@tenphi/akno-core 0.2.0 → 0.4.0

package/dist/store/migrations.js

@@ -1,9 +1,9 @@
 /**
- * One SQLite file. Deleting it costs one re-index and no data — that
- * property is the design, and it is why nothing here is a source of truth.
- * The journal, live maintenance plans, replayable managed-item source quotes, and content-safe run receipts are
- * the durable exceptions. The journal keeps prior bytes for undo; a sealed plan keeps exact proposed bytes so a
- * decision survives a restart and never has to regenerate a possibly different rewrite; one bounded exact
+ * One SQLite file holds both reproducible projections and deliberately durable workflow state.
+ * `akno index --rebuild` refreshes the former in place; deleting this file loses the journal,
+ * live maintenance plans, replayable managed-item source quotes, retain receipts and recovery state.
+ * The journal keeps prior bytes for undo; a sealed plan keeps exact proposed bytes so a decision
+ * survives a restart and never has to regenerate a possibly different rewrite; one bounded exact
  * quote lets a generated sentence be checked later; the receipt explains the lifecycle around them.
  *
  * The first entry is the canonical 0.1.0 schema, compacted from historical versions
@@ -12,7 +12,7 @@
  * Upgrade code capability-checks durable tables and columns so databases created before
  * or after the compaction converge on the same schema.
  */
-export const SCHEMA_VERSION = 33;
+export const SCHEMA_VERSION = 34;
 export const MAINTENANCE_PLANS_MIGRATION_INDEX = 1;
 export const MAINTENANCE_EVIDENCE_MIGRATION_INDEX = 2;
 export const CONFLICT_VERDICTS_MIGRATION_INDEX = 3;
@@ -39,6 +39,7 @@ export const MAINTENANCE_REVISION_ACTOR_MIGRATION_INDEX = 23;
 export const MAINTENANCE_ACTION_RECEIPTS_MIGRATION_INDEX = 24;
 export const MAINTENANCE_RECOVERY_STATE_MIGRATION_INDEX = 25;
 export const RETAIN_RECEIPTS_MIGRATION_INDEX = 26;
+export const CHANGE_FILE_HASHES_MIGRATION_INDEX = 27;
 export const MIGRATIONS = [
     // ── 1. The schema as of 0.1.0 ─────────────────────────────────────────────
     `
@@ -271,8 +272,8 @@ export const MIGRATIONS = [
   CREATE INDEX changes_at ON changes(at DESC);
 
   -- One row per file the change touched, in application order. 'before' holds the
-  -- previous bytes rather than a pointer to them, which is why undo survives a
-  -- full rebuild of every other table: only the journal is irreplaceable.
+  -- previous bytes rather than a pointer to them, which is why undo survives an
+  -- in-place rebuild of reproducible projections.
   CREATE TABLE change_files (
     change_id  TEXT NOT NULL REFERENCES changes(id) ON DELETE CASCADE,
     ord        INTEGER NOT NULL,
@@ -940,6 +941,13 @@ export const MIGRATIONS = [
   CREATE INDEX retain_supports_memory
     ON retain_supports(memory_id, receipt_fingerprint);
   `,
+    // Undo is a compare-and-swap over the knowledge base. Text rows can derive these hashes from
+    // their journaled bytes, while binary deletes and renames need the exact post-change digest
+    // recorded here so a later edit is never mistaken for the file Akno originally changed.
+    `
+  ALTER TABLE change_files ADD COLUMN before_hash TEXT;
+  ALTER TABLE change_files ADD COLUMN after_hash TEXT;
+  `,
 ];
 /**
  * The vector table is created separately: its dimension is fixed at creation

package/dist/store/migrations.js.map

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package/dist/watch/watcher.d.ts

@@ -9,10 +9,10 @@ export interface WatcherEvents {
     onError?: (error: Error) => void;
 }
 /**
- * **FSEvents, not polling.** Node's recursive `fs.watch` uses FSEvents on
- * macOS: native, cheap, and it reports renames as renames.
+ * **Native events, not polling.** Node's recursive `fs.watch` uses the host
+ * watcher: native, cheap, and able to report renames.
  *
- * But FSEvents coalesces under load and can drop events after a sleep/wake or a
+ * But filesystem events coalesce under load and can drop events after a sleep/wake or a
  * large sync, so a **periodic hash sweep is the backstop.** Watching alone is not
  * a correctness guarantee; hashing is. At ~10ms for a typical knowledge base the
  * sweep can run every few minutes and cost nothing.

package/dist/watch/watcher.js

@@ -1,10 +1,10 @@
 import fs from 'node:fs';
 import path from 'node:path';
 /**
- * **FSEvents, not polling.** Node's recursive `fs.watch` uses FSEvents on
- * macOS: native, cheap, and it reports renames as renames.
+ * **Native events, not polling.** Node's recursive `fs.watch` uses the host
+ * watcher: native, cheap, and able to report renames.
  *
- * But FSEvents coalesces under load and can drop events after a sleep/wake or a
+ * But filesystem events coalesce under load and can drop events after a sleep/wake or a
  * large sync, so a **periodic hash sweep is the backstop.** Watching alone is not
  * a correctness guarantee; hashing is. At ~10ms for a typical knowledge base the
  * sweep can run every few minutes and cost nothing.
@@ -32,7 +32,7 @@ export class Watcher {
         try {
             this.watcher = fs.watch(this.#config.aknoPath, { recursive: true, persistent: true }, (_type, filename) => {
                 if (!filename) {
-                    // A null filename means FSEvents coalesced and cannot say what moved.
+                    // A null filename means the watcher coalesced and cannot say what moved.
                     // The only correct response is to treat the whole tree as suspect.
                     this.dirty = true;
                     this.schedule();
@@ -101,7 +101,7 @@ export class Watcher {
     schedule() {
         if (this.debounceTimer)
             clearTimeout(this.debounceTimer);
-        // FSEvents coalesces, but an editor still produces a write storm on save.
+        // Native watchers coalesce, but an editor still produces a write storm on save.
         this.debounceTimer = setTimeout(() => void this.flush(), this.#config.watch.debounceMs);
     }
     async flush(options = {}) {

package/dist/watch/watcher.js.map

@@ -1 +1 @@
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package/dist/write/journal.d.ts

@@ -1,13 +1,9 @@
 import type { Store } from '../store/db.ts';
 import { type WriteResult } from './atomic.ts';
 /**
- * **The journal is the only irreplaceable table.** Everything else is
- * derived from the Markdown and rebuilt by `akno index`; this holds the previous
- * bytes, and there is nowhere else to get them.
- *
- * It records content, not pointers — so `undo` still works after
- * `rm akno.db && akno index` has thrown away every fact id the change might
- * otherwise have referenced — which is why a fact id is never stored here.
+ * The journal is durable state: it holds previous bytes, and there is nowhere else
+ * to get them. `akno index --rebuild` deliberately preserves it while refreshing
+ * reproducible projections, which is why a fact id is never stored here.
  *
  * The unit is a **change**, not a file. One `write` can touch a page, the event
  * ledger and an attachment; `undo` reverses all of them or none, because a page
@@ -59,7 +55,7 @@ export declare class Journal {
         files: ChangeFile[];
     }): string;
     /**
-     * Reverses a change: every file back to its previous bytes, in reverse order.
+     * Reverses a change only when every file still has the exact post-change state.
      *
      * Reverse order matters for a move — the change created the destination and
      * deleted the source, so undoing destination-first leaves the source free to be

package/dist/write/journal.d.ts.map

@@ -1 +1 @@
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package/dist/write/journal.js

@@ -1,7 +1,8 @@
+import fs from 'node:fs';
 import fsp from 'node:fs/promises';
 import path from 'node:path';
 import { AknoError } from '@tenphi/akno-protocol';
-import { newPrefixedId } from "../store/ids.js";
+import { newPrefixedId, sha256 } from "../store/ids.js";
 import { restoreFile } from "./atomic.js";
 export class Journal {
     #store;
@@ -26,16 +27,30 @@ export class Journal {
             this.#store.db
                 .prepare('INSERT INTO changes(id, at, actor, op, summary, status) VALUES(?, ?, ?, ?, ?, ?)')
                 .run(changeId, now, input.actor, input.op, input.summary, 'applied');
-            const insert = this.#store.db.prepare(`INSERT INTO change_files(change_id, ord, rel_path, action, before, after, snapshot, moved_to)
-         VALUES(?, ?, ?, ?, ?, ?, ?, ?)`);
+            const insert = this.#store.db.prepare(`INSERT INTO change_files(
+           change_id, ord, rel_path, action, before, after, snapshot, moved_to,
+           before_hash, after_hash
+         ) VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
             input.files.forEach((file, index) => {
-                insert.run(changeId, index, file.relPath, file.action, file.before, file.after, file.snapshot ?? null, file.movedTo ?? null);
+                const beforeHash = file.before !== null
+                    ? sha256(file.before)
+                    : file.snapshot
+                        ? hashFileIfPresent(path.join(this.#trashDir, file.snapshot))
+                        : null;
+                const afterHash = file.after !== null
+                    ? sha256(file.after)
+                    : file.movedTo
+                        ? hashFileIfPresent(path.join(this.#aknoPath, file.movedTo))
+                        : file.action === 'created'
+                            ? hashFileIfPresent(path.join(this.#aknoPath, file.relPath))
+                            : null;
+                insert.run(changeId, index, file.relPath, file.action, file.before, file.after, file.snapshot ?? null, file.movedTo ?? null, beforeHash, afterHash);
             });
         });
         return changeId;
     }
     /**
-     * Reverses a change: every file back to its previous bytes, in reverse order.
+     * Reverses a change only when every file still has the exact post-change state.
      *
      * Reverse order matters for a move — the change created the destination and
      * deleted the source, so undoing destination-first leaves the source free to be
@@ -52,68 +67,166 @@ export class Journal {
         const files = this.#store.db
             .prepare('SELECT * FROM change_files WHERE change_id = ? ORDER BY ord DESC')
             .all(changeId);
+        const conflicts = await this.#undoConflicts(files);
+        if (conflicts.length > 0) {
+            throw new AknoError('conflict', `cannot undo ${changeId}: ${conflicts.length} file${conflicts.length === 1 ? '' : 's'} no longer match the applied change`, {
+                reason: 'stale_undo',
+                conflicts,
+                recovery: 'Review the current files, restore the expected post-change state, then retry undo; no files were changed.',
+            });
+        }
         const restored = [];
         const removed = [];
         const reversedMoves = [];
-        for (const file of files) {
-            if (file.moved_to) {
-                // The change was a rename, so its reversal is the rename back. Nothing was created
-                // and nothing was destroyed, which is why this case cannot go through `restoreFile`.
-                const from = path.join(this.#aknoPath, file.moved_to);
-                const target = path.join(this.#aknoPath, file.rel_path);
-                await fsp.mkdir(path.dirname(target), { recursive: true });
-                let reversed = true;
-                await fsp.rename(from, target).catch(async (err) => {
-                    // Already gone is not a reason to abandon the rest of the reversal — the file was
-                    // moved again, or removed, since. Everything else still goes back.
-                    if (err.code !== 'ENOENT')
-                        throw err;
-                    reversed = false;
-                });
-                if (reversed)
+        const applied = [];
+        try {
+            for (const file of files) {
+                const postBytes = await this.#rollbackBytes(file);
+                await this.#reverseFile(file);
+                applied.push({ file, postBytes });
+                if (file.moved_to)
                     reversedMoves.push({ from: file.moved_to, to: file.rel_path });
-                restored.push(file.rel_path);
-                continue;
+                if (!file.moved_to && !file.snapshot && file.before === null)
+                    removed.push(file.rel_path);
+                else
+                    restored.push(file.rel_path);
             }
-            if (file.snapshot) {
-                // A binary: the bytes are in trash, not in the journal.
-                const source = path.join(this.#trashDir, file.snapshot);
-                const target = path.join(this.#aknoPath, file.rel_path);
-                await fsp.mkdir(path.dirname(target), { recursive: true });
-                await fsp.copyFile(source, target);
+            this.#store.transaction(() => {
+                // A document row carries retained extraction and provenance that a structural re-index cannot
+                // always reproduce without another model call. Follow successful attachment renames back before
+                // the scanner runs, just as the forward move follows them, rather than deleting and recreating
+                // the row from its content-derived id.
+                if (reversedMoves.length > 0) {
+                    const moveDocument = this.#store.db.prepare('UPDATE OR IGNORE documents SET rel_path = ? WHERE rel_path = ?');
+                    const moveRenders = this.#store.db.prepare('UPDATE documents SET renders = ? WHERE renders = ?');
+                    const moveGroup = this.#store.db.prepare('UPDATE documents SET group_key = ? WHERE group_key = ?');
+                    for (const move of reversedMoves)
+                        moveDocument.run(move.to, move.from);
+                    for (const move of reversedMoves) {
+                        moveRenders.run(move.to, move.from);
+                        moveGroup.run(move.to, move.from);
+                    }
+                }
+                this.#store.db
+                    .prepare("UPDATE changes SET status = 'undone', undone_at = ? WHERE id = ?")
+                    .run(new Date().toISOString(), changeId);
+            });
+        }
+        catch (error) {
+            await this.#restorePostChangeState(applied);
+            throw error;
+        }
+        return { restored, removed, summary: change.summary };
+    }
+    async #undoConflicts(files) {
+        const conflicts = [];
+        for (const file of files) {
+            if (file.moved_to) {
+                const sourceState = await fileState(path.join(this.#aknoPath, file.rel_path));
+                if (sourceState.kind !== 'missing') {
+                    conflicts.push({ path: file.rel_path, reason: 'move_source_occupied' });
+                }
+                const destinationState = await fileState(path.join(this.#aknoPath, file.moved_to));
+                if (destinationState.kind === 'missing') {
+                    conflicts.push({ path: file.moved_to, reason: 'move_destination_missing' });
+                }
+                else if (destinationState.kind !== 'file') {
+                    conflicts.push({ path: file.moved_to, reason: 'move_destination_not_file' });
+                }
+                else if (!file.after_hash) {
+                    conflicts.push({ path: file.moved_to, reason: 'move_destination_unverifiable' });
+                }
+                else if (destinationState.hash !== file.after_hash) {
+                    conflicts.push({ path: file.moved_to, reason: 'move_destination_modified' });
+                }
             }
             else {
-                await restoreFile(this.#aknoPath, file.rel_path, file.before);
+                const current = await fileState(path.join(this.#aknoPath, file.rel_path));
+                const expectedHash = file.after_hash ?? (file.after === null ? null : sha256(file.after));
+                if (expectedHash === null && current.kind !== 'missing') {
+                    conflicts.push({ path: file.rel_path, reason: 'expected_absent' });
+                }
+                else if (expectedHash !== null && current.kind === 'missing') {
+                    conflicts.push({ path: file.rel_path, reason: 'expected_file_missing' });
+                }
+                else if (expectedHash !== null && current.kind !== 'file') {
+                    conflicts.push({ path: file.rel_path, reason: 'expected_regular_file' });
+                }
+                else if (expectedHash !== null && current.kind === 'file' && current.hash !== expectedHash) {
+                    conflicts.push({ path: file.rel_path, reason: 'file_modified' });
+                }
+            }
+            if (file.snapshot) {
+                const snapshot = await fileState(path.join(this.#trashDir, file.snapshot));
+                const expected = file.before_hash;
+                if (snapshot.kind !== 'file') {
+                    conflicts.push({ path: file.rel_path, reason: 'recovery_snapshot_missing' });
+                }
+                else if (!expected) {
+                    // Rows created before snapshot hashes existed cannot prove that the private copy
+                    // still holds the bytes Akno removed. Restoring unknown bytes would make an old
+                    // journal entry more authoritative than the user's current knowledge base.
+                    conflicts.push({ path: file.rel_path, reason: 'recovery_snapshot_unverifiable' });
+                }
+                else if (snapshot.hash !== expected) {
+                    conflicts.push({ path: file.rel_path, reason: 'recovery_snapshot_modified' });
+                }
             }
-            // No prior content and no snapshot means the change created this file, so putting it
-            // back is deleting it. Two opposite outcomes reported under one word is one of them
-            // being reported wrongly.
-            if (!file.snapshot && file.before === null)
-                removed.push(file.rel_path);
-            else
-                restored.push(file.rel_path);
         }
-        // A document row carries retained extraction and provenance that a structural re-index cannot
-        // always reproduce without another model call. Follow successful attachment renames back before
-        // the scanner runs, just as the forward move follows them, rather than deleting and recreating
-        // the row from its content-derived id.
-        if (reversedMoves.length > 0) {
-            this.#store.transaction(() => {
-                const moveDocument = this.#store.db.prepare('UPDATE OR IGNORE documents SET rel_path = ? WHERE rel_path = ?');
-                const moveRenders = this.#store.db.prepare('UPDATE documents SET renders = ? WHERE renders = ?');
-                const moveGroup = this.#store.db.prepare('UPDATE documents SET group_key = ? WHERE group_key = ?');
-                for (const move of reversedMoves)
-                    moveDocument.run(move.to, move.from);
-                for (const move of reversedMoves) {
-                    moveRenders.run(move.to, move.from);
-                    moveGroup.run(move.to, move.from);
+        return conflicts;
+    }
+    async #reverseFile(file) {
+        if (file.moved_to) {
+            const from = path.join(this.#aknoPath, file.moved_to);
+            const target = path.join(this.#aknoPath, file.rel_path);
+            await fsp.mkdir(path.dirname(target), { recursive: true });
+            await fsp.rename(from, target);
+            return;
+        }
+        if (file.snapshot) {
+            const source = path.join(this.#trashDir, file.snapshot);
+            const target = path.join(this.#aknoPath, file.rel_path);
+            await fsp.mkdir(path.dirname(target), { recursive: true });
+            await copyFileAtomic(source, target);
+            return;
+        }
+        await restoreFile(this.#aknoPath, file.rel_path, file.before);
+    }
+    async #rollbackBytes(file) {
+        if (file.moved_to || file.snapshot || file.after !== null || !file.after_hash)
+            return null;
+        return fsp.readFile(path.join(this.#aknoPath, file.rel_path));
+    }
+    /** Roll back a partially applied reversal to the state that passed preflight. */
+    async #restorePostChangeState(applied) {
+        let rollbackError = null;
+        for (const reversal of [...applied].reverse()) {
+            const { file, postBytes } = reversal;
+            try {
+                if (file.moved_to) {
+                    const source = path.join(this.#aknoPath, file.rel_path);
+                    const destination = path.join(this.#aknoPath, file.moved_to);
+                    await fsp.mkdir(path.dirname(destination), { recursive: true });
+                    await fsp.rename(source, destination);
+                }
+                else if (postBytes) {
+                    const destination = path.join(this.#aknoPath, file.rel_path);
+                    await fsp.mkdir(path.dirname(destination), { recursive: true });
+                    await writeBytesAtomic(destination, postBytes);
+                }
+                else {
+                    await restoreFile(this.#aknoPath, file.rel_path, file.after);
                 }
+            }
+            catch (error) {
+                rollbackError ??= error;
+            }
+        }
+        if (rollbackError) {
+            throw new AknoError('internal', 'undo failed and its filesystem rollback was incomplete', {
+                reason: 'undo_rollback_failed',
             });
         }
-        this.#store.db
-            .prepare("UPDATE changes SET status = 'undone', undone_at = ? WHERE id = ?")
-            .run(new Date().toISOString(), changeId);
-        return { restored, removed, summary: change.summary };
     }
     list(limit = 20) {
         // By rowid, not by `at`: two changes in the same millisecond have identical
@@ -184,4 +297,51 @@ export function fileEntry(result) {
         after: result.after,
     };
 }
+function hashFileIfPresent(absPath) {
+    try {
+        return sha256(fs.readFileSync(absPath));
+    }
+    catch (error) {
+        if (error.code === 'ENOENT')
+            return null;
+        throw error;
+    }
+}
+async function fileState(absPath) {
+    const stat = await fsp.lstat(absPath).catch((error) => {
+        if (error.code === 'ENOENT')
+            return null;
+        throw error;
+    });
+    if (!stat)
+        return { kind: 'missing' };
+    if (!stat.isFile())
+        return { kind: 'other' };
+    return { kind: 'file', hash: sha256(await fsp.readFile(absPath)) };
+}
+async function copyFileAtomic(source, destination) {
+    await replaceAtomically(destination, (temporary) => fsp.copyFile(source, temporary));
+}
+async function writeBytesAtomic(destination, bytes) {
+    await replaceAtomically(destination, (temporary) => fsp.writeFile(temporary, bytes));
+}
+/** Keep a failed binary restore out of the user-visible path, just like page writes. */
+async function replaceAtomically(destination, populate) {
+    const temporary = `${destination}.akno.tmp`;
+    try {
+        await populate(temporary);
+        const handle = await fsp.open(temporary, 'r');
+        try {
+            await handle.sync();
+        }
+        finally {
+            await handle.close();
+        }
+        await fsp.rename(temporary, destination);
+    }
+    catch (error) {
+        await fsp.rm(temporary, { force: true }).catch(() => { });
+        throw error;
+    }
+}
 //# sourceMappingURL=journal.js.map

package/dist/write/journal.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@tenphi/akno-core",
-  "version": "0.2.0",
+  "version": "0.4.0",
   "description": "Akno — the memory layer itself: index, ops, watcher, models",
   "license": "PolyForm-Noncommercial-1.0.0",
   "type": "module",
@@ -22,13 +22,14 @@
     "sqlite-vec": "^0.1.9",
     "yaml": "^2.9.0",
     "zod": "^4.4.3",
-    "@tenphi/akno-protocol": "0.2.0"
+    "@tenphi/akno-protocol": "0.4.0"
   },
   "devDependencies": {
     "@types/better-sqlite3": "^7.6.12"
   },
   "os": [
-    "darwin"
+    "darwin",
+    "linux"
   ],
   "engines": {
     "node": ">=22.18"