@tekmidian/pai 0.5.7 → 0.6.0

package/dist/zettelkasten-cdajbnPr.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"zettelkasten-cdajbnPr.mjs","names":["MAX_CHUNKS"],"sources":["../src/zettelkasten/explore.ts","../src/zettelkasten/surprise.ts","../src/zettelkasten/converse.ts","../src/zettelkasten/health.ts","../src/zettelkasten/suggest.ts"],"sourcesContent":["import type { StorageBackend } from \"../storage/interface.js\";\nimport { dirname } from \"node:path\";\n\nexport interface ExploreOptions {\n  startNote: string;\n  depth?: number;\n  direction?: \"forward\" | \"backward\" | \"both\";\n  mode?: \"sequential\" | \"associative\" | \"all\";\n}\n\nexport interface ExploreNode {\n  path: string;\n  title: string | null;\n  depth: number;\n  linkType: \"sequential\" | \"associative\";\n  inbound: number;\n  outbound: number;\n}\n\nexport interface ExploreResult {\n  root: string;\n  nodes: ExploreNode[];\n  edges: Array<{ from: string; to: string; type: \"sequential\" | \"associative\" }>;\n  branchingPoints: string[];\n  maxDepthReached: boolean;\n}\n\nfunction classifyEdge(source: string, target: string): \"sequential\" | \"associative\" {\n  return dirname(source) === dirname(target) ? \"sequential\" : \"associative\";\n}\n\nasync function resolveStart(backend: StorageBackend, startNote: string): Promise<string | null> {\n  // Try direct lookup first\n  const files = await backend.getVaultFilesByPaths([startNote]);\n  if (files.length > 0) return files[0].vaultPath;\n\n  // Try alias lookup\n  const alias = await backend.getVaultAlias(startNote);\n  if (!alias) return null;\n\n  const canonical = await backend.getVaultFilesByPaths([alias.canonicalPath]);\n  return canonical.length > 0 ? canonical[0].vaultPath : null;\n}\n\nasync function getForwardNeighbors(backend: StorageBackend, path: string): Promise<string[]> {\n  const links = await backend.getLinksFromSource(path);\n  return links.filter(l => l.targetPath !== null).map(l => l.targetPath as string);\n}\n\nasync function getBackwardNeighbors(backend: StorageBackend, path: string): Promise<string[]> {\n  const links = await backend.getLinksToTarget(path);\n  return links.map(l => l.sourcePath);\n}\n\nasync function getFileInfo(\n  backend: StorageBackend,\n  path: string,\n): Promise<{ title: string | null; inbound: number; outbound: number }> {\n  const [files, health] = await Promise.all([\n    backend.getVaultFilesByPaths([path]),\n    backend.getVaultHealth(path),\n  ]);\n\n  return {\n    title: files[0]?.title ?? null,\n    inbound: health?.inboundCount ?? 0,\n    outbound: health?.outboundCount ?? 0,\n  };\n}\n\n/**\n * Traverse the Zettelkasten link graph using BFS, following chains of thought\n * from a starting note up to a configurable depth.\n */\nexport async function zettelExplore(backend: StorageBackend, opts: ExploreOptions): Promise<ExploreResult> {\n  const depth = Math.min(Math.max(opts.depth ?? 3, 1), 10);\n  const direction = opts.direction ?? \"both\";\n  const mode = opts.mode ?? \"all\";\n\n  const root = await resolveStart(backend, opts.startNote);\n  if (!root) {\n    return {\n      root: opts.startNote,\n      nodes: [],\n      edges: [],\n      branchingPoints: [],\n      maxDepthReached: false,\n    };\n  }\n\n  const visited = new Set<string>([root]);\n  const nodes: ExploreNode[] = [];\n  const edges: Array<{ from: string; to: string; type: \"sequential\" | \"associative\" }> = [];\n  let maxDepthReached = false;\n\n  const queue: Array<{ path: string; depth: number }> = [{ path: root, depth: 0 }];\n\n  while (queue.length > 0) {\n    const current = queue.shift()!;\n\n    if (current.depth >= depth) {\n      maxDepthReached = true;\n      continue;\n    }\n\n    const neighbors: Array<{ neighbor: string; from: string; to: string }> = [];\n\n    if (direction === \"forward\" || direction === \"both\") {\n      for (const n of await getForwardNeighbors(backend, current.path)) {\n        neighbors.push({ neighbor: n, from: current.path, to: n });\n      }\n    }\n\n    if (direction === \"backward\" || direction === \"both\") {\n      for (const n of await getBackwardNeighbors(backend, current.path)) {\n        neighbors.push({ neighbor: n, from: n, to: current.path });\n      }\n    }\n\n    for (const { neighbor, from, to } of neighbors) {\n      const edgeType = classifyEdge(from, to);\n\n      if (mode !== \"all\" && edgeType !== mode) {\n        continue;\n      }\n\n      const alreadyHasEdge = edges.some((e) => e.from === from && e.to === to);\n      if (!alreadyHasEdge) {\n        edges.push({ from, to, type: edgeType });\n      }\n\n      if (!visited.has(neighbor)) {\n        visited.add(neighbor);\n\n        const info = await getFileInfo(backend, neighbor);\n        nodes.push({\n          path: neighbor,\n          title: info.title,\n          depth: current.depth + 1,\n          linkType: edgeType,\n          inbound: info.inbound,\n          outbound: info.outbound,\n        });\n\n        queue.push({ path: neighbor, depth: current.depth + 1 });\n      }\n    }\n  }\n\n  const branchingPoints = nodes\n    .filter((n) => n.outbound > 2)\n    .map((n) => n.path);\n\n  const rootInfo = await getFileInfo(backend, root);\n  if (rootInfo.outbound > 2) {\n    branchingPoints.unshift(root);\n  }\n\n  return { root, nodes, edges, branchingPoints, maxDepthReached };\n}\n","import type { StorageBackend } from \"../storage/interface.js\";\nimport {\n  deserializeEmbedding,\n  generateEmbedding,\n  cosineSimilarity,\n} from \"../memory/embeddings.js\";\n\nexport interface SurpriseOptions {\n  referencePath: string;\n  vaultProjectId: number;\n  limit?: number;\n  minSimilarity?: number;\n  minGraphDistance?: number;\n}\n\nexport interface SurpriseResult {\n  path: string;\n  title: string | null;\n  cosineSimilarity: number;\n  graphDistance: number;\n  surpriseScore: number;\n  sharedSnippet: string;\n}\n\nconst MAX_CHUNKS = 5000;\nconst BFS_HOP_CAP = 20;\n\nasync function getFileEmbeddings(\n  backend: StorageBackend,\n  projectId: number,\n): Promise<Map<string, { embedding: Float32Array; text: string }>> {\n  const rows = await backend.getChunksWithEmbeddings(projectId, MAX_CHUNKS);\n\n  const byPath = new Map<string, { sum: Float32Array; count: number; text: string }>();\n  for (const row of rows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const entry = byPath.get(row.path);\n    if (!entry) {\n      byPath.set(row.path, { sum: new Float32Array(vec), count: 1, text: row.text });\n    } else {\n      for (let i = 0; i < vec.length; i++) {\n        entry.sum[i] += vec[i];\n      }\n      entry.count++;\n    }\n  }\n\n  const result = new Map<string, { embedding: Float32Array; text: string }>();\n  for (const [path, { sum, count, text }] of byPath) {\n    const avg = new Float32Array(sum.length);\n    for (let i = 0; i < sum.length; i++) {\n      avg[i] = sum[i] / count;\n    }\n    result.set(path, { embedding: avg, text });\n  }\n  return result;\n}\n\nasync function getReferenceEmbedding(\n  backend: StorageBackend,\n  projectId: number,\n  path: string,\n): Promise<{ embedding: Float32Array; found: boolean }> {\n  const rows = await backend.getChunksForPath(projectId, path);\n\n  if (rows.length === 0) {\n    return { embedding: new Float32Array(0), found: false };\n  }\n\n  const embRows = rows.filter(r => r.embedding !== null) as Array<{ text: string; embedding: Buffer }>;\n  if (embRows.length === 0) {\n    return { embedding: new Float32Array(0), found: false };\n  }\n\n  const dim = deserializeEmbedding(embRows[0].embedding).length;\n  const sum = new Float32Array(dim);\n  for (const row of embRows) {\n    const vec = deserializeEmbedding(row.embedding);\n    for (let i = 0; i < dim; i++) {\n      sum[i] += vec[i];\n    }\n  }\n  const avg = new Float32Array(dim);\n  for (let i = 0; i < dim; i++) {\n    avg[i] = sum[i] / embRows.length;\n  }\n  return { embedding: avg, found: true };\n}\n\nasync function bfsGraphDistance(backend: StorageBackend, source: string, target: string): Promise<number> {\n  if (source === target) return 0;\n\n  const visited = new Set<string>([source]);\n  const queue: Array<{ path: string; hops: number }> = [{ path: source, hops: 0 }];\n\n  while (queue.length > 0) {\n    const { path, hops } = queue.shift()!;\n    if (hops >= BFS_HOP_CAP) continue;\n\n    const [forwardLinks, backwardLinks] = await Promise.all([\n      backend.getLinksFromSource(path),\n      backend.getLinksToTarget(path),\n    ]);\n\n    const neighbors: string[] = [\n      ...forwardLinks.filter(l => l.targetPath !== null).map(l => l.targetPath as string),\n      ...backwardLinks.map(l => l.sourcePath),\n    ];\n\n    for (const neighbor of neighbors) {\n      if (neighbor === target) return hops + 1;\n      if (!visited.has(neighbor)) {\n        visited.add(neighbor);\n        queue.push({ path: neighbor, hops: hops + 1 });\n      }\n    }\n  }\n\n  return Infinity;\n}\n\nfunction getBestChunkText(\n  chunkRows: Array<{ text: string; embedding: Buffer | null }>,\n  refEmbedding: Float32Array,\n): string {\n  const rows = chunkRows.filter(r => r.embedding !== null) as Array<{ text: string; embedding: Buffer }>;\n  if (rows.length === 0) return \"\";\n\n  let bestText = rows[0].text;\n  let bestSim = -Infinity;\n\n  for (const row of rows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const sim = cosineSimilarity(refEmbedding, vec);\n    if (sim > bestSim) {\n      bestSim = sim;\n      bestText = row.text;\n    }\n  }\n\n  return bestText.trim().slice(0, 200);\n}\n\n/**\n * Find notes that are semantically similar to a reference note but graph-distant —\n * revealing surprising conceptual connections across unrelated areas of the Zettelkasten.\n */\nexport async function zettelSurprise(\n  backend: StorageBackend,\n  opts: SurpriseOptions,\n): Promise<SurpriseResult[]> {\n  const limit = opts.limit ?? 10;\n  const minSimilarity = opts.minSimilarity ?? 0.3;\n  const minGraphDistance = opts.minGraphDistance ?? 3;\n\n  let { embedding: refEmbedding, found } = await getReferenceEmbedding(\n    backend,\n    opts.vaultProjectId,\n    opts.referencePath,\n  );\n\n  // Fall back to generating an embedding from the file title if no chunks exist\n  if (!found) {\n    const files = await backend.getVaultFilesByPaths([opts.referencePath]);\n    const text = files[0]?.title ?? opts.referencePath;\n    refEmbedding = await generateEmbedding(text, true);\n  }\n\n  const allFileEmbeddings = await getFileEmbeddings(backend, opts.vaultProjectId);\n\n  // Remove the reference note itself from candidates\n  allFileEmbeddings.delete(opts.referencePath);\n\n  // First pass: filter by semantic similarity to avoid BFS on all nodes\n  const semanticCandidates: Array<{ path: string; sim: number }> = [];\n  for (const [path, { embedding }] of allFileEmbeddings) {\n    const sim = cosineSimilarity(refEmbedding, embedding);\n    if (sim >= minSimilarity) {\n      semanticCandidates.push({ path, sim });\n    }\n  }\n\n  // Compute graph distances for semantic candidates\n  const results: SurpriseResult[] = [];\n\n  for (const { path, sim } of semanticCandidates) {\n    const graphDistance = await bfsGraphDistance(backend, opts.referencePath, path);\n\n    const effectiveDistance = isFinite(graphDistance) ? graphDistance : BFS_HOP_CAP;\n    if (effectiveDistance < minGraphDistance) continue;\n\n    const files = await backend.getVaultFilesByPaths([path]);\n    const chunkRows = await backend.getChunksForPath(opts.vaultProjectId, path, 20);\n\n    const surpriseScore = sim * Math.log2(effectiveDistance + 1);\n    const sharedSnippet = getBestChunkText(chunkRows, refEmbedding);\n\n    results.push({\n      path,\n      title: files[0]?.title ?? null,\n      cosineSimilarity: sim,\n      graphDistance: isFinite(graphDistance) ? graphDistance : Infinity,\n      surpriseScore,\n      sharedSnippet,\n    });\n  }\n\n  results.sort((a, b) => b.surpriseScore - a.surpriseScore);\n  return results.slice(0, limit);\n}\n","import type { StorageBackend } from \"../storage/interface.js\";\nimport type { SearchResult } from \"../memory/search.js\";\nimport { generateEmbedding } from \"../memory/embeddings.js\";\n\nexport interface ConverseOptions {\n  /** The user's question or topic to explore. */\n  question: string;\n  /** project_id for vault chunks in memory_chunks. */\n  vaultProjectId: number;\n  /** Graph expansion depth. Default 2. */\n  depth?: number;\n  /** Maximum number of relevant notes to return. Default 15. */\n  limit?: number;\n}\n\nexport interface ConverseConnection {\n  fromPath: string;\n  toPath: string;\n  /** Top-level folder of fromPath. */\n  fromDomain: string;\n  /** Top-level folder of toPath. */\n  toDomain: string;\n  /** Link count between these two notes (can be > 1). */\n  strength: number;\n}\n\nexport interface ConverseResult {\n  relevantNotes: Array<{\n    path: string;\n    title: string | null;\n    snippet: string;\n    score: number;\n    domain: string;\n  }>;\n  /** Cross-domain connections found among the selected notes. */\n  connections: ConverseConnection[];\n  /** Unique domains involved across all selected notes. */\n  domains: string[];\n  /** AI-ready prompt combining notes + connections for insight generation. */\n  synthesisPrompt: string;\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Extract the top-level folder from a vault path (first path segment). */\nfunction extractDomain(vaultPath: string): string {\n  const slash = vaultPath.indexOf(\"/\");\n  return slash === -1 ? vaultPath : vaultPath.slice(0, slash);\n}\n\n/**\n * Expand one level of graph neighbors for a set of paths.\n * Returns all outbound and inbound neighbor paths (excluding already-visited).\n */\nasync function expandNeighbors(backend: StorageBackend, paths: Set<string>): Promise<string[]> {\n  if (paths.size === 0) return [];\n  const pathList = Array.from(paths);\n\n  const [forwardLinks, backwardLinks] = await Promise.all([\n    backend.getVaultLinksFromPaths(pathList),\n    Promise.all(pathList.map(p => backend.getLinksToTarget(p))),\n  ]);\n\n  const neighbors: string[] = [];\n  for (const link of forwardLinks) {\n    if (link.targetPath) neighbors.push(link.targetPath);\n  }\n  for (const linkList of backwardLinks) {\n    for (const link of linkList) {\n      neighbors.push(link.sourcePath);\n    }\n  }\n  return neighbors;\n}\n\n/**\n * Hybrid search combining keyword + semantic results using the StorageBackend.\n */\nasync function hybridSearch(\n  backend: StorageBackend,\n  query: string,\n  queryEmbedding: Float32Array,\n  opts: { projectIds?: number[]; maxResults?: number },\n): Promise<SearchResult[]> {\n  const maxResults = opts.maxResults ?? 10;\n  const kw = 0.5;\n  const sw = 0.5;\n\n  const [keywordResults, semanticResults] = await Promise.all([\n    backend.searchKeyword(query, { ...opts, maxResults: 50 }),\n    backend.searchSemantic(queryEmbedding, { ...opts, maxResults: 50 }),\n  ]);\n\n  if (keywordResults.length === 0 && semanticResults.length === 0) return [];\n\n  const keyFor = (r: SearchResult) =>\n    `${r.projectId}:${r.path}:${r.startLine}:${r.endLine}`;\n\n  function minMaxNormalize(scores: number[]): number[] {\n    const min = Math.min(...scores);\n    const max = Math.max(...scores);\n    const range = max - min;\n    if (range === 0) return scores.map(() => 1.0);\n    return scores.map(s => (s - min) / range);\n  }\n\n  const kwNorm = minMaxNormalize(keywordResults.map(r => r.score));\n  const semNorm = minMaxNormalize(semanticResults.map(r => r.score));\n\n  const combined = new Map<string, SearchResult & { combinedScore: number }>();\n\n  for (let i = 0; i < keywordResults.length; i++) {\n    const r = keywordResults[i];\n    const k = keyFor(r);\n    combined.set(k, { ...r, combinedScore: kw * kwNorm[i] });\n  }\n\n  for (let i = 0; i < semanticResults.length; i++) {\n    const r = semanticResults[i];\n    const k = keyFor(r);\n    const existing = combined.get(k);\n    if (existing) {\n      existing.combinedScore += sw * semNorm[i];\n    } else {\n      combined.set(k, { ...r, combinedScore: sw * semNorm[i] });\n    }\n  }\n\n  const sorted = Array.from(combined.values())\n    .sort((a, b) => b.combinedScore - a.combinedScore)\n    .slice(0, maxResults);\n\n  return sorted.map(r => ({ ...r, score: r.combinedScore }));\n}\n\n// ---------------------------------------------------------------------------\n// Main export\n// ---------------------------------------------------------------------------\n\n/**\n * Let the vault \"talk back\" — find notes relevant to a question, expand\n * through the link graph, identify cross-domain connections, and return a\n * structured result including a synthesis prompt for an AI to generate insights.\n */\nexport async function zettelConverse(\n  backend: StorageBackend,\n  opts: ConverseOptions,\n): Promise<ConverseResult> {\n  const depth = Math.max(opts.depth ?? 2, 0);\n  const limit = Math.max(opts.limit ?? 15, 1);\n  const candidateLimit = 20;\n\n  // ------------------------------------------------------------------\n  // 1. Hybrid search: find top candidates via BM25 + semantic similarity\n  // ------------------------------------------------------------------\n  const queryEmbedding = await generateEmbedding(opts.question, true);\n\n  const searchResults = await hybridSearch(\n    backend,\n    opts.question,\n    queryEmbedding,\n    {\n      projectIds: [opts.vaultProjectId],\n      maxResults: candidateLimit,\n    },\n  );\n\n  // Map of path -> best score + snippet from search results\n  const searchHits = new Map<string, { score: number; snippet: string }>();\n  for (const r of searchResults) {\n    const existing = searchHits.get(r.path);\n    if (!existing || r.score > existing.score) {\n      searchHits.set(r.path, { score: r.score, snippet: r.snippet });\n    }\n  }\n\n  // ------------------------------------------------------------------\n  // 2. Graph expansion: BFS from each search result up to `depth` levels\n  // ------------------------------------------------------------------\n  const allPaths = new Set<string>(searchHits.keys());\n  let frontier = new Set<string>(searchHits.keys());\n\n  for (let d = 0; d < depth; d++) {\n    const neighbors = await expandNeighbors(backend, frontier);\n    const newFrontier = new Set<string>();\n    for (const n of neighbors) {\n      if (!allPaths.has(n)) {\n        allPaths.add(n);\n        newFrontier.add(n);\n      }\n    }\n    if (newFrontier.size === 0) break;\n    frontier = newFrontier;\n  }\n\n  // ------------------------------------------------------------------\n  // 3. Deduplicate + trim to limit\n  // ------------------------------------------------------------------\n  const searchRanked = Array.from(searchHits.entries())\n    .sort((a, b) => b[1].score - a[1].score)\n    .map(([path, info]) => ({ path, ...info, isSearchResult: true }));\n\n  const neighborPaths = Array.from(allPaths).filter((p) => !searchHits.has(p));\n\n  // Fetch health data for neighbor ranking\n  const neighborHealthRows = await Promise.all(\n    neighborPaths.map(p => backend.getVaultHealth(p))\n  );\n  const neighborRanked = neighborPaths\n    .map((path, idx) => ({\n      path,\n      score: 0,\n      snippet: \"\",\n      inbound: neighborHealthRows[idx]?.inboundCount ?? 0,\n      isSearchResult: false,\n    }))\n    .sort((a, b) => b.inbound - a.inbound);\n\n  const budgetForNeighbors = Math.max(limit - searchRanked.length, 0);\n  const selectedNeighbors = neighborRanked.slice(0, budgetForNeighbors);\n\n  const selectedSearchPaths = searchRanked.slice(0, limit);\n  const selectedPaths = new Set<string>([\n    ...selectedSearchPaths.map((r) => r.path),\n    ...selectedNeighbors.map((r) => r.path),\n  ]);\n\n  // ------------------------------------------------------------------\n  // 4. Build relevantNotes with titles + domains\n  // ------------------------------------------------------------------\n\n  // Fetch titles in bulk\n  const allSelectedPaths = Array.from(selectedPaths);\n  const fileRows = await backend.getVaultFilesByPaths(allSelectedPaths);\n  const titleMap = new Map<string, string | null>(fileRows.map(f => [f.vaultPath, f.title]));\n\n  const relevantNotes: ConverseResult[\"relevantNotes\"] = [];\n\n  for (const r of selectedSearchPaths) {\n    if (!selectedPaths.has(r.path)) continue;\n    relevantNotes.push({\n      path: r.path,\n      title: titleMap.get(r.path) ?? null,\n      snippet: r.snippet,\n      score: r.score,\n      domain: extractDomain(r.path),\n    });\n  }\n\n  for (const r of selectedNeighbors) {\n    relevantNotes.push({\n      path: r.path,\n      title: titleMap.get(r.path) ?? null,\n      snippet: r.snippet,\n      score: 0,\n      domain: extractDomain(r.path),\n    });\n  }\n\n  // ------------------------------------------------------------------\n  // 5. Find connections between the selected notes\n  // ------------------------------------------------------------------\n  let connections: ConverseConnection[] = [];\n\n  if (selectedPaths.size > 0) {\n    const pathList = Array.from(selectedPaths);\n    const pathSet = new Set(pathList);\n\n    // Get all outbound links from the selected paths\n    const linkRows = await backend.getVaultLinksFromPaths(pathList);\n\n    // Count links between selected paths\n    const edgeCounts = new Map<string, number>();\n    for (const link of linkRows) {\n      if (link.targetPath && pathSet.has(link.targetPath)) {\n        const key = `${link.sourcePath}|||${link.targetPath}`;\n        edgeCounts.set(key, (edgeCounts.get(key) ?? 0) + 1);\n      }\n    }\n\n    for (const [key, cnt] of edgeCounts) {\n      const [sourcePath, targetPath] = key.split(\"|||\");\n      connections.push({\n        fromPath: sourcePath,\n        toPath: targetPath,\n        fromDomain: extractDomain(sourcePath),\n        toDomain: extractDomain(targetPath),\n        strength: cnt,\n      });\n    }\n  }\n\n  // ------------------------------------------------------------------\n  // 6. Domains + cross-domain filter\n  // ------------------------------------------------------------------\n  const domainSet = new Set<string>(relevantNotes.map((n) => n.domain));\n  const domains = Array.from(domainSet).sort();\n\n  const crossDomainConnections = connections.filter(\n    (c) => c.fromDomain !== c.toDomain,\n  );\n\n  // ------------------------------------------------------------------\n  // 7. Build synthesis prompt\n  // ------------------------------------------------------------------\n  const notesSummary = relevantNotes\n    .map((n, i) => {\n      const title = n.title ? `\"${n.title}\"` : \"(untitled)\";\n      const domain = n.domain;\n      const scoreLabel = n.score > 0 ? ` [relevance: ${n.score.toFixed(3)}]` : \" [context]\";\n      const snippet = n.snippet.trim().slice(0, 300);\n      return `${i + 1}. [${domain}] ${title}${scoreLabel}\\n   Path: ${n.path}\\n   \"${snippet}\"`;\n    })\n    .join(\"\\n\\n\");\n\n  const connectionSummary =\n    crossDomainConnections.length > 0\n      ? crossDomainConnections\n          .map(\n            (c) =>\n              `- \"${c.fromPath}\" (${c.fromDomain}) → \"${c.toPath}\" (${c.toDomain}) [strength: ${c.strength}]`,\n          )\n          .join(\"\\n\")\n      : \"(no cross-domain connections found)\";\n\n  const domainList = domains.join(\", \");\n\n  const synthesisPrompt = `You are a Zettelkasten research assistant. The vault has surfaced the following notes in response to this question:\n\nQUESTION: ${opts.question}\n\n---\n\nRELEVANT NOTES (${relevantNotes.length} notes across ${domains.length} domain(s): ${domainList}):\n\n${notesSummary}\n\n---\n\nCROSS-DOMAIN CONNECTIONS (links bridging different knowledge areas):\n\n${connectionSummary}\n\n---\n\nSYNTHESIS TASK:\n\nBased on these notes and the connections between them, please:\n\n1. Identify the key insights that emerge in direct response to the question.\n2. Highlight any unexpected connections between notes from different domains (${domainList}).\n3. Point out tensions, contradictions, or open questions the vault raises but does not resolve.\n4. Suggest what is notably absent — what the vault does NOT yet contain that would strengthen the understanding of this topic.\n5. Propose 2-3 new notes that would meaningfully extend this knowledge cluster.\n\nThink like a scholar who has deeply internalized these ideas and is now synthesizing them for the first time.`;\n\n  return {\n    relevantNotes,\n    connections: crossDomainConnections,\n    domains,\n    synthesisPrompt,\n  };\n}\n","import type { StorageBackend } from \"../storage/interface.js\";\n\nexport interface HealthOptions {\n  scope?: \"full\" | \"recent\" | \"project\";\n  projectPath?: string;\n  recentDays?: number;\n  include?: Array<\"dead_links\" | \"orphans\" | \"disconnected\" | \"low_connectivity\">;\n}\n\nexport interface DeadLink {\n  sourcePath: string;\n  targetRaw: string;\n  lineNumber: number;\n}\n\nexport interface HealthResult {\n  totalFiles: number;\n  totalLinks: number;\n  deadLinks: DeadLink[];\n  orphans: string[];\n  disconnectedClusters: number;\n  lowConnectivity: string[];\n  healthScore: number;\n  computedAt: number;\n}\n\nfunction countComponents(nodes: string[], edges: Array<{ source: string; target: string }>): number {\n  if (nodes.length === 0) return 0;\n\n  const parent = new Map<string, string>();\n  const rank = new Map<string, number>();\n\n  for (const n of nodes) {\n    parent.set(n, n);\n    rank.set(n, 0);\n  }\n\n  function find(x: string): string {\n    let root = x;\n    while (parent.get(root) !== root) {\n      root = parent.get(root)!;\n    }\n    let current = x;\n    while (current !== root) {\n      const next = parent.get(current)!;\n      parent.set(current, root);\n      current = next;\n    }\n    return root;\n  }\n\n  function union(a: string, b: string): void {\n    const ra = find(a);\n    const rb = find(b);\n    if (ra === rb) return;\n    const rankA = rank.get(ra) ?? 0;\n    const rankB = rank.get(rb) ?? 0;\n    if (rankA < rankB) {\n      parent.set(ra, rb);\n    } else if (rankA > rankB) {\n      parent.set(rb, ra);\n    } else {\n      parent.set(rb, ra);\n      rank.set(ra, rankA + 1);\n    }\n  }\n\n  for (const { source, target } of edges) {\n    if (parent.has(source) && parent.has(target)) {\n      union(source, target);\n    }\n  }\n\n  const roots = new Set<string>();\n  for (const n of nodes) {\n    roots.add(find(n));\n  }\n  return roots.size;\n}\n\n/**\n * Audit the structural health of the Zettelkasten vault using graph metrics.\n */\nexport async function zettelHealth(backend: StorageBackend, opts?: HealthOptions): Promise<HealthResult> {\n  const options = opts ?? {};\n  const scope = options.scope ?? \"full\";\n  const include = options.include ?? [\"dead_links\", \"orphans\", \"disconnected\", \"low_connectivity\"];\n\n  const computedAt = Date.now();\n\n  // --- totalFiles ---\n  let totalFiles = 0;\n  if (scope === \"full\") {\n    totalFiles = await backend.countVaultFiles();\n  } else if (scope === \"project\") {\n    const prefix = options.projectPath ?? \"\";\n    totalFiles = await backend.countVaultFilesWithPrefix(prefix);\n  } else {\n    const days = options.recentDays ?? 30;\n    const cutoff = computedAt - days * 86400000;\n    totalFiles = await backend.countVaultFilesAfter(cutoff);\n  }\n\n  // --- totalLinks ---\n  let totalLinks = 0;\n  if (scope === \"full\") {\n    // Count total links via link graph length\n    const graph = await backend.getVaultLinkGraph();\n    totalLinks = graph.length;\n  } else if (scope === \"project\") {\n    const prefix = options.projectPath ?? \"\";\n    totalLinks = await backend.countVaultLinksWithPrefix(prefix);\n  } else {\n    const days = options.recentDays ?? 30;\n    const cutoff = computedAt - days * 86400000;\n    totalLinks = await backend.countVaultLinksAfter(cutoff);\n  }\n\n  // --- deadLinks ---\n  let deadLinks: DeadLink[] = [];\n  if (include.includes(\"dead_links\")) {\n    if (scope === \"full\") {\n      deadLinks = await backend.getDeadLinksWithLineNumbers();\n    } else if (scope === \"project\") {\n      const prefix = options.projectPath ?? \"\";\n      deadLinks = await backend.getDeadLinksWithPrefix(prefix);\n    } else {\n      const days = options.recentDays ?? 30;\n      const cutoff = computedAt - days * 86400000;\n      deadLinks = await backend.getDeadLinksAfter(cutoff);\n    }\n  }\n\n  // --- orphans ---\n  let orphans: string[] = [];\n  if (include.includes(\"orphans\")) {\n    if (scope === \"full\") {\n      const orphanRows = await backend.getOrphans();\n      orphans = orphanRows.map(r => r.vaultPath);\n    } else if (scope === \"project\") {\n      const prefix = options.projectPath ?? \"\";\n      orphans = await backend.getOrphansWithPrefix(prefix);\n    } else {\n      const days = options.recentDays ?? 30;\n      const cutoff = computedAt - days * 86400000;\n      orphans = await backend.getOrphansAfter(cutoff);\n    }\n  }\n\n  // --- disconnectedClusters (union-find) ---\n  let disconnectedClusters = 1;\n  if (include.includes(\"disconnected\")) {\n    let allNodes: string[];\n    let allEdges: Array<{ source: string; target: string }>;\n\n    if (scope === \"full\") {\n      [allNodes, allEdges] = await Promise.all([\n        backend.getAllVaultFilePaths(),\n        backend.getVaultLinkEdges(),\n      ]);\n    } else if (scope === \"project\") {\n      const prefix = options.projectPath ?? \"\";\n      [allNodes, allEdges] = await Promise.all([\n        backend.getVaultFilePathsWithPrefix(prefix),\n        backend.getVaultLinkEdgesWithPrefix(prefix),\n      ]);\n    } else {\n      const days = options.recentDays ?? 30;\n      const cutoff = computedAt - days * 86400000;\n      [allNodes, allEdges] = await Promise.all([\n        backend.getVaultFilePathsAfter(cutoff),\n        backend.getVaultLinkEdgesAfter(cutoff),\n      ]);\n    }\n\n    disconnectedClusters = countComponents(allNodes, allEdges);\n  }\n\n  // --- lowConnectivity ---\n  let lowConnectivity: string[] = [];\n  if (include.includes(\"low_connectivity\")) {\n    if (scope === \"full\") {\n      lowConnectivity = await backend.getLowConnectivity();\n    } else if (scope === \"project\") {\n      const prefix = options.projectPath ?? \"\";\n      lowConnectivity = await backend.getLowConnectivityWithPrefix(prefix);\n    } else {\n      const days = options.recentDays ?? 30;\n      const cutoff = computedAt - days * 86400000;\n      lowConnectivity = await backend.getLowConnectivityAfter(cutoff);\n    }\n  }\n\n  // --- healthScore ---\n  const deadRatio = totalLinks > 0 ? deadLinks.length / totalLinks : 0;\n  const orphanRatio = totalFiles > 0 ? orphans.length / totalFiles : 0;\n  const lowConnRatio = totalFiles > 0 ? lowConnectivity.length / totalFiles : 0;\n  const healthScore = Math.round(\n    100 * (1 - deadRatio) * (1 - orphanRatio * 0.5) * (1 - lowConnRatio * 0.3),\n  );\n\n  return {\n    totalFiles,\n    totalLinks,\n    deadLinks,\n    orphans,\n    disconnectedClusters,\n    lowConnectivity,\n    healthScore,\n    computedAt,\n  };\n}\n","import type { StorageBackend } from \"../storage/interface.js\";\nimport { deserializeEmbedding, cosineSimilarity } from \"../memory/embeddings.js\";\nimport { basename } from \"node:path\";\nimport { STOP_WORDS } from \"../utils/stop-words.js\";\n\nexport interface SuggestOptions {\n  notePath: string;\n  vaultProjectId: number;\n  limit?: number;\n  excludeLinked?: boolean;\n}\n\nexport interface Suggestion {\n  path: string;\n  title: string | null;\n  score: number;\n  semanticScore: number;\n  tagScore: number;\n  neighborScore: number;\n  reason: string;\n  suggestedWikilink: string;\n}\n\nconst MAX_CHUNKS = 5000;\nconst SEMANTIC_WEIGHT = 0.5;\nconst TAG_WEIGHT = 0.2;\nconst NEIGHBOR_WEIGHT = 0.3;\n\n// STOP_WORDS imported from utils/stop-words.ts\n\nfunction extractTagsFromChunkTexts(texts: string[]): Set<string> {\n  const tags = new Set<string>();\n  for (const text of texts) {\n    // Match YAML frontmatter tags block: \"tags:\\n  - tag1\\n  - tag2\"\n    const match = text.match(/^tags:\\s*\\n((?:[ \\t]*-[ \\t]*.+\\n?)*)/m);\n    if (!match) continue;\n    const block = match[1];\n    const lines = block.split(\"\\n\");\n    for (const line of lines) {\n      const tagMatch = line.match(/^[ \\t]*-[ \\t]*(.+)/);\n      if (tagMatch) {\n        const tag = tagMatch[1].trim().toLowerCase();\n        if (tag) tags.add(tag);\n      }\n    }\n  }\n  return tags;\n}\n\nfunction jaccardSimilarity(a: Set<string>, b: Set<string>): number {\n  if (a.size === 0 && b.size === 0) return 0;\n  let intersection = 0;\n  for (const tag of a) {\n    if (b.has(tag)) intersection++;\n  }\n  const union = a.size + b.size - intersection;\n  return union === 0 ? 0 : intersection / union;\n}\n\nfunction buildReason(\n  semanticScore: number,\n  tagScore: number,\n  neighborScore: number,\n  neighborCount: number,\n): string {\n  const signals: Array<{ label: string; value: number }> = [\n    { label: `Semantically similar (${semanticScore.toFixed(2)})`, value: semanticScore * SEMANTIC_WEIGHT },\n    { label: `Shared tags (${tagScore.toFixed(2)} Jaccard)`, value: tagScore * TAG_WEIGHT },\n    { label: `Linked by ${neighborCount} mutual connection${neighborCount !== 1 ? \"s\" : \"\"}`, value: neighborScore * NEIGHBOR_WEIGHT },\n  ];\n  signals.sort((a, b) => b.value - a.value);\n  return signals[0].label;\n}\n\nfunction suggestedWikilink(vaultPath: string): string {\n  const base = basename(vaultPath);\n  const name = base.endsWith(\".md\") ? base.slice(0, -3) : base;\n  return `[[${name}]]`;\n}\n\n/**\n * Proactively find notes worth linking to a given note, combining semantic similarity,\n * shared tags, and graph-neighborhood signals into a ranked list of suggestions.\n */\nexport async function zettelSuggest(\n  backend: StorageBackend,\n  opts: SuggestOptions,\n): Promise<Suggestion[]> {\n  const limit = opts.limit ?? 5;\n  const excludeLinked = opts.excludeLinked ?? true;\n\n  // Step 1: get current outbound links\n  const outboundLinks = await backend.getLinksFromSource(opts.notePath);\n  const linkedPaths = new Set(outboundLinks.filter(l => l.targetPath !== null).map(l => l.targetPath as string));\n\n  // Step 2a: get all file-level embeddings for semantic scoring\n  const chunkRows = await backend.getChunksWithEmbeddings(opts.vaultProjectId, MAX_CHUNKS);\n\n  const byPath = new Map<string, { sum: Float32Array; count: number }>();\n  for (const row of chunkRows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const entry = byPath.get(row.path);\n    if (!entry) {\n      byPath.set(row.path, { sum: new Float32Array(vec), count: 1 });\n    } else {\n      for (let i = 0; i < vec.length; i++) {\n        entry.sum[i] += vec[i];\n      }\n      entry.count++;\n    }\n  }\n\n  const allEmbeddings = new Map<string, Float32Array>();\n  for (const [path, { sum, count }] of byPath) {\n    const avg = new Float32Array(sum.length);\n    for (let i = 0; i < sum.length; i++) {\n      avg[i] = sum[i] / count;\n    }\n    allEmbeddings.set(path, avg);\n  }\n  allEmbeddings.delete(opts.notePath);\n\n  // Step 2b: get source embedding\n  const sourceEmbedding = allEmbeddings.get(opts.notePath) ?? null;\n\n  // Step 2c: get source tags\n  const sourceChunkTexts = await backend.getChunksForPath(opts.vaultProjectId, opts.notePath, 5);\n  const sourceTags = extractTagsFromChunkTexts(sourceChunkTexts.map(r => r.text));\n\n  // Step 2d: compute graph neighborhood (friends-of-friends)\n  const directLinks = await backend.getLinksFromSource(opts.notePath);\n  const directTargets = directLinks.filter(l => l.targetPath !== null).map(l => l.targetPath as string);\n\n  const friendLinkCounts = new Map<string, number>();\n  for (const target of directTargets) {\n    const friendLinks = await backend.getLinksFromSource(target);\n    for (const link of friendLinks) {\n      if (link.targetPath && link.targetPath !== opts.notePath) {\n        friendLinkCounts.set(link.targetPath, (friendLinkCounts.get(link.targetPath) ?? 0) + 1);\n      }\n    }\n  }\n  const maxFriendLinks = Math.max(1, ...friendLinkCounts.values());\n\n  // Get all vault files to enumerate candidates\n  const allFiles = await backend.getAllVaultFiles();\n\n  const suggestions: Suggestion[] = [];\n\n  for (const fileRow of allFiles) {\n    const vault_path = fileRow.vaultPath;\n    const title = fileRow.title;\n\n    if (vault_path === opts.notePath) continue;\n    if (excludeLinked && linkedPaths.has(vault_path)) continue;\n\n    // Semantic score\n    let semanticScore = 0;\n    if (sourceEmbedding) {\n      const candidateEmbedding = allEmbeddings.get(vault_path);\n      if (candidateEmbedding) {\n        semanticScore = Math.max(0, cosineSimilarity(sourceEmbedding, candidateEmbedding));\n      }\n    }\n\n    // Tag score (only compute if candidate might have chunks)\n    let tagScore = 0;\n    if (allEmbeddings.has(vault_path)) {\n      const candidateChunkTexts = await backend.getChunksForPath(opts.vaultProjectId, vault_path, 5);\n      const candidateTags = extractTagsFromChunkTexts(candidateChunkTexts.map(r => r.text));\n      tagScore = jaccardSimilarity(sourceTags, candidateTags);\n    }\n\n    // Neighbor score\n    const friendCount = friendLinkCounts.get(vault_path) ?? 0;\n    const neighborScore = friendCount / maxFriendLinks;\n\n    const score =\n      SEMANTIC_WEIGHT * semanticScore +\n      TAG_WEIGHT * tagScore +\n      NEIGHBOR_WEIGHT * neighborScore;\n\n    // Only include if there is at least some signal\n    if (score <= 0) continue;\n\n    const reason = buildReason(semanticScore, tagScore, neighborScore, friendCount);\n\n    suggestions.push({\n      path: vault_path,\n      title,\n      score,\n      semanticScore,\n      tagScore,\n      neighborScore,\n      reason,\n      suggestedWikilink: suggestedWikilink(vault_path),\n    });\n  }\n\n  suggestions.sort((a, b) => b.score - a.score);\n  return suggestions.slice(0, 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@tekmidian/pai",
-  "version": "0.5.7",
+  "version": "0.6.0",
   "description": "PAI Knowledge OS — Personal AI Infrastructure with federated memory and project management",
   "type": "module",
   "main": "dist/index.mjs",
@@ -43,7 +43,6 @@
   "homepage": "https://github.com/mnott/PAI",
   "bin": {
     "pai": "dist/cli/index.mjs",
-    "pai-mcp": "dist/mcp/index.mjs",
     "pai-daemon": "dist/daemon/index.mjs",
     "pai-daemon-mcp": "dist/daemon-mcp/index.mjs"
   },

package/src/hooks/ts/lib/project-utils/index.ts

@@ -0,0 +1,50 @@
+/**
+ * Entry point for the project-utils/ sub-module directory.
+ * Re-exports the full public API.
+ */
+
+export {
+  PAI_DIR,
+  PROJECTS_DIR,
+  isProbeSession,
+  encodePath,
+  getProjectDir,
+  getNotesDir,
+  findNotesDir,
+  getSessionsDir,
+  getSessionsDirFromProjectDir,
+  ensureNotesDir,
+  ensureNotesDirSmart,
+  ensureSessionsDir,
+  ensureSessionsDirFromProjectDir,
+  moveSessionFilesToSessionsDir,
+  findTodoPath,
+  findClaudeMdPath,
+  findAllClaudeMdPaths,
+} from "./paths.js";
+
+export { isWhatsAppEnabled, sendNtfyNotification } from "./notify.js";
+
+export {
+  getNextNoteNumber,
+  getCurrentNotePath,
+  createSessionNote,
+  appendCheckpoint,
+  addWorkToSessionNote,
+  sanitizeForFilename,
+  extractMeaningfulName,
+  renameSessionNote,
+  updateSessionNoteTitle,
+  finalizeSessionNote,
+} from "./session-notes.js";
+export type { WorkItem } from "./session-notes.js";
+
+export { calculateSessionTokens } from "./tokens.js";
+
+export {
+  ensureTodoMd,
+  updateTodoMd,
+  addTodoCheckpoint,
+  updateTodoContinue,
+} from "./todo.js";
+export type { TodoItem } from "./todo.js";

package/src/hooks/ts/lib/project-utils/notify.ts

@@ -0,0 +1,75 @@
+/**
+ * Push notification helpers — WhatsApp-aware with ntfy.sh fallback.
+ */
+
+import { existsSync, readFileSync } from 'fs';
+import { join } from 'path';
+import { homedir } from 'os';
+
+/**
+ * Check if a messaging MCP server (AIBroker, Whazaa, or Telex) is configured.
+ * When any messaging server is active, the AI handles notifications via MCP
+ * and ntfy is skipped to avoid duplicates.
+ */
+export function isWhatsAppEnabled(): boolean {
+  try {
+    const settingsPath = join(homedir(), '.claude', 'settings.json');
+    if (!existsSync(settingsPath)) return false;
+
+    const settings = JSON.parse(readFileSync(settingsPath, 'utf-8'));
+    const enabled: string[] = settings.enabledMcpjsonServers || [];
+    return enabled.includes('aibroker') || enabled.includes('whazaa') || enabled.includes('telex');
+  } catch {
+    return false;
+  }
+}
+
+/**
+ * Send push notification — WhatsApp-aware with ntfy fallback.
+ *
+ * When WhatsApp (Whazaa) is enabled in MCP config, ntfy is SKIPPED
+ * because the AI sends WhatsApp messages directly via MCP.
+ * When WhatsApp is NOT configured, ntfy fires as the fallback channel.
+ */
+export async function sendNtfyNotification(message: string, retries = 2): Promise<boolean> {
+  if (isWhatsAppEnabled()) {
+    console.error(`WhatsApp (Whazaa) enabled in MCP config — skipping ntfy`);
+    return true;
+  }
+
+  const topic = process.env.NTFY_TOPIC;
+
+  if (!topic) {
+    console.error('NTFY_TOPIC not set and WhatsApp not active — notifications disabled');
+    return false;
+  }
+
+  for (let attempt = 0; attempt <= retries; attempt++) {
+    try {
+      const response = await fetch(`https://ntfy.sh/${topic}`, {
+        method: 'POST',
+        body: message,
+        headers: {
+          'Title': 'Claude Code',
+          'Priority': 'default',
+        },
+      });
+
+      if (response.ok) {
+        console.error(`ntfy.sh notification sent (WhatsApp inactive): "${message}"`);
+        return true;
+      } else {
+        console.error(`ntfy.sh attempt ${attempt + 1} failed: ${response.status}`);
+      }
+    } catch (error) {
+      console.error(`ntfy.sh attempt ${attempt + 1} error: ${error}`);
+    }
+
+    if (attempt < retries) {
+      await new Promise(resolve => setTimeout(resolve, 1000));
+    }
+  }
+
+  console.error('ntfy.sh notification failed after all retries');
+  return false;
+}

package/src/hooks/ts/lib/project-utils/paths.ts

@@ -0,0 +1,218 @@
+/**
+ * Path utilities — encoding, Notes/Sessions directory discovery and creation.
+ */
+
+import { existsSync, mkdirSync, readdirSync, renameSync } from 'fs';
+import { join, basename } from 'path';
+import { PAI_DIR } from '../pai-paths.js';
+
+// Re-export PAI_DIR for consumers
+export { PAI_DIR };
+export const PROJECTS_DIR = join(PAI_DIR, 'projects');
+
+/**
+ * Directories known to be automated health-check / probe sessions.
+ * Hooks should exit early for these to avoid registry clutter and wasted work.
+ */
+const PROBE_CWD_PATTERNS = [
+  '/CodexBar/ClaudeProbe',
+  '/ClaudeProbe',
+];
+
+/**
+ * Check if the current working directory belongs to a probe/health-check session.
+ * Returns true if hooks should skip this session entirely.
+ */
+export function isProbeSession(cwd?: string): boolean {
+  const dir = cwd || process.cwd();
+  return PROBE_CWD_PATTERNS.some(pattern => dir.includes(pattern));
+}
+
+/**
+ * Encode a path the same way Claude Code does:
+ * - Replace / with -
+ * - Replace . with -
+ * - Replace space with -
+ */
+export function encodePath(path: string): string {
+  return path
+    .replace(/\//g, '-')
+    .replace(/\./g, '-')
+    .replace(/ /g, '-');
+}
+
+/** Get the project directory for a given working directory. */
+export function getProjectDir(cwd: string): string {
+  const encoded = encodePath(cwd);
+  return join(PROJECTS_DIR, encoded);
+}
+
+/** Get the Notes directory for a project (central location). */
+export function getNotesDir(cwd: string): string {
+  return join(getProjectDir(cwd), 'Notes');
+}
+
+/**
+ * Find Notes directory — checks local first, falls back to central.
+ * Does NOT create the directory.
+ */
+export function findNotesDir(cwd: string): { path: string; isLocal: boolean } {
+  const cwdBasename = basename(cwd).toLowerCase();
+  if (cwdBasename === 'notes' && existsSync(cwd)) {
+    return { path: cwd, isLocal: true };
+  }
+
+  const localPaths = [
+    join(cwd, 'Notes'),
+    join(cwd, 'notes'),
+    join(cwd, '.claude', 'Notes'),
+  ];
+
+  for (const path of localPaths) {
+    if (existsSync(path)) {
+      return { path, isLocal: true };
+    }
+  }
+
+  return { path: getNotesDir(cwd), isLocal: false };
+}
+
+/** Get the sessions/ directory for a project (stores .jsonl transcripts). */
+export function getSessionsDir(cwd: string): string {
+  return join(getProjectDir(cwd), 'sessions');
+}
+
+/** Get the sessions/ directory from a project directory path. */
+export function getSessionsDirFromProjectDir(projectDir: string): string {
+  return join(projectDir, 'sessions');
+}
+
+// ---------------------------------------------------------------------------
+// Directory creation helpers
+// ---------------------------------------------------------------------------
+
+/** Ensure the Notes directory exists for a project. @deprecated Use ensureNotesDirSmart() */
+export function ensureNotesDir(cwd: string): string {
+  const notesDir = getNotesDir(cwd);
+  if (!existsSync(notesDir)) {
+    mkdirSync(notesDir, { recursive: true });
+    console.error(`Created Notes directory: ${notesDir}`);
+  }
+  return notesDir;
+}
+
+/**
+ * Smart Notes directory handling:
+ * - If local Notes/ exists → use it (don't create anything new)
+ * - If no local Notes/ → ensure central exists and use that
+ */
+export function ensureNotesDirSmart(cwd: string): { path: string; isLocal: boolean } {
+  const found = findNotesDir(cwd);
+  if (found.isLocal) return found;
+  if (!existsSync(found.path)) {
+    mkdirSync(found.path, { recursive: true });
+    console.error(`Created central Notes directory: ${found.path}`);
+  }
+  return found;
+}
+
+/** Ensure the sessions/ directory exists for a project. */
+export function ensureSessionsDir(cwd: string): string {
+  const sessionsDir = getSessionsDir(cwd);
+  if (!existsSync(sessionsDir)) {
+    mkdirSync(sessionsDir, { recursive: true });
+    console.error(`Created sessions directory: ${sessionsDir}`);
+  }
+  return sessionsDir;
+}
+
+/** Ensure the sessions/ directory exists (from project dir path). */
+export function ensureSessionsDirFromProjectDir(projectDir: string): string {
+  const sessionsDir = getSessionsDirFromProjectDir(projectDir);
+  if (!existsSync(sessionsDir)) {
+    mkdirSync(sessionsDir, { recursive: true });
+    console.error(`Created sessions directory: ${sessionsDir}`);
+  }
+  return sessionsDir;
+}
+
+/**
+ * Move all .jsonl session files from project root to sessions/ subdirectory.
+ * Returns the number of files moved.
+ */
+export function moveSessionFilesToSessionsDir(
+  projectDir: string,
+  excludeFile?: string,
+  silent = false
+): number {
+  const sessionsDir = ensureSessionsDirFromProjectDir(projectDir);
+
+  if (!existsSync(projectDir)) return 0;
+
+  const files = readdirSync(projectDir);
+  let movedCount = 0;
+
+  for (const file of files) {
+    if (file.endsWith('.jsonl') && file !== excludeFile) {
+      const sourcePath = join(projectDir, file);
+      const destPath = join(sessionsDir, file);
+      try {
+        renameSync(sourcePath, destPath);
+        if (!silent) console.error(`Moved ${file} → sessions/`);
+        movedCount++;
+      } catch (error) {
+        if (!silent) console.error(`Could not move ${file}: ${error}`);
+      }
+    }
+  }
+
+  return movedCount;
+}
+
+// ---------------------------------------------------------------------------
+// CLAUDE.md / TODO.md discovery
+// ---------------------------------------------------------------------------
+
+/** Find TODO.md — check local first, fallback to central. */
+export function findTodoPath(cwd: string): string {
+  const localPaths = [
+    join(cwd, 'TODO.md'),
+    join(cwd, 'notes', 'TODO.md'),
+    join(cwd, 'Notes', 'TODO.md'),
+    join(cwd, '.claude', 'TODO.md'),
+  ];
+
+  for (const path of localPaths) {
+    if (existsSync(path)) return path;
+  }
+
+  return join(getNotesDir(cwd), 'TODO.md');
+}
+
+/** Find CLAUDE.md — returns the FIRST found path. */
+export function findClaudeMdPath(cwd: string): string | null {
+  const paths = findAllClaudeMdPaths(cwd);
+  return paths.length > 0 ? paths[0] : null;
+}
+
+/**
+ * Find ALL CLAUDE.md files in local locations in priority order.
+ */
+export function findAllClaudeMdPaths(cwd: string): string[] {
+  const foundPaths: string[] = [];
+
+  const localPaths = [
+    join(cwd, '.claude', 'CLAUDE.md'),
+    join(cwd, 'CLAUDE.md'),
+    join(cwd, 'Notes', 'CLAUDE.md'),
+    join(cwd, 'notes', 'CLAUDE.md'),
+    join(cwd, 'Prompts', 'CLAUDE.md'),
+    join(cwd, 'prompts', 'CLAUDE.md'),
+  ];
+
+  for (const path of localPaths) {
+    if (existsSync(path)) foundPaths.push(path);
+  }
+
+  return foundPaths;
+}