@tarcisiopgs/lisa 1.20.2 → 1.21.1

package/dist/{chunk-EK5XS7CB.js → chunk-7OCDGYDM.js}

@@ -28,21 +28,15 @@ function getGuardrailsPath(cwd) {
   return join(getCacheDir(cwd), "guardrails.md");
 }
 function getManifestPath(cwd, issueId) {
-  if (issueId) {
-    const safe = issueId.replace(/[^a-zA-Z0-9_-]/g, "_");
-    return join(getCacheDir(cwd), `manifest-${safe}.json`);
-  }
-  return join(getCacheDir(cwd), "manifest.json");
+  const safe = issueId ? issueId.replace(/[^a-zA-Z0-9_-]/g, "_") : "default";
+  return join(cwd, ".lisa", "manifests", `${safe}.json`);
 }
 function getPrCachePath(cwd) {
   return join(getCacheDir(cwd), "pr-cache.json");
 }
 function getPlanPath(cwd, issueId) {
-  if (issueId) {
-    const safe = issueId.replace(/[^a-zA-Z0-9_-]/g, "_");
-    return join(getCacheDir(cwd), `plan-${safe}.json`);
-  }
-  return join(getCacheDir(cwd), "plan.json");
+  const safe = issueId ? issueId.replace(/[^a-zA-Z0-9_-]/g, "_") : "default";
+  return join(cwd, ".lisa", "plans", `${safe}.json`);
 }
 function getKanbanStatePath(cwd) {
   return join(getCacheDir(cwd), "kanban-state.json");

package/dist/{chunk-HDOVPYNL.js → chunk-XE35VI6S.js}

@@ -777,6 +777,9 @@ function useKanbanState(bellEnabled, initialCards = []) {
         (prev) => prev.map((c) => c.id === issueId ? { ...c, outputLog: c.outputLog + text } : c)
       );
     };
+    const onReconcileRemove = (issueId) => {
+      setCards((prev) => prev.filter((c) => c.id !== issueId));
+    };
     kanbanEmitter.on("issue:queued", onQueued);
     kanbanEmitter.on("issue:started", onStarted);
     kanbanEmitter.on("issue:done", onDone);
@@ -784,6 +787,7 @@ function useKanbanState(bellEnabled, initialCards = []) {
     kanbanEmitter.on("issue:reverted", onReverted);
     kanbanEmitter.on("issue:skipped", onSkipped);
     kanbanEmitter.on("issue:killed", onKilled);
+    kanbanEmitter.on("issue:reconcile-remove", onReconcileRemove);
     kanbanEmitter.on("provider:paused", onProviderPaused);
     kanbanEmitter.on("provider:resumed", onProviderResumed);
     kanbanEmitter.on("issue:log-file", onLogFile);
@@ -814,6 +818,7 @@ function useKanbanState(bellEnabled, initialCards = []) {
       kanbanEmitter.off("issue:reverted", onReverted);
       kanbanEmitter.off("issue:skipped", onSkipped);
       kanbanEmitter.off("issue:killed", onKilled);
+      kanbanEmitter.off("issue:reconcile-remove", onReconcileRemove);
       kanbanEmitter.off("provider:paused", onProviderPaused);
       kanbanEmitter.off("provider:resumed", onProviderResumed);
       kanbanEmitter.off("issue:log-file", onLogFile);

package/dist/{chunk-N35HZN5O.js → chunk-ZAYL7SJN.js}

@@ -1,7 +1,7 @@
 #!/usr/bin/env node
 import {
   getGuardrailsPath
-} from "./chunk-EK5XS7CB.js";
+} from "./chunk-7OCDGYDM.js";
 
 // src/session/guardrails.ts
 import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from "fs";

package/dist/{guardrails-OAO4CAIT.js → guardrails-EMOWZNS7.js}

@@ -10,8 +10,8 @@ import {
   guardrailsPath,
   migrateGuardrails,
   readGuardrails
-} from "./chunk-N35HZN5O.js";
-import "./chunk-EK5XS7CB.js";
+} from "./chunk-ZAYL7SJN.js";
+import "./chunk-7OCDGYDM.js";
 export {
   appendEntry,
   appendEntrySync,

package/dist/index.js

@@ -6,7 +6,7 @@ import {
   extractContext,
   extractErrorType,
   migrateGuardrails
-} from "./chunk-N35HZN5O.js";
+} from "./chunk-ZAYL7SJN.js";
 import {
   ensureCacheDir,
   getKanbanStatePath,
@@ -15,7 +15,7 @@ import {
   getPlanPath,
   getPrCachePath,
   rotateLogFiles
-} from "./chunk-EK5XS7CB.js";
+} from "./chunk-7OCDGYDM.js";
 import {
   appendPrAttribution,
   detectDefaultBranch,
@@ -47,7 +47,7 @@ import {
   setOutputMode,
   updateNotice,
   warn
-} from "./chunk-HDOVPYNL.js";
+} from "./chunk-XE35VI6S.js";
 import {
   notify,
   resetTitle,
@@ -406,7 +406,7 @@ import { promisify } from "util";
 var execFileAsync = promisify(execFile);
 var STUCK_MESSAGE = "\n[lisa-overseer] Provider killed: no git changes detected within the stuck threshold. Eligible for fallback.\n";
 var STALL_MESSAGE = "\n[lisa-stall] Provider killed: no output received within the stall timeout. Eligible for fallback.\n";
-var DEFAULT_OUTPUT_STALL_TIMEOUT = 120;
+var DEFAULT_OUTPUT_STALL_TIMEOUT = 300;
 function createOutputStallDetector(proc, timeoutSeconds) {
   const timeout = timeoutSeconds ?? DEFAULT_OUTPUT_STALL_TIMEOUT;
   if (timeout <= 0) {
@@ -2456,8 +2456,8 @@ var feedback = defineCommand3({
   },
   async run({ args }) {
     const { fetchPrFeedback: fetchPrFeedback2, formatPrFeedbackEntry: formatPrFeedbackEntry2 } = await import("./pr-feedback-DGHNP3E7.js");
-    const { appendRawEntrySync } = await import("./guardrails-OAO4CAIT.js");
-    const { ensureCacheDir: ensureCacheDir2 } = await import("./paths-ZRUQ4GIN.js");
+    const { appendRawEntrySync } = await import("./guardrails-EMOWZNS7.js");
+    const { ensureCacheDir: ensureCacheDir2 } = await import("./paths-JE4IML2C.js");
     const prUrl = args.pr;
     const issueId = args.issue ?? "unknown";
     const date = (/* @__PURE__ */ new Date()).toISOString().slice(0, 10);
@@ -3863,7 +3863,7 @@ import { defineCommand as defineCommand6 } from "citty";
 import pc5 from "picocolors";
 
 // src/loop/index.ts
-import { join as join18, resolve as resolve14 } from "path";
+import { join as join17, resolve as resolve14 } from "path";
 
 // src/loop/concurrent.ts
 import { resolve as resolve11 } from "path";
@@ -4281,7 +4281,7 @@ function logAttemptHistory(result) {
 
 // src/loop/worktree-session.ts
 import { appendFileSync as appendFileSync11 } from "fs";
-import { join as join16, resolve as resolve10 } from "path";
+import { resolve as resolve10 } from "path";
 import { execa as execa5 } from "execa";
 
 // src/context.ts
@@ -4988,7 +4988,7 @@ function buildWorktreePrompt(issue2, testRunner, pm, baseBranch, projectContext,
   const specWarningBlock = buildSpecWarningBlock(issue2.specWarning);
   const contextMdBlock = buildContextMdBlock(repoContextMd ?? null);
   const prBase = issue2.dependency ? issue2.dependency.branch : baseBranch;
-  const manifestLocation = manifestPath ? `\`${manifestPath}\`` : "`.lisa-manifest.json` in the **current directory**";
+  const manifestLocation = manifestPath ? `\`${manifestPath}\`` : "`.lisa/manifests/default.json` in the **current directory**";
   const prCreateBlock = buildPrCreateInstruction(platform2, prBase);
   return `You are an autonomous implementation agent. Your job is to implement an issue end-to-end: code, push, PR, and tracker update.
 Do NOT use interactive skills, ask clarifying questions, or wait for user input. You are running unattended. If the issue is too ambiguous to implement, you MUST STOP and provide a clear explanation.
@@ -5139,7 +5139,7 @@ function buildNativeWorktreePrompt(issue2, repoPath, testRunner, pm, baseBranch,
   const specWarningBlock = buildSpecWarningBlock(issue2.specWarning);
   const contextMdBlock = buildContextMdBlock(repoContextMd ?? null);
   const prBase = issue2.dependency ? issue2.dependency.branch : baseBranch;
-  const manifestLocation = manifestPath ? `\`${manifestPath}\`` : "`.lisa-manifest.json` in the **current directory**";
+  const manifestLocation = manifestPath ? `\`${manifestPath}\`` : "`.lisa/manifests/default.json` in the **current directory**";
   const prCreateBlock = buildPrCreateInstruction(platform2, prBase);
   return `You are an autonomous implementation agent. Your job is to implement an issue end-to-end: code, push, PR, and tracker update.
 Do NOT use interactive skills, ask clarifying questions, or wait for user input. You are running unattended. If the issue is too ambiguous to implement, you MUST STOP and provide a clear explanation.
@@ -5333,7 +5333,7 @@ ${readmeBlock}
 
 5. ${buildPrCreateInstruction(platform2, prBase)}
 ${trackerStep}
-7. **Write manifest**: Create ${manifestPath ? `\`${manifestPath}\`` : "`.lisa-manifest.json` in the **current directory**"} with JSON:
+7. **Write manifest**: Create ${manifestPath ? `\`${manifestPath}\`` : "`.lisa/manifests/default.json` in the **current directory**"} with JSON:
    \`\`\`json
    {"branch": "<final English branch name>", "prUrl": "<pull request URL>"}
    \`\`\`
@@ -5709,7 +5709,7 @@ function readPlanFile(filePath) {
 
 // src/loop/multi-repo-session.ts
 import { appendFileSync as appendFileSync10, unlinkSync as unlinkSync2 } from "fs";
-import { join as join15, resolve as resolve9 } from "path";
+import { resolve as resolve9 } from "path";
 async function runWorktreeMultiRepoSession(config2, issue2, logFile, session, models) {
   const workspace = resolve9(config2.workspace);
   const planPath = getPlanPath(workspace, issue2.id);
@@ -5874,7 +5874,7 @@ async function runMultiRepoStep(config2, issue2, step, previousResults, logFile,
   const lifecycleMode = config2.lifecycle?.mode ?? "skip";
   resolveInfraStatus(lifecycleMode, { success: lifecycleSuccess });
   const workspace = resolve9(config2.workspace);
-  const manifestPath = join15(worktreePath, ".lisa-manifest.json");
+  const manifestPath = getManifestPath(worktreePath, issue2.id);
   const prompt = buildScopedImplementPrompt(
     issue2,
     step,
@@ -6174,7 +6174,7 @@ async function runManualWorktreeSession(config2, issue2, logFile, session, model
     lifecycleEnv = started.env;
   }
   const workspace = resolve10(config2.workspace);
-  const manifestPath = join16(worktreePath, ".lisa-manifest.json");
+  const manifestPath = getManifestPath(worktreePath, issue2.id);
   const prompt = buildImplementPrompt(
     issue2,
     config2,
@@ -6532,10 +6532,10 @@ async function getChangedFiles(repoPath, baseBranch, dependencyBranch) {
 
 // src/loop/branch-session.ts
 import { appendFileSync as appendFileSync12, unlinkSync as unlinkSync3 } from "fs";
-import { join as join17, resolve as resolve12 } from "path";
+import { resolve as resolve12 } from "path";
 async function runBranchSession(config2, issue2, logFile, session, models) {
   const workspace = resolve12(config2.workspace);
-  const manifestPath = join17(workspace, ".lisa-manifest.json");
+  const manifestPath = getManifestPath(workspace, issue2.id);
   try {
     unlinkSync3(manifestPath);
   } catch {
@@ -7029,7 +7029,7 @@ async function runLoop(config2, opts) {
   migrateGuardrails(workspace);
   rotateLogFiles(workspace);
   if (!opts.dryRun) {
-    const contextLogFile = join18(workspace, ".lisa", "context-generation.log");
+    const contextLogFile = join17(workspace, ".lisa", "context-generation.log");
     ensureWorkspaceContext(config2, models, workspace, contextLogFile).catch((err) => {
       warn(
         `Background context generation failed: ${err instanceof Error ? err.message : String(err)}`
@@ -7045,6 +7045,17 @@ async function runLoop(config2, opts) {
   if (kanbanEmitter.listenerCount("issue:queued") > 0) {
     try {
       const allIssues = await source.listIssues(config2.source_config);
+      const activeIssueIds = new Set(allIssues.map((i) => i.id));
+      if (opts.initialCards) {
+        for (const card of opts.initialCards) {
+          if (card.column === "backlog" && (card.hasError || card.skipped || card.killed)) {
+            if (!activeIssueIds.has(card.id)) {
+              kanbanEmitter.emit("issue:reconcile-remove", card.id);
+              log(`Reconciled ${card.id}: no longer in source queue \u2014 removed from kanban`);
+            }
+          }
+        }
+      }
       for (const issue2 of allIssues) {
         kanbanEmitter.emit("issue:queued", issue2);
       }
@@ -7180,6 +7191,10 @@ var KanbanPersistence = class {
       this.updateCard(issueId, { column: "backlog", startedAt: void 0, killed: true });
       this.scheduleFlush();
     });
+    on("issue:reconcile-remove", (issueId) => {
+      this.removeCard(issueId);
+      this.scheduleFlush();
+    });
     on("issue:log-file", (issueId, logFile) => {
       this.updateCard(issueId, { logFile });
       this.scheduleFlush();
@@ -7213,6 +7228,9 @@ var KanbanPersistence = class {
     if (!existsSync9(dir)) mkdirSync4(dir, { recursive: true });
     writeFileSync12(this.statePath, JSON.stringify(this.state));
   }
+  removeCard(id) {
+    this.state.cards = this.state.cards.filter((c) => c.id !== id);
+  }
   upsertCard(id, title) {
     if (!this.state.cards.some((c) => c.id === id)) {
       this.state.cards.push({ id, title, column: "backlog", prUrls: [], outputLogTail: [] });
@@ -7297,7 +7315,7 @@ var run = defineCommand6({
       if (isTTY) {
         const { render } = await import("ink");
         const { createElement } = await import("react");
-        const { KanbanApp } = await import("./kanban-TOKVY5AS.js");
+        const { KanbanApp } = await import("./kanban-VOOYRIWF.js");
         const demoConfig = {
           provider: "claude",
           source: "linear",
@@ -7370,15 +7388,17 @@ Add them to your ${shell} and run: source ${shell}`));
       merged.workflow = "worktree";
     }
     let onBeforeExit;
+    let persistedCards;
     if (isTTY) {
       const workspace = resolve15(merged.workspace);
       const persistence = createKanbanPersistence(workspace);
       const initialCards = persistence.load();
+      persistedCards = initialCards;
       persistence.start();
       onBeforeExit = () => persistence.stop();
       const { render } = await import("ink");
       const { createElement } = await import("react");
-      const { KanbanApp } = await import("./kanban-TOKVY5AS.js");
+      const { KanbanApp } = await import("./kanban-VOOYRIWF.js");
       render(createElement(KanbanApp, { config: merged, initialCards }), { exitOnCtrlC: false });
     }
     await runLoop(merged, {
@@ -7388,7 +7408,8 @@ Add them to your ${shell} and run: source ${shell}`));
       dryRun: args["dry-run"],
       issueId: args.issue,
       concurrency,
-      onBeforeExit
+      onBeforeExit,
+      initialCards: persistedCards
     });
   }
 });

package/dist/{kanban-TOKVY5AS.js → kanban-VOOYRIWF.js}

@@ -2,7 +2,7 @@
 import {
   kanbanEmitter,
   useKanbanState
-} from "./chunk-HDOVPYNL.js";
+} from "./chunk-XE35VI6S.js";
 import {
   resetTitle,
   startSpinner,

package/dist/{paths-ZRUQ4GIN.js → paths-JE4IML2C.js}

@@ -10,7 +10,7 @@ import {
   getPrCachePath,
   projectHash,
   rotateLogFiles
-} from "./chunk-EK5XS7CB.js";
+} from "./chunk-7OCDGYDM.js";
 export {
   ensureCacheDir,
   getCacheDir,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@tarcisiopgs/lisa",
-  "version": "1.20.2",
+  "version": "1.21.1",
   "description": "Autonomous issue resolver",
   "keywords": [
     "loop",