@tekmidian/pai 0.38.0 → 0.39.0

package/dist/{state-BY2L6-vX.mjs.map → state-CAeyOdfq.mjs.map}

@@ -1 +1 @@
-{"version":3,"file":"state-BY2L6-vX.mjs","names":[],"sources":["../src/daemon/daemon/state.ts"],"sourcesContent":["/**\n * Shared mutable daemon state — module-level singletons used across all daemon sub-modules.\n */\n\nimport { openRegistry } from \"../../registry/db.js\";\nimport type { StorageBackend } from \"../../storage/interface.js\";\nimport type { NotificationConfig } from \"../../notifications/types.js\";\nimport type { PaiDaemonConfig } from \"../config.js\";\n\n// ---------------------------------------------------------------------------\n// Core singletons (assigned at startup by serve())\n// ---------------------------------------------------------------------------\n\nexport let registryDb: ReturnType<typeof openRegistry>;\nexport let storageBackend: StorageBackend;\nexport let daemonConfig: PaiDaemonConfig;\nexport let startTime = Date.now();\n\n// ---------------------------------------------------------------------------\n// Scheduler state\n// ---------------------------------------------------------------------------\n\n/** True while a project index pass is running. */\nexport let indexInProgress = false;\nexport let lastIndexTime = 0;\nexport let indexSchedulerTimer: ReturnType<typeof setInterval> | null = null;\n\n/** True while an embedding pass is running. */\nexport let embedInProgress = false;\nexport let lastEmbedTime = 0;\nexport let embedSchedulerTimer: ReturnType<typeof setInterval> | null = null;\n\n/** True while a vault index pass is running. */\nexport let vaultIndexInProgress = false;\nexport let lastVaultIndexTime = 0;\n\n// ---------------------------------------------------------------------------\n// Notification state\n// ---------------------------------------------------------------------------\n\n/** Mutable notification config — loaded from disk at startup, patchable at runtime. */\nexport let notificationConfig: NotificationConfig;\n\n// ---------------------------------------------------------------------------\n// Graceful shutdown flag\n// ---------------------------------------------------------------------------\n\n/**\n * Set to true when a SIGTERM/SIGINT is received so that long-running loops\n * (embed, index) can detect the signal and exit their inner loops before the\n * pool/backend is closed.\n */\nexport let shutdownRequested = false;\n\n// ---------------------------------------------------------------------------\n// Setters (TypeScript requires assignment functions for exported `let` vars\n// that need to be mutated across module boundaries)\n// ---------------------------------------------------------------------------\n\nexport function setRegistryDb(db: ReturnType<typeof openRegistry>): void { registryDb = db; }\nexport function setStorageBackend(b: StorageBackend): void { storageBackend = b; }\nexport function setDaemonConfig(c: PaiDaemonConfig): void { daemonConfig = c; }\nexport function setStartTime(t: number): void { startTime = t; }\nexport function setNotificationConfig(c: NotificationConfig): void { notificationConfig = c; }\nexport function setShutdownRequested(v: boolean): void { shutdownRequested = v; }\nexport function setIndexInProgress(v: boolean): void { indexInProgress = v; }\nexport function setLastIndexTime(v: number): void { lastIndexTime = v; }\nexport function setIndexSchedulerTimer(v: ReturnType<typeof setInterval> | null): void { indexSchedulerTimer = v; }\nexport function setEmbedInProgress(v: boolean): void { embedInProgress = v; }\nexport function setLastEmbedTime(v: number): void { lastEmbedTime = v; }\nexport function setEmbedSchedulerTimer(v: ReturnType<typeof setInterval> | null): void { embedSchedulerTimer = v; }\nexport function setVaultIndexInProgress(v: boolean): void { vaultIndexInProgress = v; }\nexport function setLastVaultIndexTime(v: number): void { lastVaultIndexTime = v; }\n"],"mappings":";AAaA,IAAW;AACX,IAAW;AACX,IAAW;AACX,IAAW,YAAY,KAAK,KAAK;;AAOjC,IAAW,kBAAkB;AAC7B,IAAW,gBAAgB;AAC3B,IAAW,sBAA6D;;AAGxE,IAAW,kBAAkB;AAC7B,IAAW,gBAAgB;AAC3B,IAAW,sBAA6D;;AAGxE,IAAW,uBAAuB;AAClC,IAAW,qBAAqB;;AAOhC,IAAW;;;;;;AAWX,IAAW,oBAAoB;AAO/B,SAAgB,cAAc,IAA2C;AAAE,cAAa;;AACxF,SAAgB,kBAAkB,GAAyB;AAAE,kBAAiB;;AAC9E,SAAgB,gBAAgB,GAA0B;AAAE,gBAAe;;AAC3E,SAAgB,aAAa,GAAiB;AAAE,aAAY;;AAC5D,SAAgB,sBAAsB,GAA6B;AAAE,sBAAqB;;AAC1F,SAAgB,qBAAqB,GAAkB;AAAE,qBAAoB;;AAC7E,SAAgB,mBAAmB,GAAkB;AAAE,mBAAkB;;AACzE,SAAgB,iBAAiB,GAAiB;AAAE,iBAAgB;;AACpE,SAAgB,uBAAuB,GAAgD;AAAE,uBAAsB;;AAC/G,SAAgB,mBAAmB,GAAkB;AAAE,mBAAkB;;AACzE,SAAgB,iBAAiB,GAAiB;AAAE,iBAAgB;;AACpE,SAAgB,uBAAuB,GAAgD;AAAE,uBAAsB;;AAC/G,SAAgB,wBAAwB,GAAkB;AAAE,wBAAuB;;AACnF,SAAgB,sBAAsB,GAAiB;AAAE,sBAAqB"}
+{"version":3,"file":"state-CAeyOdfq.mjs","names":[],"sources":["../src/daemon/daemon/state.ts"],"sourcesContent":["/**\n * Shared mutable daemon state — module-level singletons used across all daemon sub-modules.\n */\n\nimport { openRegistry } from \"../../registry/db.js\";\nimport type { StorageBackend } from \"../../storage/interface.js\";\nimport type { NotificationConfig } from \"../../notifications/types.js\";\nimport type { PaiDaemonConfig } from \"../config.js\";\n\n// ---------------------------------------------------------------------------\n// Core singletons (assigned at startup by serve())\n// ---------------------------------------------------------------------------\n\nexport let registryDb: ReturnType<typeof openRegistry>;\nexport let storageBackend: StorageBackend;\nexport let daemonConfig: PaiDaemonConfig;\nexport let startTime = Date.now();\n\n// ---------------------------------------------------------------------------\n// Scheduler state\n// ---------------------------------------------------------------------------\n\n/** True while a project index pass is running. */\nexport let indexInProgress = false;\nexport let lastIndexTime = 0;\nexport let indexSchedulerTimer: ReturnType<typeof setInterval> | null = null;\n\n/** True while an embedding pass is running. */\nexport let embedInProgress = false;\nexport let lastEmbedTime = 0;\nexport let embedSchedulerTimer: ReturnType<typeof setInterval> | null = null;\n\n/** True while a vault index pass is running. */\nexport let vaultIndexInProgress = false;\nexport let lastVaultIndexTime = 0;\n\n// ---------------------------------------------------------------------------\n// Notification state\n// ---------------------------------------------------------------------------\n\n/** Mutable notification config — loaded from disk at startup, patchable at runtime. */\nexport let notificationConfig: NotificationConfig;\n\n// ---------------------------------------------------------------------------\n// Graceful shutdown flag\n// ---------------------------------------------------------------------------\n\n/**\n * Set to true when a SIGTERM/SIGINT is received so that long-running loops\n * (embed, index) can detect the signal and exit their inner loops before the\n * pool/backend is closed.\n */\nexport let shutdownRequested = false;\n\n// ---------------------------------------------------------------------------\n// Setters (TypeScript requires assignment functions for exported `let` vars\n// that need to be mutated across module boundaries)\n// ---------------------------------------------------------------------------\n\nexport function setRegistryDb(db: ReturnType<typeof openRegistry>): void { registryDb = db; }\nexport function setStorageBackend(b: StorageBackend): void { storageBackend = b; }\nexport function setDaemonConfig(c: PaiDaemonConfig): void { daemonConfig = c; }\nexport function setStartTime(t: number): void { startTime = t; }\nexport function setNotificationConfig(c: NotificationConfig): void { notificationConfig = c; }\nexport function setShutdownRequested(v: boolean): void { shutdownRequested = v; }\nexport function setIndexInProgress(v: boolean): void { indexInProgress = v; }\nexport function setLastIndexTime(v: number): void { lastIndexTime = v; }\nexport function setIndexSchedulerTimer(v: ReturnType<typeof setInterval> | null): void { indexSchedulerTimer = v; }\nexport function setEmbedInProgress(v: boolean): void { embedInProgress = v; }\nexport function setLastEmbedTime(v: number): void { lastEmbedTime = v; }\nexport function setEmbedSchedulerTimer(v: ReturnType<typeof setInterval> | null): void { embedSchedulerTimer = v; }\nexport function setVaultIndexInProgress(v: boolean): void { vaultIndexInProgress = v; }\nexport function setLastVaultIndexTime(v: number): void { lastVaultIndexTime = v; }\n"],"mappings":";AAaA,IAAW;AACX,IAAW;AACX,IAAW;AACX,IAAW,YAAY,KAAK,KAAK;;AAOjC,IAAW,kBAAkB;AAC7B,IAAW,gBAAgB;AAC3B,IAAW,sBAA6D;;AAGxE,IAAW,kBAAkB;AAC7B,IAAW,gBAAgB;AAC3B,IAAW,sBAA6D;;AAGxE,IAAW,uBAAuB;AAClC,IAAW,qBAAqB;;AAOhC,IAAW;;;;;;AAWX,IAAW,oBAAoB;AAO/B,SAAgB,cAAc,IAA2C;AAAE,cAAa;;AACxF,SAAgB,kBAAkB,GAAyB;AAAE,kBAAiB;;AAC9E,SAAgB,gBAAgB,GAA0B;AAAE,gBAAe;;AAC3E,SAAgB,aAAa,GAAiB;AAAE,aAAY;;AAC5D,SAAgB,sBAAsB,GAA6B;AAAE,sBAAqB;;AAC1F,SAAgB,qBAAqB,GAAkB;AAAE,qBAAoB;;AAC7E,SAAgB,mBAAmB,GAAkB;AAAE,mBAAkB;;AACzE,SAAgB,iBAAiB,GAAiB;AAAE,iBAAgB;;AACpE,SAAgB,uBAAuB,GAAgD;AAAE,uBAAsB;;AAC/G,SAAgB,mBAAmB,GAAkB;AAAE,mBAAkB;;AACzE,SAAgB,iBAAiB,GAAiB;AAAE,iBAAgB;;AACpE,SAAgB,uBAAuB,GAAgD;AAAE,uBAAsB;;AAC/G,SAAgB,wBAAwB,GAAkB;AAAE,wBAAuB;;AACnF,SAAgB,sBAAsB,GAAiB;AAAE,sBAAqB"}

package/dist/{state-8Hm9E4tW.mjs → state-Ca9F_sZc.mjs}

@@ -1,3 +1,3 @@
-import { C as setStorageBackend, D as storageBackend, E as startTime, O as vaultIndexInProgress, S as setStartTime, T as shutdownRequested, _ as setLastIndexTime, a as indexSchedulerTimer, b as setRegistryDb, c as lastVaultIndexTime, d as setDaemonConfig, f as setEmbedInProgress, g as setLastEmbedTime, h as setIndexSchedulerTimer, i as indexInProgress, l as notificationConfig, m as setIndexInProgress, n as embedInProgress, o as lastEmbedTime, p as setEmbedSchedulerTimer, r as embedSchedulerTimer, s as lastIndexTime, t as daemonConfig, u as registryDb, v as setLastVaultIndexTime, w as setVaultIndexInProgress, x as setShutdownRequested, y as setNotificationConfig } from "./state-BY2L6-vX.mjs";
+import { C as setStorageBackend, D as storageBackend, E as startTime, O as vaultIndexInProgress, S as setStartTime, T as shutdownRequested, _ as setLastIndexTime, a as indexSchedulerTimer, b as setRegistryDb, c as lastVaultIndexTime, d as setDaemonConfig, f as setEmbedInProgress, g as setLastEmbedTime, h as setIndexSchedulerTimer, i as indexInProgress, l as notificationConfig, m as setIndexInProgress, n as embedInProgress, o as lastEmbedTime, p as setEmbedSchedulerTimer, r as embedSchedulerTimer, s as lastIndexTime, t as daemonConfig, u as registryDb, v as setLastVaultIndexTime, w as setVaultIndexInProgress, x as setShutdownRequested, y as setNotificationConfig } from "./state-CAeyOdfq.mjs";
 
 export { lastVaultIndexTime, notificationConfig };

package/dist/{themes-BN0a2duq.mjs → themes-BI4GMRP9.mjs}

@@ -145,4 +145,4 @@ async function zettelThemes(backend, opts) {
 
 //#endregion
 export { zettelThemes as t };
-//# sourceMappingURL=themes-BN0a2duq.mjs.map
+//# sourceMappingURL=themes-BI4GMRP9.mjs.map

package/dist/{themes-BN0a2duq.mjs.map → themes-BI4GMRP9.mjs.map}

@@ -1 +1 @@
-{"version":3,"file":"themes-BN0a2duq.mjs","names":[],"sources":["../src/zettelkasten/themes.ts"],"sourcesContent":["import type { StorageBackend } from \"../storage/interface.js\";\nimport { deserializeEmbedding, cosineSimilarity } from \"../memory/embeddings.js\";\nimport { STOP_WORDS } from \"../utils/stop-words.js\";\n\nexport interface ThemeOptions {\n  vaultProjectId: number;\n  lookbackDays?: number;\n  minClusterSize?: number;\n  maxThemes?: number;\n  similarityThreshold?: number;\n}\n\nexport interface ThemeCluster {\n  id: number;\n  label: string;\n  notes: Array<{\n    path: string;\n    title: string | null;\n  }>;\n  size: number;\n  folderDiversity: number;\n  avgRecency: number;\n  linkedRatio: number;\n  suggestIndexNote: boolean;\n}\n\nexport interface ThemeResult {\n  themes: ThemeCluster[];\n  totalNotesAnalyzed: number;\n  timeWindow: { from: number; to: number };\n}\n\nconst MAX_CHUNKS = 5000;\n\n// STOP_WORDS imported from utils/stop-words.ts\n\nfunction getTopFolder(vaultPath: string): string {\n  const parts = vaultPath.split(\"/\");\n  return parts.length > 1 ? parts[0] : \"\";\n}\n\nfunction generateLabel(titles: Array<string | null>): string {\n  const wordCounts = new Map<string, number>();\n  for (const title of titles) {\n    if (!title) continue;\n    const words = title\n      .toLowerCase()\n      .replace(/[^a-z0-9\\s]/g, \" \")\n      .split(/\\s+/)\n      .filter((w) => w.length > 2 && !STOP_WORDS.has(w));\n    for (const word of words) {\n      wordCounts.set(word, (wordCounts.get(word) ?? 0) + 1);\n    }\n  }\n  const sorted = [...wordCounts.entries()].sort((a, b) => b[1] - a[1]);\n  return sorted\n    .slice(0, 3)\n    .map(([w]) => w)\n    .join(\" / \");\n}\n\nasync function computeLinkedRatio(backend: StorageBackend, paths: string[]): Promise<number> {\n  if (paths.length < 2) return 0;\n  const totalPairs = (paths.length * (paths.length - 1)) / 2;\n  const pathSet = new Set(paths);\n  let linkedPairs = 0;\n\n  for (const path of paths) {\n    const links = await backend.getLinksFromSource(path);\n    for (const link of links) {\n      if (link.targetPath && pathSet.has(link.targetPath)) {\n        linkedPairs++;\n      }\n    }\n  }\n\n  // Each bidirectional pair might be counted once per direction; divide by 2 to normalize\n  const uniquePairs = linkedPairs / 2;\n  return Math.min(1, uniquePairs / totalPairs);\n}\n\ntype ClusterNode = {\n  paths: string[];\n  titles: Array<string | null>;\n  indexedAts: number[];\n  centroid: Float32Array;\n};\n\nfunction averageEmbeddings(embeddings: Float32Array[]): Float32Array {\n  if (embeddings.length === 0) return new Float32Array(0);\n  const dim = embeddings[0].length;\n  const sum = new Float32Array(dim);\n  for (const vec of embeddings) {\n    for (let i = 0; i < dim; i++) {\n      sum[i] += vec[i];\n    }\n  }\n  const avg = new Float32Array(dim);\n  for (let i = 0; i < dim; i++) {\n    avg[i] = sum[i] / embeddings.length;\n  }\n  return avg;\n}\n\n/**\n * Detect emerging themes in recently-modified notes using agglomerative single-linkage\n * clustering of note-level embeddings.\n */\nexport async function zettelThemes(\n  backend: StorageBackend,\n  opts: ThemeOptions,\n): Promise<ThemeResult> {\n  const lookbackDays = opts.lookbackDays ?? 30;\n  const minClusterSize = opts.minClusterSize ?? 3;\n  const maxThemes = opts.maxThemes ?? 10;\n  const similarityThreshold = opts.similarityThreshold ?? 0.65;\n\n  const now = Date.now();\n  const from = now - lookbackDays * 86400000;\n\n  // Step 1: get recent notes\n  const recentFiles = await backend.getRecentVaultFiles(from);\n  const recentNotes = recentFiles.map(f => ({ vault_path: f.vaultPath, title: f.title, indexed_at: f.indexedAt }));\n\n  // Step 2: get file-level embeddings from memory_chunks\n  const chunkRows = await backend.getChunksWithEmbeddings(opts.vaultProjectId, MAX_CHUNKS);\n\n  const embeddingsByPath = new Map<string, Float32Array[]>();\n  for (const row of chunkRows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const arr = embeddingsByPath.get(row.path);\n    if (!arr) {\n      embeddingsByPath.set(row.path, [vec]);\n    } else {\n      arr.push(vec);\n    }\n  }\n\n  const fileEmbeddings = new Map<string, Float32Array>();\n  for (const [path, vecs] of embeddingsByPath) {\n    fileEmbeddings.set(path, averageEmbeddings(vecs));\n  }\n\n  // Step 3: build initial clusters — only include notes that have embeddings\n  const clusters: ClusterNode[] = [];\n  for (const note of recentNotes) {\n    const embedding = fileEmbeddings.get(note.vault_path);\n    if (!embedding) continue;\n    clusters.push({\n      paths: [note.vault_path],\n      titles: [note.title],\n      indexedAts: [note.indexed_at],\n      centroid: embedding,\n    });\n  }\n\n  const totalNotesAnalyzed = clusters.length;\n\n  // Step 4: agglomerative single-linkage clustering\n  // Stop when no two clusters have similarity >= threshold\n  let merged = true;\n  while (merged && clusters.length > 1) {\n    merged = false;\n    let bestSim = similarityThreshold;\n    let bestI = -1;\n    let bestJ = -1;\n\n    for (let i = 0; i < clusters.length; i++) {\n      for (let j = i + 1; j < clusters.length; j++) {\n        const sim = cosineSimilarity(clusters[i].centroid, clusters[j].centroid);\n        if (sim > bestSim) {\n          bestSim = sim;\n          bestI = i;\n          bestJ = j;\n        }\n      }\n    }\n\n    if (bestI === -1) break;\n\n    // Merge cluster j into cluster i\n    const ci = clusters[bestI];\n    const cj = clusters[bestJ];\n    const mergedPaths = [...ci.paths, ...cj.paths];\n    const mergedTitles = [...ci.titles, ...cj.titles];\n    const mergedIndexedAts = [...ci.indexedAts, ...cj.indexedAts];\n\n    // Recompute centroid from averaged embeddings of all member paths\n    const memberEmbeddings: Float32Array[] = [];\n    for (const p of mergedPaths) {\n      const emb = fileEmbeddings.get(p);\n      if (emb) memberEmbeddings.push(emb);\n    }\n\n    clusters[bestI] = {\n      paths: mergedPaths,\n      titles: mergedTitles,\n      indexedAts: mergedIndexedAts,\n      centroid: averageEmbeddings(memberEmbeddings),\n    };\n\n    clusters.splice(bestJ, 1);\n    merged = true;\n  }\n\n  // Step 5: filter and annotate clusters\n  const themes: ThemeCluster[] = [];\n  let clusterIndex = 0;\n\n  for (const cluster of clusters) {\n    if (cluster.paths.length < minClusterSize) continue;\n\n    const label = generateLabel(cluster.titles) || `Theme ${clusterIndex + 1}`;\n    const avgRecency =\n      cluster.indexedAts.reduce((sum, t) => sum + t, 0) / cluster.indexedAts.length;\n\n    const uniqueFolders = new Set(cluster.paths.map(getTopFolder));\n    const folderDiversity = uniqueFolders.size / cluster.paths.length;\n\n    const linkedRatio = await computeLinkedRatio(backend, cluster.paths);\n    const suggestIndexNote = linkedRatio < 0.3 && cluster.paths.length >= 5;\n\n    themes.push({\n      id: clusterIndex++,\n      label,\n      notes: cluster.paths.map((path, idx) => ({\n        path,\n        title: cluster.titles[idx],\n      })),\n      size: cluster.paths.length,\n      folderDiversity,\n      avgRecency,\n      linkedRatio,\n      suggestIndexNote,\n    });\n  }\n\n  // Step 6: rank by size * folderDiversity * recency_ratio\n  themes.sort(\n    (a, b) =>\n      b.size * b.folderDiversity * (b.avgRecency / now) -\n      a.size * a.folderDiversity * (a.avgRecency / now),\n  );\n\n  return {\n    themes: themes.slice(0, maxThemes),\n    totalNotesAnalyzed,\n    timeWindow: { from, to: now },\n  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+{"version":3,"file":"themes-BI4GMRP9.mjs","names":[],"sources":["../src/zettelkasten/themes.ts"],"sourcesContent":["import type { StorageBackend } from \"../storage/interface.js\";\nimport { deserializeEmbedding, cosineSimilarity } from \"../memory/embeddings.js\";\nimport { STOP_WORDS } from \"../utils/stop-words.js\";\n\nexport interface ThemeOptions {\n  vaultProjectId: number;\n  lookbackDays?: number;\n  minClusterSize?: number;\n  maxThemes?: number;\n  similarityThreshold?: number;\n}\n\nexport interface ThemeCluster {\n  id: number;\n  label: string;\n  notes: Array<{\n    path: string;\n    title: string | null;\n  }>;\n  size: number;\n  folderDiversity: number;\n  avgRecency: number;\n  linkedRatio: number;\n  suggestIndexNote: boolean;\n}\n\nexport interface ThemeResult {\n  themes: ThemeCluster[];\n  totalNotesAnalyzed: number;\n  timeWindow: { from: number; to: number };\n}\n\nconst MAX_CHUNKS = 5000;\n\n// STOP_WORDS imported from utils/stop-words.ts\n\nfunction getTopFolder(vaultPath: string): string {\n  const parts = vaultPath.split(\"/\");\n  return parts.length > 1 ? parts[0] : \"\";\n}\n\nfunction generateLabel(titles: Array<string | null>): string {\n  const wordCounts = new Map<string, number>();\n  for (const title of titles) {\n    if (!title) continue;\n    const words = title\n      .toLowerCase()\n      .replace(/[^a-z0-9\\s]/g, \" \")\n      .split(/\\s+/)\n      .filter((w) => w.length > 2 && !STOP_WORDS.has(w));\n    for (const word of words) {\n      wordCounts.set(word, (wordCounts.get(word) ?? 0) + 1);\n    }\n  }\n  const sorted = [...wordCounts.entries()].sort((a, b) => b[1] - a[1]);\n  return sorted\n    .slice(0, 3)\n    .map(([w]) => w)\n    .join(\" / \");\n}\n\nasync function computeLinkedRatio(backend: StorageBackend, paths: string[]): Promise<number> {\n  if (paths.length < 2) return 0;\n  const totalPairs = (paths.length * (paths.length - 1)) / 2;\n  const pathSet = new Set(paths);\n  let linkedPairs = 0;\n\n  for (const path of paths) {\n    const links = await backend.getLinksFromSource(path);\n    for (const link of links) {\n      if (link.targetPath && pathSet.has(link.targetPath)) {\n        linkedPairs++;\n      }\n    }\n  }\n\n  // Each bidirectional pair might be counted once per direction; divide by 2 to normalize\n  const uniquePairs = linkedPairs / 2;\n  return Math.min(1, uniquePairs / totalPairs);\n}\n\ntype ClusterNode = {\n  paths: string[];\n  titles: Array<string | null>;\n  indexedAts: number[];\n  centroid: Float32Array;\n};\n\nfunction averageEmbeddings(embeddings: Float32Array[]): Float32Array {\n  if (embeddings.length === 0) return new Float32Array(0);\n  const dim = embeddings[0].length;\n  const sum = new Float32Array(dim);\n  for (const vec of embeddings) {\n    for (let i = 0; i < dim; i++) {\n      sum[i] += vec[i];\n    }\n  }\n  const avg = new Float32Array(dim);\n  for (let i = 0; i < dim; i++) {\n    avg[i] = sum[i] / embeddings.length;\n  }\n  return avg;\n}\n\n/**\n * Detect emerging themes in recently-modified notes using agglomerative single-linkage\n * clustering of note-level embeddings.\n */\nexport async function zettelThemes(\n  backend: StorageBackend,\n  opts: ThemeOptions,\n): Promise<ThemeResult> {\n  const lookbackDays = opts.lookbackDays ?? 30;\n  const minClusterSize = opts.minClusterSize ?? 3;\n  const maxThemes = opts.maxThemes ?? 10;\n  const similarityThreshold = opts.similarityThreshold ?? 0.65;\n\n  const now = Date.now();\n  const from = now - lookbackDays * 86400000;\n\n  // Step 1: get recent notes\n  const recentFiles = await backend.getRecentVaultFiles(from);\n  const recentNotes = recentFiles.map(f => ({ vault_path: f.vaultPath, title: f.title, indexed_at: f.indexedAt }));\n\n  // Step 2: get file-level embeddings from memory_chunks\n  const chunkRows = await backend.getChunksWithEmbeddings(opts.vaultProjectId, MAX_CHUNKS);\n\n  const embeddingsByPath = new Map<string, Float32Array[]>();\n  for (const row of chunkRows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const arr = embeddingsByPath.get(row.path);\n    if (!arr) {\n      embeddingsByPath.set(row.path, [vec]);\n    } else {\n      arr.push(vec);\n    }\n  }\n\n  const fileEmbeddings = new Map<string, Float32Array>();\n  for (const [path, vecs] of embeddingsByPath) {\n    fileEmbeddings.set(path, averageEmbeddings(vecs));\n  }\n\n  // Step 3: build initial clusters — only include notes that have embeddings\n  const clusters: ClusterNode[] = [];\n  for (const note of recentNotes) {\n    const embedding = fileEmbeddings.get(note.vault_path);\n    if (!embedding) continue;\n    clusters.push({\n      paths: [note.vault_path],\n      titles: [note.title],\n      indexedAts: [note.indexed_at],\n      centroid: embedding,\n    });\n  }\n\n  const totalNotesAnalyzed = clusters.length;\n\n  // Step 4: agglomerative single-linkage clustering\n  // Stop when no two clusters have similarity >= threshold\n  let merged = true;\n  while (merged && clusters.length > 1) {\n    merged = false;\n    let bestSim = similarityThreshold;\n    let bestI = -1;\n    let bestJ = -1;\n\n    for (let i = 0; i < clusters.length; i++) {\n      for (let j = i + 1; j < clusters.length; j++) {\n        const sim = cosineSimilarity(clusters[i].centroid, clusters[j].centroid);\n        if (sim > bestSim) {\n          bestSim = sim;\n          bestI = i;\n          bestJ = j;\n        }\n      }\n    }\n\n    if (bestI === -1) break;\n\n    // Merge cluster j into cluster i\n    const ci = clusters[bestI];\n    const cj = clusters[bestJ];\n    const mergedPaths = [...ci.paths, ...cj.paths];\n    const mergedTitles = [...ci.titles, ...cj.titles];\n    const mergedIndexedAts = [...ci.indexedAts, ...cj.indexedAts];\n\n    // Recompute centroid from averaged embeddings of all member paths\n    const memberEmbeddings: Float32Array[] = [];\n    for (const p of mergedPaths) {\n      const emb = fileEmbeddings.get(p);\n      if (emb) memberEmbeddings.push(emb);\n    }\n\n    clusters[bestI] = {\n      paths: mergedPaths,\n      titles: mergedTitles,\n      indexedAts: mergedIndexedAts,\n      centroid: averageEmbeddings(memberEmbeddings),\n    };\n\n    clusters.splice(bestJ, 1);\n    merged = true;\n  }\n\n  // Step 5: filter and annotate clusters\n  const themes: ThemeCluster[] = [];\n  let clusterIndex = 0;\n\n  for (const cluster of clusters) {\n    if (cluster.paths.length < minClusterSize) continue;\n\n    const label = generateLabel(cluster.titles) || `Theme ${clusterIndex + 1}`;\n    const avgRecency =\n      cluster.indexedAts.reduce((sum, t) => sum + t, 0) / cluster.indexedAts.length;\n\n    const uniqueFolders = new Set(cluster.paths.map(getTopFolder));\n    const folderDiversity = uniqueFolders.size / cluster.paths.length;\n\n    const linkedRatio = await computeLinkedRatio(backend, cluster.paths);\n    const suggestIndexNote = linkedRatio < 0.3 && cluster.paths.length >= 5;\n\n    themes.push({\n      id: clusterIndex++,\n      label,\n      notes: cluster.paths.map((path, idx) => ({\n        path,\n        title: cluster.titles[idx],\n      })),\n      size: cluster.paths.length,\n      folderDiversity,\n      avgRecency,\n      linkedRatio,\n      suggestIndexNote,\n    });\n  }\n\n  // Step 6: rank by size * folderDiversity * recency_ratio\n  themes.sort(\n    (a, b) =>\n      b.size * b.folderDiversity * (b.avgRecency / now) -\n      a.size * a.folderDiversity * (a.avgRecency / now),\n  );\n\n  return {\n    themes: themes.slice(0, maxThemes),\n    totalNotesAnalyzed,\n    timeWindow: { from, to: now },\n  };\n}\n"],"mappings":";;;;AAgCA,MAAM,aAAa;AAInB,SAAS,aAAa,WAA2B;CAC/C,MAAM,QAAQ,UAAU,MAAM,IAAI;AAClC,QAAO,MAAM,SAAS,IAAI,MAAM,KAAK;;AAGvC,SAAS,cAAc,QAAsC;CAC3D,MAAM,6BAAa,IAAI,KAAqB;AAC5C,MAAK,MAAM,SAAS,QAAQ;AAC1B,MAAI,CAAC,MAAO;EACZ,MAAM,QAAQ,MACX,aAAa,CACb,QAAQ,gBAAgB,IAAI,CAC5B,MAAM,MAAM,CACZ,QAAQ,MAAM,EAAE,SAAS,KAAK,CAAC,WAAW,IAAI,EAAE,CAAC;AACpD,OAAK,MAAM,QAAQ,MACjB,YAAW,IAAI,OAAO,WAAW,IAAI,KAAK,IAAI,KAAK,EAAE;;AAIzD,QADe,CAAC,GAAG,WAAW,SAAS,CAAC,CAAC,MAAM,GAAG,MAAM,EAAE,KAAK,EAAE,GAAG,CAEjE,MAAM,GAAG,EAAE,CACX,KAAK,CAAC,OAAO,EAAE,CACf,KAAK,MAAM;;AAGhB,eAAe,mBAAmB,SAAyB,OAAkC;AAC3F,KAAI,MAAM,SAAS,EAAG,QAAO;CAC7B,MAAM,aAAc,MAAM,UAAU,MAAM,SAAS,KAAM;CACzD,MAAM,UAAU,IAAI,IAAI,MAAM;CAC9B,IAAI,cAAc;AAElB,MAAK,MAAM,QAAQ,OAAO;EACxB,MAAM,QAAQ,MAAM,QAAQ,mBAAmB,KAAK;AACpD,OAAK,MAAM,QAAQ,MACjB,KAAI,KAAK,cAAc,QAAQ,IAAI,KAAK,WAAW,CACjD;;CAMN,MAAM,cAAc,cAAc;AAClC,QAAO,KAAK,IAAI,GAAG,cAAc,WAAW;;AAU9C,SAAS,kBAAkB,YAA0C;AACnE,KAAI,WAAW,WAAW,EAAG,QAAO,IAAI,aAAa,EAAE;CACvD,MAAM,MAAM,WAAW,GAAG;CAC1B,MAAM,MAAM,IAAI,aAAa,IAAI;AACjC,MAAK,MAAM,OAAO,WAChB,MAAK,IAAI,IAAI,GAAG,IAAI,KAAK,IACvB,KAAI,MAAM,IAAI;CAGlB,MAAM,MAAM,IAAI,aAAa,IAAI;AACjC,MAAK,IAAI,IAAI,GAAG,IAAI,KAAK,IACvB,KAAI,KAAK,IAAI,KAAK,WAAW;AAE/B,QAAO;;;;;;AAOT,eAAsB,aACpB,SACA,MACsB;CACtB,MAAM,eAAe,KAAK,gBAAgB;CAC1C,MAAM,iBAAiB,KAAK,kBAAkB;CAC9C,MAAM,YAAY,KAAK,aAAa;CACpC,MAAM,sBAAsB,KAAK,uBAAuB;CAExD,MAAM,MAAM,KAAK,KAAK;CACtB,MAAM,OAAO,MAAM,eAAe;CAIlC,MAAM,eADc,MAAM,QAAQ,oBAAoB,KAAK,EAC3B,KAAI,OAAM;EAAE,YAAY,EAAE;EAAW,OAAO,EAAE;EAAO,YAAY,EAAE;EAAW,EAAE;CAGhH,MAAM,YAAY,MAAM,QAAQ,wBAAwB,KAAK,gBAAgB,WAAW;CAExF,MAAM,mCAAmB,IAAI,KAA6B;AAC1D,MAAK,MAAM,OAAO,WAAW;EAC3B,MAAM,MAAM,qBAAqB,IAAI,UAAU;EAC/C,MAAM,MAAM,iBAAiB,IAAI,IAAI,KAAK;AAC1C,MAAI,CAAC,IACH,kBAAiB,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC;MAErC,KAAI,KAAK,IAAI;;CAIjB,MAAM,iCAAiB,IAAI,KAA2B;AACtD,MAAK,MAAM,CAAC,MAAM,SAAS,iBACzB,gBAAe,IAAI,MAAM,kBAAkB,KAAK,CAAC;CAInD,MAAM,WAA0B,EAAE;AAClC,MAAK,MAAM,QAAQ,aAAa;EAC9B,MAAM,YAAY,eAAe,IAAI,KAAK,WAAW;AACrD,MAAI,CAAC,UAAW;AAChB,WAAS,KAAK;GACZ,OAAO,CAAC,KAAK,WAAW;GACxB,QAAQ,CAAC,KAAK,MAAM;GACpB,YAAY,CAAC,KAAK,WAAW;GAC7B,UAAU;GACX,CAAC;;CAGJ,MAAM,qBAAqB,SAAS;CAIpC,IAAI,SAAS;AACb,QAAO,UAAU,SAAS,SAAS,GAAG;AACpC,WAAS;EACT,IAAI,UAAU;EACd,IAAI,QAAQ;EACZ,IAAI,QAAQ;AAEZ,OAAK,IAAI,IAAI,GAAG,IAAI,SAAS,QAAQ,IACnC,MAAK,IAAI,IAAI,IAAI,GAAG,IAAI,SAAS,QAAQ,KAAK;GAC5C,MAAM,MAAM,iBAAiB,SAAS,GAAG,UAAU,SAAS,GAAG,SAAS;AACxE,OAAI,MAAM,SAAS;AACjB,cAAU;AACV,YAAQ;AACR,YAAQ;;;AAKd,MAAI,UAAU,GAAI;EAGlB,MAAM,KAAK,SAAS;EACpB,MAAM,KAAK,SAAS;EACpB,MAAM,cAAc,CAAC,GAAG,GAAG,OAAO,GAAG,GAAG,MAAM;EAC9C,MAAM,eAAe,CAAC,GAAG,GAAG,QAAQ,GAAG,GAAG,OAAO;EACjD,MAAM,mBAAmB,CAAC,GAAG,GAAG,YAAY,GAAG,GAAG,WAAW;EAG7D,MAAM,mBAAmC,EAAE;AAC3C,OAAK,MAAM,KAAK,aAAa;GAC3B,MAAM,MAAM,eAAe,IAAI,EAAE;AACjC,OAAI,IAAK,kBAAiB,KAAK,IAAI;;AAGrC,WAAS,SAAS;GAChB,OAAO;GACP,QAAQ;GACR,YAAY;GACZ,UAAU,kBAAkB,iBAAiB;GAC9C;AAED,WAAS,OAAO,OAAO,EAAE;AACzB,WAAS;;CAIX,MAAM,SAAyB,EAAE;CACjC,IAAI,eAAe;AAEnB,MAAK,MAAM,WAAW,UAAU;AAC9B,MAAI,QAAQ,MAAM,SAAS,eAAgB;EAE3C,MAAM,QAAQ,cAAc,QAAQ,OAAO,IAAI,SAAS,eAAe;EACvE,MAAM,aACJ,QAAQ,WAAW,QAAQ,KAAK,MAAM,MAAM,GAAG,EAAE,GAAG,QAAQ,WAAW;EAGzE,MAAM,kBADgB,IAAI,IAAI,QAAQ,MAAM,IAAI,aAAa,CAAC,CACxB,OAAO,QAAQ,MAAM;EAE3D,MAAM,cAAc,MAAM,mBAAmB,SAAS,QAAQ,MAAM;EACpE,MAAM,mBAAmB,cAAc,MAAO,QAAQ,MAAM,UAAU;AAEtE,SAAO,KAAK;GACV,IAAI;GACJ;GACA,OAAO,QAAQ,MAAM,KAAK,MAAM,SAAS;IACvC;IACA,OAAO,QAAQ,OAAO;IACvB,EAAE;GACH,MAAM,QAAQ,MAAM;GACpB;GACA;GACA;GACA;GACD,CAAC;;AAIJ,QAAO,MACJ,GAAG,MACF,EAAE,OAAO,EAAE,mBAAmB,EAAE,aAAa,OAC7C,EAAE,OAAO,EAAE,mBAAmB,EAAE,aAAa,KAChD;AAED,QAAO;EACL,QAAQ,OAAO,MAAM,GAAG,UAAU;EAClC;EACA,YAAY;GAAE;GAAM,IAAI;GAAK;EAC9B"}

package/dist/{tools-CGPqpU3A.mjs → tools-Bp7hj6OW.mjs}

@@ -1,5 +1,5 @@
 import "./embeddings-DOLZnT1X.mjs";
 import "./search-Rpk1cSBC.mjs";
-import { A as formatProject, C as toolProjectInfo, D as toolMemoryGet, E as combineHybridResults, O as toolMemorySearch, S as toolProjectHealth, T as toolProjectTodo, _ as toolZettelThemes, a as toolMemoryWakeup, b as toolSessionRoute, c as toolKgInvalidate, d as toolZettelConverse, f as toolZettelExplore, g as toolZettelSurprise, h as toolZettelSuggest, i as toolMemoryTaxonomy, j as lookupProjectId, k as detectProjectFromPath, l as toolKgQuery, m as toolZettelHealth, n as toolMemoryFeedback, o as toolKgAdd, p as toolZettelGodNotes, r as toolMemoryTunnels, s as toolKgContradictions, t as toolMemoryKgSearch, u as toolZettelCommunities, v as toolRegistrySearch, w as toolProjectList, x as toolProjectDetect, y as toolSessionList } from "./tools-y2bJpKom.mjs";
+import { A as formatProject, C as toolProjectInfo, D as toolMemoryGet, E as combineHybridResults, O as toolMemorySearch, S as toolProjectHealth, T as toolProjectTodo, _ as toolZettelThemes, a as toolMemoryWakeup, b as toolSessionRoute, c as toolKgInvalidate, d as toolZettelConverse, f as toolZettelExplore, g as toolZettelSurprise, h as toolZettelSuggest, i as toolMemoryTaxonomy, j as lookupProjectId, k as detectProjectFromPath, l as toolKgQuery, m as toolZettelHealth, n as toolMemoryFeedback, o as toolKgAdd, p as toolZettelGodNotes, r as toolMemoryTunnels, s as toolKgContradictions, t as toolMemoryKgSearch, u as toolZettelCommunities, v as toolRegistrySearch, w as toolProjectList, x as toolProjectDetect, y as toolSessionList } from "./tools-DGcB3o_S.mjs";
 
 export { toolKgAdd, toolKgContradictions, toolKgInvalidate, toolKgQuery, toolMemoryTunnels, toolZettelCommunities, toolZettelConverse, toolZettelExplore, toolZettelGodNotes, toolZettelHealth, toolZettelSuggest, toolZettelSurprise, toolZettelThemes };

package/dist/{tools-y2bJpKom.mjs → tools-DGcB3o_S.mjs}

@@ -104,7 +104,7 @@ async function toolMemorySearch(registryDb, federation, params, searchDefaults)
 			} else results = searchMemory(federation, params.query, searchOpts);
 		}
 		try {
-			const { applyLinkBoost } = await import("./link-boost-QFLrJwD6.mjs");
+			const { applyLinkBoost } = await import("./link-boost-HkG7JWZR.mjs");
 			const paths = [...new Set(results.map((r) => r.path))];
 			if (isBackend(federation) && paths.length > 1) {
 				const edges = [];
@@ -151,7 +151,7 @@ async function toolMemorySearch(registryDb, federation, params, searchDefaults)
 			return `${header}\n${raw.length > snippetLength ? raw.slice(0, snippetLength) + "..." : raw}`;
 		}).join(useCompact ? "\n" : "\n\n---\n\n");
 		try {
-			const { saveQueryResult } = await import("./query-feedback-DhyLOe5S.mjs");
+			const { saveQueryResult } = await import("./query-feedback-DSVyHtrG.mjs");
 			saveQueryResult({
 				query: params.query,
 				timestamp: Date.now(),
@@ -676,7 +676,7 @@ function toolSessionList(registryDb, params) {
 */
 async function toolSessionRoute(registryDb, federation, params) {
 	try {
-		const { autoRoute, formatAutoRouteJson } = await import("./auto-route-DM7GhJ8y.mjs");
+		const { autoRoute, formatAutoRouteJson } = await import("./auto-route-BlWOWT4z.mjs");
 		const result = await autoRoute(registryDb, federation, params.cwd, params.context);
 		if (!result) return { content: [{
 			type: "text",
@@ -740,7 +740,7 @@ function toolRegistrySearch(registryDb, params) {
 //#region src/mcp/tools/zettel.ts
 async function toolZettelExplore(backend, params) {
 	try {
-		const { zettelExplore } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelExplore } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelExplore(backend, {
 			startNote: params.start_note,
 			depth: params.depth,
@@ -763,7 +763,7 @@ async function toolZettelExplore(backend, params) {
 }
 async function toolZettelHealth(backend, params) {
 	try {
-		const { zettelHealth } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelHealth } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelHealth(backend, {
 			scope: params.scope,
 			projectPath: params.project_path,
@@ -786,7 +786,7 @@ async function toolZettelHealth(backend, params) {
 }
 async function toolZettelSurprise(backend, params) {
 	try {
-		const { zettelSurprise } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelSurprise } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const results = await zettelSurprise(backend, {
 			referencePath: params.reference_path,
 			vaultProjectId: params.vault_project_id,
@@ -810,7 +810,7 @@ async function toolZettelSurprise(backend, params) {
 }
 async function toolZettelSuggest(backend, params) {
 	try {
-		const { zettelSuggest } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelSuggest } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const results = await zettelSuggest(backend, {
 			notePath: params.note_path,
 			vaultProjectId: params.vault_project_id,
@@ -833,7 +833,7 @@ async function toolZettelSuggest(backend, params) {
 }
 async function toolZettelConverse(backend, params) {
 	try {
-		const { zettelConverse } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelConverse } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelConverse(backend, {
 			question: params.question,
 			vaultProjectId: params.vault_project_id,
@@ -841,7 +841,7 @@ async function toolZettelConverse(backend, params) {
 			limit: params.limit
 		});
 		try {
-			const { saveQueryResult } = await import("./query-feedback-DhyLOe5S.mjs");
+			const { saveQueryResult } = await import("./query-feedback-DSVyHtrG.mjs");
 			saveQueryResult({
 				query: params.question,
 				timestamp: Date.now(),
@@ -869,7 +869,7 @@ async function toolZettelConverse(backend, params) {
 }
 async function toolZettelThemes(backend, params) {
 	try {
-		const { zettelThemes } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelThemes } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelThemes(backend, {
 			vaultProjectId: params.vault_project_id,
 			lookbackDays: params.lookback_days,
@@ -893,7 +893,7 @@ async function toolZettelThemes(backend, params) {
 }
 async function toolZettelGodNotes(backend, params) {
 	try {
-		const { zettelGodNotes } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelGodNotes } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelGodNotes(backend, {
 			limit: params.limit,
 			minInbound: params.min_inbound
@@ -914,7 +914,7 @@ async function toolZettelGodNotes(backend, params) {
 }
 async function toolZettelCommunities(backend, params) {
 	try {
-		const { zettelCommunities } = await import("./zettelkasten-vo7psPdT.mjs");
+		const { zettelCommunities } = await import("./zettelkasten-m5QPtb-L.mjs");
 		const result = await zettelCommunities(backend, {
 			minSize: params.min_size,
 			maxCommunities: params.max_communities,
@@ -1914,4 +1914,4 @@ async function toolMemoryKgSearch(federationDb, pool, params) {
 
 //#endregion
 export { formatProject as A, toolProjectInfo as C, toolMemoryGet as D, combineHybridResults as E, toolMemorySearch as O, toolProjectHealth as S, toolProjectTodo as T, toolZettelThemes as _, toolMemoryWakeup as a, toolSessionRoute as b, toolKgInvalidate as c, toolZettelConverse as d, toolZettelExplore as f, toolZettelSurprise as g, toolZettelSuggest as h, toolMemoryTaxonomy as i, lookupProjectId as j, detectProjectFromPath as k, toolKgQuery as l, toolZettelHealth as m, toolMemoryFeedback as n, toolKgAdd as o, toolZettelGodNotes as p, toolMemoryTunnels as r, toolKgContradictions as s, toolMemoryKgSearch as t, toolZettelCommunities as u, toolRegistrySearch as v, toolProjectList as w, toolProjectDetect as x, toolSessionList as y };
-//# sourceMappingURL=tools-y2bJpKom.mjs.map
+//# sourceMappingURL=tools-DGcB3o_S.mjs.map