@tangle-network/agent-knowledge 1.9.0 → 1.11.0

package/dist/chunk-WWY5FTKQ.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/adapters.ts","../src/search.ts","../src/frontmatter.ts","../src/wikilinks.ts","../src/graph.ts","../src/store.ts","../src/sources.ts","../src/indexer.ts","../src/lint.ts","../src/metadata.ts","../src/inspect.ts","../src/write-protocol.ts","../src/proposals.ts","../src/schemas.ts","../src/validate.ts"],"sourcesContent":["import type { SourceRecord } from './types'\n\nexport interface SourceAdapterInput {\n  uri: string\n  bytes?: Uint8Array\n  text?: string\n  metadata?: Record<string, unknown>\n}\n\nexport interface SourceAdapterOutput {\n  title?: string\n  mediaType?: string\n  text?: string\n  anchors?: SourceRecord['anchors']\n  metadata?: Record<string, unknown>\n}\n\nexport interface SourceAdapter {\n  id: string\n  canLoad(input: SourceAdapterInput): boolean\n  load(input: SourceAdapterInput): Promise<SourceAdapterOutput> | SourceAdapterOutput\n}\n\nexport const textSourceAdapter: SourceAdapter = {\n  id: 'text',\n  canLoad: (input) => Boolean(input.text) || /\\.(md|txt|json|csv)$/i.test(input.uri),\n  load: (input) => ({\n    title: input.uri.split('/').pop(),\n    mediaType: mediaTypeFor(input.uri),\n    text: decodeText(input),\n    anchors: anchorsForText(input.uri, decodeText(input)),\n    metadata: input.metadata,\n  }),\n}\n\nexport function mediaTypeFor(uri: string): string {\n  const lower = uri.toLowerCase()\n  if (lower.endsWith('.md')) return 'text/markdown'\n  if (lower.endsWith('.txt')) return 'text/plain'\n  if (lower.endsWith('.json')) return 'application/json'\n  if (lower.endsWith('.csv')) return 'text/csv'\n  if (lower.endsWith('.pdf')) return 'application/pdf'\n  return 'application/octet-stream'\n}\n\nfunction decodeText(input: SourceAdapterInput): string | undefined {\n  return (\n    input.text ??\n    (input.bytes ? new TextDecoder().decode(input.bytes).slice(0, 200_000) : undefined)\n  )\n}\n\nfunction anchorsForText(uri: string, text: string | undefined): SourceAdapterOutput['anchors'] {\n  if (!text) return []\n  const lines = text.split('\\n')\n  const anchors: NonNullable<SourceAdapterOutput['anchors']> = [\n    { id: 'all', sourceId: '', label: 'Full source', lineStart: 1, lineEnd: lines.length },\n  ]\n  for (let i = 0; i < lines.length; i += 50) {\n    anchors.push({\n      id: `l${i + 1}`,\n      sourceId: '',\n      label: `${uri}:${i + 1}`,\n      lineStart: i + 1,\n      lineEnd: Math.min(lines.length, i + 50),\n    })\n  }\n  return anchors\n}\n","import type { KnowledgeIndex, KnowledgePage, KnowledgeSearchResult } from './types'\n\nconst RRF_K = 60\nconst STOP_WORDS = new Set([\n  'the',\n  'is',\n  'a',\n  'an',\n  'what',\n  'how',\n  'are',\n  'was',\n  'were',\n  'to',\n  'for',\n  'of',\n  'with',\n  'by',\n  'in',\n  'on',\n  'and',\n])\n\nexport function searchKnowledge(\n  index: KnowledgeIndex,\n  query: string,\n  limit = 10,\n): KnowledgeSearchResult[] {\n  const trimmed = query.trim()\n  if (trimmed === '') return []\n  const tokenRanked = rankByTokens(index.pages, trimmed)\n  const graphRanked = rankByGraph(index.pages, tokenRanked)\n  const scores = reciprocalRankFusion([tokenRanked.map((p) => p.id), graphRanked.map((p) => p.id)])\n  const byId = new Map(index.pages.map((page) => [page.id, page]))\n\n  const ranked = [...scores.entries()]\n    .map(([id, score]) => ({ page: byId.get(id), score }))\n    .filter((item): item is { page: KnowledgePage; score: number } => Boolean(item.page))\n    .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n    .slice(0, limit)\n\n  // Normalize against the top hit so callers can compare against natural\n  // [0, 1] thresholds. Raw RRF values are typically ~0.016, which reads as\n  // \"no relevance\" to humans even when the result is the best available.\n  // The top hit becomes 1 by definition; lower-ranked hits scale linearly.\n  const topScore = ranked[0]?.score ?? 0\n\n  return ranked.map((item, i) => ({\n    page: item.page,\n    score: item.score,\n    rrfScore: item.score,\n    normalizedScore: topScore > 0 ? item.score / topScore : 0,\n    rank: i + 1,\n    snippet: buildSnippet(item.page.text, trimmed),\n    reasons: reasonsFor(item.page, trimmed),\n  }))\n}\n\nexport function tokenizeQuery(query: string): string[] {\n  const raw = query\n    .toLowerCase()\n    .split(/[\\s,，。！？、；：\"\"''（）()\\-_/\\\\·~～…]+/)\n    .filter((token) => token.length > 1 && !STOP_WORDS.has(token))\n  const tokens: string[] = []\n  for (const token of raw) {\n    if (/[\\u4e00-\\u9fff\\u3400-\\u4dbf]/.test(token) && token.length > 2) {\n      const chars = [...token]\n      for (let i = 0; i < chars.length - 1; i++) tokens.push(chars[i]! + chars[i + 1]!)\n      tokens.push(...chars)\n    }\n    tokens.push(token)\n  }\n  return [...new Set(tokens)]\n}\n\nexport function reciprocalRankFusion(rankLists: string[][], k = RRF_K): Map<string, number> {\n  const scores = new Map<string, number>()\n  for (const list of rankLists) {\n    list.forEach((id, idx) => {\n      scores.set(id, (scores.get(id) ?? 0) + 1 / (k + idx + 1))\n    })\n  }\n  return scores\n}\n\nfunction rankByTokens(pages: KnowledgePage[], query: string): KnowledgePage[] {\n  const tokens = tokenizeQuery(query)\n  const effective = tokens.length > 0 ? tokens : [query.toLowerCase()]\n  return pages\n    .map((page) => ({ page, score: tokenScore(page, query, effective) }))\n    .filter((item) => item.score > 0)\n    .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n    .map((item) => item.page)\n}\n\nfunction rankByGraph(pages: KnowledgePage[], tokenRanked: KnowledgePage[]): KnowledgePage[] {\n  if (tokenRanked.length === 0) return []\n  const seeds = new Set(tokenRanked.slice(0, 5).map((page) => page.id))\n  return pages\n    .map((page) => ({\n      page,\n      score:\n        page.outLinks.filter((link) => seeds.has(link)).length +\n        page.sourceIds.filter((source) =>\n          tokenRanked.some((seed) => seed.sourceIds.includes(source)),\n        ).length,\n    }))\n    .filter((item) => item.score > 0)\n    .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n    .map((item) => item.page)\n}\n\nfunction tokenScore(page: KnowledgePage, query: string, tokens: string[]): number {\n  const title = page.title.toLowerCase()\n  const path = page.path.toLowerCase()\n  const body = page.text.toLowerCase()\n  const phrase = query.toLowerCase()\n  let score = 0\n  if (path.endsWith(`${phrase}.md`) || title === phrase) score += 200\n  if (title.includes(phrase)) score += 50\n  if (body.includes(phrase)) score += 20\n  for (const token of tokens) {\n    if (title.includes(token)) score += 5\n    if (body.includes(token)) score += 1\n    if (path.includes(token)) score += 3\n  }\n  return score\n}\n\nfunction buildSnippet(text: string, query: string): string {\n  const compact = text.replace(/\\s+/g, ' ').trim()\n  const idx = compact.toLowerCase().indexOf(query.toLowerCase())\n  if (idx < 0) return compact.slice(0, 180)\n  return compact.slice(Math.max(0, idx - 80), Math.min(compact.length, idx + query.length + 100))\n}\n\nfunction reasonsFor(page: KnowledgePage, query: string): string[] {\n  const lower = `${page.title}\\n${page.text}`.toLowerCase()\n  const reasons: string[] = []\n  if (lower.includes(query.toLowerCase())) reasons.push('phrase')\n  if (page.sourceIds.length > 0) reasons.push('sourced')\n  if (page.outLinks.length > 0) reasons.push('linked')\n  return reasons\n}\n","export interface ParsedFrontmatter {\n  frontmatter: Record<string, unknown>\n  body: string\n}\n\nexport function parseFrontmatter(content: string): ParsedFrontmatter {\n  const normalized = content.replace(/\\r\\n/g, '\\n')\n  if (!normalized.startsWith('---\\n')) return { frontmatter: {}, body: normalized }\n  const end = normalized.indexOf('\\n---', 4)\n  if (end < 0) return { frontmatter: {}, body: normalized }\n  const raw = normalized.slice(4, end)\n  const after = normalized.slice(end).replace(/^\\n---\\s*\\n?/, '')\n  return { frontmatter: parseSimpleYaml(raw), body: after }\n}\n\nexport function formatFrontmatter(frontmatter: Record<string, unknown>, body: string): string {\n  const lines = Object.entries(frontmatter)\n    .filter(([, value]) => value !== undefined)\n    .flatMap(([key, value]) => formatYamlField(key, value))\n  if (lines.length === 0) return body\n  return `---\\n${lines.join('\\n')}\\n---\\n${body.replace(/^\\n+/, '')}`\n}\n\nfunction parseSimpleYaml(raw: string): Record<string, unknown> {\n  const out: Record<string, unknown> = {}\n  const lines = raw.split('\\n')\n  for (let i = 0; i < lines.length; i++) {\n    const line = lines[i]!\n    const scalar = /^([A-Za-z0-9_-]+):\\s*(.*)$/.exec(line)\n    if (!scalar) continue\n    const key = scalar[1]!\n    const rest = scalar[2]!.trim()\n    if (rest === '') {\n      const items: string[] = []\n      while (i + 1 < lines.length) {\n        const item = /^\\s*-\\s*(.+?)\\s*$/.exec(lines[i + 1]!)\n        if (!item) break\n        items.push(unquote(item[1]!))\n        i++\n      }\n      out[key] = items\n      continue\n    }\n    if (rest.startsWith('[') && rest.endsWith(']')) {\n      out[key] = rest\n        .slice(1, -1)\n        .split(',')\n        .map((part) => unquote(part.trim()))\n        .filter(Boolean)\n    } else if (rest === 'true' || rest === 'false') {\n      out[key] = rest === 'true'\n    } else if (/^-?\\d+(?:\\.\\d+)?$/.test(rest)) {\n      out[key] = Number(rest)\n    } else {\n      out[key] = unquote(rest)\n    }\n  }\n  return out\n}\n\nfunction formatYamlField(key: string, value: unknown): string[] {\n  if (Array.isArray(value)) {\n    return [`${key}:`, ...value.map((item) => `  - ${String(item)}`)]\n  }\n  if (typeof value === 'string') return [`${key}: ${value}`]\n  if (typeof value === 'number' || typeof value === 'boolean') return [`${key}: ${String(value)}`]\n  return [`${key}: ${JSON.stringify(value)}`]\n}\n\nfunction unquote(value: string): string {\n  return value.replace(/^['\"]|['\"]$/g, '')\n}\n","export const WIKILINK_REGEX = /\\[\\[([^\\]|]+?)(?:\\|[^\\]]+?)?\\]\\]/g\n\nexport function extractWikilinks(content: string): string[] {\n  const links: string[] = []\n  const regex = new RegExp(WIKILINK_REGEX.source, 'g')\n  let match: RegExpExecArray | null\n  while ((match = regex.exec(content)) !== null) {\n    links.push(match[1]!.trim())\n  }\n  return [...new Set(links)]\n}\n\nexport function normalizeLinkTarget(target: string): string {\n  return target.trim().replace(/\\.md$/i, '').toLowerCase().replace(/\\s+/g, '-')\n}\n","import type { KnowledgeGraph, KnowledgeGraphEdge, KnowledgeGraphNode, KnowledgePage } from './types'\nimport { normalizeLinkTarget } from './wikilinks'\n\nexport function buildKnowledgeGraph(pages: KnowledgePage[]): KnowledgeGraph {\n  const byId = new Map<string, KnowledgePage>()\n  const bySlug = new Map<string, KnowledgePage>()\n  for (const page of pages) {\n    byId.set(page.id, page)\n    bySlug.set(normalizeLinkTarget(page.id), page)\n    bySlug.set(normalizeLinkTarget(page.title), page)\n    bySlug.set(normalizeLinkTarget(page.path.split('/').pop()!.replace(/\\.md$/, '')), page)\n  }\n\n  const incoming = new Map<string, number>()\n  const outgoing = new Map<string, number>()\n  const edgesByKey = new Map<string, KnowledgeGraphEdge>()\n  for (const page of pages) {\n    outgoing.set(page.id, 0)\n    incoming.set(page.id, 0)\n  }\n\n  for (const page of pages) {\n    for (const raw of page.outLinks) {\n      const target = bySlug.get(normalizeLinkTarget(raw))\n      if (!target || target.id === page.id) continue\n      const key = `${page.id}->${target.id}`\n      const edge = edgesByKey.get(key)\n      if (edge) edge.weight += 1\n      else\n        edgesByKey.set(key, {\n          source: page.id,\n          target: target.id,\n          weight: 1,\n          reasons: ['wikilink'],\n        })\n      outgoing.set(page.id, (outgoing.get(page.id) ?? 0) + 1)\n      incoming.set(target.id, (incoming.get(target.id) ?? 0) + 1)\n    }\n  }\n\n  addSourceOverlapEdges(pages, edgesByKey)\n\n  const nodes: KnowledgeGraphNode[] = pages.map((page) => ({\n    id: page.id,\n    title: page.title,\n    path: page.path,\n    tags: page.tags,\n    sourceIds: page.sourceIds,\n    outDegree: outgoing.get(page.id) ?? 0,\n    inDegree: incoming.get(page.id) ?? 0,\n  }))\n  return { nodes, edges: [...edgesByKey.values()].sort((a, b) => b.weight - a.weight) }\n}\n\nfunction addSourceOverlapEdges(\n  pages: KnowledgePage[],\n  edges: Map<string, KnowledgeGraphEdge>,\n): void {\n  for (let i = 0; i < pages.length; i++) {\n    for (let j = i + 1; j < pages.length; j++) {\n      const a = pages[i]!\n      const b = pages[j]!\n      const overlap = a.sourceIds.filter((source) => b.sourceIds.includes(source))\n      if (overlap.length === 0) continue\n      const key = `${a.id}->${b.id}`\n      const edge = edges.get(key)\n      if (edge) {\n        edge.weight += overlap.length * 0.5\n        edge.reasons.push('shared-source')\n      } else {\n        edges.set(key, {\n          source: a.id,\n          target: b.id,\n          weight: overlap.length * 0.5,\n          reasons: ['shared-source'],\n        })\n      }\n    }\n  }\n}\n","import { mkdir, readdir, readFile, stat, writeFile } from 'node:fs/promises'\nimport { dirname, join, relative } from 'node:path'\nimport { parseFrontmatter } from './frontmatter'\nimport { slugify } from './ids'\nimport type { KnowledgePage } from './types'\nimport { extractWikilinks, normalizeLinkTarget } from './wikilinks'\n\nexport interface KnowledgeLayout {\n  root: string\n  knowledgeDir: string\n  rawSourcesDir: string\n  sourceRegistryPath: string\n  indexPath: string\n  logPath: string\n  cacheDir: string\n}\n\nexport function layoutFor(root: string): KnowledgeLayout {\n  return {\n    root,\n    knowledgeDir: join(root, 'knowledge'),\n    rawSourcesDir: join(root, 'raw', 'sources'),\n    sourceRegistryPath: join(root, '.agent-knowledge', 'sources.json'),\n    indexPath: join(root, 'knowledge', 'index.md'),\n    logPath: join(root, 'knowledge', 'log.md'),\n    cacheDir: join(root, '.agent-knowledge'),\n  }\n}\n\n/**\n * Filenames that `initKnowledgeBase` writes as human-navigation scaffolding.\n * These are excluded from the page index — they exist on disk so authors can\n * curate their vault, but they are not searchable content.\n *\n * Add new scaffold filenames here (and only here) to keep lint, validate, viz,\n * and the indexer consistent.\n */\nexport const SCAFFOLD_PAGE_BASENAMES: readonly string[] = ['index.md', 'log.md']\n\n/**\n * True when a knowledge-relative path points at a scaffold file rather than\n * authored content. Accepts both repo-relative paths (`knowledge/index.md`)\n * and any nested `<dir>/index.md` or `<dir>/log.md` (for example\n * `knowledge/concepts/index.md`) so subdirectory README-style scaffolds are\n * also excluded.\n */\nexport function isScaffoldPath(path: string): boolean {\n  const normalized = path.replace(/\\\\/g, '/')\n  for (const basename of SCAFFOLD_PAGE_BASENAMES) {\n    if (normalized === `knowledge/${basename}`) return true\n    if (normalized.endsWith(`/${basename}`)) return true\n  }\n  return false\n}\n\nexport async function initKnowledgeBase(root: string): Promise<KnowledgeLayout> {\n  const layout = layoutFor(root)\n  await mkdir(layout.knowledgeDir, { recursive: true })\n  await mkdir(layout.rawSourcesDir, { recursive: true })\n  await mkdir(layout.cacheDir, { recursive: true })\n  await writeIfMissing(layout.indexPath, '# Knowledge Index\\n\\n')\n  await writeIfMissing(layout.logPath, '# Knowledge Log\\n\\n')\n  await writeIfMissing(\n    layout.sourceRegistryPath,\n    '{\\n  \"generatedAt\": \"1970-01-01T00:00:00.000Z\",\\n  \"sources\": []\\n}\\n',\n  )\n  return layout\n}\n\nexport async function loadKnowledgePages(root: string): Promise<KnowledgePage[]> {\n  const layout = layoutFor(root)\n  const files = await listMarkdownFiles(layout.knowledgeDir)\n  const pages: KnowledgePage[] = []\n  for (const file of files) {\n    const rel = relative(root, file).replace(/\\\\/g, '/')\n    if (isScaffoldPath(rel)) continue\n    const content = await readFile(file, 'utf8')\n    const { frontmatter, body } = parseFrontmatter(content)\n    const title =\n      stringField(frontmatter.title) ??\n      firstHeading(body) ??\n      rel.split('/').pop()!.replace(/\\.md$/, '')\n    const sourceIds = arrayField(frontmatter.sources)\n    const tags = arrayField(frontmatter.tags)\n    pages.push({\n      id:\n        stringField(frontmatter.id) ??\n        slugify(rel.replace(/^knowledge\\//, '').replace(/\\.md$/, '')),\n      path: rel,\n      title,\n      text: body,\n      frontmatter,\n      sourceIds,\n      tags,\n      outLinks: extractWikilinks(body).map(normalizeLinkTarget),\n    })\n  }\n  pages.sort((a, b) => a.path.localeCompare(b.path))\n  return pages\n}\n\nexport async function writeJson(path: string, value: unknown): Promise<void> {\n  await mkdir(dirname(path), { recursive: true })\n  await writeFile(path, `${JSON.stringify(value, null, 2)}\\n`, 'utf8')\n}\n\nasync function writeIfMissing(path: string, content: string): Promise<void> {\n  try {\n    await stat(path)\n  } catch {\n    await mkdir(dirname(path), { recursive: true })\n    await writeFile(path, content, 'utf8')\n  }\n}\n\nasync function listMarkdownFiles(root: string): Promise<string[]> {\n  try {\n    const entries = await readdir(root, { withFileTypes: true })\n    const out: string[] = []\n    for (const entry of entries) {\n      const full = join(root, entry.name)\n      if (entry.isDirectory()) out.push(...(await listMarkdownFiles(full)))\n      else if (entry.isFile() && entry.name.endsWith('.md')) out.push(full)\n    }\n    return out\n  } catch {\n    return []\n  }\n}\n\nfunction stringField(value: unknown): string | undefined {\n  return typeof value === 'string' && value.trim() !== '' ? value.trim() : undefined\n}\n\nfunction arrayField(value: unknown): string[] {\n  return Array.isArray(value)\n    ? value.filter((item): item is string => typeof item === 'string')\n    : []\n}\n\nfunction firstHeading(body: string): string | undefined {\n  return /^#\\s+(.+)$/m.exec(body)?.[1]?.trim()\n}\n","import { copyFile, mkdir, readdir, readFile, stat, writeFile } from 'node:fs/promises'\nimport { basename, dirname, join, relative } from 'node:path'\nimport { type SourceAdapter, textSourceAdapter } from './adapters'\nimport { sha256, slugify, stableId } from './ids'\nimport { layoutFor } from './store'\nimport type { SourceRecord, SourceRegistry } from './types'\n\nexport interface AddSourceOptions {\n  copyIntoRaw?: boolean\n  adapters?: SourceAdapter[]\n  now?: () => Date\n}\n\nexport interface AddSourceTextInput {\n  uri: string\n  text: string\n  title?: string\n  mediaType?: string\n  validUntil?: string\n  lastVerifiedAt?: string\n  metadata?: Record<string, unknown>\n}\n\nexport async function loadSourceRegistry(root: string): Promise<SourceRegistry> {\n  const path = sourceRegistryPath(root)\n  try {\n    const parsed = JSON.parse(await readFile(path, 'utf8')) as SourceRegistry\n    return {\n      generatedAt:\n        typeof parsed.generatedAt === 'string' ? parsed.generatedAt : new Date(0).toISOString(),\n      sources: Array.isArray(parsed.sources) ? parsed.sources : [],\n    }\n  } catch {\n    return { generatedAt: new Date(0).toISOString(), sources: [] }\n  }\n}\n\nexport async function writeSourceRegistry(root: string, registry: SourceRegistry): Promise<void> {\n  const path = sourceRegistryPath(root)\n  await mkdir(dirname(path), { recursive: true })\n  await writeFile(path, `${JSON.stringify(registry, null, 2)}\\n`, 'utf8')\n}\n\nexport async function addSourcePath(\n  root: string,\n  sourcePath: string,\n  options: AddSourceOptions = {},\n): Promise<SourceRecord[]> {\n  const s = await stat(sourcePath)\n  if (s.isDirectory()) {\n    const out: SourceRecord[] = []\n    for (const file of await listFiles(sourcePath)) {\n      out.push(...(await addSourcePath(root, file, options)))\n    }\n    return out\n  }\n\n  const layout = layoutFor(root)\n  await mkdir(layout.rawSourcesDir, { recursive: true })\n  const bytes = await readFile(sourcePath)\n  const contentHash = sha256(bytes.toString('base64'))\n  const fileName = basename(sourcePath)\n  const adapters = options.adapters ?? [textSourceAdapter]\n  const adapter = adapters.find((candidate) => candidate.canLoad({ uri: sourcePath, bytes }))\n  const loaded = adapter ? await adapter.load({ uri: sourcePath, bytes }) : {}\n  const id = stableId('src', `${contentHash}:${fileName}`)\n  const targetRel = join(\n    'raw',\n    'sources',\n    `${slugify(fileName.replace(/\\.[^.]+$/, ''))}-${contentHash.slice(0, 8)}${ext(fileName)}`,\n  ).replace(/\\\\/g, '/')\n  const targetAbs = join(root, targetRel)\n\n  if (options.copyIntoRaw ?? true) {\n    await mkdir(dirname(targetAbs), { recursive: true })\n    await copyFile(sourcePath, targetAbs)\n  }\n\n  const existing = await loadSourceRegistry(root)\n  const record: SourceRecord = {\n    id,\n    uri: targetRel,\n    title: loaded.title ?? fileName,\n    mediaType: loaded.mediaType ?? mediaTypeFor(fileName),\n    contentHash,\n    text: loaded.text ?? textPreview(fileName, bytes),\n    anchors: (loaded.anchors ?? []).map((anchor) => ({ ...anchor, sourceId: id })),\n    createdAt: (options.now ?? (() => new Date()))().toISOString(),\n    metadata: {\n      ...(loaded.metadata ?? {}),\n      originalPath: sourcePath,\n      sizeBytes: bytes.length,\n      projectRelativePath: relative(root, sourcePath).replace(/\\\\/g, '/'),\n    },\n  }\n  const next: SourceRegistry = {\n    generatedAt: new Date().toISOString(),\n    sources: [record, ...existing.sources.filter((source) => source.id !== id)],\n  }\n  await writeSourceRegistry(root, next)\n  return [record]\n}\n\nexport async function addSourceText(\n  root: string,\n  input: AddSourceTextInput,\n  options: Pick<AddSourceOptions, 'adapters' | 'now'> = {},\n): Promise<SourceRecord> {\n  const text = input.text\n  const contentHash = sha256(text)\n  const fileName = basename(input.uri) || `${slugify(input.title ?? input.uri)}.txt`\n  const adapterInput = { uri: input.uri, text, metadata: input.metadata }\n  const adapter = (options.adapters ?? [textSourceAdapter]).find((candidate) =>\n    candidate.canLoad(adapterInput),\n  )\n  const loaded = adapter ? await adapter.load(adapterInput) : {}\n  const id = stableId('src', `${contentHash}:${input.uri}`)\n  const targetRel = join(\n    'raw',\n    'sources',\n    `${slugify(fileName.replace(/\\.[^.]+$/, ''))}-${contentHash.slice(0, 8)}.txt`,\n  ).replace(/\\\\/g, '/')\n  const targetAbs = join(root, targetRel)\n  await mkdir(dirname(targetAbs), { recursive: true })\n  await writeFile(targetAbs, text.endsWith('\\n') ? text : `${text}\\n`, 'utf8')\n\n  const existing = await loadSourceRegistry(root)\n  const record: SourceRecord = {\n    id,\n    uri: targetRel,\n    title: input.title ?? loaded.title ?? fileName,\n    mediaType: input.mediaType ?? loaded.mediaType ?? 'text/plain',\n    contentHash,\n    text: loaded.text ?? text.slice(0, 200_000),\n    anchors: (loaded.anchors ?? []).map((anchor) => ({ ...anchor, sourceId: id })),\n    validUntil: input.validUntil,\n    lastVerifiedAt: input.lastVerifiedAt,\n    createdAt: (options.now ?? (() => new Date()))().toISOString(),\n    metadata: {\n      ...(loaded.metadata ?? {}),\n      ...(input.metadata ?? {}),\n      originalUri: input.uri,\n      sizeBytes: Buffer.byteLength(text, 'utf8'),\n    },\n  }\n  await writeSourceRegistry(root, {\n    generatedAt: new Date().toISOString(),\n    sources: [record, ...existing.sources.filter((source) => source.id !== id)],\n  })\n  return record\n}\n\nexport function sourceRegistryPath(root: string): string {\n  return join(layoutFor(root).cacheDir, 'sources.json')\n}\n\nasync function listFiles(root: string): Promise<string[]> {\n  const entries = await readdir(root, { withFileTypes: true })\n  const out: string[] = []\n  for (const entry of entries) {\n    const full = join(root, entry.name)\n    if (entry.isDirectory()) out.push(...(await listFiles(full)))\n    else if (entry.isFile()) out.push(full)\n  }\n  return out\n}\n\nfunction ext(fileName: string): string {\n  const idx = fileName.lastIndexOf('.')\n  return idx >= 0 ? fileName.slice(idx) : ''\n}\n\nfunction mediaTypeFor(fileName: string): string {\n  const lower = fileName.toLowerCase()\n  if (lower.endsWith('.md')) return 'text/markdown'\n  if (lower.endsWith('.txt')) return 'text/plain'\n  if (lower.endsWith('.json')) return 'application/json'\n  if (lower.endsWith('.csv')) return 'text/csv'\n  if (lower.endsWith('.pdf')) return 'application/pdf'\n  return 'application/octet-stream'\n}\n\nfunction textPreview(fileName: string, bytes: Buffer): string | undefined {\n  const mediaType = mediaTypeFor(fileName)\n  if (!mediaType.startsWith('text/') && mediaType !== 'application/json') return undefined\n  return bytes.toString('utf8').slice(0, 200_000)\n}\n","import { join } from 'node:path'\nimport { buildKnowledgeGraph } from './graph'\nimport { loadSourceRegistry } from './sources'\nimport { layoutFor, loadKnowledgePages, writeJson } from './store'\nimport type { KnowledgeIndex } from './types'\n\nexport async function buildKnowledgeIndex(root: string): Promise<KnowledgeIndex> {\n  const [pages, sourceRegistry] = await Promise.all([\n    loadKnowledgePages(root),\n    loadSourceRegistry(root),\n  ])\n  const index: KnowledgeIndex = {\n    root,\n    generatedAt: new Date().toISOString(),\n    sources: sourceRegistry.sources,\n    pages,\n    graph: buildKnowledgeGraph(pages),\n  }\n  return index\n}\n\nexport async function writeKnowledgeIndex(root: string): Promise<KnowledgeIndex> {\n  const index = await buildKnowledgeIndex(root)\n  await writeJson(join(layoutFor(root).cacheDir, 'index.json'), index)\n  return index\n}\n","import { isScaffoldPath } from './store'\nimport type { KnowledgeIndex, KnowledgeLintFinding } from './types'\nimport { normalizeLinkTarget } from './wikilinks'\n\nexport function lintKnowledgeIndex(index: KnowledgeIndex): KnowledgeLintFinding[] {\n  const findings: KnowledgeLintFinding[] = []\n  const byTarget = new Set<string>()\n  const titles = new Map<string, string[]>()\n  const sourceIds = new Set(index.sources.map((source) => source.id))\n  const anchorIds = new Map(\n    index.sources.map((source) => [\n      source.id,\n      new Set((source.anchors ?? []).map((anchor) => anchor.id)),\n    ]),\n  )\n  const pageIds = new Map<string, string[]>()\n  const sourceHashes = new Map<string, string[]>()\n  for (const page of index.pages) {\n    pageIds.set(page.id, [...(pageIds.get(page.id) ?? []), page.path])\n    byTarget.add(normalizeLinkTarget(page.id))\n    byTarget.add(normalizeLinkTarget(page.title))\n    byTarget.add(normalizeLinkTarget(page.path.split('/').pop()!.replace(/\\.md$/, '')))\n    const titleKey = page.title.toLowerCase()\n    titles.set(titleKey, [...(titles.get(titleKey) ?? []), page.path])\n  }\n  for (const source of index.sources) {\n    sourceHashes.set(source.contentHash, [\n      ...(sourceHashes.get(source.contentHash) ?? []),\n      source.id,\n    ])\n  }\n\n  const inbound = new Map<string, number>()\n  for (const page of index.pages) inbound.set(page.id, 0)\n  for (const page of index.pages) {\n    if (page.outLinks.length === 0 && !isScaffoldPath(page.path)) {\n      findings.push({\n        type: 'no-outlinks',\n        severity: 'info',\n        page: page.path,\n        message: 'Page has no wikilinks to other knowledge pages.',\n      })\n    }\n    for (const link of page.outLinks) {\n      if (!byTarget.has(normalizeLinkTarget(link))) {\n        findings.push({\n          type: 'broken-link',\n          severity: 'warning',\n          page: page.path,\n          message: `Broken wikilink [[${link}]].`,\n        })\n      }\n    }\n  }\n\n  for (const edge of index.graph.edges)\n    inbound.set(edge.target, (inbound.get(edge.target) ?? 0) + 1)\n  for (const page of index.pages) {\n    if (!isScaffoldPath(page.path) && (inbound.get(page.id) ?? 0) === 0) {\n      findings.push({\n        type: 'orphan',\n        severity: 'info',\n        page: page.path,\n        message: 'No other page links to this page.',\n      })\n    }\n    if (/\\bclaim\\b/i.test(page.text) && page.sourceIds.length === 0) {\n      findings.push({\n        type: 'uncited-claim',\n        severity: 'warning',\n        page: page.path,\n        message: 'Page appears to contain claims but has no sources frontmatter.',\n      })\n    }\n    for (const sourceId of page.sourceIds) {\n      if (!sourceIds.has(sourceId)) {\n        findings.push({\n          type: 'missing-source',\n          severity: 'error',\n          page: page.path,\n          message: `Page cites unknown source \"${sourceId}\".`,\n          metadata: { sourceId },\n        })\n      }\n    }\n    for (const ref of extractSourceRefs(page.text)) {\n      if (!sourceIds.has(ref.sourceId)) {\n        findings.push({\n          type: 'missing-source',\n          severity: 'error',\n          page: page.path,\n          message: `Page cites unknown source \"${ref.sourceId}\".`,\n          metadata: ref,\n        })\n      } else if (ref.anchorId && !anchorIds.get(ref.sourceId)?.has(ref.anchorId)) {\n        findings.push({\n          type: 'missing-source',\n          severity: 'error',\n          page: page.path,\n          message: `Page cites unknown source anchor \"${ref.sourceId}#${ref.anchorId}\".`,\n          metadata: ref,\n        })\n      }\n    }\n  }\n\n  for (const [title, paths] of titles) {\n    if (title && paths.length > 1) {\n      findings.push({\n        type: 'duplicate-title',\n        severity: 'warning',\n        message: `Duplicate title \"${title}\" in ${paths.join(', ')}.`,\n        metadata: { paths },\n      })\n    }\n  }\n  for (const [id, paths] of pageIds) {\n    if (id && paths.length > 1) {\n      findings.push({\n        type: 'duplicate-page-id',\n        severity: 'error',\n        message: `Duplicate page id \"${id}\" in ${paths.join(', ')}.`,\n        metadata: { paths },\n      })\n    }\n  }\n  for (const [hash, ids] of sourceHashes) {\n    if (hash && ids.length > 1) {\n      findings.push({\n        type: 'duplicate-source-hash',\n        severity: 'warning',\n        message: `Duplicate source content hash across ${ids.join(', ')}.`,\n        metadata: { sourceIds: ids },\n      })\n    }\n  }\n  return findings\n}\n\nfunction extractSourceRefs(text: string): Array<{ sourceId: string; anchorId?: string }> {\n  const refs: Array<{ sourceId: string; anchorId?: string }> = []\n  const regex = /\\[\\^([A-Za-z0-9_-]+)(?:#([A-Za-z0-9_.:-]+))?\\]/g\n  let match: RegExpExecArray | null\n  while ((match = regex.exec(text)) !== null) {\n    refs.push({ sourceId: match[1]!, anchorId: match[2] })\n  }\n  return refs\n}\n","/**\n * Read a string value from an optional metadata bag, returning `undefined`\n * when the key is absent or holds a non-string value. Shared by the readiness\n * and inspection paths so the \"string field of an untyped record\" coercion is\n * single-sourced.\n *\n * Internal — not re-exported through the package barrel.\n */\nexport function stringMetadata(\n  metadata: Record<string, unknown> | undefined,\n  key: string,\n): string | undefined {\n  const value = metadata?.[key]\n  return typeof value === 'string' ? value : undefined\n}\n","import { lintKnowledgeIndex } from './lint'\nimport { stringMetadata } from './metadata'\nimport { searchKnowledge } from './search'\nimport type { KnowledgeIndex, KnowledgeLintFinding, KnowledgePage } from './types'\n\nexport interface KnowledgeInspection {\n  pageCount: number\n  sourceCount: number\n  expiredSourceCount: number\n  staleSourceCount: number\n  edgeCount: number\n  findingCount: number\n  blockingFindingCount: number\n  topPages: Array<{ path: string; title: string; degree: number; sources: number }>\n  sourceFreshness: SourceFreshnessInspection[]\n  findings: KnowledgeLintFinding[]\n}\n\nexport interface SourceFreshnessInspection {\n  id: string\n  title?: string\n  uri: string\n  status: 'fresh' | 'expired' | 'unknown'\n  validUntil?: string\n  lastVerifiedAt?: string\n}\n\nexport function inspectKnowledgeIndex(\n  index: KnowledgeIndex,\n  options: { now?: Date } = {},\n): KnowledgeInspection {\n  const now = options.now ?? new Date()\n  const findings = lintKnowledgeIndex(index)\n  const degree = new Map(index.graph.nodes.map((node) => [node.id, node.inDegree + node.outDegree]))\n  const sourceFreshness = index.sources.map((source) => inspectSourceFreshness(source, now))\n  return {\n    pageCount: index.pages.length,\n    sourceCount: index.sources.length,\n    expiredSourceCount: sourceFreshness.filter((source) => source.status === 'expired').length,\n    staleSourceCount: sourceFreshness.filter((source) => source.status !== 'fresh').length,\n    edgeCount: index.graph.edges.length,\n    findingCount: findings.length,\n    blockingFindingCount: findings.filter((finding) => finding.severity === 'error').length,\n    topPages: [...index.pages]\n      .sort((a, b) => (degree.get(b.id) ?? 0) - (degree.get(a.id) ?? 0))\n      .slice(0, 10)\n      .map((page) => ({\n        path: page.path,\n        title: page.title,\n        degree: degree.get(page.id) ?? 0,\n        sources: page.sourceIds.length,\n      })),\n    sourceFreshness,\n    findings,\n  }\n}\n\nfunction inspectSourceFreshness(\n  source: KnowledgeIndex['sources'][number],\n  now: Date,\n): SourceFreshnessInspection {\n  const validUntil =\n    source.validUntil ??\n    stringMetadata(source.metadata, 'validUntil') ??\n    stringMetadata(source.metadata, 'expiresAt')\n  const lastVerifiedAt = source.lastVerifiedAt ?? stringMetadata(source.metadata, 'lastVerifiedAt')\n  const status =\n    validUntil && Number.isFinite(Date.parse(validUntil))\n      ? Date.parse(validUntil) <= now.getTime()\n        ? 'expired'\n        : 'fresh'\n      : 'unknown'\n  return { id: source.id, title: source.title, uri: source.uri, status, validUntil, lastVerifiedAt }\n}\n\nexport interface KnowledgeExplanation {\n  target: string\n  page?: KnowledgePage\n  sources: Array<{ id: string; title?: string; uri: string }>\n  links: string[]\n  inbound: string[]\n  related: Array<{ path: string; title: string; score: number }>\n}\n\nexport function explainKnowledgeTarget(\n  index: KnowledgeIndex,\n  target: string,\n): KnowledgeExplanation {\n  const page = index.pages.find(\n    (candidate) =>\n      candidate.path === target ||\n      candidate.id === target ||\n      candidate.title.toLowerCase() === target.toLowerCase(),\n  )\n  const inbound = page\n    ? index.graph.edges\n        .filter((edge) => edge.target === page.id)\n        .map(\n          (edge) =>\n            index.pages.find((candidate) => candidate.id === edge.source)?.path ?? edge.source,\n        )\n    : []\n  const related = page\n    ? searchKnowledge(index, `${page.title} ${page.tags.join(' ')}`, 6)\n        .filter((result) => result.page.id !== page.id)\n        .map((result) => ({\n          path: result.page.path,\n          title: result.page.title,\n          score: result.score,\n        }))\n    : searchKnowledge(index, target, 6).map((result) => ({\n        path: result.page.path,\n        title: result.page.title,\n        score: result.score,\n      }))\n  return {\n    target,\n    page,\n    sources: page\n      ? index.sources\n          .filter((source) => page.sourceIds.includes(source.id))\n          .map((source) => ({ id: source.id, title: source.title, uri: source.uri }))\n      : [],\n    links: page?.outLinks ?? [],\n    inbound,\n    related,\n  }\n}\n","import type { KnowledgeWriteParseResult } from './types'\n\nconst OPENER_LINE = /^---\\s*FILE:\\s*(.+?)\\s*---\\s*$/i\nconst CLOSER_LINE = /^---\\s*END\\s+FILE\\s*---\\s*$/i\nconst FENCE_LINE = /^\\s{0,3}(```+|~~~+)/\n\nexport function isSafeKnowledgePath(path: string, allowedPrefixes = ['knowledge/']): boolean {\n  if (typeof path !== 'string' || path.trim() === '') return false\n  // Path-safety validation must reject any control character that could be used\n  // in path-traversal / encoding attacks. Built via String.fromCharCode rather\n  // than inline `\\xNN` escapes to keep biome's regex-control-char rule happy.\n  const controlRangeRegex = new RegExp(`[${String.fromCharCode(0)}-${String.fromCharCode(0x1f)}]`)\n  if (controlRangeRegex.test(path)) return false\n  if (path.startsWith('/') || path.startsWith('\\\\')) return false\n  if (/^[a-zA-Z]:/.test(path)) return false\n  const normalized = path.replace(/\\\\/g, '/')\n  if (normalized.split('/').some((part) => part === '..')) return false\n  return allowedPrefixes.some((prefix) => normalized.startsWith(prefix))\n}\n\nexport function parseKnowledgeWriteBlocks(\n  text: string,\n  allowedPrefixes = ['knowledge/'],\n): KnowledgeWriteParseResult {\n  const lines = text.replace(/\\r\\n/g, '\\n').split('\\n')\n  const blocks: KnowledgeWriteParseResult['blocks'] = []\n  const warnings: string[] = []\n  let i = 0\n\n  while (i < lines.length) {\n    const opener = OPENER_LINE.exec(lines[i]!)\n    if (!opener) {\n      i++\n      continue\n    }\n    const path = opener[1]!.trim()\n    i++\n    const contentLines: string[] = []\n    let fenceMarker: string | null = null\n    let fenceLen = 0\n    let closed = false\n\n    while (i < lines.length) {\n      const line = lines[i]!\n      const fence = FENCE_LINE.exec(line)\n      if (fence) {\n        const run = fence[1]!\n        const char = run[0]!\n        if (fenceMarker === null) {\n          fenceMarker = char\n          fenceLen = run.length\n        } else if (char === fenceMarker && run.length >= fenceLen) {\n          fenceMarker = null\n          fenceLen = 0\n        }\n        contentLines.push(line)\n        i++\n        continue\n      }\n      if (fenceMarker === null && CLOSER_LINE.test(line)) {\n        closed = true\n        i++\n        break\n      }\n      contentLines.push(line)\n      i++\n    }\n\n    if (!closed) {\n      warnings.push(`FILE block \"${path || '(empty)'}\" was not closed before end of stream.`)\n      continue\n    }\n    if (!isSafeKnowledgePath(path, allowedPrefixes)) {\n      warnings.push(`FILE block with unsafe path \"${path}\" rejected.`)\n      continue\n    }\n    blocks.push({ path, content: contentLines.join('\\n') })\n  }\n\n  return { blocks, warnings }\n}\n","import { mkdir, readFile, writeFile } from 'node:fs/promises'\nimport { dirname, join } from 'node:path'\nimport { parseKnowledgeWriteBlocks } from './write-protocol'\n\nexport interface ApplyWriteBlocksResult {\n  written: string[]\n  warnings: string[]\n}\n\nexport async function applyKnowledgeWriteBlocks(\n  root: string,\n  proposalText: string,\n): Promise<ApplyWriteBlocksResult> {\n  const parsed = parseKnowledgeWriteBlocks(proposalText)\n  const written: string[] = []\n  for (const block of parsed.blocks) {\n    const path = join(root, block.path)\n    await mkdir(dirname(path), { recursive: true })\n    await writeFile(\n      path,\n      block.content.endsWith('\\n') ? block.content : `${block.content}\\n`,\n      'utf8',\n    )\n    written.push(block.path)\n  }\n  return { written, warnings: parsed.warnings }\n}\n\nexport async function applyKnowledgeWriteBlocksFile(\n  root: string,\n  proposalPath: string,\n): Promise<ApplyWriteBlocksResult> {\n  return applyKnowledgeWriteBlocks(root, await readFile(proposalPath, 'utf8'))\n}\n","import { z } from 'zod'\n\nexport const SourceAnchorSchema = z.object({\n  id: z.string().min(1),\n  sourceId: z.string().min(1),\n  label: z.string().optional(),\n  page: z.number().int().positive().optional(),\n  lineStart: z.number().int().positive().optional(),\n  lineEnd: z.number().int().positive().optional(),\n  charStart: z.number().int().nonnegative().optional(),\n  charEnd: z.number().int().nonnegative().optional(),\n  timestampMs: z.number().nonnegative().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n})\n\nexport const SourceRecordSchema = z.object({\n  id: z.string().min(1),\n  uri: z.string().min(1),\n  title: z.string().optional(),\n  mediaType: z.string().optional(),\n  contentHash: z.string().min(16),\n  text: z.string().optional(),\n  anchors: z.array(SourceAnchorSchema).optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n  createdAt: z.string().min(1),\n})\n\nexport const KnowledgePageSchema = z.object({\n  id: z.string().min(1),\n  path: z.string().min(1),\n  title: z.string().min(1),\n  text: z.string(),\n  frontmatter: z.record(z.string(), z.unknown()),\n  sourceIds: z.array(z.string()),\n  tags: z.array(z.string()),\n  outLinks: z.array(z.string()),\n})\n\nexport const KnowledgeGraphNodeSchema = z.object({\n  id: z.string(),\n  title: z.string(),\n  path: z.string(),\n  tags: z.array(z.string()),\n  sourceIds: z.array(z.string()),\n  outDegree: z.number().int().nonnegative(),\n  inDegree: z.number().int().nonnegative(),\n})\n\nexport const KnowledgeGraphEdgeSchema = z.object({\n  source: z.string(),\n  target: z.string(),\n  weight: z.number(),\n  reasons: z.array(z.string()),\n})\n\nexport const KnowledgeIndexSchema = z.object({\n  root: z.string(),\n  generatedAt: z.string(),\n  sources: z.array(SourceRecordSchema),\n  pages: z.array(KnowledgePageSchema),\n  graph: z.object({\n    nodes: z.array(KnowledgeGraphNodeSchema),\n    edges: z.array(KnowledgeGraphEdgeSchema),\n  }),\n})\n\nexport const KnowledgeEventSchema = z.object({\n  id: z.string().min(1),\n  type: z.enum([\n    'source.added',\n    'proposal.applied',\n    'index.built',\n    'lint.run',\n    'optimization.run',\n    'release.promoted',\n    'release.rejected',\n  ]),\n  createdAt: z.string().min(1),\n  actor: z.string().optional(),\n  target: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n})\n\nexport const KnowledgeBaseCandidateSchema = z.object({\n  id: z.string().min(1),\n  units: z.array(\n    z.object({\n      id: z.string().min(1),\n      title: z.string().min(1),\n      text: z.string(),\n      claims: z\n        .array(\n          z.object({\n            id: z.string().min(1),\n            text: z.string().min(1),\n            refs: z.array(\n              z.object({\n                sourceId: z.string().min(1),\n                anchorId: z.string().optional(),\n                quote: z.string().optional(),\n              }),\n            ),\n            confidence: z.number().min(0).max(1).optional(),\n            status: z.enum(['draft', 'active', 'superseded', 'rejected']).optional(),\n            metadata: z.record(z.string(), z.unknown()).optional(),\n          }),\n        )\n        .optional(),\n      relations: z\n        .array(\n          z.object({\n            sourceId: z.string(),\n            targetId: z.string(),\n            predicate: z.string(),\n            weight: z.number().optional(),\n            metadata: z.record(z.string(), z.unknown()).optional(),\n          }),\n        )\n        .optional(),\n      sourceIds: z.array(z.string()).optional(),\n      tags: z.array(z.string()).optional(),\n      metadata: z.record(z.string(), z.unknown()).optional(),\n      updatedAt: z.string().optional(),\n    }),\n  ),\n  retrievalPolicy: z.string().optional(),\n  synthesisPolicy: z.string().optional(),\n  questionPolicy: z.string().optional(),\n  updatePolicy: z.string().optional(),\n  metadata: z.record(z.string(), z.unknown()).optional(),\n})\n","import { lintKnowledgeIndex } from './lint'\nimport { KnowledgeIndexSchema } from './schemas'\nimport { isScaffoldPath } from './store'\nimport type { KnowledgeIndex, KnowledgeLintFinding } from './types'\n\nexport interface ValidateKnowledgeOptions {\n  strict?: boolean\n}\n\nexport interface ValidateKnowledgeResult {\n  ok: boolean\n  findings: KnowledgeLintFinding[]\n}\n\nexport function validateKnowledgeIndex(\n  index: KnowledgeIndex,\n  options: ValidateKnowledgeOptions = {},\n): ValidateKnowledgeResult {\n  const findings = [...lintKnowledgeIndex(index)]\n  const parsed = KnowledgeIndexSchema.safeParse(index)\n  if (!parsed.success) {\n    findings.push({\n      type: 'missing-frontmatter',\n      severity: 'error',\n      message: parsed.error.issues\n        .map((issue) => `${issue.path.join('.')}: ${issue.message}`)\n        .join('; '),\n    })\n  }\n  if (options.strict) {\n    for (const page of index.pages) {\n      if (isScaffoldPath(page.path)) continue\n      if (!page.frontmatter.id || !page.frontmatter.title) {\n        findings.push({\n          type: 'missing-frontmatter',\n          severity: 'error',\n          page: page.path,\n          message: 'Strict mode requires id and title frontmatter.',\n        })\n      }\n    }\n  }\n  return { ok: !findings.some((finding) => finding.severity === 'error'), findings 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package/dist/profiles/index.d.ts

@@ -1,194 +0,0 @@
-import { Validator, AgentRunSpec, OutputAdapter, Driver, AgentProfile } from '@tangle-network/agent-runtime/loops';
-
-/**
- * @experimental
- *
- * `researcherProfile` — opinionated preset for source-grounded research
- * tasks. The agent is told to:
- *   - bound its work to a single `knowledgeNamespace`
- *   - emit `items[]` carrying provenance + confidence
- *   - emit `citations[]` linking quotes back to source urls
- *   - emit `proposedWrites[]` — never call materialize itself
- *   - describe `gaps` it could not answer
- *
- * The profile is stateless and agent-agnostic. `harness` selects the
- * sandbox-SDK backend. For heterogeneous fanout, use
- * `multiHarnessResearcherFanout`.
- *
- * Propose-don't-apply: the profile NEVER writes to the knowledge base.
- * It produces `proposedWrites: KnowledgeUpdate[]` in the output. The
- * caller (gtm-agent, journey-eval, user) decides whether to feed those
- * updates through `applyKnowledgeWriteBlocks` / a KbStore put.
- *
- * Namespace isolation: every `KnowledgeItem` + `KnowledgeUpdate` in the
- * output carries `namespace`. The validator hard-fails when any item
- * touches a namespace other than `task.knowledgeNamespace`.
- */
-
-/** @experimental */
-type ResearchSource = 'web' | 'corpus' | 'twitter' | 'github' | 'docs';
-/** @experimental */
-interface ResearchTask {
-    /** The research question to answer. */
-    question: string;
-    /** Bound: e.g. "audience for cpg-founder ICP". */
-    scope?: string;
-    /** Multi-tenant scope (customer-id, workspace-id). Validator enforces. */
-    knowledgeNamespace: string;
-    sources?: ResearchSource[];
-    recencyWindow?: {
-        since?: Date;
-        until?: Date;
-    };
-    maxItems?: number;
-    /** Per-item minimum confidence in [0, 1]. Validator scores recall vs this. */
-    minConfidence?: number;
-}
-/**
- * Knowledge item emitted by the researcher.
- *
- * Profile-local type. When agent-knowledge promotes `KnowledgeClaim` →
- * top-level `KnowledgeItem` substrate-wide, these fields collapse 1:1.
- *
- * @experimental
- */
-interface KnowledgeItem {
-    id: string;
-    /** Multi-tenant scope. MUST equal `task.knowledgeNamespace`. */
-    namespace: string;
-    /** The factual claim, in the researcher's words. */
-    claim: string;
-    /** Provenance — at least one entry required. */
-    evidence: Array<{
-        source: string;
-        quote?: string;
-        url?: string;
-        capturedAt: number;
-    }>;
-    /** Researcher's self-reported confidence in [0, 1]. */
-    confidence: number;
-    /** Prior item ids this supersedes (chain). */
-    supersedes?: string[];
-    /** Set if the agent is retracting an earlier item. Unix ms. */
-    retractedAt?: number;
-    authoredBy: {
-        kind: 'human' | 'agent';
-        id: string;
-    };
-}
-/**
- * A proposed write to the knowledge base. The profile does NOT apply
- * these — the caller decides.
- *
- * @experimental
- */
-type KnowledgeUpdate = {
-    kind: 'insert';
-    namespace: string;
-    item: KnowledgeItem;
-} | {
-    kind: 'supersede';
-    namespace: string;
-    previousId: string;
-    item: KnowledgeItem;
-} | {
-    kind: 'retract';
-    namespace: string;
-    itemId: string;
-    reason: string;
-};
-/**
- * Researcher output. Required fields are typed; optional fields preserve
- * the agent's free-form intelligence (`notes`, `raw`). The validator
- * enforces the typed minimum.
- *
- * @experimental
- */
-interface ResearchOutput {
-    items: KnowledgeItem[];
-    citations: Array<{
-        url: string;
-        quote: string;
-        confidence: number;
-    }>;
-    proposedWrites: KnowledgeUpdate[];
-    gaps?: string[];
-    notes?: string;
-    /** Anything the agent emitted beyond the typed fields. */
-    raw?: unknown;
-}
-/** @experimental */
-interface ResearcherProfileOptions {
-    /** Sandbox-SDK backend.type. Default `'opencode/zai-coding-plan/glm-5.1'`. */
-    harness?: string;
-    /** Default model id passed in `AgentProfile.model.default`. */
-    model?: string;
-    /** Custom system prompt replacement. Default = built-in researcher preset. */
-    systemPrompt?: string;
-    /** Stable name for `AgentRunSpec.name`. Default = `researcher-${harness}`. */
-    name?: string;
-    /**
-     * Default 0.7. Minimum (citations with quote) / items ratio for `valid=true`.
-     * Below this floor, citation_density scores < 1 and the item set is gated.
-     */
-    citationDensityMin?: number;
-}
-/** @experimental */
-declare function researcherProfile(options?: ResearcherProfileOptions & {
-    task?: ResearchTask;
-}): {
-    profile: AgentProfile;
-    taskToPrompt: (task: ResearchTask) => string;
-    output: OutputAdapter<ResearchOutput>;
-    validator: Validator<ResearchOutput>;
-    agentRunSpec: AgentRunSpec<ResearchTask>;
-};
-/** @experimental */
-interface MultiHarnessResearcherFanoutOptions {
-    /** Backend.type identifiers, one per parallel agent. */
-    harnesses?: string[];
-    /** Optional per-harness model override. Indexed parallel to `harnesses`. */
-    models?: (string | undefined)[];
-    /** Default citation density floor for the shared validator. */
-    citationDensityMin?: number;
-    /** Optional task — narrows the validator's namespace check. */
-    task?: ResearchTask;
-}
-/**
- * Build a fanout topology over multiple harnesses. The kernel round-robins
- * `agentRuns` across the N parallel iterations and the `FanoutVote` driver
- * picks the highest-scoring valid output.
- *
- * @experimental
- */
-declare function multiHarnessResearcherFanout(options?: MultiHarnessResearcherFanoutOptions): {
-    agentRuns: AgentRunSpec<ResearchTask>[];
-    output: OutputAdapter<ResearchOutput>;
-    validator: Validator<ResearchOutput>;
-    driver: Driver<ResearchTask, ResearchOutput, 'done'>;
-};
-/**
- * Build a validator that closes over a specific `ResearchTask`'s constraints.
- *
- * Checks in order:
- *   1. Items must be non-empty.
- *   2. Every item carries `evidence.length >= 1`.
- *   3. Every item + proposedWrite is scoped to `task.knowledgeNamespace`
- *      (hard-fail on any namespace mismatch — defence in depth for the
- *      multi-tenant invariant).
- *   4. Citation density (citations with quote / items) >= floor.
- *
- * Aggregate score:
- *   0.4 · citation_density
- * + 0.2 · source_diversity (distinct sources / max(items, 1))
- * + 0.2 · recency_match (mean fraction within `recencyWindow`)
- * + 0.2 · (1 − gaps/maxGaps), maxGaps = max(items, 1)
- *
- * @experimental
- */
-declare function createResearcherValidator(task: ResearchTask, config?: {
-    citationDensityMin?: number;
-    namespaceCheck?: boolean;
-}): Validator<ResearchOutput>;
-
-export { type KnowledgeItem, type KnowledgeUpdate, type MultiHarnessResearcherFanoutOptions, type ResearchOutput, type ResearchSource, type ResearchTask, type ResearcherProfileOptions, createResearcherValidator, multiHarnessResearcherFanout, researcherProfile };

package/dist/profiles/index.js

@@ -1,11 +0,0 @@
-import {
-  createResearcherValidator,
-  multiHarnessResearcherFanout,
-  researcherProfile
-} from "../chunk-MU5CEOGE.js";
-export {
-  createResearcherValidator,
-  multiHarnessResearcherFanout,
-  researcherProfile
-};
-//# sourceMappingURL=index.js.map

package/docs/recursive-research-leaf.md

@@ -1,86 +0,0 @@
-# Skill: spawn a driver-loop as a leaf for a large sub-topic
-
-Supervisor-facing guidance. The `runResearchSupervisor` brain (see
-`src/research-supervisor.ts`) decomposes a goal into sub-topics and spawns one
-researcher per sub-topic over the live `Scope`. By default each spawn is a **bare
-worker**: a single researcher pass that adds sources and proposes pages.
-
-For a **large** sub-topic, a single worker pass under-covers it. The recursive
-move is to spawn, in place of that bare worker, a **driver-loop leaf** — a child
-that is itself a driver running its own worker (the two-agent loop), so the
-sub-topic gets verify + gap-fill + readiness-gate iteration, not one shot.
-
-`agent-runtime`'s `Scope.spawn(agent, task, opts)` makes this a first-class
-recursion: the spawned `Agent` can itself be a driver, not just a worker. The
-supervisor spawns a child `Agent` whose `act(task, childScope)` runs
-`runTwoAgentResearchLoop` (or its own `runResearchSupervisor`) scoped to the
-sub-topic, against the SAME knowledge base root, with a sub-topic-scoped slice of
-readiness specs. The conserved budget pool reserves `opts.budget` for the child
-atomically and refunds the unspent remainder on settle, so a driver-loop leaf
-spends from the same pool a bare worker would have — depth costs budget, not extra
-budget.
-
-## When it's worth it
-
-Spawn a driver-loop leaf (instead of a bare worker) for a sub-topic when ANY of
-these hold; otherwise spawn a bare worker.
-
-| Signal | Bare worker | Driver-loop leaf |
-| --- | --- | --- |
-| **Breadth** — distinct readiness specs the sub-topic must close | 1–2 | 3+ |
-| **Depth** — does a fact need a source THEN a derived claim citing it? | shallow (source ≈ answer) | layered (source → claim → cross-check) |
-| **Expected rounds** — passes to reach no-blocking-gaps for the sub-topic | ~1 | 2+ (a worker's first pass predictably leaves blocking gaps) |
-| **Verification risk** — is a wrong/duplicate source likely and costly here? | low | high (the leaf's driver rejects bad sources before they commit) |
-| **Budget headroom** — iterations/tokens left in the pool for this branch | tight | comfortable (a leaf needs ≥ ~3× a worker's per-pass spend) |
-
-Rule of thumb: **breadth ≥ 3 specs OR expected rounds ≥ 2 OR high verification
-risk ⇒ driver-loop leaf.** A sub-topic that is one fact from one source is a bare
-worker — wrapping it in a driver only burns budget on a loop that stops after
-round 1.
-
-## The shape
-
-```ts
-import type { Agent, Scope } from '@tangle-network/agent-runtime/loops'
-import { runTwoAgentResearchLoop, type TwoAgentResearchLoopResult } from '@tangle-network/agent-knowledge'
-
-// For a LARGE sub-topic, spawn a sub-driver leaf that runs the two-agent loop
-// scoped to that sub-topic. The child shares the KB root and the conserved
-// budget pool; it gets its own driver (verify + fill + gate) instead of a single
-// worker pass. The child is an `Agent` whose `act` IS the two-agent loop.
-const researchLeaf: Agent<typeof subTopic, TwoAgentResearchLoopResult> = {
-  name: `research-leaf:${subTopic.id}`,
-  async act(task, childScope: Scope<TwoAgentResearchLoopResult>) {
-    return runTwoAgentResearchLoop({
-      root, // the SAME knowledge base
-      goal: task.goal,
-      worker, // the sub-topic researcher
-      driver, // verifies the worker's sources, gap-fills, gates on readiness
-      driverResearches: true, // the leaf's driver also researches the missed gaps
-      readinessSpecs: task.specs, // the sub-topic's slice of the gate
-      signal: childScope.signal,
-    })
-  },
-}
-
-// Reserves `budget` from the conserved pool atomically; refunds on settle.
-const spawned = scope.spawn(researchLeaf, subTopic, {
-  label: `research-leaf:${subTopic.id}`,
-  budget: perSubTopicBudget, // a slice of the conserved pool
-})
-if (!spawned.ok) {
-  // fail-closed: 'budget-exhausted' | 'depth-exceeded' — spawn a bare worker or stop.
-}
-```
-
-A bare worker, by contrast, is `scope.spawn(workerFromBackend(backend)(...), …)`
-of the researcher profile — no inner driver, no per-sub-topic readiness gate, one
-pass.
-
-## Why this is a leaf, not a fork
-
-The driver-loop leaf is still ONE branch of the supervisor's tree. It reads and
-writes the same knowledge base, settles back through the same `Scope`, and
-spends from the same budget pool. The recursion is depth (a sub-driver inside a
-branch), not a second knowledge base — there is exactly one KB, and the
-supervisor's readiness gate over the whole KB is still what ends the run.