@tangle-network/agent-knowledge 23.0.0 → 23.0.2

package/CHANGELOG.md

@@ -1,5 +1,15 @@
 # Changelog
 
+## 23.0.2
+
+A read of one store no longer evicts the rest of its run chain from the page cache. In 23.0.1, a chain over the 64 MiB cache bound, such as a 57 MiB run store with a 38 MiB inherited store, lost its other roots whenever `loadKnowledgePages` or the write intake read one store, so the next tool read re-read the inherited store whole. A root is now evicted only when it was not last read together with one of the roots being read.
+
+## 23.0.1
+
+Page reads stop re-reading unchanged stores. One in-process cache per store root and pages directory now serves `loadKnowledgePages`, `RunScopedStores.loadChain`, the knowledge tools and the write intake: a page file is read and parsed again only when its identity (device, inode, size, mtime, ctime) changed, a file changed within the last second is re-read until it settles, and a write followed by a read re-reads only the written files. Before, `loadKnowledgePages`, `loadChain` and the intake read every page on every call, and the tools re-read the whole store after any write of more than 64 pages. Search, read and resolve report `timing.pagesRead`, the files read from disk to refresh the view.
+
+The write intake's duplicate check compares only the candidates against the corpus, through hashed shingles kept per cached page, with no pair cap. Before, it shingled the whole corpus under the write lock and compared at most 250,000 candidate pairs and 1,000 reported pairs, so a duplicate in a large store could be admitted silently. `detectNearDuplicatePages` reports the same pairs as before and no longer grows its groups quadratically.
+
 ## 23.0.0
 
 Peer `@tangle-network/agent-eval` `^1.0.0`. Eval 1.0.0 ships the 0.223.0 API and promises that a minor is additive, so this range admits every later 1.x release and an app no longer waits for a Knowledge release to adopt an Eval minor. The peer no longer admits Eval 0.221 or 0.222; stay on Knowledge 22 with those. Development uses agent-eval 1.0.0, and package qualification runs at the range's floor and at the development pin instead of once per Eval minor.

package/README.md

@@ -169,6 +169,7 @@ pnpm exec agent-knowledge apply-write-blocks ./proposal.txt --root ./support-kb
 A duplicate is cleared by one authoring action, each of which turns the duplication into structure: cite the matched page, name it in `contradicts`, or give the candidate that page's id so the write updates it.
 The candidates are part of the corpus both checks see, so a proposal may cite a page it writes in the same call.
 `--intake-threshold` sets the duplicate similarity; the near-duplicate detector's own default applies when it is absent.
+The duplicate check compares only the candidates against the corpus, through each page's hashed shingles kept for the life of the process, so its cost follows the candidates and the corpus pages that share a shingle with them; the corpus report's pair caps never apply to it.
 
 The default layout is:
 
@@ -211,7 +212,9 @@ It does not report a partial write as tool success.
 The lower-level `applyKnowledgeWriteBlocks` API retains its explicit `written` and `warnings` result for callers that inspect partial proposals.
 `knowledge_resolve` returns the resolution status of each reference.
 Every tool result carries `timing` in milliseconds: `viewMs` to obtain the current page view for search, read and resolve, `visibilityMs` to persist a search's snapshot, and `lockWaitMs` and `lockHoldMs` for a record.
-Tools re-read only the page files whose identity changed since the previous call, and concurrent calls share one refresh.
+Search, read and resolve also count `pagesRead`, the files read from disk to refresh the view, when the stores come from `createRunScopedStores`.
+Every page read in a process, including `loadKnowledgePages` and the write intake, re-reads only the page files whose identity (device, inode, size, mtime, ctime) changed since the previous read, and concurrent calls share one refresh.
+A file changed within the last second is re-read until it settles, because a rewrite within one filesystem timestamp tick can keep its identity.
 
 Knowledge tools retain write history by default.
 Each transaction records the host actorId, runId, and exact prior and new bytes.

package/dist/cli.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { $ as loadSourceRegistry, Mt as layoutFor, Ot as initKnowledgeBase, R as validateKnowledgeIndex, X as writeKnowledgeIndex, Z as addSourcePath, a as applyKnowledgeWriteBlocksFile, n as inspectKnowledgeIndex, t as explainKnowledgeTarget, z as lintKnowledgeIndex } from "./inspect-tl0P7I7w.js";
+import { $ as loadSourceRegistry, Mt as layoutFor, Ot as initKnowledgeBase, R as validateKnowledgeIndex, X as writeKnowledgeIndex, Z as addSourcePath, a as applyKnowledgeWriteBlocksFile, n as inspectKnowledgeIndex, t as explainKnowledgeTarget, z as lintKnowledgeIndex } from "./inspect-DgLNFlsA.js";
 import { r as searchKnowledge } from "./search-BSGm7yxu.js";
 import { detectKnowledgeGaps, findSurprisingConnections, toKnowledgeVizGraph } from "./viz/index.js";
 import { existsSync, readFileSync } from "node:fs";

package/dist/index-B2s20NlV.d.ts.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -221,7 +221,7 @@ export interface KnowledgePagesOptions {
  * characters, and the package-owned `.agent-knowledge` and `raw` trees.
  */
 export declare function normalizePagesDirectory(value?: string): string;
-export interface KnowledgeLayout {
+interface KnowledgeLayout {
   root: string;
   knowledgeDir: string;
   rawSourcesDir: string;
@@ -501,7 +501,7 @@ export interface KnowledgeWriteIntakeOptions {
    * ambiguity.
    */
   readonly visiblePages: readonly OriginatedPage[];
-  /** Near-duplicate detector settings. The detector's own defaults apply when absent. */
+  /** Near-duplicate detector settings, whose defaults apply when absent; pair caps never apply. */
   readonly nearDuplicates?: NearDuplicateDetectionOptions;
   /** Refuse a citation that resolves to no visible page. Defaults to true. */
   readonly citations?: boolean;
@@ -3323,5 +3323,5 @@ export declare function extractWikilinks(content: string): string[];
 export declare function normalizeLinkTarget(target: string): string;
 export declare function isSafeKnowledgePath(path: string, allowedPrefixes?: string[]): boolean;
 export declare function parseKnowledgeWriteBlocks(text: string, allowedPrefixes?: string[]): KnowledgeWriteParseResult;
-export { AgentMemoryAdapter, AgentMemoryBranch, AgentMemoryBranchIsolation, AgentMemoryBranchLifetime, AgentMemoryBranchSnapshot, AgentMemoryContext, AgentMemoryHit, AgentMemoryHitSchema, AgentMemoryJournalEntry, AgentMemoryKind, AgentMemoryKindSchema, AgentMemoryLifecycleTimeoutError, AgentMemoryLifecycleUnsafeError, AgentMemoryScope, AgentMemoryScopeSchema, AgentMemorySearchOptions, AgentMemorySharingPolicy, AgentMemoryVisibility, AgentMemoryWriteInput, AgentMemoryWriteInputSchema, AgentMemoryWriteResult, Bm25Hit, Bm25Options, ClaimRef, CreateAgentMemoryBranchOptions, CreatePlayMemoryToolsOptions, DEFAULT_MEMORY_CLEANUP_TIMEOUT_MS, DeepQuestion, DeepQuestionKind, type ExternalRagEvalScore, ForkAgentMemoryBranchSnapshotOptions, GraphitiMcpClientLike, GraphitiMemoryAdapterOptions, GraphitiToolNames, HindsightClientLike, HindsightMemoryAdapterOptions, HindsightOperationUnknownError, KNOWLEDGE_EVENT_TYPES, KNOWLEDGE_SEARCH_RETRIEVER_ID, KnowledgeBaseCandidate, type KnowledgeBaseQualityOptions, type KnowledgeBaseQualityReport, type KnowledgeBrief, type KnowledgeBriefOptions, KnowledgeClaim, KnowledgeEvent, KnowledgeEventType, KnowledgeGraph, KnowledgeGraphEdge, KnowledgeGraphNode, KnowledgeId, type KnowledgeImprovementActivationPersistence, type KnowledgeImprovementCandidateRecord, type KnowledgeImprovementCandidateRef, type KnowledgeImprovementEvaluationInput, type KnowledgeImprovementEvaluator, type KnowledgeImprovementEvent, type KnowledgeImprovementEvidence, type KnowledgeImprovementMetric, type KnowledgeImprovementMetricProvenance, type KnowledgeImprovementMutationReceipt, type KnowledgeImprovementMutationResult, type KnowledgeImprovementOptions, type KnowledgeImprovementRagOptimizationOptions, type KnowledgeImprovementRagOptimizationRunInput, type KnowledgeImprovementResult, type KnowledgeImprovementRetrievalOptions, type KnowledgeImprovementRunState, type KnowledgeImprovementStatus, type KnowledgeImprovementTarget, type KnowledgeImprovementUpdate, type KnowledgeImprovementUpdateInput, KnowledgeIndex, KnowledgeLexicalFieldBoosts, KnowledgeLexicalIndex, KnowledgeLexicalIndexOptions, KnowledgeLexicalPosting, KnowledgeLintFinding, type KnowledgeMutationHold, type KnowledgeMutationLock, type KnowledgeMutationOptions, KnowledgePage, KnowledgePageInvalidation, KnowledgePolicy, type KnowledgeReadOptions, KnowledgeRelation, KnowledgeRelease, KnowledgeSearchHit, KnowledgeSearchResult, type KnowledgeStateScope, KnowledgeUnit, KnowledgeWriteBlock, KnowledgeWriteParseResult, type LoadKnowledgeImprovementActivationResultOptions, Mem0ClientMode, Mem0HostedClient, Mem0HostedMemoryAdapterOptions, Mem0MemoryAdapterOptions, Mem0OssClient, Mem0OssMemoryAdapterOptions, type NearDuplicateDetectionOptions, type NearDuplicatePair, type NearDuplicateReport, Neo4jAgentMemoryAdapterOptions, type OriginatedPage, type PageOrigin, type PendingKnowledgeMutation, PlayMemoryRetrievalReceipt, type PromoteKnowledgeCandidateOptions, type RagAnswerEvalArtifact, type RagAnswerEvalCase, type RagAnswerEvalScenario, type RagAnswerMetricSummary, type RagAnswerQualityHookOptions, type RagAnswerQualityJudgeOptions, type RagCalibrationOptions, type RagCalibrationResult, type RagEvalCitation, type RagEvalClaim, type RagEvalContext, type RagEvalMetricKey, type RagEvalProvider, type RagEvalSlice, type RagRequiredContext, type RecoverPendingKnowledgeMutationOptions, type RegularFileSnapshot, ResearchClaimEvidence, ResearchClaimLedger, ResearchClaimRecord, ResearchSourceVersion, type ResolvedKnowledgeImprovementCandidate, type ResolvedKnowledgeImprovementComparison, type ResolvedKnowledgeImprovementComparisonSnapshot, type RestoreKnowledgeCandidateBaselineOptions, RetrievalHoldoutBypassReason, RetrievalHoldoutCallContext, RetrievalHoldoutConfig, RetrievalHoldoutEligibleItem, RetrievalHoldoutEvent, RetrievalHoldoutOffPolicyOptions, RetrievalHoldoutOffPolicyResult, RetrievalHoldoutResult, RetrievalHoldoutSessionState, RetrievalHoldoutSessionSummary, type RunLineageAuthority, type RunLineageRecord, type RunScopedStores, type RunScopedStoresOptions, SearchKnowledgeOptions, SourceAnchor, SourceRecord, SourceRegistry, TrackedClaim, type UseKnowledgeImprovementCandidateOptions, type ValidateKnowledgeOptions, type ValidateKnowledgeResult, applyRetrievalHoldout, applySessionStickyRetrievalHoldout, buildKnowledgeLexicalIndex, createAgentMemoryBranch, createGraphitiMemoryAdapter, createHindsightMemoryAdapter, createInMemoryBenchmarkAdapter, createMem0MemoryAdapter, createMemoryExecutionPool, createNeo4jAgentMemoryAdapter, createNoopMemoryBenchmarkAdapter, createPlayMemoryTools, defaultGetMemoryContext, deterministicRng, emitRetrievalHoldoutBypass, forkAgentMemoryBranchSnapshot, graphitiMemoryAdapterIdentity, hindsightMemoryBankId, mem0MemoryAdapterIdentity, memoryHitToSourceRecord, memoryRecoveryDelayMs, memoryWriteResultToSourceRecord, reciprocalRankFusion, renderMemoryContext, resetRetrievalHoldoutRegistry, resolveMemoryCleanupTimeoutMs, retrievalHoldoutConfigHash, runBoundedMemoryLifecycle, scoreBm25, searchKnowledge, searchKnowledgePages, sleepForMemoryRecovery, toOffPolicyTrajectory, tokenizeQuery, tokenizeText };
+export { AgentMemoryAdapter, AgentMemoryBranch, AgentMemoryBranchIsolation, AgentMemoryBranchLifetime, AgentMemoryBranchSnapshot, AgentMemoryContext, AgentMemoryHit, AgentMemoryHitSchema, AgentMemoryJournalEntry, AgentMemoryKind, AgentMemoryKindSchema, AgentMemoryLifecycleTimeoutError, AgentMemoryLifecycleUnsafeError, AgentMemoryScope, AgentMemoryScopeSchema, AgentMemorySearchOptions, AgentMemorySharingPolicy, AgentMemoryVisibility, AgentMemoryWriteInput, AgentMemoryWriteInputSchema, AgentMemoryWriteResult, Bm25Hit, Bm25Options, ClaimRef, CreateAgentMemoryBranchOptions, CreatePlayMemoryToolsOptions, DEFAULT_MEMORY_CLEANUP_TIMEOUT_MS, DeepQuestion, DeepQuestionKind, type ExternalRagEvalScore, ForkAgentMemoryBranchSnapshotOptions, GraphitiMcpClientLike, GraphitiMemoryAdapterOptions, GraphitiToolNames, HindsightClientLike, HindsightMemoryAdapterOptions, HindsightOperationUnknownError, KNOWLEDGE_EVENT_TYPES, KNOWLEDGE_SEARCH_RETRIEVER_ID, KnowledgeBaseCandidate, type KnowledgeBaseQualityOptions, type KnowledgeBaseQualityReport, type KnowledgeBrief, type KnowledgeBriefOptions, KnowledgeClaim, KnowledgeEvent, KnowledgeEventType, KnowledgeGraph, KnowledgeGraphEdge, KnowledgeGraphNode, KnowledgeId, type KnowledgeImprovementActivationPersistence, type KnowledgeImprovementCandidateRecord, type KnowledgeImprovementCandidateRef, type KnowledgeImprovementEvaluationInput, type KnowledgeImprovementEvaluator, type KnowledgeImprovementEvent, type KnowledgeImprovementEvidence, type KnowledgeImprovementMetric, type KnowledgeImprovementMetricProvenance, type KnowledgeImprovementMutationReceipt, type KnowledgeImprovementMutationResult, type KnowledgeImprovementOptions, type KnowledgeImprovementRagOptimizationOptions, type KnowledgeImprovementRagOptimizationRunInput, type KnowledgeImprovementResult, type KnowledgeImprovementRetrievalOptions, type KnowledgeImprovementRunState, type KnowledgeImprovementStatus, type KnowledgeImprovementTarget, type KnowledgeImprovementUpdate, type KnowledgeImprovementUpdateInput, KnowledgeIndex, type KnowledgeLayout, KnowledgeLexicalFieldBoosts, KnowledgeLexicalIndex, KnowledgeLexicalIndexOptions, KnowledgeLexicalPosting, KnowledgeLintFinding, type KnowledgeMutationHold, type KnowledgeMutationLock, type KnowledgeMutationOptions, KnowledgePage, KnowledgePageInvalidation, KnowledgePolicy, type KnowledgeReadOptions, KnowledgeRelation, KnowledgeRelease, KnowledgeSearchHit, KnowledgeSearchResult, type KnowledgeStateScope, KnowledgeUnit, KnowledgeWriteBlock, KnowledgeWriteParseResult, type LoadKnowledgeImprovementActivationResultOptions, Mem0ClientMode, Mem0HostedClient, Mem0HostedMemoryAdapterOptions, Mem0MemoryAdapterOptions, Mem0OssClient, Mem0OssMemoryAdapterOptions, type NearDuplicateDetectionOptions, type NearDuplicatePair, type NearDuplicateReport, Neo4jAgentMemoryAdapterOptions, type OriginatedPage, type PageOrigin, type PendingKnowledgeMutation, PlayMemoryRetrievalReceipt, type PromoteKnowledgeCandidateOptions, type RagAnswerEvalArtifact, type RagAnswerEvalCase, type RagAnswerEvalScenario, type RagAnswerMetricSummary, type RagAnswerQualityHookOptions, type RagAnswerQualityJudgeOptions, type RagCalibrationOptions, type RagCalibrationResult, type RagEvalCitation, type RagEvalClaim, type RagEvalContext, type RagEvalMetricKey, type RagEvalProvider, type RagEvalSlice, type RagRequiredContext, type RecoverPendingKnowledgeMutationOptions, type RegularFileSnapshot, ResearchClaimEvidence, ResearchClaimLedger, ResearchClaimRecord, ResearchSourceVersion, type ResolvedKnowledgeImprovementCandidate, type ResolvedKnowledgeImprovementComparison, type ResolvedKnowledgeImprovementComparisonSnapshot, type RestoreKnowledgeCandidateBaselineOptions, RetrievalHoldoutBypassReason, RetrievalHoldoutCallContext, RetrievalHoldoutConfig, RetrievalHoldoutEligibleItem, RetrievalHoldoutEvent, RetrievalHoldoutOffPolicyOptions, RetrievalHoldoutOffPolicyResult, RetrievalHoldoutResult, RetrievalHoldoutSessionState, RetrievalHoldoutSessionSummary, type RunLineageAuthority, type RunLineageRecord, type RunScopedStores, type RunScopedStoresOptions, SearchKnowledgeOptions, SourceAnchor, SourceRecord, SourceRegistry, TrackedClaim, type UseKnowledgeImprovementCandidateOptions, type ValidateKnowledgeOptions, type ValidateKnowledgeResult, applyRetrievalHoldout, applySessionStickyRetrievalHoldout, buildKnowledgeLexicalIndex, createAgentMemoryBranch, createGraphitiMemoryAdapter, createHindsightMemoryAdapter, createInMemoryBenchmarkAdapter, createMem0MemoryAdapter, createMemoryExecutionPool, createNeo4jAgentMemoryAdapter, createNoopMemoryBenchmarkAdapter, createPlayMemoryTools, defaultGetMemoryContext, deterministicRng, emitRetrievalHoldoutBypass, forkAgentMemoryBranchSnapshot, graphitiMemoryAdapterIdentity, hindsightMemoryBankId, mem0MemoryAdapterIdentity, memoryHitToSourceRecord, memoryRecoveryDelayMs, memoryWriteResultToSourceRecord, reciprocalRankFusion, renderMemoryContext, resetRetrievalHoldoutRegistry, resolveMemoryCleanupTimeoutMs, retrievalHoldoutConfigHash, runBoundedMemoryLifecycle, scoreBm25, searchKnowledge, searchKnowledgePages, sleepForMemoryRecovery, toOffPolicyTrajectory, tokenizeQuery, tokenizeText };
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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package/dist/index.js

@@ -1,4 +1,4 @@
-import { $ as loadSourceRegistry, $n as writeFileDurableWithinRoot, $t as KNOWLEDGE_EVENT_TYPES, A as validateKnowledgePage, An as finishKnowledgeFileTransaction, At as isScaffoldPath, B as CHECKABLE_RUNG_THRESHOLD, Bn as canonicalRelativeWithinRoot, Bt as KnowledgeEventSchema, C as immutablePageDigest, Cn as runInKnowledgeMutationScope, Ct as resolveKnowledgeCitation, D as normalizeVisibilityArtifact, Dn as applyKnowledgeFileTransaction, Dt as SCAFFOLD_PAGE_BASENAMES, E as nonEmpty$1, En as withKnowledgeRead, Et as resolveRunScopedCitations, F as detectNearDuplicatePages, Fn as recordLockOwner, Ft as WIKILINK_REGEX, G as gradeClaims, Gn as readRegularFileWithinRoot, Gt as KnowledgePageSchema, H as UncheckableClaimError, Hn as isMissingFile, Ht as KnowledgeGraphNodeSchema, I as normalizePageText, In as takeOverDeadHolder, It as extractWikilinks, J as verifyGradeableEvidence, Jn as renameDurable, Jt as ResearchClaimLedgerSchema, K as gradeFor, Kn as relativeWithinRoot, Kt as KnowledgeRelationSchema, L as prepareKnowledgeValidation, Ln as DEFAULT_PAGES_DIRECTORY, Lt as normalizeLinkTarget, M as verifyKnowledgeVisibilitySnapshot, Mn as prepareKnowledgeFileTransaction, Mt as layoutFor, N as visibilityIdentity, Nn as rollbackKnowledgeFileTransaction, Nt as loadKnowledgePages, O as normalizeVisibilityRef, On as assertKnowledgeMutationPath, Ot as initKnowledgeBase, P as visibilityIndexOf, Pn as RUN_LEASE, Pt as writeJson, Q as addSourceText, Qn as writeFileDurable, Qt as SourceRecordSchema, R as validateKnowledgeIndex, Rn as normalizePagesDirectory, Rt as DeepQuestionSchema, S as encodeKnowledgeVisibilitySnapshot, Sn as recoverPendingKnowledgeMutation, St as parseKnowledgeCitationReference, T as knowledgeVisibilityArtifactRef, Tn as withKnowledgeMutationLabel, Tt as resolveRunScopedCitation, U as assertGradeableEvidence, Un as listRegularFilesWithinRoot, Ut as KnowledgeIndexSchema, V as DEADLINE_EXIT_CODE, Vn as isKernelAnchoredPath, Vt as KnowledgeGraphEdgeSchema, W as claimCheckKey, Wn as readRegularFileNoFollow, Wt as KnowledgePageInvalidationSchema, X as writeKnowledgeIndex, Xn as withSafeDescendant, Xt as ResearchSourceVersionSchema, Y as buildKnowledgeIndex, Yn as syncDirectory, Yt as ResearchClaimRecordSchema, Z as addSourcePath, Zn as withSafeDirectory, Zt as SourceAnchorSchema, _ as KNOWLEDGE_USE_RECEIPT_SCHEMA_VERSION, _n as parseFrontmatter, _t as assertKnowledgeCitationsResolved, a as applyKnowledgeWriteBlocksFile, an as claimEvidenceId, at as KB_CLAIM_LEDGER_DIR, b as decodeKnowledgeVisibilitySnapshot, bn as isKnowledgeMutationHeld, bt as auditKnowledgeCitations, c as KnowledgeDuplicateIntakeError, cn as deepQuestionId, ct as KB_STORE_DIR, d as createFileRunLineageAuthority, dn as materializeRegisteredClaimEvidence, dt as buildKnowledgeGraph, en as ClaimLedgerGoalConflictError, er as writeJsonDurable, et as snapshotSourceTextInput, f as createRunScopedStores, fn as mergeClaimLedgers, ft as knowledgePageRelations, g as KNOWLEDGE_RECEIPT_DIGEST_ALGORITHM, gn as formatFrontmatter, gt as assertKnowledgeCitationAudit, h as originatedPages, hn as researchSourceVersionKey, ht as assertCurrentRunCitationsResolved, i as applyKnowledgeWriteBlocks, in as assertTrackedClaimIntegrity, it as FileSystemKbStore, j as validateOrigin, jn as knowledgeFileTransactionPlanHash, jt as knowledgePageFromMarkdown, k as snapshotImmutableVisibility, kn as commitKnowledgeFileMutations, kt as isKnowledgePagePath, l as assertKnowledgeWriteIntake, ln as emptyClaimLedger, lt as MemoryKbStore, m as loadKnowledgeToolChain, mn as normalizeClaimText, mt as KnowledgeCitationResolutionError, n as inspectKnowledgeIndex, nn as assertResearchClaimEvidenceIntegrity, nr as mediaTypeFor, nt as writeSourceRegistry, o as isSafeKnowledgePath, on as claimId, ot as KB_EVENTS_PATH, p as isKnowledgeToolChain, pn as mergeTrackedClaims, pt as KnowledgeCitationAuditError, q as verdictFor, qn as removeDurable, qt as ResearchClaimEvidenceSchema, r as stringMetadata, rn as assertResearchClaimLedgerIntegrity, rr as textSourceAdapter, rt as ClaimLedgerMigrationRequiredError, s as parseKnowledgeWriteBlocks, sn as claimSourceHost, st as KB_INDEX_PATH, t as explainKnowledgeTarget, tn as assertDeepQuestionIntegrity, tr as writeJsonDurableWithinRoot, tt as sourceRegistryPath, u as RUN_LINEAGE_BASENAME, un as linkClaimContradictions, ut as assertClaimLedgerId, v as assertSchemaVersion, vn as acquireDurableFileLock, vt as assertRunScopedCitationsResolved, w as knowledgePageDigest, wn as withKnowledgeMutation, wt as resolveKnowledgeCitations, x as digest, xn as measureKnowledgeMutation, xt as formatKnowledgeCitationReference, y as createKnowledgeVisibilitySnapshot, yn as inspectPendingKnowledgeMutation, yt as auditCurrentRunCitations, z as lintKnowledgeIndex, zn as canonicalPathsEqual, zt as KnowledgeBaseCandidateSchema } from "./inspect-tl0P7I7w.js";
+import { $ as loadSourceRegistry, $n as writeFileDurableWithinRoot, $t as KNOWLEDGE_EVENT_TYPES, A as validateKnowledgePage, An as finishKnowledgeFileTransaction, At as isScaffoldPath, B as CHECKABLE_RUNG_THRESHOLD, Bn as canonicalRelativeWithinRoot, Bt as KnowledgeEventSchema, C as immutablePageDigest, Cn as runInKnowledgeMutationScope, Ct as resolveKnowledgeCitation, D as normalizeVisibilityArtifact, Dn as applyKnowledgeFileTransaction, Dt as SCAFFOLD_PAGE_BASENAMES, E as nonEmpty$1, En as withKnowledgeRead, Et as resolveRunScopedCitations, F as detectNearDuplicatePages, Fn as recordLockOwner, Ft as WIKILINK_REGEX, G as gradeClaims, Gn as readRegularFileWithinRoot, Gt as KnowledgePageSchema, H as UncheckableClaimError, Hn as isMissingFile, Ht as KnowledgeGraphNodeSchema, I as normalizePageText, In as takeOverDeadHolder, It as extractWikilinks, J as verifyGradeableEvidence, Jn as renameDurable, Jt as ResearchClaimLedgerSchema, K as gradeFor, Kn as relativeWithinRoot, Kt as KnowledgeRelationSchema, L as prepareKnowledgeValidation, Ln as DEFAULT_PAGES_DIRECTORY, Lt as normalizeLinkTarget, M as verifyKnowledgeVisibilitySnapshot, Mn as prepareKnowledgeFileTransaction, Mt as layoutFor, N as visibilityIdentity, Nn as rollbackKnowledgeFileTransaction, Nt as loadKnowledgePages, O as normalizeVisibilityRef, On as assertKnowledgeMutationPath, Ot as initKnowledgeBase, P as visibilityIndexOf, Pn as RUN_LEASE, Pt as writeJson, Q as addSourceText, Qn as writeFileDurable, Qt as SourceRecordSchema, R as validateKnowledgeIndex, Rn as normalizePagesDirectory, Rt as DeepQuestionSchema, S as encodeKnowledgeVisibilitySnapshot, Sn as recoverPendingKnowledgeMutation, St as parseKnowledgeCitationReference, T as knowledgeVisibilityArtifactRef, Tn as withKnowledgeMutationLabel, Tt as resolveRunScopedCitation, U as assertGradeableEvidence, Un as listRegularFilesWithinRoot, Ut as KnowledgeIndexSchema, V as DEADLINE_EXIT_CODE, Vn as isKernelAnchoredPath, Vt as KnowledgeGraphEdgeSchema, W as claimCheckKey, Wn as readRegularFileNoFollow, Wt as KnowledgePageInvalidationSchema, X as writeKnowledgeIndex, Xn as withSafeDescendant, Xt as ResearchSourceVersionSchema, Y as buildKnowledgeIndex, Yn as syncDirectory, Yt as ResearchClaimRecordSchema, Z as addSourcePath, Zn as withSafeDirectory, Zt as SourceAnchorSchema, _ as KNOWLEDGE_USE_RECEIPT_SCHEMA_VERSION, _n as parseFrontmatter, _t as assertKnowledgeCitationsResolved, a as applyKnowledgeWriteBlocksFile, an as claimEvidenceId, at as KB_CLAIM_LEDGER_DIR, b as decodeKnowledgeVisibilitySnapshot, bn as isKnowledgeMutationHeld, bt as auditKnowledgeCitations, c as KnowledgeDuplicateIntakeError, cn as deepQuestionId, ct as KB_STORE_DIR, d as createFileRunLineageAuthority, dn as materializeRegisteredClaimEvidence, dt as buildKnowledgeGraph, en as ClaimLedgerGoalConflictError, er as writeJsonDurable, et as snapshotSourceTextInput, f as createRunScopedStores, fn as mergeClaimLedgers, ft as knowledgePageRelations, g as KNOWLEDGE_RECEIPT_DIGEST_ALGORITHM, gn as formatFrontmatter, gt as assertKnowledgeCitationAudit, h as originatedPages, hn as researchSourceVersionKey, ht as assertCurrentRunCitationsResolved, i as applyKnowledgeWriteBlocks, in as assertTrackedClaimIntegrity, it as FileSystemKbStore, j as validateOrigin, jn as knowledgeFileTransactionPlanHash, jt as knowledgePageFromMarkdown, k as snapshotImmutableVisibility, kn as commitKnowledgeFileMutations, kt as isKnowledgePagePath, l as assertKnowledgeWriteIntake, ln as emptyClaimLedger, lt as MemoryKbStore, m as loadKnowledgeToolChain, mn as normalizeClaimText, mt as KnowledgeCitationResolutionError, n as inspectKnowledgeIndex, nn as assertResearchClaimEvidenceIntegrity, nr as mediaTypeFor, nt as writeSourceRegistry, o as isSafeKnowledgePath, on as claimId, ot as KB_EVENTS_PATH, p as isKnowledgeToolChain, pn as mergeTrackedClaims, pt as KnowledgeCitationAuditError, q as verdictFor, qn as removeDurable, qt as ResearchClaimEvidenceSchema, r as stringMetadata, rn as assertResearchClaimLedgerIntegrity, rr as textSourceAdapter, rt as ClaimLedgerMigrationRequiredError, s as parseKnowledgeWriteBlocks, sn as claimSourceHost, st as KB_INDEX_PATH, t as explainKnowledgeTarget, tn as assertDeepQuestionIntegrity, tr as writeJsonDurableWithinRoot, tt as sourceRegistryPath, u as RUN_LINEAGE_BASENAME, un as linkClaimContradictions, ut as assertClaimLedgerId, v as assertSchemaVersion, vn as acquireDurableFileLock, vt as assertRunScopedCitationsResolved, w as knowledgePageDigest, wn as withKnowledgeMutation, wt as resolveKnowledgeCitations, x as digest, xn as measureKnowledgeMutation, xt as formatKnowledgeCitationReference, y as createKnowledgeVisibilitySnapshot, yn as inspectPendingKnowledgeMutation, yt as auditCurrentRunCitations, z as lintKnowledgeIndex, zn as canonicalPathsEqual, zt as KnowledgeBaseCandidateSchema } from "./inspect-DgLNFlsA.js";
 import { i as textSourceId, n as slugify, r as stableId, t as sha256 } from "./ids-C-Z2Uv4c.js";
 import { a as buildKnowledgeLexicalIndex, c as tokenizeText, d as lexicalPageTerms, i as searchKnowledgePages, l as DEFAULT_FIELD_BOOSTS, n as reciprocalRankFusion, o as scoreBm25, r as searchKnowledge, s as tokenizeQuery, t as KNOWLEDGE_SEARCH_RETRIEVER_ID, u as assembleLexicalIndex } from "./search-BSGm7yxu.js";
 import { n as memoryWriteResultToSourceRecord, t as memoryHitToSourceRecord } from "./source-record-9ZPRR1P9.js";
@@ -4500,7 +4500,8 @@ function isoTimestamp(value, label) {
 *
 * Every result carries `timing` in milliseconds: `viewMs` to obtain the current
 * page view, `visibilityMs` to persist a search's snapshot, and for a write
-* `lockWaitMs` and `lockHoldMs` of the store lock.
+* `lockWaitMs` and `lockHoldMs` of the store lock. A read also counts `pagesRead`,
+* the files read from disk to refresh its view, when the package owns the stores.
 */
 const preparedViews = /* @__PURE__ */ new WeakMap();
 function prepareView(chain) {
@@ -4543,7 +4544,8 @@ function createKnowledgeTools(options) {
 	return [
 		tool("knowledge_search", "Search visible knowledge with unambiguous citation handles. Optionally include refuted history or filter tags and kinds.", searchInput, async (input) => {
 			const started = performance.now();
-			const prepared = prepareView(await loadKnowledgeToolChain(stores, runId));
+			const view = await loadKnowledgeToolChain(stores, runId);
+			const prepared = prepareView(view.chain);
 			const viewMs = elapsedSince(started);
 			const brief = prepared.brief(input.question, {
 				...options.brief,
@@ -4578,13 +4580,14 @@ function createKnowledgeTools(options) {
 				receipt,
 				timing: {
 					viewMs,
-					visibilityMs
+					visibilityMs,
+					...view.timing
 				}
 			};
 		}),
 		tool("knowledge_read", "Read one page by its id, optionally qualified with here::, shared:: or inherited:<runId>::.", readInput, async (input) => {
 			const started = performance.now();
-			const chain = await loadKnowledgeToolChain(stores, runId);
+			const { chain, timing } = await loadKnowledgeToolChain(stores, runId);
 			const viewMs = elapsedSince(started);
 			const resolution = resolveKnowledgeCitation(chain, parseKnowledgeCitationReference(input.pageId));
 			const digestOf = isKnowledgeToolChain(chain) ? immutablePageDigest : knowledgePageDigest;
@@ -4603,7 +4606,10 @@ function createKnowledgeTools(options) {
 					origin: candidate.origin,
 					path: candidate.page.path
 				})),
-				timing: { viewMs }
+				timing: {
+					viewMs,
+					...timing
+				}
 			};
 		}),
 		tool("knowledge_record", `Write pages into this run's store. Use complete blocks exactly like:\n---FILE: ${pagesDirectory}/example.md---\n# Example\nPage content.\n---END FILE---\nUse paths under ${pagesDirectory}/. Both delimiters must be on their own lines. To update a page, first knowledge_read it and pass expectedPageDigests[path] = pageDigest. Stale edits and malformed, unsafe, or empty proposals are rejected before writing any pages.`, recordInput, async (input) => {
@@ -4634,7 +4640,7 @@ function createKnowledgeTools(options) {
 		}),
 		tool("knowledge_resolve", "Resolve page ids against everything this run can see, without hiding an ambiguity.", resolveInput, async (input) => {
 			const started = performance.now();
-			const chain = await loadKnowledgeToolChain(stores, runId);
+			const { chain, timing } = await loadKnowledgeToolChain(stores, runId);
 			const viewMs = elapsedSince(started);
 			return {
 				resolutions: resolveKnowledgeCitations(chain, input.references.map((reference) => parseKnowledgeCitationReference(reference))).map((resolution) => ({
@@ -4647,7 +4653,10 @@ function createKnowledgeTools(options) {
 						path: candidate.page.path
 					}))
 				})),
-				timing: { viewMs }
+				timing: {
+					viewMs,
+					...timing
+				}
 			};
 		})
 	];
@@ -4657,7 +4666,7 @@ function elapsedSince(started) {
 }
 /** Everything the run can see except what it wrote, which the write path reads itself. */
 async function inheritedOf(stores, runId) {
-	return (await loadKnowledgeToolChain(stores, runId)).filter((entry) => entry.origin !== "here");
+	return (await loadKnowledgeToolChain(stores, runId)).chain.filter((e) => e.origin !== "here");
 }
 function tool(name, description, inputSchema, handler) {
 	return {