@synsci/cli-darwin-arm64 1.1.76 → 1.1.78
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/skills/adaptyv/SKILL.md +114 -0
- package/bin/skills/adaptyv/reference/api_reference.md +308 -0
- package/bin/skills/adaptyv/reference/examples.md +913 -0
- package/bin/skills/adaptyv/reference/experiments.md +360 -0
- package/bin/skills/adaptyv/reference/protein_optimization.md +637 -0
- package/bin/skills/aeon/SKILL.md +374 -0
- package/bin/skills/aeon/references/anomaly_detection.md +154 -0
- package/bin/skills/aeon/references/classification.md +144 -0
- package/bin/skills/aeon/references/clustering.md +123 -0
- package/bin/skills/aeon/references/datasets_benchmarking.md +387 -0
- package/bin/skills/aeon/references/distances.md +256 -0
- package/bin/skills/aeon/references/forecasting.md +140 -0
- package/bin/skills/aeon/references/networks.md +289 -0
- package/bin/skills/aeon/references/regression.md +118 -0
- package/bin/skills/aeon/references/segmentation.md +163 -0
- package/bin/skills/aeon/references/similarity_search.md +187 -0
- package/bin/skills/aeon/references/transformations.md +246 -0
- package/bin/skills/alphafold-database/SKILL.md +513 -0
- package/bin/skills/alphafold-database/references/api_reference.md +423 -0
- package/bin/skills/anndata/SKILL.md +400 -0
- package/bin/skills/anndata/references/best_practices.md +525 -0
- package/bin/skills/anndata/references/concatenation.md +396 -0
- package/bin/skills/anndata/references/data_structure.md +314 -0
- package/bin/skills/anndata/references/io_operations.md +404 -0
- package/bin/skills/anndata/references/manipulation.md +516 -0
- package/bin/skills/arboreto/SKILL.md +243 -0
- package/bin/skills/arboreto/references/algorithms.md +138 -0
- package/bin/skills/arboreto/references/basic_inference.md +151 -0
- package/bin/skills/arboreto/references/distributed_computing.md +242 -0
- package/bin/skills/arboreto/scripts/basic_grn_inference.py +97 -0
- package/bin/skills/astropy/SKILL.md +331 -0
- package/bin/skills/astropy/references/coordinates.md +273 -0
- package/bin/skills/astropy/references/cosmology.md +307 -0
- package/bin/skills/astropy/references/fits.md +396 -0
- package/bin/skills/astropy/references/tables.md +489 -0
- package/bin/skills/astropy/references/time.md +404 -0
- package/bin/skills/astropy/references/units.md +178 -0
- package/bin/skills/astropy/references/wcs_and_other_modules.md +373 -0
- package/bin/skills/benchling-integration/SKILL.md +480 -0
- package/bin/skills/benchling-integration/references/api_endpoints.md +883 -0
- package/bin/skills/benchling-integration/references/authentication.md +379 -0
- package/bin/skills/benchling-integration/references/sdk_reference.md +774 -0
- package/bin/skills/biopython/SKILL.md +443 -0
- package/bin/skills/biopython/references/advanced.md +577 -0
- package/bin/skills/biopython/references/alignment.md +362 -0
- package/bin/skills/biopython/references/blast.md +455 -0
- package/bin/skills/biopython/references/databases.md +484 -0
- package/bin/skills/biopython/references/phylogenetics.md +566 -0
- package/bin/skills/biopython/references/sequence_io.md +285 -0
- package/bin/skills/biopython/references/structure.md +564 -0
- package/bin/skills/biorxiv-database/SKILL.md +483 -0
- package/bin/skills/biorxiv-database/references/api_reference.md +280 -0
- package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
- package/bin/skills/bioservices/SKILL.md +361 -0
- package/bin/skills/bioservices/references/identifier_mapping.md +685 -0
- package/bin/skills/bioservices/references/services_reference.md +636 -0
- package/bin/skills/bioservices/references/workflow_patterns.md +811 -0
- package/bin/skills/bioservices/scripts/batch_id_converter.py +347 -0
- package/bin/skills/bioservices/scripts/compound_cross_reference.py +378 -0
- package/bin/skills/bioservices/scripts/pathway_analysis.py +309 -0
- package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
- package/bin/skills/brenda-database/SKILL.md +719 -0
- package/bin/skills/brenda-database/references/api_reference.md +537 -0
- package/bin/skills/brenda-database/scripts/brenda_queries.py +844 -0
- package/bin/skills/brenda-database/scripts/brenda_visualization.py +772 -0
- package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
- package/bin/skills/cellxgene-census/SKILL.md +511 -0
- package/bin/skills/cellxgene-census/references/census_schema.md +182 -0
- package/bin/skills/cellxgene-census/references/common_patterns.md +351 -0
- package/bin/skills/chembl-database/SKILL.md +389 -0
- package/bin/skills/chembl-database/references/api_reference.md +272 -0
- package/bin/skills/chembl-database/scripts/example_queries.py +278 -0
- package/bin/skills/cirq/SKILL.md +346 -0
- package/bin/skills/cirq/references/building.md +307 -0
- package/bin/skills/cirq/references/experiments.md +572 -0
- package/bin/skills/cirq/references/hardware.md +515 -0
- package/bin/skills/cirq/references/noise.md +515 -0
- package/bin/skills/cirq/references/simulation.md +350 -0
- package/bin/skills/cirq/references/transformation.md +416 -0
- package/bin/skills/clinicaltrials-database/SKILL.md +507 -0
- package/bin/skills/clinicaltrials-database/references/api_reference.md +358 -0
- package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
- package/bin/skills/clinpgx-database/SKILL.md +638 -0
- package/bin/skills/clinpgx-database/references/api_reference.md +757 -0
- package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +518 -0
- package/bin/skills/clinvar-database/SKILL.md +362 -0
- package/bin/skills/clinvar-database/references/api_reference.md +227 -0
- package/bin/skills/clinvar-database/references/clinical_significance.md +218 -0
- package/bin/skills/clinvar-database/references/data_formats.md +358 -0
- package/bin/skills/cobrapy/SKILL.md +463 -0
- package/bin/skills/cobrapy/references/api_quick_reference.md +655 -0
- package/bin/skills/cobrapy/references/workflows.md +593 -0
- package/bin/skills/cosmic-database/SKILL.md +336 -0
- package/bin/skills/cosmic-database/references/cosmic_data_reference.md +220 -0
- package/bin/skills/cosmic-database/scripts/download_cosmic.py +231 -0
- package/bin/skills/dask/SKILL.md +456 -0
- package/bin/skills/dask/references/arrays.md +497 -0
- package/bin/skills/dask/references/bags.md +468 -0
- package/bin/skills/dask/references/best-practices.md +277 -0
- package/bin/skills/dask/references/dataframes.md +368 -0
- package/bin/skills/dask/references/futures.md +541 -0
- package/bin/skills/dask/references/schedulers.md +504 -0
- package/bin/skills/datacommons-client/SKILL.md +255 -0
- package/bin/skills/datacommons-client/references/getting_started.md +417 -0
- package/bin/skills/datacommons-client/references/node.md +250 -0
- package/bin/skills/datacommons-client/references/observation.md +185 -0
- package/bin/skills/datacommons-client/references/resolve.md +246 -0
- package/bin/skills/datamol/SKILL.md +706 -0
- package/bin/skills/datamol/references/conformers_module.md +131 -0
- package/bin/skills/datamol/references/core_api.md +130 -0
- package/bin/skills/datamol/references/descriptors_viz.md +195 -0
- package/bin/skills/datamol/references/fragments_scaffolds.md +174 -0
- package/bin/skills/datamol/references/io_module.md +109 -0
- package/bin/skills/datamol/references/reactions_data.md +218 -0
- package/bin/skills/deepchem/SKILL.md +597 -0
- package/bin/skills/deepchem/references/api_reference.md +303 -0
- package/bin/skills/deepchem/references/workflows.md +491 -0
- package/bin/skills/deepchem/scripts/graph_neural_network.py +338 -0
- package/bin/skills/deepchem/scripts/predict_solubility.py +224 -0
- package/bin/skills/deepchem/scripts/transfer_learning.py +375 -0
- package/bin/skills/deeptools/SKILL.md +531 -0
- package/bin/skills/deeptools/assets/quick_reference.md +58 -0
- package/bin/skills/deeptools/references/effective_genome_sizes.md +116 -0
- package/bin/skills/deeptools/references/normalization_methods.md +410 -0
- package/bin/skills/deeptools/references/tools_reference.md +533 -0
- package/bin/skills/deeptools/references/workflows.md +474 -0
- package/bin/skills/deeptools/scripts/validate_files.py +195 -0
- package/bin/skills/deeptools/scripts/workflow_generator.py +454 -0
- package/bin/skills/denario/SKILL.md +215 -0
- package/bin/skills/denario/references/examples.md +494 -0
- package/bin/skills/denario/references/installation.md +213 -0
- package/bin/skills/denario/references/llm_configuration.md +265 -0
- package/bin/skills/denario/references/research_pipeline.md +471 -0
- package/bin/skills/diffdock/SKILL.md +483 -0
- package/bin/skills/diffdock/assets/batch_template.csv +4 -0
- package/bin/skills/diffdock/assets/custom_inference_config.yaml +90 -0
- package/bin/skills/diffdock/references/confidence_and_limitations.md +182 -0
- package/bin/skills/diffdock/references/parameters_reference.md +163 -0
- package/bin/skills/diffdock/references/workflows_examples.md +392 -0
- package/bin/skills/diffdock/scripts/analyze_results.py +334 -0
- package/bin/skills/diffdock/scripts/prepare_batch_csv.py +254 -0
- package/bin/skills/diffdock/scripts/setup_check.py +278 -0
- package/bin/skills/dnanexus-integration/SKILL.md +383 -0
- package/bin/skills/dnanexus-integration/references/app-development.md +247 -0
- package/bin/skills/dnanexus-integration/references/configuration.md +646 -0
- package/bin/skills/dnanexus-integration/references/data-operations.md +400 -0
- package/bin/skills/dnanexus-integration/references/job-execution.md +412 -0
- package/bin/skills/dnanexus-integration/references/python-sdk.md +523 -0
- package/bin/skills/document-skills/docx/LICENSE.txt +30 -0
- package/bin/skills/document-skills/docx/SKILL.md +233 -0
- package/bin/skills/document-skills/docx/docx-js.md +350 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlDataProperties.xsd +25 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-customXmlSchemaProperties.xsd +18 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesCustom.xsd +59 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesExtended.xsd +56 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-documentPropertiesVariantTypes.xsd +195 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-math.xsd +582 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-relationshipReference.xsd +25 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/sml.xsd +4439 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/mce/mc.xsd +75 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2012.xsd +67 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-2018.xsd +14 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cex-2018.xsd +20 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-cid-2016.xsd +13 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-sdtdatahash-2020.xsd +4 -0
- package/bin/skills/document-skills/docx/ooxml/schemas/microsoft/wml-symex-2015.xsd +8 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/pack.py +159 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/unpack.py +29 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validate.py +69 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validation/__init__.py +15 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validation/base.py +951 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validation/docx.py +274 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validation/pptx.py +315 -0
- package/bin/skills/document-skills/docx/ooxml/scripts/validation/redlining.py +279 -0
- package/bin/skills/document-skills/docx/ooxml.md +610 -0
- package/bin/skills/document-skills/docx/scripts/__init__.py +1 -0
- package/bin/skills/document-skills/docx/scripts/document.py +1276 -0
- package/bin/skills/document-skills/docx/scripts/templates/comments.xml +3 -0
- package/bin/skills/document-skills/docx/scripts/templates/commentsExtended.xml +3 -0
- package/bin/skills/document-skills/docx/scripts/templates/commentsExtensible.xml +3 -0
- package/bin/skills/document-skills/docx/scripts/templates/commentsIds.xml +3 -0
- package/bin/skills/document-skills/docx/scripts/templates/people.xml +3 -0
- package/bin/skills/document-skills/docx/scripts/utilities.py +374 -0
- package/bin/skills/document-skills/pdf/LICENSE.txt +30 -0
- package/bin/skills/document-skills/pdf/SKILL.md +330 -0
- package/bin/skills/document-skills/pdf/forms.md +205 -0
- package/bin/skills/document-skills/pdf/reference.md +612 -0
- package/bin/skills/document-skills/pdf/scripts/check_bounding_boxes.py +70 -0
- package/bin/skills/document-skills/pdf/scripts/check_bounding_boxes_test.py +226 -0
- package/bin/skills/document-skills/pdf/scripts/check_fillable_fields.py +12 -0
- package/bin/skills/document-skills/pdf/scripts/convert_pdf_to_images.py +35 -0
- package/bin/skills/document-skills/pdf/scripts/create_validation_image.py +41 -0
- package/bin/skills/document-skills/pdf/scripts/extract_form_field_info.py +152 -0
- package/bin/skills/document-skills/pdf/scripts/fill_fillable_fields.py +114 -0
- package/bin/skills/document-skills/pdf/scripts/fill_pdf_form_with_annotations.py +108 -0
- package/bin/skills/document-skills/pptx/LICENSE.txt +30 -0
- package/bin/skills/document-skills/pptx/SKILL.md +520 -0
- package/bin/skills/document-skills/pptx/html2pptx.md +625 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/dml-wordprocessingDrawing.xsd +287 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
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- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/shared-commonSimpleTypes.xsd +174 -0
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- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-main.xsd +570 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-officeDrawing.xsd +509 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-presentationDrawing.xsd +12 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-spreadsheetDrawing.xsd +108 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/vml-wordprocessingDrawing.xsd +96 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/wml.xsd +3646 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ISO-IEC29500-4_2016/xml.xsd +116 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-contentTypes.xsd +42 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-coreProperties.xsd +50 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-digSig.xsd +49 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/ecma/fouth-edition/opc-relationships.xsd +33 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/mce/mc.xsd +75 -0
- package/bin/skills/document-skills/pptx/ooxml/schemas/microsoft/wml-2010.xsd +560 -0
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# Building Quantum Circuits
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circuit.append([
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**GridQubit**: 2D grid topology for hardware-like layouts
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```python
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qubits = cirq.GridQubit.square(2) # 2x2 grid
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```
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**LineQubit**: 1D linear topology
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```python
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**NamedQubit**: Custom-named qubits
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+
## Common Gates and Operations
|
|
48
|
+
|
|
49
|
+
### Single-Qubit Gates
|
|
50
|
+
|
|
51
|
+
```python
|
|
52
|
+
# Pauli gates
|
|
53
|
+
cirq.X(qubit) # NOT gate
|
|
54
|
+
cirq.Y(qubit)
|
|
55
|
+
cirq.Z(qubit)
|
|
56
|
+
|
|
57
|
+
# Hadamard
|
|
58
|
+
cirq.H(qubit)
|
|
59
|
+
|
|
60
|
+
# Rotation gates
|
|
61
|
+
cirq.rx(angle)(qubit) # Rotation around X-axis
|
|
62
|
+
cirq.ry(angle)(qubit) # Rotation around Y-axis
|
|
63
|
+
cirq.rz(angle)(qubit) # Rotation around Z-axis
|
|
64
|
+
|
|
65
|
+
# Phase gates
|
|
66
|
+
cirq.S(qubit) # √Z gate
|
|
67
|
+
cirq.T(qubit) # ⁴√Z gate
|
|
68
|
+
```
|
|
69
|
+
|
|
70
|
+
### Two-Qubit Gates
|
|
71
|
+
|
|
72
|
+
```python
|
|
73
|
+
# CNOT (Controlled-NOT)
|
|
74
|
+
cirq.CNOT(control, target)
|
|
75
|
+
cirq.CX(control, target) # Alias
|
|
76
|
+
|
|
77
|
+
# CZ (Controlled-Z)
|
|
78
|
+
cirq.CZ(q0, q1)
|
|
79
|
+
|
|
80
|
+
# SWAP
|
|
81
|
+
cirq.SWAP(q0, q1)
|
|
82
|
+
|
|
83
|
+
# iSWAP
|
|
84
|
+
cirq.ISWAP(q0, q1)
|
|
85
|
+
|
|
86
|
+
# Controlled rotations
|
|
87
|
+
cirq.CZPowGate(exponent=0.5)(q0, q1)
|
|
88
|
+
```
|
|
89
|
+
|
|
90
|
+
### Measurement Operations
|
|
91
|
+
|
|
92
|
+
```python
|
|
93
|
+
# Measure single qubit
|
|
94
|
+
cirq.measure(qubit, key='m')
|
|
95
|
+
|
|
96
|
+
# Measure multiple qubits
|
|
97
|
+
cirq.measure(q0, q1, q2, key='result')
|
|
98
|
+
|
|
99
|
+
# Measure all qubits in circuit
|
|
100
|
+
circuit.append(cirq.measure(*qubits, key='final'))
|
|
101
|
+
```
|
|
102
|
+
|
|
103
|
+
## Advanced Circuit Construction
|
|
104
|
+
|
|
105
|
+
### Parameterized Gates
|
|
106
|
+
|
|
107
|
+
```python
|
|
108
|
+
import sympy
|
|
109
|
+
|
|
110
|
+
# Create symbolic parameters
|
|
111
|
+
theta = sympy.Symbol('theta')
|
|
112
|
+
phi = sympy.Symbol('phi')
|
|
113
|
+
|
|
114
|
+
# Use in gates
|
|
115
|
+
circuit = cirq.Circuit(
|
|
116
|
+
cirq.rx(theta)(q0),
|
|
117
|
+
cirq.ry(phi)(q1),
|
|
118
|
+
cirq.CNOT(q0, q1)
|
|
119
|
+
)
|
|
120
|
+
|
|
121
|
+
# Resolve parameters later
|
|
122
|
+
resolved = cirq.resolve_parameters(circuit, {'theta': 0.5, 'phi': 1.2})
|
|
123
|
+
```
|
|
124
|
+
|
|
125
|
+
### Custom Gates via Unitaries
|
|
126
|
+
|
|
127
|
+
```python
|
|
128
|
+
import numpy as np
|
|
129
|
+
|
|
130
|
+
# Define unitary matrix
|
|
131
|
+
unitary = np.array([
|
|
132
|
+
[1, 0, 0, 0],
|
|
133
|
+
[0, 1, 0, 0],
|
|
134
|
+
[0, 0, 0, 1],
|
|
135
|
+
[0, 0, 1, 0]
|
|
136
|
+
]) / np.sqrt(2)
|
|
137
|
+
|
|
138
|
+
# Create gate from unitary
|
|
139
|
+
gate = cirq.MatrixGate(unitary)
|
|
140
|
+
operation = gate(q0, q1)
|
|
141
|
+
```
|
|
142
|
+
|
|
143
|
+
### Gate Decomposition
|
|
144
|
+
|
|
145
|
+
```python
|
|
146
|
+
# Define custom gate with decomposition
|
|
147
|
+
class MyGate(cirq.Gate):
|
|
148
|
+
def _num_qubits_(self):
|
|
149
|
+
return 1
|
|
150
|
+
|
|
151
|
+
def _decompose_(self, qubits):
|
|
152
|
+
q = qubits[0]
|
|
153
|
+
return [cirq.H(q), cirq.T(q), cirq.H(q)]
|
|
154
|
+
|
|
155
|
+
def _circuit_diagram_info_(self, args):
|
|
156
|
+
return 'MyGate'
|
|
157
|
+
|
|
158
|
+
# Use the custom gate
|
|
159
|
+
my_gate = MyGate()
|
|
160
|
+
circuit.append(my_gate(q0))
|
|
161
|
+
```
|
|
162
|
+
|
|
163
|
+
## Circuit Organization
|
|
164
|
+
|
|
165
|
+
### Moments
|
|
166
|
+
|
|
167
|
+
Circuits are organized into moments (parallel operations):
|
|
168
|
+
|
|
169
|
+
```python
|
|
170
|
+
# Explicit moment construction
|
|
171
|
+
circuit = cirq.Circuit(
|
|
172
|
+
cirq.Moment([cirq.H(q0), cirq.H(q1)]),
|
|
173
|
+
cirq.Moment([cirq.CNOT(q0, q1)]),
|
|
174
|
+
cirq.Moment([cirq.measure(q0, key='m0'), cirq.measure(q1, key='m1')])
|
|
175
|
+
)
|
|
176
|
+
|
|
177
|
+
# Access moments
|
|
178
|
+
for i, moment in enumerate(circuit):
|
|
179
|
+
print(f"Moment {i}: {moment}")
|
|
180
|
+
```
|
|
181
|
+
|
|
182
|
+
### Circuit Operations
|
|
183
|
+
|
|
184
|
+
```python
|
|
185
|
+
# Concatenate circuits
|
|
186
|
+
circuit3 = circuit1 + circuit2
|
|
187
|
+
|
|
188
|
+
# Insert operations
|
|
189
|
+
circuit.insert(index, operation)
|
|
190
|
+
|
|
191
|
+
# Append with strategy
|
|
192
|
+
circuit.append(operations, strategy=cirq.InsertStrategy.NEW_THEN_INLINE)
|
|
193
|
+
```
|
|
194
|
+
|
|
195
|
+
## Circuit Patterns
|
|
196
|
+
|
|
197
|
+
### Bell State Preparation
|
|
198
|
+
|
|
199
|
+
```python
|
|
200
|
+
def bell_state_circuit():
|
|
201
|
+
q0, q1 = cirq.LineQubit.range(2)
|
|
202
|
+
return cirq.Circuit(
|
|
203
|
+
cirq.H(q0),
|
|
204
|
+
cirq.CNOT(q0, q1)
|
|
205
|
+
)
|
|
206
|
+
```
|
|
207
|
+
|
|
208
|
+
### GHZ State
|
|
209
|
+
|
|
210
|
+
```python
|
|
211
|
+
def ghz_circuit(qubits):
|
|
212
|
+
circuit = cirq.Circuit()
|
|
213
|
+
circuit.append(cirq.H(qubits[0]))
|
|
214
|
+
for i in range(len(qubits) - 1):
|
|
215
|
+
circuit.append(cirq.CNOT(qubits[i], qubits[i+1]))
|
|
216
|
+
return circuit
|
|
217
|
+
```
|
|
218
|
+
|
|
219
|
+
### Quantum Fourier Transform
|
|
220
|
+
|
|
221
|
+
```python
|
|
222
|
+
def qft_circuit(qubits):
|
|
223
|
+
circuit = cirq.Circuit()
|
|
224
|
+
for i, q in enumerate(qubits):
|
|
225
|
+
circuit.append(cirq.H(q))
|
|
226
|
+
for j in range(i + 1, len(qubits)):
|
|
227
|
+
circuit.append(cirq.CZPowGate(exponent=1/2**(j-i))(qubits[j], q))
|
|
228
|
+
|
|
229
|
+
# Reverse qubit order
|
|
230
|
+
for i in range(len(qubits) // 2):
|
|
231
|
+
circuit.append(cirq.SWAP(qubits[i], qubits[len(qubits) - i - 1]))
|
|
232
|
+
|
|
233
|
+
return circuit
|
|
234
|
+
```
|
|
235
|
+
|
|
236
|
+
## Circuit Import/Export
|
|
237
|
+
|
|
238
|
+
### OpenQASM
|
|
239
|
+
|
|
240
|
+
```python
|
|
241
|
+
# Export to QASM
|
|
242
|
+
qasm_str = circuit.to_qasm()
|
|
243
|
+
|
|
244
|
+
# Import from QASM
|
|
245
|
+
from cirq.contrib.qasm_import import circuit_from_qasm
|
|
246
|
+
circuit = circuit_from_qasm(qasm_str)
|
|
247
|
+
```
|
|
248
|
+
|
|
249
|
+
### Circuit JSON
|
|
250
|
+
|
|
251
|
+
```python
|
|
252
|
+
import json
|
|
253
|
+
|
|
254
|
+
# Serialize
|
|
255
|
+
json_str = cirq.to_json(circuit)
|
|
256
|
+
|
|
257
|
+
# Deserialize
|
|
258
|
+
circuit = cirq.read_json(json_text=json_str)
|
|
259
|
+
```
|
|
260
|
+
|
|
261
|
+
## Working with Qudits
|
|
262
|
+
|
|
263
|
+
Qudits are higher-dimensional quantum systems (qutrits, ququarts, etc.):
|
|
264
|
+
|
|
265
|
+
```python
|
|
266
|
+
# Create qutrit (3-level system)
|
|
267
|
+
qutrit = cirq.LineQid(0, dimension=3)
|
|
268
|
+
|
|
269
|
+
# Custom qutrit gate
|
|
270
|
+
class QutritXGate(cirq.Gate):
|
|
271
|
+
def _qid_shape_(self):
|
|
272
|
+
return (3,)
|
|
273
|
+
|
|
274
|
+
def _unitary_(self):
|
|
275
|
+
return np.array([
|
|
276
|
+
[0, 0, 1],
|
|
277
|
+
[1, 0, 0],
|
|
278
|
+
[0, 1, 0]
|
|
279
|
+
])
|
|
280
|
+
|
|
281
|
+
gate = QutritXGate()
|
|
282
|
+
circuit = cirq.Circuit(gate(qutrit))
|
|
283
|
+
```
|
|
284
|
+
|
|
285
|
+
## Observables
|
|
286
|
+
|
|
287
|
+
Create observables from Pauli operators:
|
|
288
|
+
|
|
289
|
+
```python
|
|
290
|
+
# Single Pauli observable
|
|
291
|
+
obs = cirq.Z(q0)
|
|
292
|
+
|
|
293
|
+
# Pauli string
|
|
294
|
+
obs = cirq.X(q0) * cirq.Y(q1) * cirq.Z(q2)
|
|
295
|
+
|
|
296
|
+
# Linear combination
|
|
297
|
+
from cirq import PauliSum
|
|
298
|
+
obs = 0.5 * cirq.X(q0) + 0.3 * cirq.Z(q1)
|
|
299
|
+
```
|
|
300
|
+
|
|
301
|
+
## Best Practices
|
|
302
|
+
|
|
303
|
+
1. **Use appropriate qubit types**: GridQubit for hardware-like topologies, LineQubit for 1D problems
|
|
304
|
+
2. **Keep circuits modular**: Build reusable circuit functions
|
|
305
|
+
3. **Use symbolic parameters**: For parameter sweeps and optimization
|
|
306
|
+
4. **Label measurements clearly**: Use descriptive keys for measurement results
|
|
307
|
+
5. **Document custom gates**: Include circuit diagram information for visualization
|