@tekmidian/pai 0.18.0 → 0.18.1

package/dist/checkpoint-block-CkvwYA5y.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"checkpoint-block-CkvwYA5y.mjs","names":[],"sources":["../src/cli/commands/registry/utils.ts","../src/cli/commands/registry/scan.ts","../src/daemon/templates/triple-extraction-prompt.ts","../src/memory/kg-extraction.ts","../src/session/checkpoint-block.ts"],"sourcesContent":["/** Shared database helpers for registry command operations. */\n\nimport type { Database } from \"better-sqlite3\";\nimport { now } from \"../../utils.js\";\nimport { basename } from \"node:path\";\n\n/**\n * Upsert a project row. Returns { id, isNew }.\n *\n * Matching priority:\n *  1. root_path  — most reliable; handles slug collisions\n *  2. encoded_dir — Claude project dirs are canonical\n *  3. Insert with suffix-deduplication on slug collision\n *\n * display_name is set to basename(rootPath) on INSERT so that the unified\n * listing always shows a human-readable name rather than the kebab-case slug.\n */\nexport function upsertProject(\n  db: Database,\n  slug: string,\n  rootPath: string,\n  encodedDir: string\n): { id: number; isNew: boolean } {\n  const ts = now();\n\n  const byPath = db\n    .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n    .get(rootPath) as { id: number } | undefined;\n\n  if (byPath) {\n    const encodedOwner = db\n      .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n      .get(encodedDir) as { id: number } | undefined;\n\n    if (!encodedOwner || encodedOwner.id === byPath.id) {\n      db.prepare(\n        \"UPDATE projects SET encoded_dir = ?, updated_at = ? WHERE id = ?\"\n      ).run(encodedDir, ts, byPath.id);\n    }\n    return { id: byPath.id, isNew: false };\n  }\n\n  const byEncoded = db\n    .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n    .get(encodedDir) as { id: number } | undefined;\n\n  if (byEncoded) {\n    const pathOwner = db\n      .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n      .get(rootPath) as { id: number } | undefined;\n\n    if (!pathOwner || pathOwner.id === byEncoded.id) {\n      db.prepare(\n        \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n      ).run(rootPath, ts, byEncoded.id);\n    }\n    return { id: byEncoded.id, isNew: false };\n  }\n\n  // Insert — deduplicate slug with numeric suffix if needed.\n  let finalSlug = slug;\n  let attempt = 0;\n  while (true) {\n    const conflict = db\n      .prepare(\"SELECT id FROM projects WHERE slug = ?\")\n      .get(finalSlug) as { id: number } | undefined;\n    if (!conflict) break;\n    attempt++;\n    finalSlug = `${slug}-${attempt}`;\n  }\n\n  // Use basename(rootPath) as the human display name. If rootPath is empty or\n  // just \"/\" fall back to the slug so we always have something non-empty.\n  const displayName = basename(rootPath) || finalSlug;\n\n  const result = db\n    .prepare(\n      `INSERT OR IGNORE INTO projects\n         (slug, display_name, root_path, encoded_dir, type, status, created_at, updated_at)\n       VALUES (?, ?, ?, ?, 'local', 'active', ?, ?)`\n    )\n    .run(finalSlug, displayName, rootPath, encodedDir, ts, ts);\n\n  if (result.changes === 0) {\n    const fallback =\n      (db.prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\").get(encodedDir) as { id: number } | undefined) ??\n      (db.prepare(\"SELECT id FROM projects WHERE root_path = ?\").get(rootPath) as { id: number } | undefined);\n\n    if (fallback) {\n      return { id: fallback.id, isNew: false };\n    }\n\n    throw new Error(\n      `upsertProject: INSERT OR IGNORE was suppressed but no matching row found ` +\n      `for root_path=${rootPath} encoded_dir=${encodedDir}`\n    );\n  }\n\n  return { id: result.lastInsertRowid as number, isNew: true };\n}\n\n/** Upsert a session note. Returns true if newly inserted. */\nexport function upsertSession(\n  db: Database,\n  projectId: number,\n  number: number,\n  date: string,\n  slug: string,\n  title: string,\n  filename: string\n): boolean {\n  const existing = db\n    .prepare(\"SELECT id FROM sessions WHERE project_id = ? AND number = ?\")\n    .get(projectId, number);\n\n  if (existing) return false;\n\n  const ts = now();\n  db.prepare(\n    `INSERT INTO sessions\n       (project_id, number, date, slug, title, filename, status, created_at)\n     VALUES (?, ?, ?, ?, ?, ?, 'completed', ?)`\n  ).run(projectId, number, date, slug, title, filename, ts);\n\n  return true;\n}\n","/** Registry scan command: walk ~/.claude/projects/ and populate the registry. */\n\nimport { existsSync, readdirSync, statSync, readFileSync, writeFileSync, mkdirSync } from \"node:fs\";\nimport { realpathSync } from \"node:fs\";\nimport { join, basename, resolve } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport { ok, warn, err, dim, bold } from \"../../utils.js\";\nimport { encodeDir } from \"../../utils.js\";\nimport { decodeEncodedDir, slugify, parseSessionFilename, buildEncodedDirMap } from \"../../../registry/migrate.js\";\nimport { ensurePaiMarker, discoverPaiMarkers } from \"../../../registry/pai-marker.js\";\nimport { upsertProject, upsertSession } from \"./utils.js\";\nimport type { Database } from \"better-sqlite3\";\n\n// ---------------------------------------------------------------------------\n// clc session.json fallback map\n// ---------------------------------------------------------------------------\n\n/**\n * Build a reverse map from encoded-dir → real path using the clc session\n * registry (~/.claude/session.json).\n *\n * The clc registry stores { sessions: [{ directory, ... }, ...] }. For each\n * entry with a resolvable directory, we encode the realpath and add it to\n * the map. This lets the scanner recover project paths that are not in\n * Claude's session-registry.json but were registered by clc.\n */\nfunction buildClcDirMap(): Map<string, string> {\n  const map = new Map<string, string>();\n  const sessionFile = join(homedir(), \".claude\", \"session.json\");\n  if (!existsSync(sessionFile)) return map;\n\n  try {\n    const raw = readFileSync(sessionFile, \"utf8\");\n    const parsed = JSON.parse(raw) as { sessions?: Array<{ directory?: string }> };\n    for (const entry of parsed.sessions ?? []) {\n      const dir = entry.directory;\n      if (!dir) continue;\n      try {\n        const real = realpathSync(dir);\n        if (!existsSync(real)) continue;\n        const encoded = encodeDir(real);\n        map.set(encoded, real);\n      } catch {\n        // Unresolvable path — skip\n      }\n    }\n  } catch {\n    // Unparseable — return empty map\n  }\n  return map;\n}\n\n// ---------------------------------------------------------------------------\n// Config helpers\n// ---------------------------------------------------------------------------\n\nconst CLAUDE_PROJECTS_DIR = join(homedir(), \".claude\", \"projects\");\nconst PAI_CONFIG_DIR = join(homedir(), \".pai\");\nconst PAI_CONFIG_FILE = join(PAI_CONFIG_DIR, \"config.json\");\n\ninterface PaiConfig {\n  scan_dirs: string[];\n}\n\nexport function loadScanConfig(): PaiConfig {\n  if (!existsSync(PAI_CONFIG_FILE)) return { scan_dirs: [] };\n  try {\n    return JSON.parse(readFileSync(PAI_CONFIG_FILE, \"utf8\")) as PaiConfig;\n  } catch {\n    return { scan_dirs: [] };\n  }\n}\n\nexport function saveScanConfig(config: PaiConfig): void {\n  mkdirSync(PAI_CONFIG_DIR, { recursive: true });\n  writeFileSync(PAI_CONFIG_FILE, JSON.stringify(config, null, 2) + \"\\n\", \"utf8\");\n}\n\n/**\n * Resolve a path to its canonical form, falling back to the input.\n *\n * Every path that becomes a `projects.root_path` must go through this. That\n * column is UNIQUE, so two spellings of one directory create two projects and\n * split session history between them. The spellings are not hypothetical: a\n * configured scan_dir of `~/dev/ai` (where `~/dev` is a symlink) makes every\n * project under it register under the symlinked path, while a session started\n * from the resolved path registers a rival row.\n */\nexport function canonicalPath(p: string): string {\n  try {\n    return realpathSync(p);\n  } catch {\n    return p;\n  }\n}\n\nexport function resolveHome(p: string): string {\n  if (p.startsWith(\"~/\")) return join(homedir(), p.slice(2));\n  return resolve(p);\n}\n\n// ---------------------------------------------------------------------------\n// File discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Recursively find all .md files in a directory, including YYYY/MM subdirectories.\n * Returns filenames (basename only).\n */\nexport function findNoteFiles(dir: string): string[] {\n  const results: string[] = [];\n  if (!existsSync(dir)) return results;\n\n  for (const entry of readdirSync(dir, { withFileTypes: true })) {\n    if (entry.isFile() && entry.name.endsWith(\".md\")) {\n      results.push(entry.name);\n    } else if (entry.isDirectory() && /^\\d{4}$/.test(entry.name)) {\n      const yearDir = join(dir, entry.name);\n      for (const monthEntry of readdirSync(yearDir, { withFileTypes: true })) {\n        if (monthEntry.isDirectory() && /^\\d{2}$/.test(monthEntry.name)) {\n          const monthDir = join(yearDir, monthEntry.name);\n          for (const noteEntry of readdirSync(monthDir, { withFileTypes: true })) {\n            if (noteEntry.isFile() && noteEntry.name.endsWith(\".md\")) {\n              results.push(noteEntry.name);\n            }\n          }\n        }\n      }\n    }\n  }\n  return results;\n}\n\n// ---------------------------------------------------------------------------\n// Scan result type\n// ---------------------------------------------------------------------------\n\nexport interface ScanResult {\n  projectsScanned: number;\n  projectsNew: number;\n  projectsUpdated: number;\n  sessionsScanned: number;\n  sessionsNew: number;\n  skipped: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Core scan logic\n// ---------------------------------------------------------------------------\n\nexport function performScan(db: Database): ScanResult {\n  const result: ScanResult = {\n    projectsScanned: 0,\n    projectsNew: 0,\n    projectsUpdated: 0,\n    sessionsScanned: 0,\n    sessionsNew: 0,\n    skipped: [],\n  };\n\n  if (!existsSync(CLAUDE_PROJECTS_DIR)) {\n    throw new Error(`Claude projects directory not found: ${CLAUDE_PROJECTS_DIR}`);\n  }\n\n  const entries = readdirSync(CLAUDE_PROJECTS_DIR).filter((name) => {\n    const full = join(CLAUDE_PROJECTS_DIR, name);\n    return statSync(full).isDirectory();\n  });\n\n  const lookupMap = buildEncodedDirMap();\n  const clcMap = buildClcDirMap();\n\n  for (const encodedDir of entries) {\n    let rootPath = decodeEncodedDir(encodedDir, lookupMap);\n\n    // If the decoded path doesn't exist, try the clc session.json fallback map.\n    // The clc map is keyed by encodeDir(realpathSync(directory)), so paths that\n    // were registered by clc but not in session-registry.json can be recovered.\n    if (!existsSync(rootPath) && clcMap.has(encodedDir)) {\n      const clcPath = clcMap.get(encodedDir)!;\n      if (existsSync(clcPath)) {\n        rootPath = clcPath;\n      }\n    }\n\n    if (!existsSync(rootPath)) {\n      result.skipped.push(`${encodedDir} (decoded: ${rootPath} — path not found on disk)`);\n      result.projectsScanned++;\n      continue;\n    }\n\n    // Canonicalize before upserting.\n    //\n    // ~/.claude/projects/ holds one encoded entry per path *spelling*, so a\n    // directory reachable through a symlinked prefix (~/dev -> Cloud/Development)\n    // appears twice. Decoding each to its literal path registers two projects\n    // for one directory, and session history then splits between them —\n    // whichever spelling the shell used gets the session.\n    //\n    // upsertProject looks up by root_path first, so resolving here makes the\n    // second spelling land on the row the first one created instead of\n    // creating a rival. Both encoded_dir values stay valid for locating\n    // central notes; only the project identity is unified.\n    rootPath = canonicalPath(rootPath);\n\n    const slug = slugify(basename(rootPath) || encodedDir);\n    const { id, isNew } = upsertProject(db, slug, rootPath, encodedDir);\n\n    result.projectsScanned++;\n    if (isNew) result.projectsNew++;\n    else result.projectsUpdated++;\n\n    try {\n      ensurePaiMarker(rootPath, slug);\n    } catch {\n      // Non-fatal\n    }\n\n    const claudeNotesDir = join(CLAUDE_PROJECTS_DIR, encodedDir, \"Notes\");\n\n    if (existsSync(claudeNotesDir)) {\n      const rootNotesDir = join(rootPath, \"Notes\");\n      if (claudeNotesDir !== rootNotesDir) {\n        db.prepare(\n          \"UPDATE projects SET claude_notes_dir = ?, updated_at = ? WHERE id = ?\"\n        ).run(claudeNotesDir, Date.now(), id);\n      }\n    }\n\n    if (!existsSync(claudeNotesDir)) continue;\n\n    const noteFiles = findNoteFiles(claudeNotesDir);\n\n    for (const filename of noteFiles) {\n      const parsed = parseSessionFilename(filename);\n      if (!parsed) continue;\n\n      result.sessionsScanned++;\n      const isNewSession = upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n      if (isNewSession) result.sessionsNew++;\n    }\n  }\n\n  // Phase 2: Scan project-root Notes/ for all registered active projects\n  {\n    const activeProjects = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE status = 'active'\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const project of activeProjects) {\n      const notesDir = join(project.root_path, \"Notes\");\n      if (!existsSync(notesDir)) continue;\n\n      let files: string[];\n      try {\n        files = findNoteFiles(notesDir);\n      } catch {\n        continue;\n      }\n\n      for (const filename of files) {\n        const parsed = parseSessionFilename(filename);\n        if (!parsed) continue;\n\n        result.sessionsScanned++;\n        const isNewSession = upsertSession(db, project.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n        if (isNewSession) result.sessionsNew++;\n      }\n    }\n  }\n\n  // Phase 3: Scan extra directories from config\n  const config = loadScanConfig();\n  if (config.scan_dirs.length) {\n    for (const rawDir of config.scan_dirs) {\n      const scanDir = resolveHome(rawDir);\n      if (!existsSync(scanDir)) {\n        result.skipped.push(`${rawDir} (configured scan_dir not found)`);\n        continue;\n      }\n\n      const children = readdirSync(scanDir).filter((name) => {\n        if (name.startsWith(\".\")) return false;\n        const full = join(scanDir, name);\n        try { return statSync(full).isDirectory(); } catch { return false; }\n      });\n\n      for (const child of children) {\n        // Canonicalize: a scan_dir of \"~/dev/ai\" (symlinked prefix) would\n        // otherwise register every project under the symlinked spelling and\n        // duplicate anything already registered under the resolved one.\n        const childPath = canonicalPath(join(scanDir, child));\n        const childSlug = slugify(child);\n        const childEncoded = encodeDir(childPath);\n\n        const existing = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(childPath) as { id: number } | undefined;\n\n        if (existing) {\n          result.projectsScanned++;\n          result.projectsUpdated++;\n\n          try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n          const notesDir = join(childPath, \"Notes\");\n          if (existsSync(notesDir)) {\n            const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n            for (const filename of noteFiles) {\n              const parsed = parseSessionFilename(filename);\n              if (!parsed) continue;\n              result.sessionsScanned++;\n              if (upsertSession(db, existing.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n                result.sessionsNew++;\n              }\n            }\n          }\n          continue;\n        }\n\n        const { id, isNew } = upsertProject(db, childSlug, childPath, childEncoded);\n        result.projectsScanned++;\n        if (isNew) result.projectsNew++;\n        else result.projectsUpdated++;\n\n        try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n        const notesDir = join(childPath, \"Notes\");\n        if (existsSync(notesDir)) {\n          const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n          for (const filename of noteFiles) {\n            const parsed = parseSessionFilename(filename);\n            if (!parsed) continue;\n            result.sessionsScanned++;\n            if (upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n              result.sessionsNew++;\n            }\n          }\n        }\n      }\n    }\n  }\n\n  // Phase 4: Discover PAI.md markers in scan_dirs\n  if (config.scan_dirs.length) {\n    const resolvedScanDirs = config.scan_dirs.map(resolveHome).filter(existsSync);\n    const markers = discoverPaiMarkers(resolvedScanDirs);\n\n    for (const marker of markers) {\n      const registeredRow = db\n        .prepare(\"SELECT id, root_path, slug FROM projects WHERE slug = ?\")\n        .get(marker.slug) as { id: number; root_path: string; slug: string } | undefined;\n\n      if (!registeredRow) continue;\n\n      // The marker was found by walking a scan_dir, so its projectRoot carries\n      // whatever spelling that dir used. Canonicalize before comparing —\n      // otherwise this \"repair\" step rewrites a correct root_path back to the\n      // symlinked form on every scan, undoing any deduplication.\n      const markerRoot = canonicalPath(marker.projectRoot);\n\n      if (registeredRow.root_path !== markerRoot) {\n        const newEncoded = encodeDir(markerRoot);\n        const now4 = Date.now();\n\n        const encodedOwner = db\n          .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n          .get(newEncoded) as { id: number } | undefined;\n        const pathOwner = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(markerRoot) as { id: number } | undefined;\n\n        const encodedSafe = !encodedOwner || encodedOwner.id === registeredRow.id;\n        const pathSafe = !pathOwner || pathOwner.id === registeredRow.id;\n\n        if (encodedSafe && pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, newEncoded, now4, registeredRow.id);\n        } else if (pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, now4, registeredRow.id);\n        }\n      }\n    }\n  }\n\n  // Phase 5: Backfill display_name for rows where it still equals the slug.\n  // This converts legacy entries created before the basename-based naming was\n  // introduced: \"jobs-grazyna\" → \"Jobs Grazyna\" (from basename of root_path).\n  {\n    const stale = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE display_name = slug AND root_path IS NOT NULL AND root_path != ''\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const row of stale) {\n      const name = basename(row.root_path);\n      if (name && name !== row.slug) {\n        db.prepare(\"UPDATE projects SET display_name = ?, updated_at = ? WHERE id = ?\")\n          .run(name, Date.now(), row.id);\n      }\n    }\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// cmdScan\n// ---------------------------------------------------------------------------\n\n/**\n * Run the registry scan CLI command.\n *\n * @param opts.quick  When true, skips verbose output (same scan, less noise).\n *                    The underlying scan is always incremental via upsert —\n *                    this flag exists for hook/daemon-triggered invocations that\n *                    want minimal log output.\n */\nexport function cmdScan(db: Database, opts: { quick?: boolean } = {}): void {\n  const config = loadScanConfig();\n  if (!opts.quick) {\n    console.log(dim(\"Scanning ~/.claude/projects/ ...\"));\n    if (config.scan_dirs.length) {\n      console.log(dim(`Scanning ${config.scan_dirs.length} extra dir(s): ${config.scan_dirs.join(\", \")}`));\n    }\n    console.log(dim(\"Scanning project-root Notes/ directories ...\"));\n  }\n\n  let result: ScanResult;\n  try {\n    result = performScan(db);\n  } catch (e) {\n    console.error(err(String(e)));\n    process.exit(1);\n  }\n\n  if (!opts.quick) {\n    console.log(\n      ok(`Scanned ${bold(String(result.projectsScanned))} projects, ${bold(String(result.sessionsScanned))} session notes.`)\n    );\n    console.log(dim(`  Projects: ${result.projectsNew} new, ${result.projectsUpdated} updated`));\n    console.log(dim(`  Sessions: ${result.sessionsNew} new`));\n\n    if (result.skipped.length) {\n      console.log();\n      console.log(warn(`  ${result.skipped.length} project(s) skipped (path not found on disk):`));\n      for (const s of result.skipped.slice(0, 10)) {\n        console.log(dim(`    ${s}`));\n      }\n      if (result.skipped.length > 10) {\n        console.log(dim(`    ... and ${result.skipped.length - 10} more`));\n      }\n    }\n  } else {\n    // Quick mode: single compact line (stderr so it doesn't pollute pipe output)\n    process.stderr.write(\n      `[registry-scan] ${result.projectsScanned} projects, ${result.sessionsScanned} sessions ` +\n      `(${result.projectsNew}+${result.sessionsNew} new).\\n`\n    );\n  }\n}\n","/**\n * triple-extraction-prompt.ts — Prompt template for KG triple extraction.\n *\n * Used by the session-summary-worker to extract structured facts from\n * a completed session summary and store them in the temporal knowledge graph.\n */\n\nexport function buildTripleExtractionPrompt(params: {\n  sessionContent: string;\n  projectSlug: string;\n  gitLog: string;\n}): string {\n  return `Extract structured entities and relations from this coding session.\n\nOutput a single JSON object with two arrays: \"entities\" and \"relations\".\n\nEntity types: project | person | concept | tool | file | version | decision | technology | organization\n\nRules:\n- Be SPECIFIC: entity names must be concrete (e.g., \"FSRS\", \"Glidr\", \"Matthias\")\n- Use snake_case relation verb phrases (e.g., \"uses_algorithm\", \"decided_to\", \"shipped_version\")\n- Skip opinions, speculation, and \"we should\" statements\n- Skip entities obvious from project metadata unless they have a meaningful relation\n- Maximum 15 relations per session — pick the most important\n- Each entity should have a brief description (1 sentence, what it is in this context)\n- Each relation must reference entity names that appear in the entities array\n\nExample output:\n{\n  \"entities\": [\n    {\"name\": \"Glidr\", \"type\": \"project\", \"description\": \"Flashcard app using FSRS spaced repetition\"},\n    {\"name\": \"FSRS\", \"type\": \"concept\", \"description\": \"Free Spaced Repetition Scheduler algorithm\"},\n    {\"name\": \"Matthias\", \"type\": \"person\", \"description\": \"Developer of Glidr and Quassl\"},\n    {\"name\": \"Quassl\", \"type\": \"project\", \"description\": \"iOS app being rewritten in Flutter\"},\n    {\"name\": \"Flutter\", \"type\": \"technology\", \"description\": \"Cross-platform mobile framework\"}\n  ],\n  \"relations\": [\n    {\"source\": \"Glidr\", \"relation\": \"uses_algorithm\", \"target\": \"FSRS\"},\n    {\"source\": \"Glidr\", \"relation\": \"shipped_version\", \"target\": \"1.0.5\"},\n    {\"source\": \"Matthias\", \"relation\": \"decided_to_rewrite\", \"target\": \"Quassl\"},\n    {\"source\": \"Quassl\", \"relation\": \"migrating_to\", \"target\": \"Flutter\"}\n  ]\n}\n\nPROJECT: ${params.projectSlug}\n\nSESSION CONTENT:\n${params.sessionContent}\n\nGIT COMMITS:\n${params.gitLog}\n\nJSON object (entities + relations):`;\n}\n","/**\n * kg-extraction.ts — Shared KG triple extraction logic.\n *\n * Extracted from session-summary-worker.ts so both the worker and the\n * CLI backfill (`pai kg backfill`) can use the same code path.\n *\n * Provides:\n *   - findClaudeBinary()       — locate the claude CLI\n *   - spawnClaude()            — generic prompt -> response runner (strips ANTHROPIC_API_KEY)\n *   - extractAndStoreTriples() — run the extractor prompt and persist triples to Postgres\n */\n\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport type { Pool } from \"pg\";\nimport type { Database } from \"better-sqlite3\";\n\nimport { buildTripleExtractionPrompt } from \"../daemon/templates/triple-extraction-prompt.js\";\nimport { kgAdd, kgQuery, kgInvalidate } from \"./kg.js\";\nimport { upsertKgEntity } from \"./kg-entity.js\";\n\n// ---------------------------------------------------------------------------\n// Claude CLI binary discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Find the `claude` CLI binary. Checks common installation locations first\n * (launchd PATH is minimal so bare \"claude\" often won't resolve).\n */\nexport function findClaudeBinary(): string | null {\n  const candidates = [\n    join(homedir(), \".local\", \"bin\", \"claude\"),\n    join(homedir(), \".claude\", \"local\", \"claude\"),\n    \"/usr/local/bin/claude\",\n    \"/opt/homebrew/bin/claude\",\n  ];\n\n  for (const candidate of candidates) {\n    try {\n      if (existsSync(candidate)) return candidate;\n    } catch { /* skip */ }\n  }\n  return \"claude\";\n}\n\nconst CLAUDE_TIMEOUT_MS: Record<string, number> = {\n  haiku: 60_000,\n  sonnet: 120_000,\n  opus: 300_000,\n};\n\n/**\n * Spawn the claude CLI with a prompt on stdin and return stdout.\n *\n * IMPORTANT: ANTHROPIC_API_KEY is stripped from the spawned environment so\n * the CLI uses the user's Max plan (free) instead of billing the API key.\n */\nexport async function spawnClaude(\n  prompt: string,\n  model: \"haiku\" | \"sonnet\" | \"opus\" = \"sonnet\"\n): Promise<string | null> {\n  const claudeBin = findClaudeBinary();\n  if (!claudeBin) {\n    process.stderr.write(\"[kg-extraction] claude CLI not found.\\n\");\n    return null;\n  }\n\n  const { spawn } = await import(\"node:child_process\");\n\n  return new Promise((resolve) => {\n    let timer: ReturnType<typeof setTimeout> | null = null;\n\n    const { ANTHROPIC_API_KEY: _drop, ...envWithoutApiKey } = process.env;\n    const child = spawn(\n      claudeBin,\n      [\"--model\", model, \"-p\", \"--no-session-persistence\"],\n      { env: envWithoutApiKey, stdio: [\"pipe\", \"pipe\", \"pipe\"] }\n    );\n\n    let stdout = \"\";\n    let stderr = \"\";\n\n    child.stdout.on(\"data\", (chunk: Buffer) => { stdout += chunk.toString(); });\n    child.stderr.on(\"data\", (chunk: Buffer) => { stderr += chunk.toString(); });\n\n    child.on(\"error\", (err: Error) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      process.stderr.write(`[kg-extraction] ${model} spawn error: ${err.message}\\n`);\n      resolve(null);\n    });\n\n    child.on(\"close\", (code: number | null) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      if (code !== 0) {\n        process.stderr.write(\n          `[kg-extraction] ${model} exited ${code}: ${stderr.slice(0, 300)}\\n`\n        );\n        resolve(null);\n      } else {\n        resolve(stdout.trim() || null);\n      }\n    });\n\n    timer = setTimeout(() => {\n      process.stderr.write(`[kg-extraction] ${model} timed out — killing process.\\n`);\n      child.kill(\"SIGTERM\");\n      resolve(null);\n    }, CLAUDE_TIMEOUT_MS[model] ?? 120_000);\n\n    child.stdin.write(prompt);\n    child.stdin.end();\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Triple extraction\n// ---------------------------------------------------------------------------\n\nexport interface ExtractTriplesParams {\n  summaryText: string;\n  projectSlug: string;\n  projectId: number | null;\n  sessionId: string;\n  gitLog?: string;\n  model?: \"haiku\" | \"sonnet\" | \"opus\";\n  /** Optional federation SQLite db — when provided, entities are upserted into kg_entities (QW1) */\n  federationDb?: Database;\n  /** Tenant ID for multi-tenant entity scoping (default: \"default\") */\n  tenantId?: string;\n}\n\nexport interface ExtractTriplesResult {\n  extracted: number;\n  added: number;\n  superseded: number;\n}\n\n/**\n * Extract structured KG triples from a session summary and store them in\n * Postgres. Idempotent: if a (subject, predicate) pair already has the same\n * object, no new row is added; if the object differs, the old triple is\n * invalidated (valid_to = NOW()) and a new one is inserted.\n *\n * Best-effort: per-triple errors are caught and logged but never thrown.\n * Returns a small stats object so callers can report progress.\n */\nexport async function extractAndStoreTriples(\n  pool: Pool,\n  params: ExtractTriplesParams\n): Promise<ExtractTriplesResult> {\n  const stats: ExtractTriplesResult = { extracted: 0, added: 0, superseded: 0 };\n\n  const prompt = buildTripleExtractionPrompt({\n    sessionContent: params.summaryText,\n    projectSlug: params.projectSlug,\n    gitLog: params.gitLog ?? \"\",\n  });\n\n  const jsonOutput = await spawnClaude(prompt, params.model ?? \"sonnet\");\n  if (!jsonOutput) return stats;\n\n  // Strip markdown code fences if Claude wrapped the JSON\n  const cleaned = jsonOutput\n    .replace(/^```json\\s*/m, \"\")\n    .replace(/^```\\s*/m, \"\")\n    .replace(/\\s*```$/m, \"\")\n    .trim();\n\n  // Support both legacy array format and new structured format\n  type LegacyTriple = { subject: string; predicate: string; object: string };\n  type NewRelation = { source: string; relation: string; target: string };\n  type NewEntity = { name: string; type: string; description: string };\n  type NewFormat = { entities: NewEntity[]; relations: NewRelation[] };\n\n  let triples: Array<LegacyTriple>;\n  try {\n    const parsed = JSON.parse(cleaned);\n\n    if (Array.isArray(parsed)) {\n      // Legacy format: [{subject, predicate, object}]\n      triples = parsed;\n    } else if (parsed && typeof parsed === \"object\" && Array.isArray(parsed.relations)) {\n      // New structured format: {entities: [...], relations: [...]}\n      const newFmt = parsed as NewFormat;\n\n      // QW1: Upsert entities into federation SQLite kg_entities table when db is available\n      if (params.federationDb && Array.isArray(newFmt.entities)) {\n        const tenantId = params.tenantId ?? \"default\";\n        for (const entity of newFmt.entities) {\n          if (!entity.name) continue;\n          try {\n            upsertKgEntity(params.federationDb, {\n              name: entity.name,\n              type: entity.type ?? \"unknown\",\n              description: entity.description,\n              tenantId,\n            });\n          } catch (entityErr) {\n            process.stderr.write(`[kg-extraction] entity upsert error (${entity.name}): ${entityErr}\\n`);\n          }\n        }\n      }\n\n      triples = newFmt.relations.map((r: NewRelation) => ({\n        subject: r.source,\n        predicate: r.relation,\n        object: r.target,\n      }));\n    } else {\n      process.stderr.write(`[kg-extraction] Unexpected JSON shape — neither array nor {entities,relations}\\n`);\n      return stats;\n    }\n  } catch (e) {\n    process.stderr.write(`[kg-extraction] JSON parse failed: ${e}\\n`);\n    return stats;\n  }\n\n  if (!Array.isArray(triples)) return stats;\n  stats.extracted = triples.length;\n\n  for (const t of triples) {\n    if (!t.subject || !t.predicate || !t.object) continue;\n\n    try {\n      const existing = await kgQuery(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        project_id: params.projectId ?? undefined,\n      });\n\n      // If an identical (subject, predicate, object) is already valid, skip — idempotent\n      const alreadyValid = existing.find((e) => e.object === t.object && !e.valid_to);\n      if (alreadyValid) continue;\n\n      // Invalidate any superseded triple (same subject+predicate, different object)\n      const supersedes = existing.find((e) => e.object !== t.object && !e.valid_to);\n      if (supersedes) {\n        await kgInvalidate(pool, supersedes.id);\n        stats.superseded++;\n      }\n\n      await kgAdd(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        object: t.object,\n        project_id: params.projectId ?? undefined,\n        source_session: params.sessionId,\n        confidence: \"EXTRACTED\",\n      });\n      stats.added++;\n    } catch (tripleErr) {\n      process.stderr.write(`[kg-extraction] store error (${t.subject}): ${tripleErr}\\n`);\n    }\n  }\n\n  return stats;\n}\n","/**\n * Shared \"## Continue\" checkpoint logic for a project's TODO.md.\n *\n * WHY THIS MODULE EXISTS\n * ----------------------\n * Before this, `pause.ts` and `handover.ts` each carried their own copy of\n * findProjectTodo / stripContinueSection / block-builder. Both wrote the same\n * fixed four-line block, and both stripped any existing ## Continue section\n * unconditionally. The consequence was that a rich, model-authored checkpoint\n * could never survive:\n *\n *   1. `pai pause` had no way to accept a body, so the model printed its\n *      checkpoint to the terminal and it was lost.\n *   2. Even if a body had been written by hand, the session-stop hook runs\n *      `pai session handover` on every clean exit, which regenerated the\n *      generic block and erased it.\n *\n * So there are two jobs here:\n *\n *   - AUTHORED writes (`pai pause --body-file`) carry the model's markdown\n *     verbatim, wrapped in explicit start/end markers.\n *   - AUTO writes (hooks) must never destroy an authored checkpoint belonging\n *     to the *same* session. They may replace a stale one left by an earlier\n *     session, otherwise TODO.md would show a checkpoint that no longer\n *     describes where the work stands.\n *\n * PARSING\n * -------\n * A rich body can legitimately contain `---` rules and `##` headings, which the\n * old heuristic scanner treated as section terminators. Authored blocks are\n * therefore delimited by an explicit HTML-comment pair; the legacy heuristic is\n * kept only as a fallback for blocks written before this change.\n */\n\nimport {\n  existsSync,\n  readFileSync,\n  writeFileSync,\n  readdirSync,\n  renameSync,\n  mkdirSync,\n  realpathSync,\n} from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Locations searched for a project TODO.md, in priority order. */\nexport const TODO_LOCATIONS = [\n  \"Notes/TODO.md\",\n  \".claude/Notes/TODO.md\",\n  \"tasks/todo.md\",\n  \"TODO.md\",\n];\n\nexport const MARKER_OPEN = \"<!-- pai:checkpoint\";\nexport const MARKER_CLOSE = \"<!-- /pai:checkpoint -->\";\n\nexport const CONTINUE_HEADING = \"## Continue\";\n\n/** Who wrote the checkpoint currently in TODO.md. */\nexport type Authorship = \"model\" | \"auto\";\n\n/** Result of applying a checkpoint. */\nexport type ApplyAction = \"written\" | \"preserved\" | \"failed\";\n\n// ---------------------------------------------------------------------------\n// TODO.md discovery\n// ---------------------------------------------------------------------------\n\nexport function findProjectTodo(\n  rootPath: string\n): { path: string; content: string } | null {\n  for (const rel of TODO_LOCATIONS) {\n    const full = join(rootPath, rel);\n    if (existsSync(full)) {\n      try {\n        return { path: full, content: readFileSync(full, \"utf8\") };\n      } catch {\n        // unreadable — try next\n      }\n    }\n  }\n  return null;\n}\n\n/**\n * Resolve the TODO.md to write to, creating Notes/ if nothing exists yet.\n * Returns null only when the directory could not be created.\n */\nexport function resolveTodoTarget(\n  rootPath: string,\n  opts: { create?: boolean } = {}\n): { path: string; content: string } | null {\n  const found = findProjectTodo(rootPath);\n  if (found) return found;\n\n  const notesDir = join(rootPath, \"Notes\");\n  if (opts.create !== false) {\n    try {\n      if (!existsSync(notesDir)) mkdirSync(notesDir, { recursive: true });\n    } catch {\n      return null;\n    }\n  }\n  return { path: join(notesDir, \"TODO.md\"), content: \"\" };\n}\n\n// ---------------------------------------------------------------------------\n// Marker parsing\n// ---------------------------------------------------------------------------\n\nexport interface CheckpointMeta {\n  authored: Authorship;\n  /** Session line the checkpoint describes, e.g. \"0003 - 2026-08-01 - Title\". */\n  session?: string;\n  /** Claude Code session UUID, when known. */\n  sessionId?: string;\n  ts?: string;\n}\n\n/**\n * Parse a `<!-- pai:checkpoint key=\"value\" ... -->` marker line.\n * Returns null when the line is not a marker.\n */\nexport function parseMarker(line: string): CheckpointMeta | null {\n  const trimmed = line.trim();\n  if (!trimmed.startsWith(MARKER_OPEN)) return null;\n\n  const attrs: Record<string, string> = {};\n  for (const m of trimmed.matchAll(/([a-zA-Z][\\w-]*)=\"([^\"]*)\"/g)) {\n    attrs[m[1]] = m[2];\n  }\n\n  return {\n    authored: attrs.authored === \"model\" ? \"model\" : \"auto\",\n    session: attrs.session || undefined,\n    sessionId: attrs[\"session-id\"] || undefined,\n    ts: attrs.ts || undefined,\n  };\n}\n\nexport interface LocatedContinue {\n  /** Index of the \"## Continue\" heading line. */\n  startIdx: number;\n  /** Exclusive end index, past any trailing `---` separator. */\n  endIdx: number;\n  meta: CheckpointMeta | null;\n  /** Raw lines of the section, heading included. */\n  lines: string[];\n}\n\n/**\n * Lines an auto-generated block is made of. Anything else in a section is\n * content somebody put there deliberately.\n */\nconst BOILERPLATE_PATTERNS = [\n  /^##\\s+Continue$/,\n  /^<!--\\s*\\/?pai:checkpoint/,\n  /^>\\s*\\*\\*Last session:\\*\\*/,\n  /^>\\s*\\*\\*Paused at:\\*\\*/,\n  /^>\\s*Working directory:/,\n  /^>\\s*Resume with:/,\n  /^>\\s*_No checkpoint body was recorded/,\n  /^-{3,}$/,\n];\n\n/** A blank line, with or without a blockquote marker. */\nconst BLANK_LINE = /^>?\\s*$/;\n\n/**\n * True when a section contains nothing but generated header lines.\n *\n * This is the guard that stops an auto write from destroying content it did\n * not author. A session that hit the old clobbering bug may have worked around\n * it by hand — writing its state into a subsection underneath the generated\n * header lines, in an unmarked block. Those blocks predate the marker, so\n * authorship cannot be read off them; the only safe signal is whether anything\n * beyond boilerplate is present.\n */\nexport function isBoilerplateOnly(lines: string[]): boolean {\n  return lines.every((line) => {\n    const t = line.trim();\n    return BLANK_LINE.test(t) || BOILERPLATE_PATTERNS.some((re) => re.test(t));\n  });\n}\n\n/**\n * Extract the non-boilerplate content of a section, or \"\" if there is none.\n *\n * Interior blank lines are kept. They are not decoration — in Markdown they\n * are what separates a paragraph from the table or list that follows, so\n * dropping them (as this did while it treated every blank line as boilerplate)\n * silently welds a checkpoint body into one unreadable run.\n */\nexport function extractSectionContent(lines: string[]): string {\n  const kept: string[] = [];\n  for (const line of lines) {\n    const t = line.trim();\n    if (BOILERPLATE_PATTERNS.some((re) => re.test(t))) continue;\n    kept.push(line);\n  }\n  return trimBlankEdges(collapseBlankRuns(kept)).join(\"\\n\");\n}\n\n/** Drop leading and trailing blank lines, leaving interior spacing alone. */\nfunction trimBlankEdges(lines: string[]): string[] {\n  let start = 0;\n  let end = lines.length;\n  while (start < end && BLANK_LINE.test(lines[start].trim())) start += 1;\n  while (end > start && BLANK_LINE.test(lines[end - 1].trim())) end -= 1;\n  return lines.slice(start, end);\n}\n\n/**\n * Collapse runs of blank lines to a single blank.\n *\n * Removing a boilerplate line leaves the blank that surrounded it behind, so\n * stripping the header can open a three-line gap in the middle of the body.\n * One blank line is all Markdown needs.\n */\nfunction collapseBlankRuns(lines: string[]): string[] {\n  const out: string[] = [];\n  let lastWasBlank = false;\n  for (const line of lines) {\n    const isBlank = BLANK_LINE.test(line.trim());\n    if (isBlank && lastWasBlank) continue;\n    out.push(line);\n    lastWasBlank = isBlank;\n  }\n  return out;\n}\n\n/**\n * Locate the existing ## Continue section.\n *\n * When the section carries an explicit marker pair, the close marker defines\n * the end — this is what lets a rich body contain `---` and `##` safely.\n * Otherwise the legacy heuristic applies: stop at the first `---` or the next\n * `##` heading.\n */\nexport function locateContinue(content: string): LocatedContinue | null {\n  const lines = content.split(\"\\n\");\n  const startIdx = lines.findIndex((l) => l.trim() === CONTINUE_HEADING);\n  if (startIdx === -1) return null;\n\n  // Look for an open marker in the first few lines of the section.\n  let meta: CheckpointMeta | null = null;\n  let markerIdx = -1;\n  for (let i = startIdx + 1; i < Math.min(startIdx + 6, lines.length); i++) {\n    const parsed = parseMarker(lines[i]);\n    if (parsed) {\n      meta = parsed;\n      markerIdx = i;\n      break;\n    }\n    // A non-blank, non-marker line means there is no marker for this section.\n    if (lines[i].trim() !== \"\") break;\n  }\n\n  let endIdx = lines.length;\n\n  if (markerIdx !== -1) {\n    const closeIdx = lines.findIndex(\n      (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n    );\n    if (closeIdx !== -1) {\n      endIdx = closeIdx + 1;\n    } else {\n      // Malformed (open without close) — fall back to the heuristic so we do\n      // not swallow the rest of the file.\n      endIdx = heuristicEnd(lines, startIdx);\n    }\n  } else {\n    endIdx = heuristicEnd(lines, startIdx);\n  }\n\n  // Consume one trailing `---` separator and the blank lines around it.\n  let trailingEnd = endIdx;\n  while (trailingEnd < lines.length && lines[trailingEnd].trim() === \"\") {\n    trailingEnd += 1;\n  }\n  if (trailingEnd < lines.length && lines[trailingEnd].trim() === \"---\") {\n    trailingEnd += 1;\n  } else {\n    trailingEnd = endIdx;\n  }\n\n  return {\n    startIdx,\n    endIdx: trailingEnd,\n    meta,\n    lines: lines.slice(startIdx, trailingEnd),\n  };\n}\n\n/**\n * Legacy scanner for blocks written before checkpoint markers existed.\n *\n * Terminates on a horizontal rule or the next level-2 heading. Note the\n * `(?!#)` — `###` is a *subsection* of `## Continue`, not a terminator. The\n * original scanner stopped at any run of `#`, which meant a `### Restored\n * state` subsection fell outside the section entirely and could not be seen,\n * let alone carried forward.\n */\nfunction heuristicEnd(lines: string[], startIdx: number): number {\n  for (let i = startIdx + 1; i < lines.length; i++) {\n    const trimmed = lines[i].trim();\n    if (\n      trimmed === \"---\" ||\n      (/^##(?!#)/.test(trimmed) && trimmed !== CONTINUE_HEADING)\n    ) {\n      return i;\n    }\n  }\n  return lines.length;\n}\n\n/** Remove the ## Continue section, returning the remainder of the document. */\nexport function stripContinue(content: string): string {\n  const found = locateContinue(content);\n  if (!found) return content;\n\n  const lines = content.split(\"\\n\");\n  const before = lines.slice(0, found.startIdx);\n  const after = lines.slice(found.endIdx);\n  while (after.length > 0 && after[0].trim() === \"\") after.shift();\n\n  return [...before, ...after].join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Reading a checkpoint back\n// ---------------------------------------------------------------------------\n\nexport interface ContinueCheckpoint {\n  meta: CheckpointMeta | null;\n  /** The authored body — the section with generated header lines removed. */\n  body: string;\n  /** The full section, heading included. */\n  raw: string;\n}\n\n/**\n * Read the `## Continue` checkpoint out of a TODO.md.\n *\n * Writing a checkpoint is only half of a handover; something has to deliver it\n * to the next session. This is the read side, used by the SessionStart hook.\n *\n * Returns null when there is no section, or when the section holds nothing but\n * generated header lines — a bodyless block carries no information a new\n * session does not already have, and injecting it would only add noise.\n */\nexport function readContinueCheckpoint(\n  content: string\n): ContinueCheckpoint | null {\n  const found = locateContinue(content);\n  if (!found) return null;\n\n  const body = found.meta\n    ? extractMarkedBody(found.lines)\n    : extractSectionContent(found.lines);\n  if (!body) return null;\n\n  return { meta: found.meta, body, raw: found.lines.join(\"\\n\") };\n}\n\n/**\n * Extract the body of a marker-delimited block by position rather than by\n * pattern.\n *\n * The layout is fixed: open marker, a contiguous run of `>` header lines, the\n * body, then the close marker. Because the boundaries are known exactly, the\n * body comes back byte-for-byte — including any `---` rules or `##` headings\n * of its own, which a pattern-based filter would mistake for boilerplate and\n * delete. Falls back to the pattern filter if the shape is not as expected.\n */\nfunction extractMarkedBody(lines: string[]): string {\n  const markerIdx = lines.findIndex((l) => parseMarker(l) !== null);\n  if (markerIdx === -1) return extractSectionContent(lines);\n\n  const closeIdx = lines.findIndex(\n    (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n  );\n  if (closeIdx === -1) return extractSectionContent(lines);\n\n  // Skip the blank lines and the `>` header run that follow the open marker.\n  let bodyStart = markerIdx + 1;\n  while (bodyStart < closeIdx) {\n    const t = lines[bodyStart].trim();\n    if (BLANK_LINE.test(t) || t.startsWith(\">\")) {\n      bodyStart += 1;\n      continue;\n    }\n    break;\n  }\n\n  return trimBlankEdges(lines.slice(bodyStart, closeIdx)).join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Block construction\n// ---------------------------------------------------------------------------\n\nexport interface BuildOptions {\n  authored: Authorship;\n  /** Human-readable session line, or \"Unknown session\". */\n  sessionLine: string;\n  /** Claude Code session UUID — the `claude --resume` handle. */\n  sessionId?: string;\n  cwd: string;\n  /** Model-authored markdown. Omitted for auto blocks. */\n  body?: string;\n  /** Overridable for deterministic tests. */\n  timestamp?: string;\n}\n\nfunction escapeAttr(value: string): string {\n  return value.replace(/\"/g, \"'\");\n}\n\nexport function buildContinueBlock(opts: BuildOptions): string {\n  const ts = opts.timestamp ?? new Date().toISOString();\n\n  const attrs = [\n    `authored=\"${opts.authored}\"`,\n    `session=\"${escapeAttr(opts.sessionLine)}\"`,\n    opts.sessionId ? `session-id=\"${escapeAttr(opts.sessionId)}\"` : null,\n    `ts=\"${ts}\"`,\n  ]\n    .filter(Boolean)\n    .join(\" \");\n\n  const header = [\n    `> **Last session:** ${opts.sessionLine}`,\n    `> **Paused at:** ${ts}`,\n    \">\",\n    `> Working directory: ${opts.cwd}`,\n  ];\n\n  if (opts.sessionId) {\n    header.push(\">\", `> Resume with: \\`claude --resume ${opts.sessionId}\\``);\n  }\n\n  const body = (opts.body ?? \"\").trim();\n\n  const parts = [\n    CONTINUE_HEADING,\n    \"\",\n    `${MARKER_OPEN} ${attrs} -->`,\n    \"\",\n    ...header,\n  ];\n\n  if (body) {\n    parts.push(\"\", body);\n  } else {\n    parts.push(\n      \">\",\n      \"> _No checkpoint body was recorded — see the latest session note._\"\n    );\n  }\n\n  parts.push(\"\", MARKER_CLOSE, \"\", \"---\", \"\");\n\n  return parts.join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Apply\n// ---------------------------------------------------------------------------\n\nexport interface ApplyOptions extends BuildOptions {\n  /** Project root; TODO.md is resolved beneath it. */\n  rootPath: string;\n  /** Preview only — nothing is written. */\n  dryRun?: boolean;\n}\n\nexport interface ApplyResult {\n  action: ApplyAction;\n  path: string | null;\n  block: string;\n  /** Set when action === \"preserved\". */\n  preservedMeta?: CheckpointMeta;\n  /** Set when unattributed content was carried forward into the new block. */\n  carriedForward?: boolean;\n  error?: string;\n}\n\n/**\n * Write the ## Continue block, honouring the preservation rules.\n *\n * An AUTO write is unattended — it fires from the session-stop and pre-compact\n * hooks — so it operates under one governing rule: **never destroy content it\n * did not author.** Three cases follow from that:\n *\n *   1. An authored checkpoint for the SAME session is left untouched. The hooks\n *      fire after the model has already recorded the real state; overwriting it\n *      with metadata is the bug this module exists to fix.\n *\n *      \"Same session\" is decided by the Claude session UUID whenever both sides\n *      know it, and only falls back to the human-readable session line when one\n *      of them does not. The line is derived from the session note filename,\n *      and `session-stop.sh` *renames and renumbers that file* — via `session\n *      slug --apply` and `session cleanup --execute` — before it reaches the\n *      handover step. So the key the hook computes at exit is not the key the\n *      model wrote seconds earlier, and a filename-keyed comparison mismatches\n *      by construction. Observed live on 2026-08-01: notes renumbered twice\n *      within a single session. The UUID is the only identifier that holds\n *      still.\n *   2. An authored checkpoint from an EARLIER session is stale — TODO.md would\n *      otherwise keep pointing at the wrong session — so it is replaced. Its\n *      content is not lost: `pai pause` mirrors every authored body into the\n *      session note.\n *   3. An UNMARKED block predates the marker, so authorship cannot be read off\n *      it. If it is nothing but generated header lines it is replaced. If it\n *      carries anything else, that content was put there deliberately — quite\n *      possibly as a hand-rolled workaround for the very clobbering this fixes —\n *      and is carried forward into the new block rather than dropped.\n *\n * A MODEL write always replaces: the model is authoring the checkpoint, and a\n * newer one supersedes an older one.\n */\n/**\n * Do an existing checkpoint and an incoming write describe the same session?\n *\n * The UUID is authoritative when both sides carry one: it is assigned by Claude\n * Code and never changes for the life of the session. The session line is a\n * derived, mutable label and is only consulted when there is no UUID to compare\n * — a checkpoint written before `--session-id` was threaded through, or an auto\n * write from a caller that was not given one.\n */\nfunction isSameSession(\n  meta: CheckpointMeta,\n  opts: Pick<ApplyOptions, \"sessionId\" | \"sessionLine\">\n): boolean {\n  if (meta.sessionId && opts.sessionId) {\n    return meta.sessionId === opts.sessionId;\n  }\n  return meta.session === opts.sessionLine;\n}\n\nexport function applyContinue(opts: ApplyOptions): ApplyResult {\n  const target = resolveTodoTarget(opts.rootPath, { create: !opts.dryRun });\n  if (!target) {\n    return {\n      action: \"failed\",\n      path: null,\n      block: buildContinueBlock(opts),\n      error: \"Could not resolve or create a TODO.md target\",\n    };\n  }\n\n  const existing = locateContinue(target.content);\n  let carriedForward = false;\n  let effectiveBody = opts.body;\n\n  if (opts.authored === \"auto\" && existing) {\n    // Case 1 — authored, same session: hands off.\n    if (existing.meta?.authored === \"model\" && isSameSession(existing.meta, opts)) {\n      return {\n        action: \"preserved\",\n        path: target.path,\n        block: buildContinueBlock(opts),\n        preservedMeta: existing.meta,\n      };\n    }\n\n    // Case 1b — the incoming write carries no body at all, and what is already\n    // there does. A metadata-only block says \"see the latest session note\", so\n    // replacing a real handover with one trades content for a pointer — and the\n    // pointer is not always good: observed live on 2026-08-01 in the AIBroker\n    // project, where the stop hook's bodyless handover overwrote the autosave's\n    // body and named a session note that had never been created, leaving the\n    // next session nothing to resume from.\n    //\n    // Deferring to the session note is only safe when the note demonstrably has\n    // the content. This code cannot see that, so it does the one thing that is\n    // never wrong: a write with nothing to say does not get to destroy\n    // something that does. A stale-but-real handover beats a fresh dead link.\n    // Scoped to blocks we marked. 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package/dist/cli/index.mjs

@@ -7,12 +7,13 @@ import "../helpers-crDEr6S2.mjs";
 import "../sync--BoxBBok.mjs";
 import "../embeddings-Bn86ssxR.mjs";
 import "../search-CpTv1I24.mjs";
-import "../pick-BROEyWxI.mjs";
-import "../checkpoint-block-D5IyLLTr.mjs";
+import "../pick-BRdJ4gpT.mjs";
+import "../checkpoint-block-CkvwYA5y.mjs";
 import "../indexer-AEcT8wHf.mjs";
-import "../config-7UiKVmbE.mjs";
-import "../factory-0-57Ac-7.mjs";
-import "../main-resolver-DimnS2qP.mjs";
+import "../ipc-client-aVKVERjJ.mjs";
+import "../config-CcdkNSWa.mjs";
+import "../factory-1UI19STL.mjs";
+import "../main-resolver-BozXCqpl.mjs";
 import { buildProgram } from "./program.mjs";
 
 //#region src/cli/index.ts

package/dist/cli/index.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.mjs","names":[],"sources":["../../src/cli/index.ts"],"sourcesContent":["#!/usr/bin/env node\n/**\n * PAI Knowledge OS — CLI entry point.\n *\n * Thin entry: builds the Commander program (see ./program.ts) and parses argv.\n * All command construction lives in buildProgram() so the docs generator can\n * introspect the same tree that powers `--help`.\n *\n * Daily surface:\n *   pai                    → deduped session listing (one row per name)\n *   pai <name>             → universal: switch live tab / resume / fresh\n *   pai <uuid-prefix>      → direct session resume via filesystem scan\n *   pai pause [all]        → save state (or mass-pause every live session)\n *   pai end                → finalize session\n *   pai help [area]        → rich man page for a command area\n */\n\nimport { buildProgram } from \"./program.js\";\n\nbuildProgram().parse(process.argv);\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAmBA,cAAc,CAAC,MAAM,QAAQ,KAAK"}
+{"version":3,"file":"index.mjs","names":[],"sources":["../../src/cli/index.ts"],"sourcesContent":["#!/usr/bin/env node\n/**\n * PAI Knowledge OS — CLI entry point.\n *\n * Thin entry: builds the Commander program (see ./program.ts) and parses argv.\n * All command construction lives in buildProgram() so the docs generator can\n * introspect the same tree that powers `--help`.\n *\n * Daily surface:\n *   pai                    → deduped session listing (one row per name)\n *   pai <name>             → universal: switch live tab / resume / fresh\n *   pai <uuid-prefix>      → direct session resume via filesystem scan\n *   pai pause [all]        → save state (or mass-pause every live session)\n *   pai end                → finalize session\n *   pai help [area]        → rich man page for a command area\n */\n\nimport { buildProgram } from \"./program.js\";\n\nbuildProgram().parse(process.argv);\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAmBA,cAAc,CAAC,MAAM,QAAQ,KAAK"}

package/dist/cli/program.mjs

@@ -6,12 +6,13 @@ import "../helpers-crDEr6S2.mjs";
 import "../sync--BoxBBok.mjs";
 import "../embeddings-Bn86ssxR.mjs";
 import "../search-CpTv1I24.mjs";
-import { A as registerProjectsCommands, C as registerRestoreCommands, D as registerIdentityCommands, E as registerMcpCommands, M as resolveIdentifier, O as registerMemoryCommands, S as registerSetupCommand, T as registerDaemonCommands, _ as registerUpdateCommand, a as cmdEnd, b as registerZettelCommands, c as cmdGoto, d as registerHelpCommand, f as registerDbCommands, g as registerNotifyCommands, h as registerTaskCommands, i as cmdPauseAll, j as findMovedPath, k as registerRegistryCommands, l as cmdPause, m as registerTopicCommands, n as cmdFind, o as registerSessionCleanupCommand, p as registerKgCommands, r as cmdClearNames, s as registerSessionCommands, t as cmdPick, u as cmdList, v as registerSkillCommands, w as registerBackupCommands, x as registerObsidianCommands, y as registerObservationCommands } from "../pick-BROEyWxI.mjs";
-import "../checkpoint-block-D5IyLLTr.mjs";
+import { A as registerProjectsCommands, C as registerRestoreCommands, D as registerIdentityCommands, E as registerMcpCommands, M as resolveIdentifier, O as registerMemoryCommands, S as registerSetupCommand, T as registerDaemonCommands, _ as registerUpdateCommand, a as cmdEnd, b as registerZettelCommands, c as cmdGoto, d as registerHelpCommand, f as registerDbCommands, g as registerNotifyCommands, h as registerTaskCommands, i as cmdPauseAll, j as findMovedPath, k as registerRegistryCommands, l as cmdPause, m as registerTopicCommands, n as cmdFind, o as registerSessionCleanupCommand, p as registerKgCommands, r as cmdClearNames, s as registerSessionCommands, t as cmdPick, u as cmdList, v as registerSkillCommands, w as registerBackupCommands, x as registerObsidianCommands, y as registerObservationCommands } from "../pick-BRdJ4gpT.mjs";
+import "../checkpoint-block-CkvwYA5y.mjs";
 import "../indexer-AEcT8wHf.mjs";
-import "../config-7UiKVmbE.mjs";
-import "../factory-0-57Ac-7.mjs";
-import { t as cmdMain } from "../main-resolver-DimnS2qP.mjs";
+import "../ipc-client-aVKVERjJ.mjs";
+import "../config-CcdkNSWa.mjs";
+import "../factory-1UI19STL.mjs";
+import { t as cmdMain } from "../main-resolver-BozXCqpl.mjs";
 import { existsSync, readFileSync } from "node:fs";
 import { basename, dirname, join } from "node:path";
 import { Command } from "commander";

package/dist/cli/program.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"program.mjs","names":[],"sources":["../../src/cli/program.ts"],"sourcesContent":["/**\n * PAI CLI — Commander program builder.\n *\n * Constructs the full `pai` command tree WITHOUT parsing argv. This separation\n * lets the documentation generator (scripts/build-docs.mjs) import and introspect\n * the live program object — the single source of truth for `--help`, the\n * generated man pages, and `pai help <area>`.\n *\n * The thin entry point (cli/index.ts) imports buildProgram() and calls parse().\n */\n\nimport { Command } from \"commander\";\nimport { readFileSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { openRegistry } from \"../registry/db.js\";\nimport type { Database } from \"better-sqlite3\";\nimport { registerProjectsCommands } from \"./commands/project/projects-index.js\";\nimport { findMovedPath } from \"./commands/project/commands.js\";\nimport { existsSync } from \"node:fs\";\nimport { basename } from \"node:path\";\nimport { registerRegistryCommands } from \"./commands/registry.js\";\nimport { registerMemoryCommands } from \"./commands/memory.js\";\nimport { registerIdentityCommands } from \"./commands/identity.js\";\nimport { registerMcpCommands } from \"./commands/mcp.js\";\nimport { registerDaemonCommands } from \"./commands/daemon.js\";\nimport { registerBackupCommands } from \"./commands/backup.js\";\nimport { registerRestoreCommands } from \"./commands/restore.js\";\nimport { registerSetupCommand } from \"./commands/setup.js\";\nimport { registerObsidianCommands } from \"./commands/obsidian.js\";\nimport { registerZettelCommands } from \"./commands/zettel.js\";\nimport { registerObservationCommands } from \"./commands/observation.js\";\nimport { registerSkillCommands } from \"./commands/skill.js\";\nimport { registerUpdateCommand } from \"./commands/update.js\";\nimport { registerNotifyCommands } from \"./commands/notify.js\";\nimport { registerTaskCommands } from \"./commands/task.js\";\nimport { registerTopicCommands } from \"./commands/topic.js\";\nimport { registerKgCommands } from \"./commands/kg.js\";\nimport { registerDbCommands } from \"./commands/db.js\";\nimport { registerHelpCommand } from \"./commands/help.js\";\nimport { registerSessionCommands } from \"./commands/session/index.js\";\nimport { registerSessionCleanupCommand } from \"./commands/session-cleanup/index.js\";\nimport { err, warn, ok, dim, shortenPath, encodeDir, now } from \"./utils.js\";\nimport { cmdPause } from \"./commands/session/pause.js\";\nimport { cmdEnd } from \"./commands/session/end.js\";\nimport { cmdGoto } from \"./commands/session/goto.js\";\nimport { cmdPauseAll } from \"./commands/session/pause-all.js\";\nimport { cmdClearNames } from \"./commands/session/clear-names.js\";\nimport { cmdList as cmdNotesList } from \"./commands/session/commands.js\";\nimport { resolveIdentifier } from \"./commands/project/helpers.js\";\nimport { cmdFind } from \"./commands/find.js\";\nimport { cmdMain } from \"./commands/main-resolver.js\";\nimport { cmdPick } from \"./commands/pick.js\";\n\n// ---------------------------------------------------------------------------\n// Version resolution\n// ---------------------------------------------------------------------------\n\nfunction getVersion(): string {\n  try {\n    const __dirname = dirname(fileURLToPath(import.meta.url));\n    const pkgPath = join(__dirname, \"../../package.json\");\n    const pkg = JSON.parse(readFileSync(pkgPath, \"utf8\")) as { version?: string };\n    return pkg.version ?? \"0.0.0\";\n  } catch {\n    return \"0.0.0\";\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Lazy database singleton\n// ---------------------------------------------------------------------------\n\nlet _db: Database | null = null;\n\nfunction getDb(): Database {\n  if (!_db) {\n    try {\n      _db = openRegistry();\n    } catch (e) {\n      console.error(err(`Failed to open PAI registry: ${e}`));\n      process.exit(1);\n    }\n  }\n  return _db;\n}\n\n// ---------------------------------------------------------------------------\n// Program builder\n// ---------------------------------------------------------------------------\n\n/**\n * Build and return the fully configured `pai` Commander program.\n * Does NOT call parse — the caller (cli/index.ts) does that.\n */\nexport function buildProgram(): Command {\n  const program = new Command();\n\n  program\n    .name(\"pai\")\n    .description(\"PAI Knowledge OS — Personal AI Infrastructure CLI\")\n    .version(getVersion(), \"-V, --version\", \"Print version and exit\")\n    .addHelpText(\n      \"after\",\n      `\nDaily commands:\n  pai                     Show your work: live tabs + recent sessions + recent projects\n  pai <name>              Switch / resume / fresh — universal\n  pai pause [all]         Pause current (or all live) sessions\n  pai end                 Finalize current session\n\nSubcommands (rarely needed):\n  pai projects ...        Project registry management (cd, rebind, info, ...)\n  pai registry ...        Registry maintenance (scan, ...)\n  pai memory ...          Memory engine (index, search, ...)\n  pai shell-init          Shell integration (eval \"$(pai shell-init)\")\n\nRecovery:\n  pai clear-names         Wipe corrupt iTerm tab-name store\n\nExamples:\n  pai aibroker            Switch to the live AIBroker tab in iTerm\n  pai mdf                 Find sessions where you worked on MDF\n  pai 81c5c3dc            Resume session by UUID prefix\n  pai --all               Show everything including cold and zero-session projects`\n    );\n\n  // -------------------------------------------------------------------------\n  // pai projects  (canonical plural namespace)\n  // -------------------------------------------------------------------------\n\n  const projectsCmd = program\n    .command(\"projects\")\n    .description(\"Manage registered projects (list, cd, add, info, ...)\");\n\n  registerProjectsCommands(projectsCmd, getDb);\n\n  // Singular alias: `pai project` → `pai projects`\n  const projectCmd = program\n    .command(\"project\")\n    .description(\"Alias for `pai projects`\");\n\n  registerProjectsCommands(projectCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai sessions  (alias for the unified `pai` listing)\n  // -------------------------------------------------------------------------\n\n  // -------------------------------------------------------------------------\n  // pai session <subcommand>\n  //\n  // These were written, exported and never wired: neither\n  // registerSessionCommands nor registerSessionCleanupCommand was called from\n  // anywhere, so every `pai session <x>` fell through to the default `query`\n  // resolver and was interpreted as a prompt-history search.\n  //\n  // That is why session-stop.sh has been a near no-op — all four of its calls\n  // (`session cleanup --execute`, `session checkpoint`, `session slug --apply`,\n  // `session handover`) failed silently behind `2>/dev/null || true`.\n  // -------------------------------------------------------------------------\n\n  const sessionCmd = program\n    .command(\"session\")\n    .description(\n      \"Session management: list, info, checkpoint, handover, cleanup, slug, tag, route.\\n\" +\n        \"Short forms: `pai pause`, `pai end`, `pai resume <name>`.\"\n    );\n\n  registerSessionCommands(sessionCmd, getDb);\n  registerSessionCleanupCommand(sessionCmd, getDb);\n\n  program\n    .command(\"sessions\")\n    .description(\"Alias for `pai` — show the unified deduped listing.\")\n    .option(\"--all\", \"Show all entries including cold / zero-session / archived projects\")\n    .option(\"-n, --n <count>\", \"Max candidates for history search\", \"20\")\n    .action(async (opts: { all?: boolean; n?: string }) => {\n      await cmdMain(getDb(), undefined, undefined, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // pai registry\n  // -------------------------------------------------------------------------\n\n  const registryCmd = program\n    .command(\"registry\")\n    .description(\"Registry maintenance: scan, migrate, stats, rebuild\");\n\n  registerRegistryCommands(registryCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai memory\n  // -------------------------------------------------------------------------\n\n  const memoryCmd = program\n    .command(\"memory\")\n    .description(\"Memory engine: index, search, and status\");\n\n  registerMemoryCommands(memoryCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai identity\n  // -------------------------------------------------------------------------\n\n  const identityCmd = program\n    .command(\"identity\")\n    .description(\"Declare who you are: self addresses and where mail is delivered\");\n\n  registerIdentityCommands(identityCmd);\n\n  // -------------------------------------------------------------------------\n  // pai mcp\n  // -------------------------------------------------------------------------\n\n  const mcpCmd = program\n    .command(\"mcp\")\n    .description(\"MCP server management: install and status\");\n\n  registerMcpCommands(mcpCmd);\n\n  // -------------------------------------------------------------------------\n  // pai daemon\n  // -------------------------------------------------------------------------\n\n  const daemonCmd = program\n    .command(\"daemon\")\n    .description(\"PAI daemon management: serve, status, restart, install, uninstall, logs\");\n\n  registerDaemonCommands(daemonCmd);\n\n  // -------------------------------------------------------------------------\n  // pai backup / pai restore\n  // -------------------------------------------------------------------------\n\n  registerBackupCommands(program);\n  registerRestoreCommands(program);\n\n  // -------------------------------------------------------------------------\n  // pai setup / pai update\n  // -------------------------------------------------------------------------\n\n  registerSetupCommand(program);\n  registerUpdateCommand(program);\n\n  // -------------------------------------------------------------------------\n  // pai notify\n  // -------------------------------------------------------------------------\n\n  const notifyCmd = program\n    .command(\"notify\")\n    .description(\"Notification config: status, get, set, test, send\");\n\n  registerNotifyCommands(notifyCmd);\n\n  // -------------------------------------------------------------------------\n  // pai task\n  // -------------------------------------------------------------------------\n\n  const taskCmd = program\n    .command(\"task\")\n    .alias(\"tasks\")\n    .description(\"Task bus: list, add, dispatch, and complete cross-session work\");\n\n  registerTaskCommands(taskCmd);\n\n  // -------------------------------------------------------------------------\n  // pai topic\n  // -------------------------------------------------------------------------\n\n  const topicCmd = program\n    .command(\"topic\")\n    .description(\"Topic shift detection: check whether context has drifted to a different project\");\n\n  registerTopicCommands(topicCmd);\n\n  // -------------------------------------------------------------------------\n  // pai kg\n  // -------------------------------------------------------------------------\n\n  const kgCmd = program\n    .command(\"kg\")\n    .description(\"Temporal knowledge graph: backfill, query, list, stats\");\n\n  registerKgCommands(kgCmd);\n\n  // -------------------------------------------------------------------------\n  // pai db\n  // -------------------------------------------------------------------------\n\n  const dbCmd = program\n    .command(\"db\")\n    .description(\"Database inspection: query, tables, schema (sqlite or postgres)\");\n\n  registerDbCommands(dbCmd);\n\n  // -------------------------------------------------------------------------\n  // pai obsidian\n  // -------------------------------------------------------------------------\n\n  const obsidianCmd = program\n    .command(\"obsidian\")\n    .description(\"Obsidian vault: sync project notes, view status, open in Obsidian\");\n\n  registerObsidianCommands(obsidianCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai zettel\n  // -------------------------------------------------------------------------\n\n  const zettelCmd = program\n    .command(\"zettel\")\n    .description(\"Zettelkasten intelligence: explore, surprise, converse, themes, health, suggest\");\n\n  registerZettelCommands(zettelCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai observation\n  // -------------------------------------------------------------------------\n\n  const observationCmd = program\n    .command(\"observation\")\n    .description(\"Observation capture: list, search, and stats\");\n\n  registerObservationCommands(observationCmd);\n\n  // -------------------------------------------------------------------------\n  // pai skill\n  // -------------------------------------------------------------------------\n\n  const skillCmd = program\n    .command(\"skill\")\n    .description(\"Skill telemetry and (future) discovery for the self-educating skill system\");\n\n  registerSkillCommands(skillCmd);\n\n  // -------------------------------------------------------------------------\n  // pai help [area]  — rich man-page viewer for the generated docs\n  // -------------------------------------------------------------------------\n\n  registerHelpCommand(program);\n\n  // -------------------------------------------------------------------------\n  // DAILY VERBS — top-level\n  // -------------------------------------------------------------------------\n\n  // pai pause [all] [--dry-run] [--exit] [--wait <ms>]\n  program\n    .command(\"pause [target]\")\n    .description(\n      \"Save state and display safe-exit instructions for the current session.\\n\" +\n        \"Writes a ## Continue checkpoint to the project's TODO.md.\\n\" +\n        \"Use `pai pause all` to pause every live session via AIBroker.\"\n    )\n    .option(\"--dry-run\", \"Preview changes without writing them\")\n    .option(\n      \"--body-file <path>\",\n      \"File holding the checkpoint markdown to persist ('-' reads stdin). Required unless --no-body.\"\n    )\n    .option(\n      \"--session-id <uuid>\",\n      \"Claude Code session UUID — recorded as the `claude --resume` handle\"\n    )\n    .option(\n      \"--no-body\",\n      \"Deliberately write a metadata-only checkpoint (no content)\"\n    )\n    .option(\"--exit\", \"(pause all only) Also send /exit to each session after pausing\")\n    .option(\n      \"--wait <ms>\",\n      \"(pause all only) Max milliseconds to wait for a session to finish its\\n\" +\n        \"checkpoint before /exit. Not a fixed delay — sessions are exited as soon\\n\" +\n        \"as they return to the prompt, and any still busy at the deadline are left\\n\" +\n        \"open rather than killed mid-write. (default: 180000)\",\n      \"180000\"\n    )\n    .action(async (target: string | undefined, opts: { dryRun?: boolean; exit?: boolean; wait?: string; bodyFile?: string; sessionId?: string; body?: boolean }) => {\n      if (target === \"all\") {\n        await cmdPauseAll({\n          exit: opts.exit,\n          dryRun: opts.dryRun,\n          wait: opts.wait !== undefined ? parseInt(opts.wait, 10) : undefined,\n        });\n      } else {\n        if (target !== undefined) {\n          console.error(err(`Unknown target: ${target}. Did you mean 'pai pause all'?`));\n          process.exitCode = 1;\n          return;\n        }\n        // Commander maps `--no-body` to opts.body === false.\n        cmdPause(getDb(), {\n          dryRun: opts.dryRun,\n          bodyFile: opts.bodyFile,\n          sessionId: opts.sessionId,\n          noBody: opts.body === false,\n        });\n      }\n    });\n\n  // pai end [--body-file <path>] [--session-id <uuid>] [--no-body] [--dry-run]\n  program\n    .command(\"end\")\n    .description(\n      \"Finalize a session: save state, mark note Completed, display safe-exit instructions.\"\n    )\n    .option(\"--dry-run\", \"Preview all changes without writing them\")\n    .option(\n      \"--body-file <path>\",\n      \"File holding the checkpoint markdown to persist ('-' reads stdin). Required unless --no-body.\"\n    )\n    .option(\n      \"--session-id <uuid>\",\n      \"Claude Code session UUID — recorded as the `claude --resume` handle\"\n    )\n    .option(\n      \"--no-body\",\n      \"Deliberately write a metadata-only checkpoint (no content)\"\n    )\n    .action((opts: { dryRun?: boolean; bodyFile?: string; sessionId?: string; body?: boolean }) => {\n      cmdEnd(getDb(), {\n        dryRun: opts.dryRun,\n        bodyFile: opts.bodyFile,\n        sessionId: opts.sessionId,\n        noBody: opts.body === false,\n      });\n    });\n\n  // pai clear-names [--dry-run]  — recovery: wipe corrupt iTerm/JSON name store\n  program\n    .command(\"clear-names\")\n    .description(\n      \"Recovery: wipe corrupted iTerm2 session name state.\\n\" +\n        \"Clears ~/.aibroker/session-names.json AND user.paiName from all live iTerm2 sessions.\\n\" +\n        \"After running this, use /Name to re-label each tab.\"\n    )\n    .option(\"--dry-run\", \"Preview what would be cleared without making changes\")\n    .action(async (opts: { dryRun?: boolean }) => {\n      await cmdClearNames(opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // HIDDEN COMPAT ALIASES\n  // -------------------------------------------------------------------------\n\n  // pai resume <name> [--dry-run]  — hidden; prefer `pai <name>`\n  program\n    .command(\"resume <name>\", { hidden: true })\n    .description(\"Go to a session by name or UUID (prefer: pai <name>)\")\n    .option(\"--dry-run\", \"Print the exact argv and cwd, then exit without launching\")\n    .action((name: string, opts: { dryRun?: boolean }) => {\n      cmdGoto(getDb(), name, { dryRun: opts.dryRun });\n    });\n\n  // pai cd <identifier>  — hidden; shell wrapper uses this\n  program\n    .command(\"cd <identifier>\", { hidden: true })\n    .description(\"cd to a project directory (shell wrapper handles the actual cd)\")\n    .action((identifier: string) => {\n      const db = getDb();\n      const project = resolveIdentifier(db, identifier);\n      if (!project) {\n        console.error(`Project not found: ${identifier}`);\n        process.exit(1);\n        return;\n      }\n\n      if (existsSync(project.root_path)) {\n        process.stdout.write(project.root_path + \"\\n\");\n        return;\n      }\n\n      process.stderr.write(\n        warn(`Path not found: ${project.root_path}\\n`) +\n        dim(\"  Searching for moved location...\\n\")\n      );\n\n      const result = findMovedPath(project.root_path);\n\n      if (result.found) {\n        const newPath = result.found;\n        const newEncoded = encodeDir(newPath);\n        const ts = now();\n        db.prepare(\n          \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n        ).run(newPath, newEncoded, ts, project.id);\n        process.stderr.write(\n          ok(`Project moved: ${shortenPath(project.root_path, 50)}\\n`) +\n          dim(`  → ${newPath}\\n`) +\n          ok(\"Registry updated.\\n\")\n        );\n        process.stdout.write(newPath + \"\\n\");\n        return;\n      }\n\n      if (result.ambiguous) {\n        process.stderr.write(\n          warn(`Multiple directories named \"${basename(project.root_path)}\" found:\\n`)\n        );\n        for (const candidate of result.ambiguous!) {\n          process.stderr.write(dim(`  ${candidate}\\n`));\n        }\n        process.stderr.write(\n          dim(`\\n  Disambiguate with: pai projects rebind ${project.slug} <path>\\n`)\n        );\n        process.exitCode = 1;\n        return;\n      }\n\n      process.stderr.write(\n        err(\n          `Project \"${project.slug}\" root_path \"${project.root_path}\" does not exist on disk\\n` +\n          `  and no folder named \"${basename(project.root_path)}\" was found in scan dirs.\\n`\n        ) +\n        dim(`  Fix with: pai projects rebind ${project.slug} <new-path>\\n`)\n      );\n      process.exitCode = 1;\n    });\n\n  // -------------------------------------------------------------------------\n  // pai notes  — hidden power-user alias; accessible but not in main help\n  // -------------------------------------------------------------------------\n\n  const notesCmd = program\n    .command(\"notes [project-slug]\", { hidden: true })\n    .description(\"Markdown session notes — list notes, optionally filtered to a project.\")\n    .option(\"--limit <n>\", \"Maximum number of notes to show\", \"20\")\n    .option(\"--status <status>\", \"Filter by status: open | completed | compacted\")\n    .action(\n      (projectSlug: string | undefined, opts: { limit?: string; status?: string }) => {\n        cmdNotesList(getDb(), projectSlug, opts);\n      }\n    );\n\n  notesCmd\n    .command(\"list [project-slug]\")\n    .description(\"List markdown session notes (same as: pai notes)\")\n    .option(\"--limit <n>\", \"Maximum number of notes to show\", \"20\")\n    .option(\"--status <status>\", \"Filter by status: open | completed | compacted\")\n    .action(\n      (projectSlug: string | undefined, opts: { limit?: string; status?: string }) => {\n        cmdNotesList(getDb(), projectSlug, opts);\n      }\n    );\n\n  // -------------------------------------------------------------------------\n  // pai find <query>  — hidden power-user alias for history search\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"find <query>\", { hidden: true })\n    .description(\"Search prompt history for matching sessions.\")\n    .option(\"-n, --n <count>\", \"Maximum number of sessions to show\", \"20\")\n    .option(\"--json\", \"Output as JSON array\")\n    .action(async (query: string, opts: { n?: string; json?: boolean }) => {\n      await cmdFind(query, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // pai shell-init  — emit shell function for eval \"$(pai shell-init)\"\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"shell-init\")\n    .description('Emit shell integration code. Add to ~/.zshrc: eval \"$(pai shell-init)\"')\n    .action(() => {\n      process.stdout.write(\n        `# PAI shell integration — generated by: pai shell-init\npai() {\n  if [[ \"$1\" == \"cd\" ]]; then\n    local dir=$(command pai cd \"$2\" 2>/dev/null)\n    if [[ -n \"$dir\" && -d \"$dir\" ]]; then\n      builtin cd \"$dir\"\n      echo \"-> $dir\"\n    else\n      echo \"Project not found: $2\" >&2\n      return 1\n    fi\n  elif [[ \"$1\" == \"projects\" && \"$2\" == \"cd\" ]]; then\n    local dir=$(command pai projects cd \"$3\" 2>/dev/null)\n    if [[ -n \"$dir\" && -d \"$dir\" ]]; then\n      builtin cd \"$dir\"\n      echo \"-> $dir\"\n    else\n      echo \"Project not found: $3\" >&2\n      return 1\n    fi\n  elif [[ $# -eq 0 ]]; then\n    # Bare \\`pai\\` → interactive picker. fzf draws on /dev/tty; the picker writes\n    # a chosen directory to PAI_PICK_OUT when you press Ctrl-G (cd only), which we\n    # then cd into here (a child process can't change this shell's cwd itself).\n    local __pai_f\n    __pai_f=$(mktemp -t pai-pick 2>/dev/null) || { command pai; return $?; }\n    PAI_PICK_OUT=\"$__pai_f\" command pai\n    local __pai_rc=$?\n    local __pai_dir=\"\"\n    [[ -s \"$__pai_f\" ]] && __pai_dir=$(cat \"$__pai_f\")\n    command rm -f \"$__pai_f\"\n    if [[ -n \"$__pai_dir\" && -d \"$__pai_dir\" ]]; then\n      builtin cd \"$__pai_dir\"\n      echo \"-> $__pai_dir\"\n    fi\n    return $__pai_rc\n  else\n    command pai \"$@\"\n  fi\n}\n\n# Print the working directory after an interactive Claude Code session exits.\n# A SessionEnd hook can't do this reliably: Claude Code does not fire SessionEnd\n# on /exit (anthropics/claude-code#17885) and may reap the hook mid-run (#41577).\n# Running it from the shell, after \\`claude\\` returns, sidesteps both.\nclaude() {\n  local __pai_skip=0 __pai_arg\n  for __pai_arg in \"$@\"; do\n    case \"$__pai_arg\" in\n      -p|--print) __pai_skip=1 ;;\n    esac\n  done\n  command claude \"$@\"\n  local __pai_rc=$?\n  if [[ -t 1 && $__pai_skip -eq 0 ]]; then\n    printf '\\\\n\\\\033[2m📂 Working directory:\\\\033[0m %s\\\\n\\\\033[2m   cd \"%s\"\\\\033[0m\\\\n' \"$PWD\" \"$PWD\"\n  fi\n  return $__pai_rc\n}\n`\n      );\n    });\n\n  // -------------------------------------------------------------------------\n  // pai [query] [pick]  — DEFAULT COMMAND (must be registered LAST)\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"query [query] [pick]\", { isDefault: true, hidden: true })\n    .description(\n      \"Find and launch a session by topic, name, or UUID.\\n\" +\n        \"No arg → deduped session listing\\n\" +\n        \"Name   → switch live tab, or resume, or start fresh\\n\" +\n        \"UUID   → direct resume via filesystem scan\\n\" +\n        \"Topic  → history search → candidate list → pick #\"\n    )\n    .option(\"-y, --auto\", \"Auto-pick #1 without prompting\")\n    .option(\"--dry-run\", \"Print what would happen without launching\")\n    .option(\"-n, --n <count>\", \"Max candidates for history search\", \"20\")\n    .option(\"--all\", \"Show all entries including cold / zero-session / archived projects\")\n    .option(\"--list\", \"Skip the interactive picker; print the static session listing\")\n    .action(async (query: string | undefined, pick: string | undefined, opts: { auto?: boolean; dryRun?: boolean; n?: string; all?: boolean; list?: boolean }) => {\n      // No query → interactive fzf picker (projects + sessions, go where you pick).\n      // `--list` (or a non-TTY pipe, handled inside cmdPick) falls back to the\n      // static listing. Any query still goes through the name/UUID/topic resolver.\n      if (query === undefined && !opts.list) {\n        await cmdPick(getDb(), { all: opts.all, dryRun: opts.dryRun });\n        return;\n      }\n      const pickN = pick !== undefined ? parseInt(pick, 10) : undefined;\n      await cmdMain(getDb(), query, pickN, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // Error handling\n  // -------------------------------------------------------------------------\n\n  program.configureOutput({\n    writeErr: (str) => process.stderr.write(err(str)),\n  });\n\n  program.exitOverride((error) => {\n    if (error.code === \"commander.helpDisplayed\" || error.code === \"commander.version\") {\n      process.exit(0);\n    }\n    if (\n      error.code === \"commander.missingArgument\" ||\n      error.code === \"commander.unknownOption\" ||\n      error.code === \"commander.unknownCommand\"\n    ) {\n      process.exit(1);\n    }\n    console.error(err(error.message));\n    process.exit(1);\n  });\n\n  return 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+{"version":3,"file":"program.mjs","names":[],"sources":["../../src/cli/program.ts"],"sourcesContent":["/**\n * PAI CLI — Commander program builder.\n *\n * Constructs the full `pai` command tree WITHOUT parsing argv. This separation\n * lets the documentation generator (scripts/build-docs.mjs) import and introspect\n * the live program object — the single source of truth for `--help`, the\n * generated man pages, and `pai help <area>`.\n *\n * The thin entry point (cli/index.ts) imports buildProgram() and calls parse().\n */\n\nimport { Command } from \"commander\";\nimport { readFileSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { openRegistry } from \"../registry/db.js\";\nimport type { Database } from \"better-sqlite3\";\nimport { registerProjectsCommands } from \"./commands/project/projects-index.js\";\nimport { findMovedPath } from \"./commands/project/commands.js\";\nimport { existsSync } from \"node:fs\";\nimport { basename } from \"node:path\";\nimport { registerRegistryCommands } from \"./commands/registry.js\";\nimport { registerMemoryCommands } from \"./commands/memory.js\";\nimport { registerIdentityCommands } from \"./commands/identity.js\";\nimport { registerMcpCommands } from \"./commands/mcp.js\";\nimport { registerDaemonCommands } from \"./commands/daemon.js\";\nimport { registerBackupCommands } from \"./commands/backup.js\";\nimport { registerRestoreCommands } from \"./commands/restore.js\";\nimport { registerSetupCommand } from \"./commands/setup.js\";\nimport { registerObsidianCommands } from \"./commands/obsidian.js\";\nimport { registerZettelCommands } from \"./commands/zettel.js\";\nimport { registerObservationCommands } from \"./commands/observation.js\";\nimport { registerSkillCommands } from \"./commands/skill.js\";\nimport { registerUpdateCommand } from \"./commands/update.js\";\nimport { registerNotifyCommands } from \"./commands/notify.js\";\nimport { registerTaskCommands } from \"./commands/task.js\";\nimport { registerTopicCommands } from \"./commands/topic.js\";\nimport { registerKgCommands } from \"./commands/kg.js\";\nimport { registerDbCommands } from \"./commands/db.js\";\nimport { registerHelpCommand } from \"./commands/help.js\";\nimport { registerSessionCommands } from \"./commands/session/index.js\";\nimport { registerSessionCleanupCommand } from \"./commands/session-cleanup/index.js\";\nimport { err, warn, ok, dim, shortenPath, encodeDir, now } from \"./utils.js\";\nimport { cmdPause } from \"./commands/session/pause.js\";\nimport { cmdEnd } from \"./commands/session/end.js\";\nimport { cmdGoto } from \"./commands/session/goto.js\";\nimport { cmdPauseAll } from \"./commands/session/pause-all.js\";\nimport { cmdClearNames } from \"./commands/session/clear-names.js\";\nimport { cmdList as cmdNotesList } from \"./commands/session/commands.js\";\nimport { resolveIdentifier } from \"./commands/project/helpers.js\";\nimport { cmdFind } from \"./commands/find.js\";\nimport { cmdMain } from \"./commands/main-resolver.js\";\nimport { cmdPick } from \"./commands/pick.js\";\n\n// ---------------------------------------------------------------------------\n// Version resolution\n// ---------------------------------------------------------------------------\n\nfunction getVersion(): string {\n  try {\n    const __dirname = dirname(fileURLToPath(import.meta.url));\n    const pkgPath = join(__dirname, \"../../package.json\");\n    const pkg = JSON.parse(readFileSync(pkgPath, \"utf8\")) as { version?: string };\n    return pkg.version ?? \"0.0.0\";\n  } catch {\n    return \"0.0.0\";\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Lazy database singleton\n// ---------------------------------------------------------------------------\n\nlet _db: Database | null = null;\n\nfunction getDb(): Database {\n  if (!_db) {\n    try {\n      _db = openRegistry();\n    } catch (e) {\n      console.error(err(`Failed to open PAI registry: ${e}`));\n      process.exit(1);\n    }\n  }\n  return _db;\n}\n\n// ---------------------------------------------------------------------------\n// Program builder\n// ---------------------------------------------------------------------------\n\n/**\n * Build and return the fully configured `pai` Commander program.\n * Does NOT call parse — the caller (cli/index.ts) does that.\n */\nexport function buildProgram(): Command {\n  const program = new Command();\n\n  program\n    .name(\"pai\")\n    .description(\"PAI Knowledge OS — Personal AI Infrastructure CLI\")\n    .version(getVersion(), \"-V, --version\", \"Print version and exit\")\n    .addHelpText(\n      \"after\",\n      `\nDaily commands:\n  pai                     Show your work: live tabs + recent sessions + recent projects\n  pai <name>              Switch / resume / fresh — universal\n  pai pause [all]         Pause current (or all live) sessions\n  pai end                 Finalize current session\n\nSubcommands (rarely needed):\n  pai projects ...        Project registry management (cd, rebind, info, ...)\n  pai registry ...        Registry maintenance (scan, ...)\n  pai memory ...          Memory engine (index, search, ...)\n  pai shell-init          Shell integration (eval \"$(pai shell-init)\")\n\nRecovery:\n  pai clear-names         Wipe corrupt iTerm tab-name store\n\nExamples:\n  pai aibroker            Switch to the live AIBroker tab in iTerm\n  pai mdf                 Find sessions where you worked on MDF\n  pai 81c5c3dc            Resume session by UUID prefix\n  pai --all               Show everything including cold and zero-session projects`\n    );\n\n  // -------------------------------------------------------------------------\n  // pai projects  (canonical plural namespace)\n  // -------------------------------------------------------------------------\n\n  const projectsCmd = program\n    .command(\"projects\")\n    .description(\"Manage registered projects (list, cd, add, info, ...)\");\n\n  registerProjectsCommands(projectsCmd, getDb);\n\n  // Singular alias: `pai project` → `pai projects`\n  const projectCmd = program\n    .command(\"project\")\n    .description(\"Alias for `pai projects`\");\n\n  registerProjectsCommands(projectCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai sessions  (alias for the unified `pai` listing)\n  // -------------------------------------------------------------------------\n\n  // -------------------------------------------------------------------------\n  // pai session <subcommand>\n  //\n  // These were written, exported and never wired: neither\n  // registerSessionCommands nor registerSessionCleanupCommand was called from\n  // anywhere, so every `pai session <x>` fell through to the default `query`\n  // resolver and was interpreted as a prompt-history search.\n  //\n  // That is why session-stop.sh has been a near no-op — all four of its calls\n  // (`session cleanup --execute`, `session checkpoint`, `session slug --apply`,\n  // `session handover`) failed silently behind `2>/dev/null || true`.\n  // -------------------------------------------------------------------------\n\n  const sessionCmd = program\n    .command(\"session\")\n    .description(\n      \"Session management: list, info, checkpoint, handover, cleanup, slug, tag, route.\\n\" +\n        \"Short forms: `pai pause`, `pai end`, `pai resume <name>`.\"\n    );\n\n  registerSessionCommands(sessionCmd, getDb);\n  registerSessionCleanupCommand(sessionCmd, getDb);\n\n  program\n    .command(\"sessions\")\n    .description(\"Alias for `pai` — show the unified deduped listing.\")\n    .option(\"--all\", \"Show all entries including cold / zero-session / archived projects\")\n    .option(\"-n, --n <count>\", \"Max candidates for history search\", \"20\")\n    .action(async (opts: { all?: boolean; n?: string }) => {\n      await cmdMain(getDb(), undefined, undefined, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // pai registry\n  // -------------------------------------------------------------------------\n\n  const registryCmd = program\n    .command(\"registry\")\n    .description(\"Registry maintenance: scan, migrate, stats, rebuild\");\n\n  registerRegistryCommands(registryCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai memory\n  // -------------------------------------------------------------------------\n\n  const memoryCmd = program\n    .command(\"memory\")\n    .description(\"Memory engine: index, search, and status\");\n\n  registerMemoryCommands(memoryCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai identity\n  // -------------------------------------------------------------------------\n\n  const identityCmd = program\n    .command(\"identity\")\n    .description(\"Declare who you are: self addresses and where mail is delivered\");\n\n  registerIdentityCommands(identityCmd);\n\n  // -------------------------------------------------------------------------\n  // pai mcp\n  // -------------------------------------------------------------------------\n\n  const mcpCmd = program\n    .command(\"mcp\")\n    .description(\"MCP server management: install and status\");\n\n  registerMcpCommands(mcpCmd);\n\n  // -------------------------------------------------------------------------\n  // pai daemon\n  // -------------------------------------------------------------------------\n\n  const daemonCmd = program\n    .command(\"daemon\")\n    .description(\"PAI daemon management: serve, status, restart, install, uninstall, logs\");\n\n  registerDaemonCommands(daemonCmd);\n\n  // -------------------------------------------------------------------------\n  // pai backup / pai restore\n  // -------------------------------------------------------------------------\n\n  registerBackupCommands(program);\n  registerRestoreCommands(program);\n\n  // -------------------------------------------------------------------------\n  // pai setup / pai update\n  // -------------------------------------------------------------------------\n\n  registerSetupCommand(program);\n  registerUpdateCommand(program);\n\n  // -------------------------------------------------------------------------\n  // pai notify\n  // -------------------------------------------------------------------------\n\n  const notifyCmd = program\n    .command(\"notify\")\n    .description(\"Notification config: status, get, set, test, send\");\n\n  registerNotifyCommands(notifyCmd);\n\n  // -------------------------------------------------------------------------\n  // pai task\n  // -------------------------------------------------------------------------\n\n  const taskCmd = program\n    .command(\"task\")\n    .alias(\"tasks\")\n    .description(\"Task bus: list, add, dispatch, and complete cross-session work\");\n\n  registerTaskCommands(taskCmd);\n\n  // -------------------------------------------------------------------------\n  // pai topic\n  // -------------------------------------------------------------------------\n\n  const topicCmd = program\n    .command(\"topic\")\n    .description(\"Topic shift detection: check whether context has drifted to a different project\");\n\n  registerTopicCommands(topicCmd);\n\n  // -------------------------------------------------------------------------\n  // pai kg\n  // -------------------------------------------------------------------------\n\n  const kgCmd = program\n    .command(\"kg\")\n    .description(\"Temporal knowledge graph: backfill, query, list, stats\");\n\n  registerKgCommands(kgCmd);\n\n  // -------------------------------------------------------------------------\n  // pai db\n  // -------------------------------------------------------------------------\n\n  const dbCmd = program\n    .command(\"db\")\n    .description(\"Database inspection: query, tables, schema (sqlite or postgres)\");\n\n  registerDbCommands(dbCmd);\n\n  // -------------------------------------------------------------------------\n  // pai obsidian\n  // -------------------------------------------------------------------------\n\n  const obsidianCmd = program\n    .command(\"obsidian\")\n    .description(\"Obsidian vault: sync project notes, view status, open in Obsidian\");\n\n  registerObsidianCommands(obsidianCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai zettel\n  // -------------------------------------------------------------------------\n\n  const zettelCmd = program\n    .command(\"zettel\")\n    .description(\"Zettelkasten intelligence: explore, surprise, converse, themes, health, suggest\");\n\n  registerZettelCommands(zettelCmd, getDb);\n\n  // -------------------------------------------------------------------------\n  // pai observation\n  // -------------------------------------------------------------------------\n\n  const observationCmd = program\n    .command(\"observation\")\n    .description(\"Observation capture: list, search, and stats\");\n\n  registerObservationCommands(observationCmd);\n\n  // -------------------------------------------------------------------------\n  // pai skill\n  // -------------------------------------------------------------------------\n\n  const skillCmd = program\n    .command(\"skill\")\n    .description(\"Skill telemetry and (future) discovery for the self-educating skill system\");\n\n  registerSkillCommands(skillCmd);\n\n  // -------------------------------------------------------------------------\n  // pai help [area]  — rich man-page viewer for the generated docs\n  // -------------------------------------------------------------------------\n\n  registerHelpCommand(program);\n\n  // -------------------------------------------------------------------------\n  // DAILY VERBS — top-level\n  // -------------------------------------------------------------------------\n\n  // pai pause [all] [--dry-run] [--exit] [--wait <ms>]\n  program\n    .command(\"pause [target]\")\n    .description(\n      \"Save state and display safe-exit instructions for the current session.\\n\" +\n        \"Writes a ## Continue checkpoint to the project's TODO.md.\\n\" +\n        \"Use `pai pause all` to pause every live session via AIBroker.\"\n    )\n    .option(\"--dry-run\", \"Preview changes without writing them\")\n    .option(\n      \"--body-file <path>\",\n      \"File holding the checkpoint markdown to persist ('-' reads stdin). Required unless --no-body.\"\n    )\n    .option(\n      \"--session-id <uuid>\",\n      \"Claude Code session UUID — recorded as the `claude --resume` handle\"\n    )\n    .option(\n      \"--no-body\",\n      \"Deliberately write a metadata-only checkpoint (no content)\"\n    )\n    .option(\"--exit\", \"(pause all only) Also send /exit to each session after pausing\")\n    .option(\n      \"--wait <ms>\",\n      \"(pause all only) Max milliseconds to wait for a session to finish its\\n\" +\n        \"checkpoint before /exit. Not a fixed delay — sessions are exited as soon\\n\" +\n        \"as they return to the prompt, and any still busy at the deadline are left\\n\" +\n        \"open rather than killed mid-write. (default: 180000)\",\n      \"180000\"\n    )\n    .action(async (target: string | undefined, opts: { dryRun?: boolean; exit?: boolean; wait?: string; bodyFile?: string; sessionId?: string; body?: boolean }) => {\n      if (target === \"all\") {\n        await cmdPauseAll({\n          exit: opts.exit,\n          dryRun: opts.dryRun,\n          wait: opts.wait !== undefined ? parseInt(opts.wait, 10) : undefined,\n        });\n      } else {\n        if (target !== undefined) {\n          console.error(err(`Unknown target: ${target}. Did you mean 'pai pause all'?`));\n          process.exitCode = 1;\n          return;\n        }\n        // Commander maps `--no-body` to opts.body === false.\n        cmdPause(getDb(), {\n          dryRun: opts.dryRun,\n          bodyFile: opts.bodyFile,\n          sessionId: opts.sessionId,\n          noBody: opts.body === false,\n        });\n      }\n    });\n\n  // pai end [--body-file <path>] [--session-id <uuid>] [--no-body] [--dry-run]\n  program\n    .command(\"end\")\n    .description(\n      \"Finalize a session: save state, mark note Completed, display safe-exit instructions.\"\n    )\n    .option(\"--dry-run\", \"Preview all changes without writing them\")\n    .option(\n      \"--body-file <path>\",\n      \"File holding the checkpoint markdown to persist ('-' reads stdin). Required unless --no-body.\"\n    )\n    .option(\n      \"--session-id <uuid>\",\n      \"Claude Code session UUID — recorded as the `claude --resume` handle\"\n    )\n    .option(\n      \"--no-body\",\n      \"Deliberately write a metadata-only checkpoint (no content)\"\n    )\n    .action((opts: { dryRun?: boolean; bodyFile?: string; sessionId?: string; body?: boolean }) => {\n      cmdEnd(getDb(), {\n        dryRun: opts.dryRun,\n        bodyFile: opts.bodyFile,\n        sessionId: opts.sessionId,\n        noBody: opts.body === false,\n      });\n    });\n\n  // pai clear-names [--dry-run]  — recovery: wipe corrupt iTerm/JSON name store\n  program\n    .command(\"clear-names\")\n    .description(\n      \"Recovery: wipe corrupted iTerm2 session name state.\\n\" +\n        \"Clears ~/.aibroker/session-names.json AND user.paiName from all live iTerm2 sessions.\\n\" +\n        \"After running this, use /Name to re-label each tab.\"\n    )\n    .option(\"--dry-run\", \"Preview what would be cleared without making changes\")\n    .action(async (opts: { dryRun?: boolean }) => {\n      await cmdClearNames(opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // HIDDEN COMPAT ALIASES\n  // -------------------------------------------------------------------------\n\n  // pai resume <name> [--dry-run]  — hidden; prefer `pai <name>`\n  program\n    .command(\"resume <name>\", { hidden: true })\n    .description(\"Go to a session by name or UUID (prefer: pai <name>)\")\n    .option(\"--dry-run\", \"Print the exact argv and cwd, then exit without launching\")\n    .action((name: string, opts: { dryRun?: boolean }) => {\n      cmdGoto(getDb(), name, { dryRun: opts.dryRun });\n    });\n\n  // pai cd <identifier>  — hidden; shell wrapper uses this\n  program\n    .command(\"cd <identifier>\", { hidden: true })\n    .description(\"cd to a project directory (shell wrapper handles the actual cd)\")\n    .action((identifier: string) => {\n      const db = getDb();\n      const project = resolveIdentifier(db, identifier);\n      if (!project) {\n        console.error(`Project not found: ${identifier}`);\n        process.exit(1);\n        return;\n      }\n\n      if (existsSync(project.root_path)) {\n        process.stdout.write(project.root_path + \"\\n\");\n        return;\n      }\n\n      process.stderr.write(\n        warn(`Path not found: ${project.root_path}\\n`) +\n        dim(\"  Searching for moved location...\\n\")\n      );\n\n      const result = findMovedPath(project.root_path);\n\n      if (result.found) {\n        const newPath = result.found;\n        const newEncoded = encodeDir(newPath);\n        const ts = now();\n        db.prepare(\n          \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n        ).run(newPath, newEncoded, ts, project.id);\n        process.stderr.write(\n          ok(`Project moved: ${shortenPath(project.root_path, 50)}\\n`) +\n          dim(`  → ${newPath}\\n`) +\n          ok(\"Registry updated.\\n\")\n        );\n        process.stdout.write(newPath + \"\\n\");\n        return;\n      }\n\n      if (result.ambiguous) {\n        process.stderr.write(\n          warn(`Multiple directories named \"${basename(project.root_path)}\" found:\\n`)\n        );\n        for (const candidate of result.ambiguous!) {\n          process.stderr.write(dim(`  ${candidate}\\n`));\n        }\n        process.stderr.write(\n          dim(`\\n  Disambiguate with: pai projects rebind ${project.slug} <path>\\n`)\n        );\n        process.exitCode = 1;\n        return;\n      }\n\n      process.stderr.write(\n        err(\n          `Project \"${project.slug}\" root_path \"${project.root_path}\" does not exist on disk\\n` +\n          `  and no folder named \"${basename(project.root_path)}\" was found in scan dirs.\\n`\n        ) +\n        dim(`  Fix with: pai projects rebind ${project.slug} <new-path>\\n`)\n      );\n      process.exitCode = 1;\n    });\n\n  // -------------------------------------------------------------------------\n  // pai notes  — hidden power-user alias; accessible but not in main help\n  // -------------------------------------------------------------------------\n\n  const notesCmd = program\n    .command(\"notes [project-slug]\", { hidden: true })\n    .description(\"Markdown session notes — list notes, optionally filtered to a project.\")\n    .option(\"--limit <n>\", \"Maximum number of notes to show\", \"20\")\n    .option(\"--status <status>\", \"Filter by status: open | completed | compacted\")\n    .action(\n      (projectSlug: string | undefined, opts: { limit?: string; status?: string }) => {\n        cmdNotesList(getDb(), projectSlug, opts);\n      }\n    );\n\n  notesCmd\n    .command(\"list [project-slug]\")\n    .description(\"List markdown session notes (same as: pai notes)\")\n    .option(\"--limit <n>\", \"Maximum number of notes to show\", \"20\")\n    .option(\"--status <status>\", \"Filter by status: open | completed | compacted\")\n    .action(\n      (projectSlug: string | undefined, opts: { limit?: string; status?: string }) => {\n        cmdNotesList(getDb(), projectSlug, opts);\n      }\n    );\n\n  // -------------------------------------------------------------------------\n  // pai find <query>  — hidden power-user alias for history search\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"find <query>\", { hidden: true })\n    .description(\"Search prompt history for matching sessions.\")\n    .option(\"-n, --n <count>\", \"Maximum number of sessions to show\", \"20\")\n    .option(\"--json\", \"Output as JSON array\")\n    .action(async (query: string, opts: { n?: string; json?: boolean }) => {\n      await cmdFind(query, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // pai shell-init  — emit shell function for eval \"$(pai shell-init)\"\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"shell-init\")\n    .description('Emit shell integration code. Add to ~/.zshrc: eval \"$(pai shell-init)\"')\n    .action(() => {\n      process.stdout.write(\n        `# PAI shell integration — generated by: pai shell-init\npai() {\n  if [[ \"$1\" == \"cd\" ]]; then\n    local dir=$(command pai cd \"$2\" 2>/dev/null)\n    if [[ -n \"$dir\" && -d \"$dir\" ]]; then\n      builtin cd \"$dir\"\n      echo \"-> $dir\"\n    else\n      echo \"Project not found: $2\" >&2\n      return 1\n    fi\n  elif [[ \"$1\" == \"projects\" && \"$2\" == \"cd\" ]]; then\n    local dir=$(command pai projects cd \"$3\" 2>/dev/null)\n    if [[ -n \"$dir\" && -d \"$dir\" ]]; then\n      builtin cd \"$dir\"\n      echo \"-> $dir\"\n    else\n      echo \"Project not found: $3\" >&2\n      return 1\n    fi\n  elif [[ $# -eq 0 ]]; then\n    # Bare \\`pai\\` → interactive picker. fzf draws on /dev/tty; the picker writes\n    # a chosen directory to PAI_PICK_OUT when you press Ctrl-G (cd only), which we\n    # then cd into here (a child process can't change this shell's cwd itself).\n    local __pai_f\n    __pai_f=$(mktemp -t pai-pick 2>/dev/null) || { command pai; return $?; }\n    PAI_PICK_OUT=\"$__pai_f\" command pai\n    local __pai_rc=$?\n    local __pai_dir=\"\"\n    [[ -s \"$__pai_f\" ]] && __pai_dir=$(cat \"$__pai_f\")\n    command rm -f \"$__pai_f\"\n    if [[ -n \"$__pai_dir\" && -d \"$__pai_dir\" ]]; then\n      builtin cd \"$__pai_dir\"\n      echo \"-> $__pai_dir\"\n    fi\n    return $__pai_rc\n  else\n    command pai \"$@\"\n  fi\n}\n\n# Print the working directory after an interactive Claude Code session exits.\n# A SessionEnd hook can't do this reliably: Claude Code does not fire SessionEnd\n# on /exit (anthropics/claude-code#17885) and may reap the hook mid-run (#41577).\n# Running it from the shell, after \\`claude\\` returns, sidesteps both.\nclaude() {\n  local __pai_skip=0 __pai_arg\n  for __pai_arg in \"$@\"; do\n    case \"$__pai_arg\" in\n      -p|--print) __pai_skip=1 ;;\n    esac\n  done\n  command claude \"$@\"\n  local __pai_rc=$?\n  if [[ -t 1 && $__pai_skip -eq 0 ]]; then\n    printf '\\\\n\\\\033[2m📂 Working directory:\\\\033[0m %s\\\\n\\\\033[2m   cd \"%s\"\\\\033[0m\\\\n' \"$PWD\" \"$PWD\"\n  fi\n  return $__pai_rc\n}\n`\n      );\n    });\n\n  // -------------------------------------------------------------------------\n  // pai [query] [pick]  — DEFAULT COMMAND (must be registered LAST)\n  // -------------------------------------------------------------------------\n\n  program\n    .command(\"query [query] [pick]\", { isDefault: true, hidden: true })\n    .description(\n      \"Find and launch a session by topic, name, or UUID.\\n\" +\n        \"No arg → deduped session listing\\n\" +\n        \"Name   → switch live tab, or resume, or start fresh\\n\" +\n        \"UUID   → direct resume via filesystem scan\\n\" +\n        \"Topic  → history search → candidate list → pick #\"\n    )\n    .option(\"-y, --auto\", \"Auto-pick #1 without prompting\")\n    .option(\"--dry-run\", \"Print what would happen without launching\")\n    .option(\"-n, --n <count>\", \"Max candidates for history search\", \"20\")\n    .option(\"--all\", \"Show all entries including cold / zero-session / archived projects\")\n    .option(\"--list\", \"Skip the interactive picker; print the static session listing\")\n    .action(async (query: string | undefined, pick: string | undefined, opts: { auto?: boolean; dryRun?: boolean; n?: string; all?: boolean; list?: boolean }) => {\n      // No query → interactive fzf picker (projects + sessions, go where you pick).\n      // `--list` (or a non-TTY pipe, handled inside cmdPick) falls back to the\n      // static listing. Any query still goes through the name/UUID/topic resolver.\n      if (query === undefined && !opts.list) {\n        await cmdPick(getDb(), { all: opts.all, dryRun: opts.dryRun });\n        return;\n      }\n      const pickN = pick !== undefined ? parseInt(pick, 10) : undefined;\n      await cmdMain(getDb(), query, pickN, opts);\n    });\n\n  // -------------------------------------------------------------------------\n  // Error handling\n  // -------------------------------------------------------------------------\n\n  program.configureOutput({\n    writeErr: (str) => process.stderr.write(err(str)),\n  });\n\n  program.exitOverride((error) => {\n    if (error.code === \"commander.helpDisplayed\" || error.code === \"commander.version\") {\n      process.exit(0);\n    }\n    if (\n      error.code === \"commander.missingArgument\" ||\n      error.code === \"commander.unknownOption\" ||\n      error.code === \"commander.unknownCommand\"\n    ) {\n      process.exit(1);\n    }\n    console.error(err(error.message));\n    process.exit(1);\n  });\n\n  return 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package/dist/clusters-CRXU2T6Z.mjs

@@ -0,0 +1,201 @@
+import { t as STOP_WORDS } from "./stop-words-BaMEGVeY.mjs";
+
+//#region src/graph/clusters.ts
+/**
+* Query pai_observations (Postgres) for observation types associated with
+* the given file paths. Returns a map from vault_path → type counts.
+*
+* Falls back to an empty map when the pool is not available or the query fails.
+*/
+async function fetchObservationTypes(pool, filePaths, projectId) {
+	if (filePaths.length === 0) return /* @__PURE__ */ new Map();
+	try {
+		const params = [...filePaths];
+		let projectFilter = "";
+		if (projectId !== void 0) {
+			params.push(projectId);
+			projectFilter = `AND project_id = $${params.length}`;
+		}
+		const result = await pool.query(`SELECT unnested_path AS path, type, COUNT(*) AS cnt
+       FROM pai_observations,
+            LATERAL unnest(files_modified || files_read) AS unnested_path
+       WHERE unnested_path = ANY($1::text[])
+         ${projectFilter}
+       GROUP BY unnested_path, type`, [filePaths, ...params.slice(filePaths.length)]);
+		const byPath = /* @__PURE__ */ new Map();
+		for (const row of result.rows) {
+			const existing = byPath.get(row.path) ?? {};
+			existing[row.type] = (existing[row.type] ?? 0) + parseInt(row.cnt, 10);
+			byPath.set(row.path, existing);
+		}
+		return byPath;
+	} catch {
+		return /* @__PURE__ */ new Map();
+	}
+}
+/**
+* Aggregate per-path observation type counts into cluster-level counts,
+* then pick the dominant type.
+*/
+function aggregateObservationTypes(paths, byPath) {
+	const counts = {};
+	for (const path of paths) {
+		const pathCounts = byPath.get(path);
+		if (!pathCounts) continue;
+		for (const [type, n] of Object.entries(pathCounts)) counts[type] = (counts[type] ?? 0) + n;
+	}
+	let dominant = "unknown";
+	let maxCount = 0;
+	for (const [type, n] of Object.entries(counts)) if (n > maxCount) {
+		maxCount = n;
+		dominant = type;
+	}
+	return {
+		dominant,
+		counts
+	};
+}
+const SKIP_PREFIXES = [
+	"Attachments/",
+	"🗓️ Daily Notes/",
+	"Copilot/copilot-conversations/",
+	"Z - Zettelkasten/Tweets/"
+];
+/**
+* Cluster vault notes by wikilink connectivity when embeddings aren't available.
+* Uses BFS to find connected components in the link graph, then picks the
+* largest components as clusters. Labels are derived from the most common
+* title words in each component.
+*/
+async function clusterByLinks(backend, lookbackDays, minSize, maxClusters) {
+	const now = Date.now();
+	const from = now - lookbackDays * 864e5;
+	const recentNotes = (await backend.getRecentVaultFiles(from)).filter((f) => f.vaultPath.endsWith(".md"));
+	const noteMap = /* @__PURE__ */ new Map();
+	for (const n of recentNotes) noteMap.set(n.vaultPath, {
+		title: n.title,
+		indexed_at: n.indexedAt
+	});
+	const adj = /* @__PURE__ */ new Map();
+	for (const path of noteMap.keys()) if (!adj.has(path)) adj.set(path, /* @__PURE__ */ new Set());
+	const linkGraph = await backend.getVaultLinkGraph();
+	for (const { source_path, target_path } of linkGraph) if (noteMap.has(source_path) && noteMap.has(target_path)) {
+		adj.get(source_path).add(target_path);
+		adj.get(target_path).add(source_path);
+	}
+	const degrees = [...adj.entries()].map(([p, s]) => ({
+		path: p,
+		degree: s.size
+	}));
+	degrees.sort((a, b) => b.degree - a.degree);
+	const hubThreshold = Math.max(10, degrees[Math.floor(degrees.length * .05)]?.degree ?? 10);
+	const hubNodes = /* @__PURE__ */ new Set();
+	for (const { path, degree } of degrees) if (degree >= hubThreshold) hubNodes.add(path);
+	else break;
+	for (const hub of hubNodes) adj.delete(hub);
+	for (const [, neighbors] of adj) for (const hub of hubNodes) neighbors.delete(hub);
+	const visited = /* @__PURE__ */ new Set();
+	const components = [];
+	for (const path of noteMap.keys()) {
+		if (visited.has(path) || hubNodes.has(path)) continue;
+		if (SKIP_PREFIXES.some((p) => path.startsWith(p))) {
+			visited.add(path);
+			continue;
+		}
+		const component = [];
+		const queue = [path];
+		visited.add(path);
+		while (queue.length > 0) {
+			const current = queue.shift();
+			component.push(current);
+			const neighbors = adj.get(current);
+			if (!neighbors) continue;
+			for (const neighbor of neighbors) if (!visited.has(neighbor) && !SKIP_PREFIXES.some((p) => neighbor.startsWith(p))) {
+				visited.add(neighbor);
+				queue.push(neighbor);
+			}
+		}
+		if (component.length >= minSize) components.push(component);
+	}
+	components.sort((a, b) => b.length - a.length);
+	const topComponents = components.slice(0, maxClusters);
+	function generateLinkLabel(paths) {
+		const wordCounts = /* @__PURE__ */ new Map();
+		for (const p of paths) {
+			const title = noteMap.get(p)?.title;
+			if (!title) continue;
+			const words = title.toLowerCase().replace(/[^a-z0-9äöüàéèêëçñß\s]/g, " ").split(/\s+/).filter((w) => w.length > 2 && !STOP_WORDS.has(w));
+			for (const word of words) wordCounts.set(word, (wordCounts.get(word) ?? 0) + 1);
+		}
+		return [...wordCounts.entries()].sort((a, b) => b[1] - a[1]).slice(0, 3).map(([w]) => w).join(" / ") || "Linked Notes";
+	}
+	return {
+		themes: topComponents.map((component, idx) => {
+			const notes = component.map((p) => ({
+				path: p,
+				title: noteMap.get(p)?.title ?? null
+			}));
+			const avgRecency = component.reduce((sum, p) => sum + (noteMap.get(p)?.indexed_at ?? 0), 0) / component.length;
+			const uniqueFolders = new Set(component.map((p) => p.split("/")[0]));
+			return {
+				id: idx,
+				label: generateLinkLabel(component),
+				notes,
+				size: component.length,
+				folderDiversity: uniqueFolders.size / component.length,
+				avgRecency,
+				linkedRatio: 1,
+				suggestIndexNote: component.length >= 10
+			};
+		}),
+		totalNotesAnalyzed: recentNotes.length,
+		timeWindow: {
+			from,
+			to: now
+		}
+	};
+}
+async function handleGraphClusters(pool, backend, params) {
+	const minSize = params.min_size ?? 3;
+	const maxClusters = params.max_clusters ?? 20;
+	const lookbackDays = params.lookback_days ?? 90;
+	if (!(params.project_id ?? 0)) throw new Error("graph_clusters: project_id is required (pass the vault project's numeric ID)");
+	const themeResult = await clusterByLinks(backend, lookbackDays, minSize, maxClusters);
+	const allPaths = themeResult.themes.flatMap((t) => t.notes.map((n) => n.path));
+	const observationsByPath = pool !== null ? await fetchObservationTypes(pool, allPaths, params.project_id) : /* @__PURE__ */ new Map();
+	const fileRows = await backend.getVaultFilesByPaths(allPaths);
+	const indexedAtMap = new Map(fileRows.map((f) => [f.vaultPath, f.indexedAt]));
+	const clusters = themeResult.themes.map((theme) => {
+		const notePaths = theme.notes.map((n) => n.path);
+		const notesWithTimestamps = theme.notes.map((n) => ({
+			vault_path: n.path,
+			title: n.title ?? n.path.split("/").pop() ?? n.path,
+			indexed_at: indexedAtMap.get(n.path) ?? 0
+		}));
+		const avgRecency = theme.avgRecency;
+		const { dominant, counts } = aggregateObservationTypes(notePaths, observationsByPath);
+		return {
+			id: theme.id,
+			label: theme.label,
+			size: theme.size,
+			folder_diversity: theme.folderDiversity,
+			avg_recency: avgRecency,
+			linked_ratio: theme.linkedRatio,
+			dominant_observation_type: dominant,
+			observation_type_counts: counts,
+			suggest_index_note: theme.suggestIndexNote,
+			has_idea_note: false,
+			notes: notesWithTimestamps
+		};
+	});
+	clusters.sort((a, b) => b.size - a.size);
+	return {
+		clusters: clusters.slice(0, maxClusters),
+		total_notes_analyzed: themeResult.totalNotesAnalyzed,
+		time_window: themeResult.timeWindow
+	};
+}
+
+//#endregion
+export { handleGraphClusters };
+//# sourceMappingURL=clusters-CRXU2T6Z.mjs.map