@teselagen/bio-parsers 0.1.24 → 0.1.26
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.js +9 -2
- package/index.mjs +9 -2
- package/index.umd.js +9 -2
- package/package.json +4 -4
package/index.js
CHANGED
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@@ -41937,7 +41937,13 @@ async function snapgeneToJson(fileObj, options = {}) {
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41937
41937
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data.sequence = await read(size, "utf8");
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41938
41938
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} else if (ord(next_byte) === 10) {
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41939
41939
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// # READ THE FEATURES
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41940
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-
const strand_dict = {
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41940
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+
const strand_dict = {
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41941
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+
// [strand, arrowheadType]
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41942
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0: [1, "NONE"], // non-directional feature (in that case, the attribute is generally absent altogether)
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41943
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+
1: [1, "TOP"], // forward strand
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41944
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+
2: [-1, "BOTTOM"], // reverse strand
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41945
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+
3: [1, "BOTH"], // bi-directional feature
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41946
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};
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41941
41947
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const xml = await read(block_size, "utf8");
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41942
41948
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const b = new fxp.XMLParser({
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41943
41949
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ignoreAttributes: false,
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@@ -41972,7 +41978,8 @@ async function snapgeneToJson(fileObj, options = {}) {
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41972
41978
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name,
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41973
41979
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type,
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41974
41980
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...(locations?.length > 1 && { locations }),
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41975
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-
strand: strand_dict[directionality],
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41981
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+
strand: directionality ? strand_dict[directionality][0] : 1,
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41982
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+
arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
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41976
41983
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start: maxStart,
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41977
41984
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end: maxEnd,
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41978
41985
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// color,
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package/index.mjs
CHANGED
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@@ -41933,7 +41933,13 @@ async function snapgeneToJson(fileObj, options = {}) {
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41933
41933
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data.sequence = await read(size, "utf8");
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41934
41934
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} else if (ord(next_byte) === 10) {
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41935
41935
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// # READ THE FEATURES
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41936
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-
const strand_dict = {
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41936
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+
const strand_dict = {
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41937
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+
// [strand, arrowheadType]
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41938
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+
0: [1, "NONE"], // non-directional feature (in that case, the attribute is generally absent altogether)
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41939
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+
1: [1, "TOP"], // forward strand
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41940
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+
2: [-1, "BOTTOM"], // reverse strand
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41941
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+
3: [1, "BOTH"], // bi-directional feature
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41942
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};
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41937
41943
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const xml = await read(block_size, "utf8");
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41938
41944
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const b = new fxp.XMLParser({
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41939
41945
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ignoreAttributes: false,
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@@ -41968,7 +41974,8 @@ async function snapgeneToJson(fileObj, options = {}) {
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41968
41974
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name,
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41969
41975
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type,
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41970
41976
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...(locations?.length > 1 && { locations }),
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41971
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-
strand: strand_dict[directionality],
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41977
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+
strand: directionality ? strand_dict[directionality][0] : 1,
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41978
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+
arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
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41972
41979
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start: maxStart,
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41973
41980
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end: maxEnd,
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41974
41981
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// color,
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package/index.umd.js
CHANGED
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@@ -41939,7 +41939,13 @@
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41939
41939
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data.sequence = await read(size, "utf8");
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41940
41940
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} else if (ord(next_byte) === 10) {
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41941
41941
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// # READ THE FEATURES
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41942
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-
const strand_dict = {
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41942
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+
const strand_dict = {
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41943
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+
// [strand, arrowheadType]
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41944
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+
0: [1, "NONE"], // non-directional feature (in that case, the attribute is generally absent altogether)
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41945
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+
1: [1, "TOP"], // forward strand
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41946
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+
2: [-1, "BOTTOM"], // reverse strand
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41947
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+
3: [1, "BOTH"], // bi-directional feature
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41948
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+
};
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41943
41949
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const xml = await read(block_size, "utf8");
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41944
41950
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const b = new fxp.XMLParser({
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41945
41951
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ignoreAttributes: false,
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@@ -41974,7 +41980,8 @@
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41974
41980
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name,
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41975
41981
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type,
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41976
41982
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...(locations?.length > 1 && { locations }),
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41977
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-
strand: strand_dict[directionality],
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41983
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+
strand: directionality ? strand_dict[directionality][0] : 1,
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41984
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+
arrowheadType: directionality ? strand_dict[directionality][1] : "NONE",
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41978
41985
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start: maxStart,
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41979
41986
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end: maxEnd,
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41980
41987
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// color,
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package/package.json
CHANGED
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@@ -1,10 +1,10 @@
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1
1
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{
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2
2
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"name": "@teselagen/bio-parsers",
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3
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-
"version": "0.1.
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4
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-
"type": "
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3
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+
"version": "0.1.26",
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4
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+
"type": "commonjs",
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5
5
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"dependencies": {
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6
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-
"@teselagen/sequence-utils": "0.1.
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7
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-
"@teselagen/range-utils": "0.1.
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6
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+
"@teselagen/sequence-utils": "0.1.21",
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7
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"@teselagen/range-utils": "0.1.20",
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8
8
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"@gmod/gff": "^1.2.1",
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9
9
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"bson-objectid": "2.0.4",
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10
10
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"buffer": "^6.0.3",
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