463
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});
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package/index.js
CHANGED
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@@ -7434,12 +7434,18 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
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7434
7434
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let positionInCodon = 0;
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7435
7435
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for (let i = 0; i < basesRead; i++) {
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7436
7436
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const posInCds = i + index;
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7437
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+
const sequenceIndex = codonPositionsInCDS.includes(posInCds) ? absoluteCodonPositions[codonPositionsInCDS.indexOf(posInCds)] : positionInCdsToPositionInMainSequence(
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7438
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+
posInCds,
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7439
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+
forward,
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7440
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+
translationRange,
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7441
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+
originalSequenceStringLength
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7442
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+
);
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7437
7443
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if (codonPositionsInCDS.includes(posInCds)) {
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7438
7444
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aminoAcidDataForEachBaseOfDNA.push({
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7439
7445
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aminoAcid,
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7440
7446
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positionInCodon,
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7441
7447
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aminoAcidIndex,
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7442
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-
sequenceIndex
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7448
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+
sequenceIndex,
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7443
7449
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codonRange,
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7444
7450
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fullCodon: codonPositionsInCDS.length === 3
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7445
7451
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});
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@@ -7449,12 +7455,7 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
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7449
7455
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aminoAcid: null,
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7450
7456
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positionInCodon: null,
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7451
7457
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aminoAcidIndex: null,
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7452
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-
sequenceIndex
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7453
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-
posInCds,
|
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7454
|
-
forward,
|
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7455
|
-
translationRange,
|
|
7456
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-
originalSequenceStringLength
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7457
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-
),
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7458
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+
sequenceIndex,
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7458
7459
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codonRange: null,
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7459
7460
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fullCodon: null
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7460
7461
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});
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package/index.umd.cjs
CHANGED
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@@ -7438,12 +7438,18 @@ var __async = (__this, __arguments, generator) => {
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7438
7438
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let positionInCodon = 0;
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7439
7439
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for (let i2 = 0; i2 < basesRead; i2++) {
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7440
7440
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const posInCds = i2 + index;
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7441
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+
const sequenceIndex = codonPositionsInCDS.includes(posInCds) ? absoluteCodonPositions[codonPositionsInCDS.indexOf(posInCds)] : positionInCdsToPositionInMainSequence(
|
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7442
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+
posInCds,
|
|
7443
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+
forward,
|
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7444
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+
translationRange,
|
|
7445
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+
originalSequenceStringLength
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7446
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+
);
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7441
7447
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if (codonPositionsInCDS.includes(posInCds)) {
|
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7442
7448
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aminoAcidDataForEachBaseOfDNA.push({
|
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7443
7449
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aminoAcid,
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7444
7450
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positionInCodon,
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7445
7451
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aminoAcidIndex,
|
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7446
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-
sequenceIndex
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7452
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+
sequenceIndex,
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7447
7453
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codonRange,
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7448
7454
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fullCodon: codonPositionsInCDS.length === 3
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7449
7455
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});
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@@ -7453,12 +7459,7 @@ var __async = (__this, __arguments, generator) => {
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7453
7459
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aminoAcid: null,
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7454
7460
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positionInCodon: null,
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7455
7461
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aminoAcidIndex: null,
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7456
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-
sequenceIndex
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|
7457
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-
posInCds,
|
|
7458
|
-
forward,
|
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7459
|
-
translationRange,
|
|
7460
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-
originalSequenceStringLength
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7461
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-
),
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7462
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+
sequenceIndex,
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7462
7463
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codonRange: null,
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7463
7464
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fullCodon: null
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7464
7465
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});
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package/package.json
CHANGED
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@@ -1,9 +1,10 @@
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1
1
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{
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2
2
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"name": "@teselagen/bio-parsers",
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3
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-
"version": "0.4.
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3
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+
"version": "0.4.23-beta.1",
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4
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+
"type": "module",
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4
5
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"dependencies": {
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5
6
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"@teselagen/sequence-utils": "0.3.27",
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6
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-
"@teselagen/range-utils": "0.3.
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7
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+
"@teselagen/range-utils": "0.3.10",
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7
8
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"@gmod/gff": "^1.2.1",
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8
9
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"buffer": "^6.0.3",
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9
10
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"bufferpack": "^0.0.6",
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@@ -14,5 +15,11 @@
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14
15
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"string_decoder": "^1.3.0",
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15
16
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"validate.io-nonnegative-integer-array": "^1.0.1"
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16
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},
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18
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+
"exports": {
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19
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".": {
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20
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"import": "./index.es.js",
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21
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"require": "./index.cjs.js"
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22
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+
}
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23
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+
},
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17
24
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"license": "MIT"
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18
25
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}
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