@tangle-network/agent-knowledge 1.1.1 → 1.3.0

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Files changed (24) hide show
  1. package/AGENTS.md +36 -0
  2. package/README.md +182 -0
  3. package/dist/{chunk-TXNYP4WI.js → chunk-4PNXQ2NT.js} +1 -1
  4. package/dist/chunk-4PNXQ2NT.js.map +1 -0
  5. package/dist/{chunk-JWGMOXAT.js → chunk-HKYD765Q.js} +599 -427
  6. package/dist/chunk-HKYD765Q.js.map +1 -0
  7. package/dist/chunk-WCYW2GDA.js +551 -0
  8. package/dist/chunk-WCYW2GDA.js.map +1 -0
  9. package/dist/chunk-YMKHCTS2.js +19 -0
  10. package/dist/chunk-YMKHCTS2.js.map +1 -0
  11. package/dist/cli.js +77 -34
  12. package/dist/cli.js.map +1 -1
  13. package/dist/index.d.ts +705 -263
  14. package/dist/index.js +771 -167
  15. package/dist/index.js.map +1 -1
  16. package/dist/sources/index.d.ts +386 -0
  17. package/dist/sources/index.js +34 -0
  18. package/dist/sources/index.js.map +1 -0
  19. package/dist/{types-YkFkfwJG.d.ts → types-CAeh7Lwb.d.ts} +2 -2
  20. package/dist/viz/index.d.ts +1 -1
  21. package/dist/viz/index.js +1 -1
  22. package/package.json +11 -3
  23. package/dist/chunk-JWGMOXAT.js.map +0 -1
  24. package/dist/chunk-TXNYP4WI.js.map +0 -1
package/dist/chunk-JWGMOXAT.js.map DELETED
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- {"version":3,"sources":["../src/ids.ts","../src/frontmatter.ts","../src/wikilinks.ts","../src/write-protocol.ts","../src/adapters.ts","../src/proposals.ts","../src/schemas.ts","../src/graph.ts","../src/store.ts","../src/sources.ts","../src/search.ts","../src/indexer.ts","../src/lint.ts","../src/inspect.ts","../src/validate.ts"],"sourcesContent":["import { createHash } from 'node:crypto'\n\nexport function sha256(text: string): string {\n return createHash('sha256').update(text).digest('hex')\n}\n\nexport function slugify(input: string): string {\n const out = input\n .trim()\n .toLowerCase()\n .normalize('NFKD')\n .replace(/[\\u0300-\\u036f]/g, '')\n .replace(/[^a-z0-9\\u4e00-\\u9fff]+/g, '-')\n .replace(/^-+|-+$/g, '')\n return out || 'untitled'\n}\n\nexport function stableId(prefix: string, content: string): string {\n return `${prefix}_${sha256(content).slice(0, 16)}`\n}\n","export interface ParsedFrontmatter {\n frontmatter: Record<string, unknown>\n body: string\n}\n\nexport function parseFrontmatter(content: string): ParsedFrontmatter {\n const normalized = content.replace(/\\r\\n/g, '\\n')\n if (!normalized.startsWith('---\\n')) return { frontmatter: {}, body: normalized }\n const end = normalized.indexOf('\\n---', 4)\n if (end < 0) return { frontmatter: {}, body: normalized }\n const raw = normalized.slice(4, end)\n const after = normalized.slice(end).replace(/^\\n---\\s*\\n?/, '')\n return { frontmatter: parseSimpleYaml(raw), body: after }\n}\n\nexport function formatFrontmatter(frontmatter: Record<string, unknown>, body: string): string {\n const lines = Object.entries(frontmatter)\n .filter(([, value]) => value !== undefined)\n .flatMap(([key, value]) => formatYamlField(key, value))\n if (lines.length === 0) return body\n return `---\\n${lines.join('\\n')}\\n---\\n${body.replace(/^\\n+/, '')}`\n}\n\nfunction parseSimpleYaml(raw: string): Record<string, unknown> {\n const out: Record<string, unknown> = {}\n const lines = raw.split('\\n')\n for (let i = 0; i < lines.length; i++) {\n const line = lines[i]!\n const scalar = /^([A-Za-z0-9_-]+):\\s*(.*)$/.exec(line)\n if (!scalar) continue\n const key = scalar[1]!\n const rest = scalar[2]!.trim()\n if (rest === '') {\n const items: string[] = []\n while (i + 1 < lines.length) {\n const item = /^\\s*-\\s*(.+?)\\s*$/.exec(lines[i + 1]!)\n if (!item) break\n items.push(unquote(item[1]!))\n i++\n }\n out[key] = items\n continue\n }\n if (rest.startsWith('[') && rest.endsWith(']')) {\n out[key] = rest.slice(1, -1).split(',').map((part) => unquote(part.trim())).filter(Boolean)\n } else if (rest === 'true' || rest === 'false') {\n out[key] = rest === 'true'\n } else if (/^-?\\d+(?:\\.\\d+)?$/.test(rest)) {\n out[key] = Number(rest)\n } else {\n out[key] = unquote(rest)\n }\n }\n return out\n}\n\nfunction formatYamlField(key: string, value: unknown): string[] {\n if (Array.isArray(value)) {\n return [key + ':', ...value.map((item) => ` - ${String(item)}`)]\n }\n if (typeof value === 'string') return [`${key}: ${value}`]\n if (typeof value === 'number' || typeof value === 'boolean') return [`${key}: ${String(value)}`]\n return [`${key}: ${JSON.stringify(value)}`]\n}\n\nfunction unquote(value: string): string {\n return value.replace(/^['\"]|['\"]$/g, '')\n}\n","export const WIKILINK_REGEX = /\\[\\[([^\\]|]+?)(?:\\|[^\\]]+?)?\\]\\]/g\n\nexport function extractWikilinks(content: string): string[] {\n const links: string[] = []\n const regex = new RegExp(WIKILINK_REGEX.source, 'g')\n let match: RegExpExecArray | null\n while ((match = regex.exec(content)) !== null) {\n links.push(match[1]!.trim())\n }\n return [...new Set(links)]\n}\n\nexport function normalizeLinkTarget(target: string): string {\n return target.trim().replace(/\\.md$/i, '').toLowerCase().replace(/\\s+/g, '-')\n}\n","import type { KnowledgeWriteParseResult } from './types'\n\nconst OPENER_LINE = /^---\\s*FILE:\\s*(.+?)\\s*---\\s*$/i\nconst CLOSER_LINE = /^---\\s*END\\s+FILE\\s*---\\s*$/i\nconst FENCE_LINE = /^\\s{0,3}(```+|~~~+)/\n\nexport function isSafeKnowledgePath(path: string, allowedPrefixes = ['knowledge/']): boolean {\n if (typeof path !== 'string' || path.trim() === '') return false\n if (/[\\x00-\\x1f]/.test(path)) return false\n if (path.startsWith('/') || path.startsWith('\\\\')) return false\n if (/^[a-zA-Z]:/.test(path)) return false\n const normalized = path.replace(/\\\\/g, '/')\n if (normalized.split('/').some((part) => part === '..')) return false\n return allowedPrefixes.some((prefix) => normalized.startsWith(prefix))\n}\n\nexport function parseKnowledgeWriteBlocks(text: string, allowedPrefixes = ['knowledge/']): KnowledgeWriteParseResult {\n const lines = text.replace(/\\r\\n/g, '\\n').split('\\n')\n const blocks: KnowledgeWriteParseResult['blocks'] = []\n const warnings: string[] = []\n let i = 0\n\n while (i < lines.length) {\n const opener = OPENER_LINE.exec(lines[i]!)\n if (!opener) {\n i++\n continue\n }\n const path = opener[1]!.trim()\n i++\n const contentLines: string[] = []\n let fenceMarker: string | null = null\n let fenceLen = 0\n let closed = false\n\n while (i < lines.length) {\n const line = lines[i]!\n const fence = FENCE_LINE.exec(line)\n if (fence) {\n const run = fence[1]!\n const char = run[0]!\n if (fenceMarker === null) {\n fenceMarker = char\n fenceLen = run.length\n } else if (char === fenceMarker && run.length >= fenceLen) {\n fenceMarker = null\n fenceLen = 0\n }\n contentLines.push(line)\n i++\n continue\n }\n if (fenceMarker === null && CLOSER_LINE.test(line)) {\n closed = true\n i++\n break\n }\n contentLines.push(line)\n i++\n }\n\n if (!closed) {\n warnings.push(`FILE block \"${path || '(empty)'}\" was not closed before end of stream.`)\n continue\n }\n if (!isSafeKnowledgePath(path, allowedPrefixes)) {\n warnings.push(`FILE block with unsafe path \"${path}\" rejected.`)\n continue\n }\n blocks.push({ path, content: contentLines.join('\\n') })\n }\n\n return { blocks, warnings }\n}\n","import type { SourceRecord } from './types'\n\nexport interface SourceAdapterInput {\n uri: string\n bytes?: Uint8Array\n text?: string\n metadata?: Record<string, unknown>\n}\n\nexport interface SourceAdapterOutput {\n title?: string\n mediaType?: string\n text?: string\n anchors?: SourceRecord['anchors']\n metadata?: Record<string, unknown>\n}\n\nexport interface SourceAdapter {\n id: string\n canLoad(input: SourceAdapterInput): boolean\n load(input: SourceAdapterInput): Promise<SourceAdapterOutput> | SourceAdapterOutput\n}\n\nexport const textSourceAdapter: SourceAdapter = {\n id: 'text',\n canLoad: (input) => Boolean(input.text) || /\\.(md|txt|json|csv)$/i.test(input.uri),\n load: (input) => ({\n title: input.uri.split('/').pop(),\n mediaType: mediaTypeFor(input.uri),\n text: decodeText(input),\n anchors: anchorsForText(input.uri, decodeText(input)),\n metadata: input.metadata,\n }),\n}\n\nexport function mediaTypeFor(uri: string): string {\n const lower = uri.toLowerCase()\n if (lower.endsWith('.md')) return 'text/markdown'\n if (lower.endsWith('.txt')) return 'text/plain'\n if (lower.endsWith('.json')) return 'application/json'\n if (lower.endsWith('.csv')) return 'text/csv'\n if (lower.endsWith('.pdf')) return 'application/pdf'\n return 'application/octet-stream'\n}\n\nfunction decodeText(input: SourceAdapterInput): string | undefined {\n return input.text ?? (input.bytes ? new TextDecoder().decode(input.bytes).slice(0, 200_000) : undefined)\n}\n\nfunction anchorsForText(uri: string, text: string | undefined): SourceAdapterOutput['anchors'] {\n if (!text) return []\n const lines = text.split('\\n')\n const anchors: NonNullable<SourceAdapterOutput['anchors']> = [{ id: 'all', sourceId: '', label: 'Full source', lineStart: 1, lineEnd: lines.length }]\n for (let i = 0; i < lines.length; i += 50) {\n anchors.push({\n id: `l${i + 1}`,\n sourceId: '',\n label: `${uri}:${i + 1}`,\n lineStart: i + 1,\n lineEnd: Math.min(lines.length, i + 50),\n })\n }\n return anchors\n}\n","import { mkdir, readFile, writeFile } from 'node:fs/promises'\nimport { dirname, join } from 'node:path'\nimport { parseKnowledgeWriteBlocks } from './write-protocol'\n\nexport interface ApplyWriteBlocksResult {\n written: string[]\n warnings: string[]\n}\n\nexport async function applyKnowledgeWriteBlocks(\n root: string,\n proposalText: string,\n): Promise<ApplyWriteBlocksResult> {\n const parsed = parseKnowledgeWriteBlocks(proposalText)\n const written: string[] = []\n for (const block of parsed.blocks) {\n const path = join(root, block.path)\n await mkdir(dirname(path), { recursive: true })\n await writeFile(path, block.content.endsWith('\\n') ? block.content : `${block.content}\\n`, 'utf8')\n written.push(block.path)\n }\n return { written, warnings: parsed.warnings }\n}\n\nexport async function applyKnowledgeWriteBlocksFile(root: string, proposalPath: string): Promise<ApplyWriteBlocksResult> {\n return applyKnowledgeWriteBlocks(root, await readFile(proposalPath, 'utf8'))\n}\n","import { z } from 'zod'\n\nexport const SourceAnchorSchema = z.object({\n id: z.string().min(1),\n sourceId: z.string().min(1),\n label: z.string().optional(),\n page: z.number().int().positive().optional(),\n lineStart: z.number().int().positive().optional(),\n lineEnd: z.number().int().positive().optional(),\n charStart: z.number().int().nonnegative().optional(),\n charEnd: z.number().int().nonnegative().optional(),\n timestampMs: z.number().nonnegative().optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n})\n\nexport const SourceRecordSchema = z.object({\n id: z.string().min(1),\n uri: z.string().min(1),\n title: z.string().optional(),\n mediaType: z.string().optional(),\n contentHash: z.string().min(16),\n text: z.string().optional(),\n anchors: z.array(SourceAnchorSchema).optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n createdAt: z.string().min(1),\n})\n\nexport const KnowledgePageSchema = z.object({\n id: z.string().min(1),\n path: z.string().min(1),\n title: z.string().min(1),\n text: z.string(),\n frontmatter: z.record(z.string(), z.unknown()),\n sourceIds: z.array(z.string()),\n tags: z.array(z.string()),\n outLinks: z.array(z.string()),\n})\n\nexport const KnowledgeGraphNodeSchema = z.object({\n id: z.string(),\n title: z.string(),\n path: z.string(),\n tags: z.array(z.string()),\n sourceIds: z.array(z.string()),\n outDegree: z.number().int().nonnegative(),\n inDegree: z.number().int().nonnegative(),\n})\n\nexport const KnowledgeGraphEdgeSchema = z.object({\n source: z.string(),\n target: z.string(),\n weight: z.number(),\n reasons: z.array(z.string()),\n})\n\nexport const KnowledgeIndexSchema = z.object({\n root: z.string(),\n generatedAt: z.string(),\n sources: z.array(SourceRecordSchema),\n pages: z.array(KnowledgePageSchema),\n graph: z.object({\n nodes: z.array(KnowledgeGraphNodeSchema),\n edges: z.array(KnowledgeGraphEdgeSchema),\n }),\n})\n\nexport const KnowledgeEventSchema = z.object({\n id: z.string().min(1),\n type: z.enum(['source.added', 'proposal.applied', 'index.built', 'lint.run', 'optimization.run', 'release.promoted', 'release.rejected']),\n createdAt: z.string().min(1),\n actor: z.string().optional(),\n target: z.string().optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n})\n\nexport const KnowledgeBaseCandidateSchema = z.object({\n id: z.string().min(1),\n units: z.array(z.object({\n id: z.string().min(1),\n title: z.string().min(1),\n text: z.string(),\n claims: z.array(z.object({\n id: z.string().min(1),\n text: z.string().min(1),\n refs: z.array(z.object({\n sourceId: z.string().min(1),\n anchorId: z.string().optional(),\n quote: z.string().optional(),\n })),\n confidence: z.number().min(0).max(1).optional(),\n status: z.enum(['draft', 'active', 'superseded', 'rejected']).optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n })).optional(),\n relations: z.array(z.object({\n sourceId: z.string(),\n targetId: z.string(),\n predicate: z.string(),\n weight: z.number().optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n })).optional(),\n sourceIds: z.array(z.string()).optional(),\n tags: z.array(z.string()).optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n updatedAt: z.string().optional(),\n })),\n retrievalPolicy: z.string().optional(),\n synthesisPolicy: z.string().optional(),\n questionPolicy: z.string().optional(),\n updatePolicy: z.string().optional(),\n metadata: z.record(z.string(), z.unknown()).optional(),\n})\n","import type { KnowledgeGraph, KnowledgeGraphEdge, KnowledgeGraphNode, KnowledgePage } from './types'\nimport { normalizeLinkTarget } from './wikilinks'\n\nexport function buildKnowledgeGraph(pages: KnowledgePage[]): KnowledgeGraph {\n const byId = new Map<string, KnowledgePage>()\n const bySlug = new Map<string, KnowledgePage>()\n for (const page of pages) {\n byId.set(page.id, page)\n bySlug.set(normalizeLinkTarget(page.id), page)\n bySlug.set(normalizeLinkTarget(page.title), page)\n bySlug.set(normalizeLinkTarget(page.path.split('/').pop()!.replace(/\\.md$/, '')), page)\n }\n\n const incoming = new Map<string, number>()\n const outgoing = new Map<string, number>()\n const edgesByKey = new Map<string, KnowledgeGraphEdge>()\n for (const page of pages) {\n outgoing.set(page.id, 0)\n incoming.set(page.id, 0)\n }\n\n for (const page of pages) {\n for (const raw of page.outLinks) {\n const target = bySlug.get(normalizeLinkTarget(raw))\n if (!target || target.id === page.id) continue\n const key = `${page.id}->${target.id}`\n const edge = edgesByKey.get(key)\n if (edge) edge.weight += 1\n else edgesByKey.set(key, { source: page.id, target: target.id, weight: 1, reasons: ['wikilink'] })\n outgoing.set(page.id, (outgoing.get(page.id) ?? 0) + 1)\n incoming.set(target.id, (incoming.get(target.id) ?? 0) + 1)\n }\n }\n\n addSourceOverlapEdges(pages, edgesByKey)\n\n const nodes: KnowledgeGraphNode[] = pages.map((page) => ({\n id: page.id,\n title: page.title,\n path: page.path,\n tags: page.tags,\n sourceIds: page.sourceIds,\n outDegree: outgoing.get(page.id) ?? 0,\n inDegree: incoming.get(page.id) ?? 0,\n }))\n return { nodes, edges: [...edgesByKey.values()].sort((a, b) => b.weight - a.weight) }\n}\n\nfunction addSourceOverlapEdges(pages: KnowledgePage[], edges: Map<string, KnowledgeGraphEdge>): void {\n for (let i = 0; i < pages.length; i++) {\n for (let j = i + 1; j < pages.length; j++) {\n const a = pages[i]!\n const b = pages[j]!\n const overlap = a.sourceIds.filter((source) => b.sourceIds.includes(source))\n if (overlap.length === 0) continue\n const key = `${a.id}->${b.id}`\n const edge = edges.get(key)\n if (edge) {\n edge.weight += overlap.length * 0.5\n edge.reasons.push('shared-source')\n } else {\n edges.set(key, {\n source: a.id,\n target: b.id,\n weight: overlap.length * 0.5,\n reasons: ['shared-source'],\n })\n }\n }\n }\n}\n","import { mkdir, readFile, readdir, stat, writeFile } from 'node:fs/promises'\nimport { dirname, join, relative } from 'node:path'\nimport type { KnowledgePage } from './types'\nimport { parseFrontmatter } from './frontmatter'\nimport { slugify } from './ids'\nimport { extractWikilinks, normalizeLinkTarget } from './wikilinks'\n\nexport interface KnowledgeLayout {\n root: string\n knowledgeDir: string\n rawSourcesDir: string\n sourceRegistryPath: string\n indexPath: string\n logPath: string\n cacheDir: string\n}\n\nexport function layoutFor(root: string): KnowledgeLayout {\n return {\n root,\n knowledgeDir: join(root, 'knowledge'),\n rawSourcesDir: join(root, 'raw', 'sources'),\n sourceRegistryPath: join(root, '.agent-knowledge', 'sources.json'),\n indexPath: join(root, 'knowledge', 'index.md'),\n logPath: join(root, 'knowledge', 'log.md'),\n cacheDir: join(root, '.agent-knowledge'),\n }\n}\n\n/**\n * Filenames that `initKnowledgeBase` writes as human-navigation scaffolding.\n * These are excluded from the page index — they exist on disk so authors can\n * curate their vault, but they are not searchable content.\n *\n * Add new scaffold filenames here (and only here) to keep lint, validate, viz,\n * and the indexer consistent.\n */\nexport const SCAFFOLD_PAGE_BASENAMES: readonly string[] = ['index.md', 'log.md']\n\n/**\n * True when a knowledge-relative path points at a scaffold file rather than\n * authored content. Accepts both repo-relative paths (`knowledge/index.md`)\n * and any nested `<dir>/index.md` or `<dir>/log.md` (for example\n * `knowledge/concepts/index.md`) so subdirectory README-style scaffolds are\n * also excluded.\n */\nexport function isScaffoldPath(path: string): boolean {\n const normalized = path.replace(/\\\\/g, '/')\n for (const basename of SCAFFOLD_PAGE_BASENAMES) {\n if (normalized === `knowledge/${basename}`) return true\n if (normalized.endsWith(`/${basename}`)) return true\n }\n return false\n}\n\nexport async function initKnowledgeBase(root: string): Promise<KnowledgeLayout> {\n const layout = layoutFor(root)\n await mkdir(layout.knowledgeDir, { recursive: true })\n await mkdir(layout.rawSourcesDir, { recursive: true })\n await mkdir(layout.cacheDir, { recursive: true })\n await writeIfMissing(layout.indexPath, '# Knowledge Index\\n\\n')\n await writeIfMissing(layout.logPath, '# Knowledge Log\\n\\n')\n await writeIfMissing(layout.sourceRegistryPath, '{\\n \"generatedAt\": \"1970-01-01T00:00:00.000Z\",\\n \"sources\": []\\n}\\n')\n return layout\n}\n\nexport async function loadKnowledgePages(root: string): Promise<KnowledgePage[]> {\n const layout = layoutFor(root)\n const files = await listMarkdownFiles(layout.knowledgeDir)\n const pages: KnowledgePage[] = []\n for (const file of files) {\n const rel = relative(root, file).replace(/\\\\/g, '/')\n if (isScaffoldPath(rel)) continue\n const content = await readFile(file, 'utf8')\n const { frontmatter, body } = parseFrontmatter(content)\n const title = stringField(frontmatter.title) ?? firstHeading(body) ?? rel.split('/').pop()!.replace(/\\.md$/, '')\n const sourceIds = arrayField(frontmatter.sources)\n const tags = arrayField(frontmatter.tags)\n pages.push({\n id: stringField(frontmatter.id) ?? slugify(rel.replace(/^knowledge\\//, '').replace(/\\.md$/, '')),\n path: rel,\n title,\n text: body,\n frontmatter,\n sourceIds,\n tags,\n outLinks: extractWikilinks(body).map(normalizeLinkTarget),\n })\n }\n pages.sort((a, b) => a.path.localeCompare(b.path))\n return pages\n}\n\nexport async function writeJson(path: string, value: unknown): Promise<void> {\n await mkdir(dirname(path), { recursive: true })\n await writeFile(path, JSON.stringify(value, null, 2) + '\\n', 'utf8')\n}\n\nasync function writeIfMissing(path: string, content: string): Promise<void> {\n try {\n await stat(path)\n } catch {\n await mkdir(dirname(path), { recursive: true })\n await writeFile(path, content, 'utf8')\n }\n}\n\nasync function listMarkdownFiles(root: string): Promise<string[]> {\n try {\n const entries = await readdir(root, { withFileTypes: true })\n const out: string[] = []\n for (const entry of entries) {\n const full = join(root, entry.name)\n if (entry.isDirectory()) out.push(...await listMarkdownFiles(full))\n else if (entry.isFile() && entry.name.endsWith('.md')) out.push(full)\n }\n return out\n } catch {\n return []\n }\n}\n\nfunction stringField(value: unknown): string | undefined {\n return typeof value === 'string' && value.trim() !== '' ? value.trim() : undefined\n}\n\nfunction arrayField(value: unknown): string[] {\n return Array.isArray(value) ? value.filter((item): item is string => typeof item === 'string') : []\n}\n\nfunction firstHeading(body: string): string | undefined {\n return /^#\\s+(.+)$/m.exec(body)?.[1]?.trim()\n}\n","import { copyFile, mkdir, readFile, readdir, stat, writeFile } from 'node:fs/promises'\nimport { basename, dirname, join, relative } from 'node:path'\nimport { textSourceAdapter, type SourceAdapter } from './adapters'\nimport type { SourceRecord, SourceRegistry } from './types'\nimport { sha256, slugify, stableId } from './ids'\nimport { layoutFor } from './store'\n\nexport interface AddSourceOptions {\n copyIntoRaw?: boolean\n adapters?: SourceAdapter[]\n now?: () => Date\n}\n\nexport async function loadSourceRegistry(root: string): Promise<SourceRegistry> {\n const path = sourceRegistryPath(root)\n try {\n const parsed = JSON.parse(await readFile(path, 'utf8')) as SourceRegistry\n return {\n generatedAt: typeof parsed.generatedAt === 'string' ? parsed.generatedAt : new Date(0).toISOString(),\n sources: Array.isArray(parsed.sources) ? parsed.sources : [],\n }\n } catch {\n return { generatedAt: new Date(0).toISOString(), sources: [] }\n }\n}\n\nexport async function writeSourceRegistry(root: string, registry: SourceRegistry): Promise<void> {\n const path = sourceRegistryPath(root)\n await mkdir(dirname(path), { recursive: true })\n await writeFile(path, JSON.stringify(registry, null, 2) + '\\n', 'utf8')\n}\n\nexport async function addSourcePath(root: string, sourcePath: string, options: AddSourceOptions = {}): Promise<SourceRecord[]> {\n const s = await stat(sourcePath)\n if (s.isDirectory()) {\n const out: SourceRecord[] = []\n for (const file of await listFiles(sourcePath)) {\n out.push(...await addSourcePath(root, file, options))\n }\n return out\n }\n\n const layout = layoutFor(root)\n await mkdir(layout.rawSourcesDir, { recursive: true })\n const bytes = await readFile(sourcePath)\n const contentHash = sha256(bytes.toString('base64'))\n const fileName = basename(sourcePath)\n const adapters = options.adapters ?? [textSourceAdapter]\n const adapter = adapters.find((candidate) => candidate.canLoad({ uri: sourcePath, bytes }))\n const loaded = adapter ? await adapter.load({ uri: sourcePath, bytes }) : {}\n const id = stableId('src', `${contentHash}:${fileName}`)\n const targetRel = join('raw', 'sources', `${slugify(fileName.replace(/\\.[^.]+$/, ''))}-${contentHash.slice(0, 8)}${ext(fileName)}`).replace(/\\\\/g, '/')\n const targetAbs = join(root, targetRel)\n\n if (options.copyIntoRaw ?? true) {\n await mkdir(dirname(targetAbs), { recursive: true })\n await copyFile(sourcePath, targetAbs)\n }\n\n const existing = await loadSourceRegistry(root)\n const record: SourceRecord = {\n id,\n uri: targetRel,\n title: loaded.title ?? fileName,\n mediaType: loaded.mediaType ?? mediaTypeFor(fileName),\n contentHash,\n text: loaded.text ?? textPreview(fileName, bytes),\n anchors: (loaded.anchors ?? []).map((anchor) => ({ ...anchor, sourceId: id })),\n createdAt: (options.now ?? (() => new Date()))().toISOString(),\n metadata: {\n ...(loaded.metadata ?? {}),\n originalPath: sourcePath,\n sizeBytes: bytes.length,\n projectRelativePath: relative(root, sourcePath).replace(/\\\\/g, '/'),\n },\n }\n const next: SourceRegistry = {\n generatedAt: new Date().toISOString(),\n sources: [record, ...existing.sources.filter((source) => source.id !== id)],\n }\n await writeSourceRegistry(root, next)\n return [record]\n}\n\nexport function sourceRegistryPath(root: string): string {\n return join(layoutFor(root).cacheDir, 'sources.json')\n}\n\nasync function listFiles(root: string): Promise<string[]> {\n const entries = await readdir(root, { withFileTypes: true })\n const out: string[] = []\n for (const entry of entries) {\n const full = join(root, entry.name)\n if (entry.isDirectory()) out.push(...await listFiles(full))\n else if (entry.isFile()) out.push(full)\n }\n return out\n}\n\nfunction ext(fileName: string): string {\n const idx = fileName.lastIndexOf('.')\n return idx >= 0 ? fileName.slice(idx) : ''\n}\n\nfunction mediaTypeFor(fileName: string): string {\n const lower = fileName.toLowerCase()\n if (lower.endsWith('.md')) return 'text/markdown'\n if (lower.endsWith('.txt')) return 'text/plain'\n if (lower.endsWith('.json')) return 'application/json'\n if (lower.endsWith('.csv')) return 'text/csv'\n if (lower.endsWith('.pdf')) return 'application/pdf'\n return 'application/octet-stream'\n}\n\nfunction textPreview(fileName: string, bytes: Buffer): string | undefined {\n const mediaType = mediaTypeFor(fileName)\n if (!mediaType.startsWith('text/') && mediaType !== 'application/json') return undefined\n return bytes.toString('utf8').slice(0, 200_000)\n}\n","import type { KnowledgeIndex, KnowledgePage, KnowledgeSearchResult } from './types'\n\nconst RRF_K = 60\nconst STOP_WORDS = new Set(['the', 'is', 'a', 'an', 'what', 'how', 'are', 'was', 'were', 'to', 'for', 'of', 'with', 'by', 'in', 'on', 'and'])\n\nexport function searchKnowledge(index: KnowledgeIndex, query: string, limit = 10): KnowledgeSearchResult[] {\n const trimmed = query.trim()\n if (trimmed === '') return []\n const tokenRanked = rankByTokens(index.pages, trimmed)\n const graphRanked = rankByGraph(index.pages, tokenRanked)\n const scores = reciprocalRankFusion([tokenRanked.map((p) => p.id), graphRanked.map((p) => p.id)])\n const byId = new Map(index.pages.map((page) => [page.id, page]))\n\n const ranked = [...scores.entries()]\n .map(([id, score]) => ({ page: byId.get(id), score }))\n .filter((item): item is { page: KnowledgePage; score: number } => Boolean(item.page))\n .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n .slice(0, limit)\n\n // Normalize against the top hit so callers can compare against natural\n // [0, 1] thresholds. Raw RRF values are typically ~0.016, which reads as\n // \"no relevance\" to humans even when the result is the best available.\n // The top hit becomes 1 by definition; lower-ranked hits scale linearly.\n const topScore = ranked[0]?.score ?? 0\n\n return ranked.map((item, i) => ({\n page: item.page,\n score: item.score,\n rrfScore: item.score,\n normalizedScore: topScore > 0 ? item.score / topScore : 0,\n rank: i + 1,\n snippet: buildSnippet(item.page.text, trimmed),\n reasons: reasonsFor(item.page, trimmed),\n }))\n}\n\nexport function tokenizeQuery(query: string): string[] {\n const raw = query\n .toLowerCase()\n .split(/[\\s,，。！？、；：\"\"''（）()\\-_/\\\\·~～…]+/)\n .filter((token) => token.length > 1 && !STOP_WORDS.has(token))\n const tokens: string[] = []\n for (const token of raw) {\n if (/[\\u4e00-\\u9fff\\u3400-\\u4dbf]/.test(token) && token.length > 2) {\n const chars = [...token]\n for (let i = 0; i < chars.length - 1; i++) tokens.push(chars[i]! + chars[i + 1]!)\n tokens.push(...chars)\n }\n tokens.push(token)\n }\n return [...new Set(tokens)]\n}\n\nexport function reciprocalRankFusion(rankLists: string[][], k = RRF_K): Map<string, number> {\n const scores = new Map<string, number>()\n for (const list of rankLists) {\n list.forEach((id, idx) => {\n scores.set(id, (scores.get(id) ?? 0) + 1 / (k + idx + 1))\n })\n }\n return scores\n}\n\nfunction rankByTokens(pages: KnowledgePage[], query: string): KnowledgePage[] {\n const tokens = tokenizeQuery(query)\n const effective = tokens.length > 0 ? tokens : [query.toLowerCase()]\n return pages\n .map((page) => ({ page, score: tokenScore(page, query, effective) }))\n .filter((item) => item.score > 0)\n .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n .map((item) => item.page)\n}\n\nfunction rankByGraph(pages: KnowledgePage[], tokenRanked: KnowledgePage[]): KnowledgePage[] {\n if (tokenRanked.length === 0) return []\n const seeds = new Set(tokenRanked.slice(0, 5).map((page) => page.id))\n return pages\n .map((page) => ({\n page,\n score: page.outLinks.filter((link) => seeds.has(link)).length + page.sourceIds.filter((source) => tokenRanked.some((seed) => seed.sourceIds.includes(source))).length,\n }))\n .filter((item) => item.score > 0)\n .sort((a, b) => b.score - a.score || a.page.path.localeCompare(b.page.path))\n .map((item) => item.page)\n}\n\nfunction tokenScore(page: KnowledgePage, query: string, tokens: string[]): number {\n const title = page.title.toLowerCase()\n const path = page.path.toLowerCase()\n const body = page.text.toLowerCase()\n const phrase = query.toLowerCase()\n let score = 0\n if (path.endsWith(`${phrase}.md`) || title === phrase) score += 200\n if (title.includes(phrase)) score += 50\n if (body.includes(phrase)) score += 20\n for (const token of tokens) {\n if (title.includes(token)) score += 5\n if (body.includes(token)) score += 1\n if (path.includes(token)) score += 3\n }\n return score\n}\n\nfunction buildSnippet(text: string, query: string): string {\n const compact = text.replace(/\\s+/g, ' ').trim()\n const idx = compact.toLowerCase().indexOf(query.toLowerCase())\n if (idx < 0) return compact.slice(0, 180)\n return compact.slice(Math.max(0, idx - 80), Math.min(compact.length, idx + query.length + 100))\n}\n\nfunction reasonsFor(page: KnowledgePage, query: string): string[] {\n const lower = `${page.title}\\n${page.text}`.toLowerCase()\n const reasons: string[] = []\n if (lower.includes(query.toLowerCase())) reasons.push('phrase')\n if (page.sourceIds.length > 0) reasons.push('sourced')\n if (page.outLinks.length > 0) reasons.push('linked')\n return reasons\n}\n","import { join } from 'node:path'\nimport type { KnowledgeIndex } from './types'\nimport { buildKnowledgeGraph } from './graph'\nimport { loadSourceRegistry } from './sources'\nimport { layoutFor, loadKnowledgePages, writeJson } from './store'\n\nexport async function buildKnowledgeIndex(root: string): Promise<KnowledgeIndex> {\n const [pages, sourceRegistry] = await Promise.all([\n loadKnowledgePages(root),\n loadSourceRegistry(root),\n ])\n const index: KnowledgeIndex = {\n root,\n generatedAt: new Date().toISOString(),\n sources: sourceRegistry.sources,\n pages,\n graph: buildKnowledgeGraph(pages),\n }\n return index\n}\n\nexport async function writeKnowledgeIndex(root: string): Promise<KnowledgeIndex> {\n const index = await buildKnowledgeIndex(root)\n await writeJson(join(layoutFor(root).cacheDir, 'index.json'), index)\n return index\n}\n","import type { KnowledgeIndex, KnowledgeLintFinding } from './types'\nimport { normalizeLinkTarget } from './wikilinks'\n\nexport function lintKnowledgeIndex(index: KnowledgeIndex): KnowledgeLintFinding[] {\n const findings: KnowledgeLintFinding[] = []\n const byTarget = new Set<string>()\n const titles = new Map<string, string[]>()\n const sourceIds = new Set(index.sources.map((source) => source.id))\n const anchorIds = new Map(index.sources.map((source) => [source.id, new Set((source.anchors ?? []).map((anchor) => anchor.id))]))\n const pageIds = new Map<string, string[]>()\n const sourceHashes = new Map<string, string[]>()\n for (const page of index.pages) {\n pageIds.set(page.id, [...(pageIds.get(page.id) ?? []), page.path])\n byTarget.add(normalizeLinkTarget(page.id))\n byTarget.add(normalizeLinkTarget(page.title))\n byTarget.add(normalizeLinkTarget(page.path.split('/').pop()!.replace(/\\.md$/, '')))\n const titleKey = page.title.toLowerCase()\n titles.set(titleKey, [...(titles.get(titleKey) ?? []), page.path])\n }\n for (const source of index.sources) {\n sourceHashes.set(source.contentHash, [...(sourceHashes.get(source.contentHash) ?? []), source.id])\n }\n\n const inbound = new Map<string, number>()\n for (const page of index.pages) inbound.set(page.id, 0)\n for (const page of index.pages) {\n if (page.outLinks.length === 0 && !isStructural(page.path)) {\n findings.push({ type: 'no-outlinks', severity: 'info', page: page.path, message: 'Page has no wikilinks to other knowledge pages.' })\n }\n for (const link of page.outLinks) {\n if (!byTarget.has(normalizeLinkTarget(link))) {\n findings.push({ type: 'broken-link', severity: 'warning', page: page.path, message: `Broken wikilink [[${link}]].` })\n }\n }\n }\n\n for (const edge of index.graph.edges) inbound.set(edge.target, (inbound.get(edge.target) ?? 0) + 1)\n for (const page of index.pages) {\n if (!isStructural(page.path) && (inbound.get(page.id) ?? 0) === 0) {\n findings.push({ type: 'orphan', severity: 'info', page: page.path, message: 'No other page links to this page.' })\n }\n if (/\\bclaim\\b/i.test(page.text) && page.sourceIds.length === 0) {\n findings.push({ type: 'uncited-claim', severity: 'warning', page: page.path, message: 'Page appears to contain claims but has no sources frontmatter.' })\n }\n for (const sourceId of page.sourceIds) {\n if (!sourceIds.has(sourceId)) {\n findings.push({ type: 'missing-source', severity: 'error', page: page.path, message: `Page cites unknown source \"${sourceId}\".`, metadata: { sourceId } })\n }\n }\n for (const ref of extractSourceRefs(page.text)) {\n if (!sourceIds.has(ref.sourceId)) {\n findings.push({ type: 'missing-source', severity: 'error', page: page.path, message: `Page cites unknown source \"${ref.sourceId}\".`, metadata: ref })\n } else if (ref.anchorId && !(anchorIds.get(ref.sourceId)?.has(ref.anchorId))) {\n findings.push({ type: 'missing-source', severity: 'error', page: page.path, message: `Page cites unknown source anchor \"${ref.sourceId}#${ref.anchorId}\".`, metadata: ref })\n }\n }\n }\n\n for (const [title, paths] of titles) {\n if (title && paths.length > 1) {\n findings.push({ type: 'duplicate-title', severity: 'warning', message: `Duplicate title \"${title}\" in ${paths.join(', ')}.`, metadata: { paths } })\n }\n }\n for (const [id, paths] of pageIds) {\n if (id && paths.length > 1) {\n findings.push({ type: 'duplicate-page-id', severity: 'error', message: `Duplicate page id \"${id}\" in ${paths.join(', ')}.`, metadata: { paths } })\n }\n }\n for (const [hash, ids] of sourceHashes) {\n if (hash && ids.length > 1) {\n findings.push({ type: 'duplicate-source-hash', severity: 'warning', message: `Duplicate source content hash across ${ids.join(', ')}.`, metadata: { sourceIds: ids } })\n }\n }\n return findings\n}\n\nfunction isStructural(path: string): boolean {\n return path.endsWith('/index.md') || path.endsWith('/log.md') || path === 'knowledge/index.md' || path === 'knowledge/log.md'\n}\n\nfunction extractSourceRefs(text: string): Array<{ sourceId: string; anchorId?: string }> {\n const refs: Array<{ sourceId: string; anchorId?: string }> = []\n const regex = /\\[\\^([A-Za-z0-9_-]+)(?:#([A-Za-z0-9_.:-]+))?\\]/g\n let match: RegExpExecArray | null\n while ((match = regex.exec(text)) !== null) {\n refs.push({ sourceId: match[1]!, anchorId: match[2] })\n }\n return refs\n}\n","import type { KnowledgeIndex, KnowledgeLintFinding, KnowledgePage } from './types'\nimport { lintKnowledgeIndex } from './lint'\nimport { searchKnowledge } from './search'\n\nexport interface KnowledgeInspection {\n pageCount: number\n sourceCount: number\n expiredSourceCount: number\n staleSourceCount: number\n edgeCount: number\n findingCount: number\n blockingFindingCount: number\n topPages: Array<{ path: string; title: string; degree: number; sources: number }>\n sourceFreshness: SourceFreshnessInspection[]\n findings: KnowledgeLintFinding[]\n}\n\nexport interface SourceFreshnessInspection {\n id: string\n title?: string\n uri: string\n status: 'fresh' | 'expired' | 'unknown'\n validUntil?: string\n lastVerifiedAt?: string\n}\n\nexport function inspectKnowledgeIndex(index: KnowledgeIndex, options: { now?: Date } = {}): KnowledgeInspection {\n const now = options.now ?? new Date()\n const findings = lintKnowledgeIndex(index)\n const degree = new Map(index.graph.nodes.map((node) => [node.id, node.inDegree + node.outDegree]))\n const sourceFreshness = index.sources.map((source) => inspectSourceFreshness(source, now))\n return {\n pageCount: index.pages.length,\n sourceCount: index.sources.length,\n expiredSourceCount: sourceFreshness.filter((source) => source.status === 'expired').length,\n staleSourceCount: sourceFreshness.filter((source) => source.status !== 'fresh').length,\n edgeCount: index.graph.edges.length,\n findingCount: findings.length,\n blockingFindingCount: findings.filter((finding) => finding.severity === 'error').length,\n topPages: [...index.pages]\n .sort((a, b) => (degree.get(b.id) ?? 0) - (degree.get(a.id) ?? 0))\n .slice(0, 10)\n .map((page) => ({ path: page.path, title: page.title, degree: degree.get(page.id) ?? 0, sources: page.sourceIds.length })),\n sourceFreshness,\n findings,\n }\n}\n\nfunction inspectSourceFreshness(source: KnowledgeIndex['sources'][number], now: Date): SourceFreshnessInspection {\n const validUntil = source.validUntil ?? stringMetadata(source.metadata, 'validUntil') ?? stringMetadata(source.metadata, 'expiresAt')\n const lastVerifiedAt = source.lastVerifiedAt ?? stringMetadata(source.metadata, 'lastVerifiedAt')\n const status = validUntil && Number.isFinite(Date.parse(validUntil))\n ? Date.parse(validUntil) <= now.getTime() ? 'expired' : 'fresh'\n : 'unknown'\n return { id: source.id, title: source.title, uri: source.uri, status, validUntil, lastVerifiedAt }\n}\n\nfunction stringMetadata(metadata: Record<string, unknown> | undefined, key: string): string | undefined {\n const value = metadata?.[key]\n return typeof value === 'string' ? value : undefined\n}\n\nexport interface KnowledgeExplanation {\n target: string\n page?: KnowledgePage\n sources: Array<{ id: string; title?: string; uri: string }>\n links: string[]\n inbound: string[]\n related: Array<{ path: string; title: string; score: number }>\n}\n\nexport function explainKnowledgeTarget(index: KnowledgeIndex, target: string): KnowledgeExplanation {\n const page = index.pages.find((candidate) => candidate.path === target || candidate.id === target || candidate.title.toLowerCase() === target.toLowerCase())\n const inbound = page\n ? index.graph.edges.filter((edge) => edge.target === page.id).map((edge) => index.pages.find((candidate) => candidate.id === edge.source)?.path ?? edge.source)\n : []\n const related = page\n ? searchKnowledge(index, `${page.title} ${page.tags.join(' ')}`, 6)\n .filter((result) => result.page.id !== page.id)\n .map((result) => ({ path: result.page.path, title: result.page.title, score: result.score }))\n : searchKnowledge(index, target, 6).map((result) => ({ path: result.page.path, title: result.page.title, score: result.score }))\n return {\n target,\n page,\n sources: page ? index.sources.filter((source) => page.sourceIds.includes(source.id)).map((source) => ({ id: source.id, title: source.title, uri: source.uri })) : [],\n links: page?.outLinks ?? [],\n inbound,\n related,\n }\n}\n","import type { KnowledgeIndex, KnowledgeLintFinding } from './types'\nimport { lintKnowledgeIndex } from './lint'\nimport { KnowledgeIndexSchema } from './schemas'\n\nexport interface ValidateKnowledgeOptions {\n strict?: boolean\n}\n\nexport interface ValidateKnowledgeResult {\n ok: boolean\n findings: KnowledgeLintFinding[]\n}\n\nexport function validateKnowledgeIndex(index: KnowledgeIndex, options: ValidateKnowledgeOptions = {}): ValidateKnowledgeResult {\n const findings = [...lintKnowledgeIndex(index)]\n const parsed = KnowledgeIndexSchema.safeParse(index)\n if (!parsed.success) {\n findings.push({\n type: 'missing-frontmatter',\n severity: 'error',\n message: parsed.error.issues.map((issue) => `${issue.path.join('.')}: ${issue.message}`).join('; '),\n })\n }\n if (options.strict) {\n for (const page of index.pages) {\n if (isStructuralPage(page.path)) continue\n if (!page.frontmatter.id || !page.frontmatter.title) {\n findings.push({\n type: 'missing-frontmatter',\n severity: 'error',\n page: page.path,\n message: 'Strict mode requires id and title frontmatter.',\n })\n }\n }\n }\n return { ok: !findings.some((finding) => finding.severity === 'error'), findings }\n}\n\nfunction isStructuralPage(path: string): boolean {\n return path === 'knowledge/index.md' || path === 'knowledge/log.md' || path.endsWith('/index.md') || 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- {"version":3,"sources":["../src/viz/index.ts"],"sourcesContent":["import type { KnowledgeGraph, KnowledgeGraphEdge, KnowledgeGraphNode } from '../types'\n\nexport interface KnowledgeVizNode extends KnowledgeGraphNode {\n degree: number\n community: number\n}\n\nexport interface KnowledgeVizEdge extends KnowledgeGraphEdge {\n id: string\n}\n\nexport interface KnowledgeCommunity {\n id: number\n nodeIds: string[]\n topTitles: string[]\n cohesion: number\n}\n\nexport interface KnowledgeVizGraph {\n nodes: KnowledgeVizNode[]\n edges: KnowledgeVizEdge[]\n communities: KnowledgeCommunity[]\n}\n\nexport interface KnowledgeGap {\n type: 'isolated-node' | 'sparse-community' | 'bridge-node'\n title: string\n nodeIds: string[]\n suggestion: string\n}\n\nexport interface SurprisingConnection {\n source: KnowledgeVizNode\n target: KnowledgeVizNode\n score: number\n reasons: string[]\n}\n\nexport function toKnowledgeVizGraph(graph: KnowledgeGraph): KnowledgeVizGraph {\n const adjacency = buildAdjacency(graph)\n const communities = assignCommunities(graph.nodes, adjacency)\n const communityByNode = new Map<number, number>()\n communities.forEach((community) => {\n for (const nodeId of community.nodeIds) communityByNode.set(hashNode(nodeId), community.id)\n })\n const nodes = graph.nodes.map((node) => ({\n ...node,\n degree: node.inDegree + node.outDegree,\n community: communityByNode.get(hashNode(node.id)) ?? 0,\n }))\n return {\n nodes,\n edges: graph.edges.map((edge) => ({ ...edge, id: `${edge.source}->${edge.target}` })),\n communities,\n }\n}\n\nexport function detectKnowledgeGaps(graph: KnowledgeVizGraph, limit = 10): KnowledgeGap[] {\n const gaps: KnowledgeGap[] = []\n const isolated = graph.nodes.filter((node) => node.degree <= 1 && !isStructural(node.path))\n if (isolated.length > 0) {\n gaps.push({\n type: 'isolated-node',\n title: `${isolated.length} isolated page${isolated.length === 1 ? '' : 's'}`,\n nodeIds: isolated.map((node) => node.id),\n suggestion: 'Add cross-links, sources, or follow-up research to connect these pages to the knowledge graph.',\n })\n }\n for (const community of graph.communities) {\n if (community.nodeIds.length >= 3 && community.cohesion < 0.15) {\n gaps.push({\n type: 'sparse-community',\n title: `Sparse cluster: ${community.topTitles[0] ?? `community ${community.id}`}`,\n nodeIds: community.nodeIds,\n suggestion: 'This cluster has weak internal evidence. Add synthesis pages or relation links between its strongest concepts.',\n })\n }\n }\n const byCommunityNeighbors = new Map<string, Set<number>>()\n const nodeById = new Map(graph.nodes.map((node) => [node.id, node]))\n for (const edge of graph.edges) {\n const source = nodeById.get(edge.source)\n const target = nodeById.get(edge.target)\n if (!source || !target) continue\n if (!byCommunityNeighbors.has(source.id)) byCommunityNeighbors.set(source.id, new Set())\n if (!byCommunityNeighbors.has(target.id)) byCommunityNeighbors.set(target.id, new Set())\n byCommunityNeighbors.get(source.id)!.add(target.community)\n byCommunityNeighbors.get(target.id)!.add(source.community)\n }\n for (const node of graph.nodes) {\n if ((byCommunityNeighbors.get(node.id)?.size ?? 0) >= 3) {\n gaps.push({\n type: 'bridge-node',\n title: `Bridge page: ${node.title}`,\n nodeIds: [node.id],\n suggestion: 'This page connects multiple knowledge areas. Keep it well cited and current.',\n })\n }\n }\n return gaps.slice(0, limit)\n}\n\nexport function findSurprisingConnections(graph: KnowledgeVizGraph, limit = 10): SurprisingConnection[] {\n const nodeById = new Map(graph.nodes.map((node) => [node.id, node]))\n const scored: SurprisingConnection[] = []\n for (const edge of graph.edges) {\n const source = nodeById.get(edge.source)\n const target = nodeById.get(edge.target)\n if (!source || !target) continue\n let score = edge.weight\n const reasons = [...edge.reasons]\n if (source.community !== target.community) {\n score += 3\n reasons.push('cross-community')\n }\n if (source.tags.some((tag) => !target.tags.includes(tag))) {\n score += 1\n reasons.push('cross-tag')\n }\n if (score >= 3) scored.push({ source, target, score, reasons })\n }\n return scored.sort((a, b) => b.score - a.score).slice(0, limit)\n}\n\nfunction buildAdjacency(graph: KnowledgeGraph): Map<string, Set<string>> {\n const out = new Map<string, Set<string>>()\n for (const node of graph.nodes) out.set(node.id, new Set())\n for (const edge of graph.edges) {\n out.get(edge.source)?.add(edge.target)\n out.get(edge.target)?.add(edge.source)\n }\n return out\n}\n\nfunction assignCommunities(nodes: KnowledgeGraphNode[], adjacency: Map<string, Set<string>>): KnowledgeCommunity[] {\n const seen = new Set<string>()\n const communities: KnowledgeCommunity[] = []\n for (const node of nodes) {\n if (seen.has(node.id)) continue\n const queue = [node.id]\n const ids: string[] = []\n seen.add(node.id)\n while (queue.length > 0) {\n const id = queue.shift()!\n ids.push(id)\n for (const next of adjacency.get(id) ?? []) {\n if (!seen.has(next)) {\n seen.add(next)\n queue.push(next)\n }\n }\n }\n const memberNodes = ids.map((id) => nodes.find((candidate) => candidate.id === id)).filter((item): item is KnowledgeGraphNode => Boolean(item))\n communities.push({\n id: communities.length,\n nodeIds: ids,\n topTitles: memberNodes.sort((a, b) => b.inDegree + b.outDegree - (a.inDegree + a.outDegree)).slice(0, 5).map((item) => item.title),\n cohesion: cohesion(ids, adjacency),\n })\n }\n return communities.sort((a, b) => b.nodeIds.length - a.nodeIds.length)\n}\n\nfunction cohesion(ids: string[], adjacency: Map<string, Set<string>>): number {\n if (ids.length < 2) return 0\n let edges = 0\n const idSet = new Set(ids)\n for (const id of ids) {\n for (const next of adjacency.get(id) ?? 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