@teselagen/bio-parsers 0.3.3 → 0.3.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.js +5 -0
- package/index.mjs +5 -0
- package/index.umd.js +5 -0
- package/package.json +3 -3
- package/src/genbankToJson.js +4 -0
- package/src/utils/validateSequence.js +1 -0
package/index.js
CHANGED
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@@ -19363,6 +19363,7 @@ function validateSequence(sequence, options = {}) {
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19363
19363
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}
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19364
19364
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if (temp !== sequence.sequence) {
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19365
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sequence.type = "RNA";
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19366
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+
sequence.sequence = temp;
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19366
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} else {
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19367
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sequence.type = "DNA";
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19368
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}
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@@ -19950,6 +19951,9 @@ function genbankToJson(string, options = {}) {
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19950
19951
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if (item.match(/ss-dna/i)) {
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options.isSingleStrandedDNA = true;
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}
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19954
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+
if (item.match(/rna/i)) {
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19955
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options.isRna = true;
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19956
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}
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if (item.match(/rna/i) && !item.match(/ss-rna/i)) {
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options.isDoubleStrandedRNA = true;
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}
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@@ -19964,6 +19968,7 @@ function genbankToJson(string, options = {}) {
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result.parsedSequence.gbDivision = gbDivision;
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result.parsedSequence.sequenceTypeFromLocus = options.sequenceTypeFromLocus;
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result.parsedSequence.isSingleStrandedDNA = options.isSingleStrandedDNA;
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19971
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+
result.parsedSequence.isRna = options.isRna;
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result.parsedSequence.isDoubleStrandedRNA = options.isDoubleStrandedRNA;
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result.parsedSequence.date = date;
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result.parsedSequence.circular = circular;
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package/index.mjs
CHANGED
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@@ -19361,6 +19361,7 @@ function validateSequence(sequence, options = {}) {
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19361
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}
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19362
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if (temp !== sequence.sequence) {
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19363
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sequence.type = "RNA";
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19364
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sequence.sequence = temp;
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19364
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} else {
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19365
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sequence.type = "DNA";
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19366
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}
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@@ -19948,6 +19949,9 @@ function genbankToJson(string, options = {}) {
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if (item.match(/ss-dna/i)) {
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options.isSingleStrandedDNA = true;
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19951
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}
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19952
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if (item.match(/rna/i)) {
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19953
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options.isRna = true;
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}
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19951
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if (item.match(/rna/i) && !item.match(/ss-rna/i)) {
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options.isDoubleStrandedRNA = true;
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}
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@@ -19962,6 +19966,7 @@ function genbankToJson(string, options = {}) {
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19962
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result.parsedSequence.gbDivision = gbDivision;
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result.parsedSequence.sequenceTypeFromLocus = options.sequenceTypeFromLocus;
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result.parsedSequence.isSingleStrandedDNA = options.isSingleStrandedDNA;
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19969
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result.parsedSequence.isRna = options.isRna;
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result.parsedSequence.isDoubleStrandedRNA = options.isDoubleStrandedRNA;
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result.parsedSequence.date = date;
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result.parsedSequence.circular = circular;
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package/index.umd.js
CHANGED
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@@ -19365,6 +19365,7 @@ var __async = (__this, __arguments, generator) => {
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19365
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}
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19366
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if (temp !== sequence.sequence) {
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19367
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sequence.type = "RNA";
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19368
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sequence.sequence = temp;
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} else {
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sequence.type = "DNA";
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}
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@@ -19952,6 +19953,9 @@ var __async = (__this, __arguments, generator) => {
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if (item.match(/ss-dna/i)) {
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options.isSingleStrandedDNA = true;
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}
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19956
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if (item.match(/rna/i)) {
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19957
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options.isRna = true;
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19958
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}
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19955
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if (item.match(/rna/i) && !item.match(/ss-rna/i)) {
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options.isDoubleStrandedRNA = true;
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}
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@@ -19966,6 +19970,7 @@ var __async = (__this, __arguments, generator) => {
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result.parsedSequence.gbDivision = gbDivision;
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result.parsedSequence.sequenceTypeFromLocus = options.sequenceTypeFromLocus;
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result.parsedSequence.isSingleStrandedDNA = options.isSingleStrandedDNA;
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result.parsedSequence.isRna = options.isRna;
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result.parsedSequence.isDoubleStrandedRNA = options.isDoubleStrandedRNA;
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result.parsedSequence.date = date;
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result.parsedSequence.circular = circular;
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package/package.json
CHANGED
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@@ -1,10 +1,10 @@
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1
1
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{
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"name": "@teselagen/bio-parsers",
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-
"version": "0.3.
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3
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+
"version": "0.3.4",
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4
4
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"type": "commonjs",
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5
5
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"dependencies": {
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6
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-
"@teselagen/sequence-utils": "0.3.
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7
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-
"@teselagen/range-utils": "0.3.
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6
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"@teselagen/sequence-utils": "0.3.4",
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7
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"@teselagen/range-utils": "0.3.4",
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"@gmod/gff": "^1.2.1",
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"buffer": "^6.0.3",
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"bufferpack": "^0.0.6",
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package/src/genbankToJson.js
CHANGED
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@@ -347,6 +347,9 @@ function genbankToJson(string, options = {}) {
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347
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if (item.match(/ss-dna/i)) {
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options.isSingleStrandedDNA = true;
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}
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if (item.match(/rna/i)) {
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351
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options.isRna = true;
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352
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}
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if (item.match(/rna/i) && !item.match(/ss-rna/i)) {
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options.isDoubleStrandedRNA = true;
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}
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@@ -371,6 +374,7 @@ function genbankToJson(string, options = {}) {
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result.parsedSequence.gbDivision = gbDivision;
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result.parsedSequence.sequenceTypeFromLocus = options.sequenceTypeFromLocus;
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result.parsedSequence.isSingleStrandedDNA = options.isSingleStrandedDNA;
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377
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result.parsedSequence.isRna = options.isRna;
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result.parsedSequence.isDoubleStrandedRNA = options.isDoubleStrandedRNA;
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result.parsedSequence.date = date;
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result.parsedSequence.circular = circular;
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