@teselagen/bio-parsers 0.1.1

package/jbeiXmlToJson.d.ts

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+export default jbeiXmlToJson;
+declare function jbeiXmlToJson(string: any, options: any): Promise<any>;

package/jsonToBed.d.ts

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+export default jsonToBed;
+declare function jsonToBed(jsonSequence: any, options?: {}): string;

package/jsonToFasta.d.ts

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+export default function jsonToFasta(jsonSequence: any, options: any): string;

package/jsonToGenbank.d.ts

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+export default function _default(_serSeq: any, options: any): string | false;

package/jsonToJsonString.d.ts

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+/**
+ * @param {*} incomingJson
+ * @returns a sequence json cleaned up and converted to a string with extranous fields ommited
+ */
+export default function jsonToJsonString(incomingJson: any): string;

package/package.json

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+{
+  "name": "@teselagen/bio-parsers",
+  "version": "0.1.1",
+  "type": "commonjs",
+  "dependencies": {
+    "@gmod/gff": "^1.2.1",
+    "buffer": "^6.0.3",
+    "bufferpack": "^0.0.6",
+    "color": "^4.2.3",
+    "fast-xml-parser": "^4.0.9",
+    "fflate": "^0.7.4",
+    "lodash": "^4.17.21",
+    "string_decoder": "^1.3.0",
+    "validate.io-nonnegative-integer-array": "^1.0.1"
+  }
+}

package/sbolXmlToJson.d.ts

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+export default sbolXmlToJson;
+declare function sbolXmlToJson(string: any, options: any): Promise<any>;

package/snapgeneToJson.d.ts

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+export default snapgeneToJson;
+declare function snapgeneToJson(fileObj: any, options?: {}): Promise<any>;

package/utils/NameUtils.d.ts

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+export function reformatName(pName: string): string;

package/utils/cleanUpTeselagenJsonForExport.d.ts

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+export default function cleanUpTeselagenJsonForExport(tgJson: any): any;

package/utils/constants.d.ts

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+export const untitledSequenceName: "Untitled Sequence";
+export namespace gbDivisions {
+    const PRI: boolean;
+    const ROD: boolean;
+    const MAM: boolean;
+    const VRT: boolean;
+    const INV: boolean;
+    const PLN: boolean;
+    const BCT: boolean;
+    const VRL: boolean;
+    const PHG: boolean;
+    const SYN: boolean;
+    const UNA: boolean;
+    const EST: boolean;
+    const PAT: boolean;
+    const STS: boolean;
+    const GSS: boolean;
+    const HTG: boolean;
+    const HTC: boolean;
+    const ENV: boolean;
+    const CON: boolean;
+}

package/utils/convertOldSequenceDataToNewDataType.d.ts

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+export default function convertOldSequenceDataToNewDataType(oldTeselagenJson: any, opts: any): void;

package/utils/createInitialSequence.d.ts

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+export default function createInitialSequence(options: any): {
+    messages: never[];
+    success: boolean;
+    parsedSequence: {
+        features: never[];
+        name: any;
+        sequence: string;
+    };
+};

package/utils/extractFileExtension.d.ts

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+export default function extractFileExtension(name: any): string;

package/utils/flattenSequenceArray.d.ts

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+export default function flattenSequenceArray(parsingResultArray: any, opts: any): any;

package/utils/getArrayBufferFromFile.d.ts

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+export default function getArrayBufferFromFile(file: any): ArrayBuffer | Promise<any>;

package/utils/isBrowser.d.ts

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+declare const _default: boolean;
+export default _default;

package/utils/parseUracilFeatures.d.ts

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+export default function parseUracilFeatures(sequenceBps: any, featureList?: any[]): any;

package/utils/pragmasAndTypes.d.ts

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+declare const _default: ({
+    type: string;
+    pragma?: undefined;
+} | {
+    pragma: string;
+    type: string;
+})[];
+export default _default;

package/utils/searchWholeObjByName.d.ts

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+export default function searchWholeObjByName(what: any, where: any): Match[];
+export function searchWholeObjByNameSimple(what: any, where: any): any;
+export function searchWholeObjByNameSimpleArray(what: any, where: any): any;
+declare class Match {
+    constructor(props: any);
+    value: any;
+    toString(): string;
+    logValue(): any;
+    log(): void;
+}
+export {};

package/utils/splitStringIntoLines.d.ts

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+export default function splitStringIntoLines(string: any): any;

package/utils/unmangleUrls.d.ts

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+export function unmangleUrls(str: any): any;
+export function mangleOrStripUrls(str: any, { mangleUrls, doNotMangleOrStripUrls }?: {
+    mangleUrls: any;
+    doNotMangleOrStripUrls: any;
+}): any;

package/utils/validateSequence.d.ts

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+/**
+ * validation and sanitizing of our teselagen sequence data type
+ * @param  {object} sequence Our teselagen sequence data type
+ * @return response         {
+    validatedAndCleanedSequence: {},
+    messages: [],
+  };
+ */
+export default function validateSequence(sequence: object, options?: {}): {
+    validatedAndCleanedSequence: {};
+    messages: never[];
+};

package/utils/validateSequenceArray.d.ts

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+export default function validateSequenceArray(parsingResultArray: any, options: any): any;