@teselagen/bio-parsers 0.4.16 → 0.4.18

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/bio-parsers",
-  "version": "0.4.16",
+  "version": "0.4.18",
   "dependencies": {
     "@teselagen/sequence-utils": "0.3.24",
     "@teselagen/range-utils": "0.3.7",

package/src/genbankToJson.js

@@ -577,6 +577,7 @@ function genbankToJson(string, options = {}) {
         const feat = getCurrentFeature();
         feat.type = key;
         feat.strand = strand;
+        feat.forward = strand === 1;
         feat.locations = feat.locations.concat(
           parseFeatureLocation(
             val,

package/src/geneiousXmlToJson.js

@@ -7,8 +7,8 @@ import {
 } from "./utils/searchWholeObjByName";
 
 import { XMLParser } from "fast-xml-parser";
-import { forEach, flatMap } from "lodash";
-import { filter } from "lodash";
+import { forEach, flatMap } from "lodash-es";
+import { filter } from "lodash-es";
 
 //Here's what should be in the callback:
 // {

package/src/gffToJson.js

@@ -1,5 +1,5 @@
 import gff from "@gmod/gff";
-import { get } from "lodash";
+import { get } from "lodash-es";
 
 function gffToJson(string) {
   const arrayOfThings = gff.parseStringSync(string);

package/src/jbeiXmlToJson.js

@@ -2,7 +2,7 @@
 
 import validateSequenceArray from "./utils/validateSequenceArray";
 import { XMLParser } from "fast-xml-parser";
-import { filter } from "lodash";
+import { filter } from "lodash-es";
 
 //Here's what should be in the callback:
 // {

package/src/jsonToGenbank.js

@@ -1,5 +1,5 @@
 /* eslint-disable no-var*/
-import { get, cloneDeep, map, each, isObject, flatMap } from "lodash";
+import { get, cloneDeep, map, each, isObject, flatMap } from "lodash-es";
 import color from "color";
 
 import pragmasAndTypes from "./utils/pragmasAndTypes.js";
@@ -343,8 +343,8 @@ function featureToGenbankString(feat, options) {
       feat.arrowheadType.toUpperCase() === "BOTH"
         ? "BOTH"
         : feat.arrowheadType.toUpperCase() === "NONE"
-        ? "NONE"
-        : undefined;
+          ? "NONE"
+          : undefined;
 
     if (valToAdd) addToNotes(feat, "direction", valToAdd);
   }

package/src/jsonToJsonString.js

@@ -1,4 +1,4 @@
-import { omit } from "lodash";
+import { omit } from "lodash-es";
 
 import cleanUpTeselagenJsonForExport from "./utils/cleanUpTeselagenJsonForExport";
 import { tidyUpSequenceData } from "@teselagen/sequence-utils";

package/src/sbolXmlToJson.js

@@ -6,7 +6,7 @@ import searchWholeObjByName, {
 } from "./utils/searchWholeObjByName";
 
 import { XMLParser } from "fast-xml-parser";
-import { flatMap, get } from "lodash";
+import { flatMap, get } from "lodash-es";
 
 //Here's what should be in the callback:
 // {

package/src/snapgeneToJson.js

@@ -9,7 +9,7 @@ import getArrayBufferFromFile from "./utils/getArrayBufferFromFile";
 import createInitialSequence from "./utils/createInitialSequence";
 import validateSequenceArray from "./utils/validateSequenceArray";
 import flattenSequenceArray from "./utils/flattenSequenceArray";
-import { get } from "lodash";
+import { get } from "lodash-es";
 import { XMLParser } from "fast-xml-parser";
 import extractFileExtension from "./utils/extractFileExtension";
 

package/src/utils/cleanUpTeselagenJsonForExport.js

@@ -1,4 +1,4 @@
-import { cloneDeep, forEach } from "lodash";
+import { cloneDeep, forEach } from "lodash-es";
 
 export default function cleanUpTeselagenJsonForExport(tgJson) {
   const seqData = cloneDeep(tgJson);

package/src/utils/searchWholeObjByName.js

@@ -1,6 +1,6 @@
 //tnr: taken from https://github.com/angus-c/waldojs (not using waldojs as it is not being maintained and pulled in nasty babel runtime transforms)
 /* eslint-disable eqeqeq */
-import { isEqual } from "lodash";
+import { isEqual } from "lodash-es";
 
 class Match {
   constructor(props) {

package/src/utils/validateSequence.js

@@ -4,10 +4,10 @@ import {
   filterSequenceString,
   guessIfSequenceIsDnaAndNotProtein
 } from "@teselagen/sequence-utils";
-import { filter, some, upperFirst } from "lodash";
+import { filter, some, upperFirst } from "lodash-es";
 import pragmasAndTypes from "./pragmasAndTypes.js";
-import { forEach } from "lodash";
-import { map } from "lodash";
+import { forEach } from "lodash-es";
+import { map } from "lodash-es";
 import { unmangleUrls } from "./unmangleUrls";
 import { reformatName } from "./NameUtils.js";