@tekmidian/pai 0.25.2 → 0.27.0

package/dist/sqlite--BBAyXLH.mjs

@@ -0,0 +1,271 @@
+import "./embeddings-Bn86ssxR.mjs";
+import { a as searchMemorySemantic, r as searchMemory } from "./search-CpTv1I24.mjs";
+
+//#region src/storage/sqlite.ts
+var SQLiteBackend = class {
+	backendType = "sqlite";
+	db;
+	constructor(db) {
+		this.db = db;
+	}
+	/**
+	* Expose the raw better-sqlite3 Database handle.
+	* Used by the daemon to pass to indexAll() which still uses the synchronous API directly.
+	*/
+	getRawDb() {
+		return this.db;
+	}
+	/**
+	* Alias for getRawDb() — used by the dispatcher for operations that require
+	* direct SQLite access (e.g. memory_feedback, touchChunksLastAccessed).
+	*/
+	getSqliteDb() {
+		return this.db;
+	}
+	async close() {
+		try {
+			this.db.close();
+		} catch {}
+	}
+	async getStats() {
+		return {
+			files: this.db.prepare("SELECT COUNT(*) AS n FROM memory_files").get().n,
+			chunks: this.db.prepare("SELECT COUNT(*) AS n FROM memory_chunks").get().n
+		};
+	}
+	async getFileHash(projectId, path) {
+		return this.db.prepare("SELECT hash FROM memory_files WHERE project_id = ? AND path = ?").get(projectId, path)?.hash;
+	}
+	async upsertFile(file) {
+		this.db.prepare(`INSERT INTO memory_files (project_id, path, source, tier, hash, mtime, size)
+         VALUES (?, ?, ?, ?, ?, ?, ?)
+         ON CONFLICT(project_id, path) DO UPDATE SET
+           source = excluded.source,
+           tier   = excluded.tier,
+           hash   = excluded.hash,
+           mtime  = excluded.mtime,
+           size   = excluded.size`).run(file.projectId, file.path, file.source, file.tier, file.hash, file.mtime, file.size);
+	}
+	async getChunkIds(projectId, path) {
+		return this.db.prepare("SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?").all(projectId, path).map((r) => r.id);
+	}
+	async deleteChunksForFile(projectId, path) {
+		const ids = await this.getChunkIds(projectId, path);
+		const deleteFts = this.db.prepare("DELETE FROM memory_fts WHERE id = ?");
+		const deleteChunks = this.db.prepare("DELETE FROM memory_chunks WHERE project_id = ? AND path = ?");
+		this.db.transaction(() => {
+			for (const id of ids) deleteFts.run(id);
+			deleteChunks.run(projectId, path);
+		})();
+	}
+	async insertChunks(chunks) {
+		if (chunks.length === 0) return;
+		const insertChunk = this.db.prepare(`INSERT INTO memory_chunks (id, project_id, source, tier, path, start_line, end_line, hash, text, updated_at)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
+		const insertFts = this.db.prepare(`INSERT INTO memory_fts (text, id, project_id, path, source, tier, start_line, end_line)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?)`);
+		this.db.transaction(() => {
+			for (const c of chunks) {
+				insertChunk.run(c.id, c.projectId, c.source, c.tier, c.path, c.startLine, c.endLine, c.hash, c.text, c.updatedAt);
+				insertFts.run(c.text, c.id, c.projectId, c.path, c.source, c.tier, c.startLine, c.endLine);
+			}
+		})();
+	}
+	async getDistinctChunkPaths(projectId) {
+		return this.db.prepare("SELECT DISTINCT path FROM memory_chunks WHERE project_id = ?").all(projectId).map((r) => r.path);
+	}
+	async deletePaths(projectId, paths) {
+		if (paths.length === 0) return;
+		const deleteFts = this.db.prepare("DELETE FROM memory_fts WHERE id = ?");
+		const deleteChunks = this.db.prepare("DELETE FROM memory_chunks WHERE project_id = ? AND path = ?");
+		const deleteFile = this.db.prepare("DELETE FROM memory_files WHERE project_id = ? AND path = ?");
+		this.db.transaction(() => {
+			for (const path of paths) {
+				const ids = this.db.prepare("SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?").all(projectId, path);
+				for (const { id } of ids) deleteFts.run(id);
+				deleteChunks.run(projectId, path);
+				deleteFile.run(projectId, path);
+			}
+		})();
+	}
+	async getUnembeddedChunkIds(projectId, limit) {
+		const conditions = ["embedding IS NULL"];
+		const params = [];
+		if (projectId !== void 0) {
+			conditions.push("project_id = ?");
+			params.push(projectId);
+		}
+		const where = "WHERE " + conditions.join(" AND ");
+		return this.db.prepare(`SELECT id, text, project_id, path FROM memory_chunks ${where}
+        ORDER BY CASE
+          WHEN path LIKE '🧠 Ideaverse/%' THEN 0
+          WHEN path LIKE 'Z - Zettelkasten/%' THEN 0
+          WHEN path LIKE '💼 Business/%' THEN 0
+          WHEN path LIKE '📆 Meetings/%' THEN 1
+          WHEN path LIKE '💡 Insights/%' THEN 1
+          WHEN path LIKE '👨‍💻 People/%' THEN 1
+          WHEN path LIKE 'University/%' THEN 1
+          WHEN path LIKE 'Copilot/%' THEN 1
+          WHEN path LIKE '🗓️ Daily Notes/%' THEN 2
+          WHEN path LIKE 'PAI/%' THEN 3
+          WHEN path LIKE '09-job-search/%' THEN 4
+          WHEN path LIKE 'seriousletter/%' THEN 4
+          WHEN path LIKE 'Attachments/%' THEN 5
+          ELSE 2
+        END, id${limit !== void 0 ? " LIMIT ?" : ""}`).all(...params, ...limit !== void 0 ? [limit] : []);
+	}
+	async updateEmbedding(chunkId, embedding) {
+		this.db.prepare("UPDATE memory_chunks SET embedding = ? WHERE id = ?").run(embedding, chunkId);
+	}
+	async searchKeyword(query, opts) {
+		return searchMemory(this.db, query, opts);
+	}
+	async searchSemantic(queryEmbedding, opts) {
+		return searchMemorySemantic(this.db, queryEmbedding, opts);
+	}
+	vaultNotSupported() {
+		throw new Error("Vault operations require the Postgres backend");
+	}
+	async upsertVaultFile() {
+		this.vaultNotSupported();
+	}
+	async deleteVaultFile() {
+		this.vaultNotSupported();
+	}
+	async getVaultFile() {
+		this.vaultNotSupported();
+	}
+	async getVaultFileByInode() {
+		this.vaultNotSupported();
+	}
+	async getAllVaultFiles() {
+		this.vaultNotSupported();
+	}
+	async getRecentVaultFiles() {
+		this.vaultNotSupported();
+	}
+	async countVaultFiles() {
+		this.vaultNotSupported();
+	}
+	async upsertVaultAliases() {
+		this.vaultNotSupported();
+	}
+	async deleteVaultAliases() {
+		this.vaultNotSupported();
+	}
+	async replaceLinksForSources() {
+		this.vaultNotSupported();
+	}
+	async getLinksFromSource() {
+		this.vaultNotSupported();
+	}
+	async getLinksToTarget() {
+		this.vaultNotSupported();
+	}
+	async getVaultLinkGraph() {
+		this.vaultNotSupported();
+	}
+	async upsertVaultHealth() {
+		this.vaultNotSupported();
+	}
+	async getVaultHealth() {
+		this.vaultNotSupported();
+	}
+	async getOrphans() {
+		this.vaultNotSupported();
+	}
+	async getDeadLinks() {
+		this.vaultNotSupported();
+	}
+	async upsertNameIndex() {
+		this.vaultNotSupported();
+	}
+	async replaceNameIndex() {
+		this.vaultNotSupported();
+	}
+	async resolveVaultName() {
+		this.vaultNotSupported();
+	}
+	async searchVaultNameIndex() {
+		this.vaultNotSupported();
+	}
+	async getVaultFilesByPaths() {
+		this.vaultNotSupported();
+	}
+	async getVaultFilesByPathsAfter() {
+		this.vaultNotSupported();
+	}
+	async getVaultLinksFromPaths() {
+		this.vaultNotSupported();
+	}
+	async getChunksWithEmbeddings() {
+		this.vaultNotSupported();
+	}
+	async getChunksForPath() {
+		this.vaultNotSupported();
+	}
+	async searchChunksByText() {
+		this.vaultNotSupported();
+	}
+	async countVaultFilesWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async countVaultFilesAfter() {
+		this.vaultNotSupported();
+	}
+	async countVaultLinksWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async countVaultLinksAfter() {
+		this.vaultNotSupported();
+	}
+	async getDeadLinksWithLineNumbers() {
+		this.vaultNotSupported();
+	}
+	async getDeadLinksWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async getDeadLinksAfter() {
+		this.vaultNotSupported();
+	}
+	async getOrphansWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async getOrphansAfter() {
+		this.vaultNotSupported();
+	}
+	async getLowConnectivity() {
+		this.vaultNotSupported();
+	}
+	async getLowConnectivityWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async getLowConnectivityAfter() {
+		this.vaultNotSupported();
+	}
+	async getAllVaultFilePaths() {
+		this.vaultNotSupported();
+	}
+	async getVaultFilePathsWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async getVaultFilePathsAfter() {
+		this.vaultNotSupported();
+	}
+	async getVaultLinkEdges() {
+		this.vaultNotSupported();
+	}
+	async getVaultLinkEdgesWithPrefix() {
+		this.vaultNotSupported();
+	}
+	async getVaultLinkEdgesAfter() {
+		this.vaultNotSupported();
+	}
+	async getVaultAlias() {
+		this.vaultNotSupported();
+	}
+};
+
+//#endregion
+export { SQLiteBackend };
+//# sourceMappingURL=sqlite--BBAyXLH.mjs.map

package/dist/sqlite--BBAyXLH.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"sqlite--BBAyXLH.mjs","names":[],"sources":["../src/storage/sqlite.ts"],"sourcesContent":["/**\n * SQLiteBackend — wraps the existing better-sqlite3 federation.db\n * behind the StorageBackend interface.\n *\n * This is a thin adapter.  The heavy lifting is all in the existing\n * memory/indexer.ts and memory/search.ts code; we just provide a\n * backend-agnostic surface so the daemon and tools can call either\n * SQLite or Postgres transparently.\n */\n\nimport type { Database } from \"better-sqlite3\";\nimport type { StorageBackend, ChunkRow, FileRow, FederationStats } from \"./interface.js\";\nimport type { SearchResult, SearchOptions } from \"../memory/search.js\";\nimport { searchMemory, searchMemorySemantic } from \"../memory/search.js\";\n\nexport class SQLiteBackend implements StorageBackend {\n  readonly backendType = \"sqlite\" as const;\n\n  private db: Database;\n\n  constructor(db: Database) {\n    this.db = db;\n  }\n\n  /**\n   * Expose the raw better-sqlite3 Database handle.\n   * Used by the daemon to pass to indexAll() which still uses the synchronous API directly.\n   */\n  getRawDb(): Database {\n    return this.db;\n  }\n\n  /**\n   * Alias for getRawDb() — used by the dispatcher for operations that require\n   * direct SQLite access (e.g. memory_feedback, touchChunksLastAccessed).\n   */\n  getSqliteDb(): Database {\n    return this.db;\n  }\n\n  // -------------------------------------------------------------------------\n  // Lifecycle\n  // -------------------------------------------------------------------------\n\n  async close(): Promise<void> {\n    try {\n      this.db.close();\n    } catch {\n      // ignore\n    }\n  }\n\n  async getStats(): Promise<FederationStats> {\n    const files = (\n      this.db.prepare(\"SELECT COUNT(*) AS n FROM memory_files\").get() as { n: number }\n    ).n;\n    const chunks = (\n      this.db.prepare(\"SELECT COUNT(*) AS n FROM memory_chunks\").get() as { n: number }\n    ).n;\n    return { files, chunks };\n  }\n\n  // -------------------------------------------------------------------------\n  // File tracking\n  // -------------------------------------------------------------------------\n\n  async getFileHash(projectId: number, path: string): Promise<string | undefined> {\n    const row = this.db\n      .prepare(\"SELECT hash FROM memory_files WHERE project_id = ? AND path = ?\")\n      .get(projectId, path) as { hash: string } | undefined;\n    return row?.hash;\n  }\n\n  async upsertFile(file: FileRow): Promise<void> {\n    this.db\n      .prepare(\n        `INSERT INTO memory_files (project_id, path, source, tier, hash, mtime, size)\n         VALUES (?, ?, ?, ?, ?, ?, ?)\n         ON CONFLICT(project_id, path) DO UPDATE SET\n           source = excluded.source,\n           tier   = excluded.tier,\n           hash   = excluded.hash,\n           mtime  = excluded.mtime,\n           size   = excluded.size`\n      )\n      .run(file.projectId, file.path, file.source, file.tier, file.hash, file.mtime, file.size);\n  }\n\n  // -------------------------------------------------------------------------\n  // Chunk management\n  // -------------------------------------------------------------------------\n\n  async getChunkIds(projectId: number, path: string): Promise<string[]> {\n    const rows = this.db\n      .prepare(\"SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?\")\n      .all(projectId, path) as Array<{ id: string }>;\n    return rows.map((r) => r.id);\n  }\n\n  async deleteChunksForFile(projectId: number, path: string): Promise<void> {\n    const ids = await this.getChunkIds(projectId, path);\n    const deleteFts = this.db.prepare(\"DELETE FROM memory_fts WHERE id = ?\");\n    const deleteChunks = this.db.prepare(\n      \"DELETE FROM memory_chunks WHERE project_id = ? AND path = ?\"\n    );\n    this.db.transaction(() => {\n      for (const id of ids) {\n        deleteFts.run(id);\n      }\n      deleteChunks.run(projectId, path);\n    })();\n  }\n\n  async insertChunks(chunks: ChunkRow[]): Promise<void> {\n    if (chunks.length === 0) return;\n\n    const insertChunk = this.db.prepare(\n      `INSERT INTO memory_chunks (id, project_id, source, tier, path, start_line, end_line, hash, text, updated_at)\n       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`\n    );\n    const insertFts = this.db.prepare(\n      `INSERT INTO memory_fts (text, id, project_id, path, source, tier, start_line, end_line)\n       VALUES (?, ?, ?, ?, ?, ?, ?, ?)`\n    );\n\n    this.db.transaction(() => {\n      for (const c of chunks) {\n        insertChunk.run(\n          c.id,\n          c.projectId,\n          c.source,\n          c.tier,\n          c.path,\n          c.startLine,\n          c.endLine,\n          c.hash,\n          c.text,\n          c.updatedAt\n        );\n        insertFts.run(\n          c.text,\n          c.id,\n          c.projectId,\n          c.path,\n          c.source,\n          c.tier,\n          c.startLine,\n          c.endLine\n        );\n      }\n    })();\n  }\n\n  async getDistinctChunkPaths(projectId: number): Promise<string[]> {\n    const rows = this.db\n      .prepare(\"SELECT DISTINCT path FROM memory_chunks WHERE project_id = ?\")\n      .all(projectId) as Array<{ path: string }>;\n    return rows.map((r) => r.path);\n  }\n\n  async deletePaths(projectId: number, paths: string[]): Promise<void> {\n    if (paths.length === 0) return;\n    const deleteFts = this.db.prepare(\"DELETE FROM memory_fts WHERE id = ?\");\n    const deleteChunks = this.db.prepare(\n      \"DELETE FROM memory_chunks WHERE project_id = ? AND path = ?\"\n    );\n    const deleteFile = this.db.prepare(\n      \"DELETE FROM memory_files WHERE project_id = ? AND path = ?\"\n    );\n    this.db.transaction(() => {\n      for (const path of paths) {\n        const ids = this.db\n          .prepare(\"SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?\")\n          .all(projectId, path) as Array<{ id: string }>;\n        for (const { id } of ids) {\n          deleteFts.run(id);\n        }\n        deleteChunks.run(projectId, path);\n        deleteFile.run(projectId, path);\n      }\n    })();\n  }\n\n  async getUnembeddedChunkIds(projectId?: number, limit?: number): Promise<Array<{ id: string; text: string; project_id: number; path: string }>> {\n    const conditions = [\"embedding IS NULL\"];\n    const params: (string | number)[] = [];\n\n    if (projectId !== undefined) {\n      conditions.push(\"project_id = ?\");\n      params.push(projectId);\n    }\n\n    const where = \"WHERE \" + conditions.join(\" AND \");\n    // Prioritize real knowledge notes over PAI session/job-search noise.\n    // CASE expression assigns lower priority numbers to knowledge paths.\n    const rows = this.db\n      .prepare(`SELECT id, text, project_id, path FROM memory_chunks ${where}\n        ORDER BY CASE\n          WHEN path LIKE '🧠 Ideaverse/%' THEN 0\n          WHEN path LIKE 'Z - Zettelkasten/%' THEN 0\n          WHEN path LIKE '💼 Business/%' THEN 0\n          WHEN path LIKE '📆 Meetings/%' THEN 1\n          WHEN path LIKE '💡 Insights/%' THEN 1\n          WHEN path LIKE '👨‍💻 People/%' THEN 1\n          WHEN path LIKE 'University/%' THEN 1\n          WHEN path LIKE 'Copilot/%' THEN 1\n          WHEN path LIKE '🗓️ Daily Notes/%' THEN 2\n          WHEN path LIKE 'PAI/%' THEN 3\n          WHEN path LIKE '09-job-search/%' THEN 4\n          WHEN path LIKE 'seriousletter/%' THEN 4\n          WHEN path LIKE 'Attachments/%' THEN 5\n          ELSE 2\n        END, id${limit !== undefined ? \" LIMIT ?\" : \"\"}`)\n      .all(...params, ...(limit !== undefined ? [limit] : [])) as Array<{ id: string; text: string; project_id: number; path: string }>;\n    return rows;\n  }\n\n  async updateEmbedding(chunkId: string, embedding: Buffer): Promise<void> {\n    this.db\n      .prepare(\"UPDATE memory_chunks SET embedding = ? WHERE id = ?\")\n      .run(embedding, chunkId);\n  }\n\n  // -------------------------------------------------------------------------\n  // Search\n  // -------------------------------------------------------------------------\n\n  async searchKeyword(query: string, opts?: SearchOptions): Promise<SearchResult[]> {\n    return searchMemory(this.db, query, opts);\n  }\n\n  async searchSemantic(queryEmbedding: Float32Array, opts?: SearchOptions): Promise<SearchResult[]> {\n    return searchMemorySemantic(this.db, queryEmbedding, opts);\n  }\n\n  // -------------------------------------------------------------------------\n  // Vault operations — not supported on SQLite backend (use Postgres)\n  // -------------------------------------------------------------------------\n\n  private vaultNotSupported(): never {\n    throw new Error(\"Vault operations require the Postgres backend\");\n  }\n\n  async upsertVaultFile(): Promise<void> { this.vaultNotSupported(); }\n  async deleteVaultFile(): Promise<void> { this.vaultNotSupported(); }\n  async getVaultFile(): Promise<null> { this.vaultNotSupported(); }\n  async getVaultFileByInode(): Promise<null> { this.vaultNotSupported(); }\n  async getAllVaultFiles(): Promise<never[]> { this.vaultNotSupported(); }\n  async getRecentVaultFiles(): Promise<never[]> { this.vaultNotSupported(); }\n  async countVaultFiles(): Promise<number> { this.vaultNotSupported(); }\n  async upsertVaultAliases(): Promise<void> { this.vaultNotSupported(); }\n  async deleteVaultAliases(): Promise<void> { this.vaultNotSupported(); }\n  async replaceLinksForSources(): Promise<void> { this.vaultNotSupported(); }\n  async getLinksFromSource(): Promise<never[]> { this.vaultNotSupported(); }\n  async getLinksToTarget(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultLinkGraph(): Promise<never[]> { this.vaultNotSupported(); }\n  async upsertVaultHealth(): Promise<void> { this.vaultNotSupported(); }\n  async getVaultHealth(): Promise<null> { this.vaultNotSupported(); }\n  async getOrphans(): Promise<never[]> { this.vaultNotSupported(); }\n  async getDeadLinks(): Promise<never[]> { this.vaultNotSupported(); }\n  async upsertNameIndex(): Promise<void> { this.vaultNotSupported(); }\n  async replaceNameIndex(): Promise<void> { this.vaultNotSupported(); }\n  async resolveVaultName(): Promise<never[]> { this.vaultNotSupported(); }\n  async searchVaultNameIndex(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultFilesByPaths(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultFilesByPathsAfter(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultLinksFromPaths(): Promise<never[]> { this.vaultNotSupported(); }\n  async getChunksWithEmbeddings(): Promise<never[]> { this.vaultNotSupported(); }\n  async getChunksForPath(): Promise<never[]> { this.vaultNotSupported(); }\n  async searchChunksByText(): Promise<never[]> { this.vaultNotSupported(); }\n  async countVaultFilesWithPrefix(): Promise<number> { this.vaultNotSupported(); }\n  async countVaultFilesAfter(): Promise<number> { this.vaultNotSupported(); }\n  async countVaultLinksWithPrefix(): Promise<number> { this.vaultNotSupported(); }\n  async countVaultLinksAfter(): Promise<number> { this.vaultNotSupported(); }\n  async getDeadLinksWithLineNumbers(): Promise<never[]> { this.vaultNotSupported(); }\n  async getDeadLinksWithPrefix(): Promise<never[]> { this.vaultNotSupported(); }\n  async getDeadLinksAfter(): Promise<never[]> { this.vaultNotSupported(); }\n  async getOrphansWithPrefix(): Promise<never[]> { this.vaultNotSupported(); }\n  async getOrphansAfter(): Promise<never[]> { this.vaultNotSupported(); }\n  async getLowConnectivity(): Promise<never[]> { this.vaultNotSupported(); }\n  async getLowConnectivityWithPrefix(): Promise<never[]> { this.vaultNotSupported(); }\n  async getLowConnectivityAfter(): Promise<never[]> { this.vaultNotSupported(); }\n  async getAllVaultFilePaths(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultFilePathsWithPrefix(): Promise<never[]> { this.vaultNotSupported(); }\n  async getVaultFilePathsAfter(): Promise<never[]> { this.vaultNotSupported(); 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package/dist/themes-DICajLf-.mjs

@@ -0,0 +1,148 @@
+import { n as cosineSimilarity, r as deserializeEmbedding } from "./embeddings-Bn86ssxR.mjs";
+import { t as STOP_WORDS } from "./stop-words-BaMEGVeY.mjs";
+
+//#region src/zettelkasten/themes.ts
+const MAX_CHUNKS = 5e3;
+function getTopFolder(vaultPath) {
+	const parts = vaultPath.split("/");
+	return parts.length > 1 ? parts[0] : "";
+}
+function generateLabel(titles) {
+	const wordCounts = /* @__PURE__ */ new Map();
+	for (const title of titles) {
+		if (!title) continue;
+		const words = title.toLowerCase().replace(/[^a-z0-9\s]/g, " ").split(/\s+/).filter((w) => w.length > 2 && !STOP_WORDS.has(w));
+		for (const word of words) wordCounts.set(word, (wordCounts.get(word) ?? 0) + 1);
+	}
+	return [...wordCounts.entries()].sort((a, b) => b[1] - a[1]).slice(0, 3).map(([w]) => w).join(" / ");
+}
+async function computeLinkedRatio(backend, paths) {
+	if (paths.length < 2) return 0;
+	const totalPairs = paths.length * (paths.length - 1) / 2;
+	const pathSet = new Set(paths);
+	let linkedPairs = 0;
+	for (const path of paths) {
+		const links = await backend.getLinksFromSource(path);
+		for (const link of links) if (link.targetPath && pathSet.has(link.targetPath)) linkedPairs++;
+	}
+	const uniquePairs = linkedPairs / 2;
+	return Math.min(1, uniquePairs / totalPairs);
+}
+function averageEmbeddings(embeddings) {
+	if (embeddings.length === 0) return new Float32Array(0);
+	const dim = embeddings[0].length;
+	const sum = new Float32Array(dim);
+	for (const vec of embeddings) for (let i = 0; i < dim; i++) sum[i] += vec[i];
+	const avg = new Float32Array(dim);
+	for (let i = 0; i < dim; i++) avg[i] = sum[i] / embeddings.length;
+	return avg;
+}
+/**
+* Detect emerging themes in recently-modified notes using agglomerative single-linkage
+* clustering of note-level embeddings.
+*/
+async function zettelThemes(backend, opts) {
+	const lookbackDays = opts.lookbackDays ?? 30;
+	const minClusterSize = opts.minClusterSize ?? 3;
+	const maxThemes = opts.maxThemes ?? 10;
+	const similarityThreshold = opts.similarityThreshold ?? .65;
+	const now = Date.now();
+	const from = now - lookbackDays * 864e5;
+	const recentNotes = (await backend.getRecentVaultFiles(from)).map((f) => ({
+		vault_path: f.vaultPath,
+		title: f.title,
+		indexed_at: f.indexedAt
+	}));
+	const chunkRows = await backend.getChunksWithEmbeddings(opts.vaultProjectId, MAX_CHUNKS);
+	const embeddingsByPath = /* @__PURE__ */ new Map();
+	for (const row of chunkRows) {
+		const vec = deserializeEmbedding(row.embedding);
+		const arr = embeddingsByPath.get(row.path);
+		if (!arr) embeddingsByPath.set(row.path, [vec]);
+		else arr.push(vec);
+	}
+	const fileEmbeddings = /* @__PURE__ */ new Map();
+	for (const [path, vecs] of embeddingsByPath) fileEmbeddings.set(path, averageEmbeddings(vecs));
+	const clusters = [];
+	for (const note of recentNotes) {
+		const embedding = fileEmbeddings.get(note.vault_path);
+		if (!embedding) continue;
+		clusters.push({
+			paths: [note.vault_path],
+			titles: [note.title],
+			indexedAts: [note.indexed_at],
+			centroid: embedding
+		});
+	}
+	const totalNotesAnalyzed = clusters.length;
+	let merged = true;
+	while (merged && clusters.length > 1) {
+		merged = false;
+		let bestSim = similarityThreshold;
+		let bestI = -1;
+		let bestJ = -1;
+		for (let i = 0; i < clusters.length; i++) for (let j = i + 1; j < clusters.length; j++) {
+			const sim = cosineSimilarity(clusters[i].centroid, clusters[j].centroid);
+			if (sim > bestSim) {
+				bestSim = sim;
+				bestI = i;
+				bestJ = j;
+			}
+		}
+		if (bestI === -1) break;
+		const ci = clusters[bestI];
+		const cj = clusters[bestJ];
+		const mergedPaths = [...ci.paths, ...cj.paths];
+		const mergedTitles = [...ci.titles, ...cj.titles];
+		const mergedIndexedAts = [...ci.indexedAts, ...cj.indexedAts];
+		const memberEmbeddings = [];
+		for (const p of mergedPaths) {
+			const emb = fileEmbeddings.get(p);
+			if (emb) memberEmbeddings.push(emb);
+		}
+		clusters[bestI] = {
+			paths: mergedPaths,
+			titles: mergedTitles,
+			indexedAts: mergedIndexedAts,
+			centroid: averageEmbeddings(memberEmbeddings)
+		};
+		clusters.splice(bestJ, 1);
+		merged = true;
+	}
+	const themes = [];
+	let clusterIndex = 0;
+	for (const cluster of clusters) {
+		if (cluster.paths.length < minClusterSize) continue;
+		const label = generateLabel(cluster.titles) || `Theme ${clusterIndex + 1}`;
+		const avgRecency = cluster.indexedAts.reduce((sum, t) => sum + t, 0) / cluster.indexedAts.length;
+		const folderDiversity = new Set(cluster.paths.map(getTopFolder)).size / cluster.paths.length;
+		const linkedRatio = await computeLinkedRatio(backend, cluster.paths);
+		const suggestIndexNote = linkedRatio < .3 && cluster.paths.length >= 5;
+		themes.push({
+			id: clusterIndex++,
+			label,
+			notes: cluster.paths.map((path, idx) => ({
+				path,
+				title: cluster.titles[idx]
+			})),
+			size: cluster.paths.length,
+			folderDiversity,
+			avgRecency,
+			linkedRatio,
+			suggestIndexNote
+		});
+	}
+	themes.sort((a, b) => b.size * b.folderDiversity * (b.avgRecency / now) - a.size * a.folderDiversity * (a.avgRecency / now));
+	return {
+		themes: themes.slice(0, maxThemes),
+		totalNotesAnalyzed,
+		timeWindow: {
+			from,
+			to: now
+		}
+	};
+}
+
+//#endregion
+export { zettelThemes as t };
+//# sourceMappingURL=themes-DICajLf-.mjs.map

package/dist/themes-DICajLf-.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"themes-DICajLf-.mjs","names":[],"sources":["../src/zettelkasten/themes.ts"],"sourcesContent":["import type { StorageBackend } from \"../storage/interface.js\";\nimport { deserializeEmbedding, cosineSimilarity } from \"../memory/embeddings.js\";\nimport { STOP_WORDS } from \"../utils/stop-words.js\";\n\nexport interface ThemeOptions {\n  vaultProjectId: number;\n  lookbackDays?: number;\n  minClusterSize?: number;\n  maxThemes?: number;\n  similarityThreshold?: number;\n}\n\nexport interface ThemeCluster {\n  id: number;\n  label: string;\n  notes: Array<{\n    path: string;\n    title: string | null;\n  }>;\n  size: number;\n  folderDiversity: number;\n  avgRecency: number;\n  linkedRatio: number;\n  suggestIndexNote: boolean;\n}\n\nexport interface ThemeResult {\n  themes: ThemeCluster[];\n  totalNotesAnalyzed: number;\n  timeWindow: { from: number; to: number };\n}\n\nconst MAX_CHUNKS = 5000;\n\n// STOP_WORDS imported from utils/stop-words.ts\n\nfunction getTopFolder(vaultPath: string): string {\n  const parts = vaultPath.split(\"/\");\n  return parts.length > 1 ? parts[0] : \"\";\n}\n\nfunction generateLabel(titles: Array<string | null>): string {\n  const wordCounts = new Map<string, number>();\n  for (const title of titles) {\n    if (!title) continue;\n    const words = title\n      .toLowerCase()\n      .replace(/[^a-z0-9\\s]/g, \" \")\n      .split(/\\s+/)\n      .filter((w) => w.length > 2 && !STOP_WORDS.has(w));\n    for (const word of words) {\n      wordCounts.set(word, (wordCounts.get(word) ?? 0) + 1);\n    }\n  }\n  const sorted = [...wordCounts.entries()].sort((a, b) => b[1] - a[1]);\n  return sorted\n    .slice(0, 3)\n    .map(([w]) => w)\n    .join(\" / \");\n}\n\nasync function computeLinkedRatio(backend: StorageBackend, paths: string[]): Promise<number> {\n  if (paths.length < 2) return 0;\n  const totalPairs = (paths.length * (paths.length - 1)) / 2;\n  const pathSet = new Set(paths);\n  let linkedPairs = 0;\n\n  for (const path of paths) {\n    const links = await backend.getLinksFromSource(path);\n    for (const link of links) {\n      if (link.targetPath && pathSet.has(link.targetPath)) {\n        linkedPairs++;\n      }\n    }\n  }\n\n  // Each bidirectional pair might be counted once per direction; divide by 2 to normalize\n  const uniquePairs = linkedPairs / 2;\n  return Math.min(1, uniquePairs / totalPairs);\n}\n\ntype ClusterNode = {\n  paths: string[];\n  titles: Array<string | null>;\n  indexedAts: number[];\n  centroid: Float32Array;\n};\n\nfunction averageEmbeddings(embeddings: Float32Array[]): Float32Array {\n  if (embeddings.length === 0) return new Float32Array(0);\n  const dim = embeddings[0].length;\n  const sum = new Float32Array(dim);\n  for (const vec of embeddings) {\n    for (let i = 0; i < dim; i++) {\n      sum[i] += vec[i];\n    }\n  }\n  const avg = new Float32Array(dim);\n  for (let i = 0; i < dim; i++) {\n    avg[i] = sum[i] / embeddings.length;\n  }\n  return avg;\n}\n\n/**\n * Detect emerging themes in recently-modified notes using agglomerative single-linkage\n * clustering of note-level embeddings.\n */\nexport async function zettelThemes(\n  backend: StorageBackend,\n  opts: ThemeOptions,\n): Promise<ThemeResult> {\n  const lookbackDays = opts.lookbackDays ?? 30;\n  const minClusterSize = opts.minClusterSize ?? 3;\n  const maxThemes = opts.maxThemes ?? 10;\n  const similarityThreshold = opts.similarityThreshold ?? 0.65;\n\n  const now = Date.now();\n  const from = now - lookbackDays * 86400000;\n\n  // Step 1: get recent notes\n  const recentFiles = await backend.getRecentVaultFiles(from);\n  const recentNotes = recentFiles.map(f => ({ vault_path: f.vaultPath, title: f.title, indexed_at: f.indexedAt }));\n\n  // Step 2: get file-level embeddings from memory_chunks\n  const chunkRows = await backend.getChunksWithEmbeddings(opts.vaultProjectId, MAX_CHUNKS);\n\n  const embeddingsByPath = new Map<string, Float32Array[]>();\n  for (const row of chunkRows) {\n    const vec = deserializeEmbedding(row.embedding);\n    const arr = embeddingsByPath.get(row.path);\n    if (!arr) {\n      embeddingsByPath.set(row.path, [vec]);\n    } else {\n      arr.push(vec);\n    }\n  }\n\n  const fileEmbeddings = new Map<string, Float32Array>();\n  for (const [path, vecs] of embeddingsByPath) {\n    fileEmbeddings.set(path, averageEmbeddings(vecs));\n  }\n\n  // Step 3: build initial clusters — only include notes that have embeddings\n  const clusters: ClusterNode[] = [];\n  for (const note of recentNotes) {\n    const embedding = fileEmbeddings.get(note.vault_path);\n    if (!embedding) continue;\n    clusters.push({\n      paths: [note.vault_path],\n      titles: [note.title],\n      indexedAts: [note.indexed_at],\n      centroid: embedding,\n    });\n  }\n\n  const totalNotesAnalyzed = clusters.length;\n\n  // Step 4: agglomerative single-linkage clustering\n  // Stop when no two clusters have similarity >= threshold\n  let merged = true;\n  while (merged && clusters.length > 1) {\n    merged = false;\n    let bestSim = similarityThreshold;\n    let bestI = -1;\n    let bestJ = -1;\n\n    for (let i = 0; i < clusters.length; i++) {\n      for (let j = i + 1; j < clusters.length; j++) {\n        const sim = cosineSimilarity(clusters[i].centroid, clusters[j].centroid);\n        if (sim > bestSim) {\n          bestSim = sim;\n          bestI = i;\n          bestJ = j;\n        }\n      }\n    }\n\n    if (bestI === -1) break;\n\n    // Merge cluster j into cluster i\n    const ci = clusters[bestI];\n    const cj = clusters[bestJ];\n    const mergedPaths = [...ci.paths, ...cj.paths];\n    const mergedTitles = [...ci.titles, ...cj.titles];\n    const mergedIndexedAts = [...ci.indexedAts, ...cj.indexedAts];\n\n    // Recompute centroid from averaged embeddings of all member paths\n    const memberEmbeddings: Float32Array[] = [];\n    for (const p of mergedPaths) {\n      const emb = fileEmbeddings.get(p);\n      if (emb) memberEmbeddings.push(emb);\n    }\n\n    clusters[bestI] = {\n      paths: mergedPaths,\n      titles: mergedTitles,\n      indexedAts: mergedIndexedAts,\n      centroid: averageEmbeddings(memberEmbeddings),\n    };\n\n    clusters.splice(bestJ, 1);\n    merged = true;\n  }\n\n  // Step 5: filter and annotate clusters\n  const themes: ThemeCluster[] = [];\n  let clusterIndex = 0;\n\n  for (const cluster of clusters) {\n    if (cluster.paths.length < minClusterSize) continue;\n\n    const label = generateLabel(cluster.titles) || `Theme ${clusterIndex + 1}`;\n    const avgRecency =\n      cluster.indexedAts.reduce((sum, t) => sum + t, 0) / cluster.indexedAts.length;\n\n    const uniqueFolders = new Set(cluster.paths.map(getTopFolder));\n    const folderDiversity = uniqueFolders.size / cluster.paths.length;\n\n    const linkedRatio = await computeLinkedRatio(backend, cluster.paths);\n    const suggestIndexNote = linkedRatio < 0.3 && cluster.paths.length >= 5;\n\n    themes.push({\n      id: clusterIndex++,\n      label,\n      notes: cluster.paths.map((path, idx) => ({\n        path,\n        title: cluster.titles[idx],\n      })),\n      size: cluster.paths.length,\n      folderDiversity,\n      avgRecency,\n      linkedRatio,\n      suggestIndexNote,\n    });\n  }\n\n  // Step 6: rank by size * folderDiversity * recency_ratio\n  themes.sort(\n    (a, b) =>\n      b.size * b.folderDiversity * (b.avgRecency / now) -\n      a.size * a.folderDiversity * (a.avgRecency / now),\n  );\n\n  return {\n    themes: themes.slice(0, maxThemes),\n    totalNotesAnalyzed,\n    timeWindow: { from, to: now },\n  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