@swarmdo/cli 1.13.0 → 1.15.0

package/README.md

@@ -2,7 +2,7 @@
 
 [![swarmdo](swarmdo/assets/brand/logo-full.svg)](https://swarmdo.com)
 
-[![npm version (swarmdo)](https://img.shields.io/badge/npx%20swarmdo-v1.13.0-cb3837?style=for-the-badge&logo=npm&logoColor=white)](https://github.com/SwarmDo/swarmdo/releases)
+[![npm version (swarmdo)](https://img.shields.io/badge/npx%20swarmdo-v1.15.0-cb3837?style=for-the-badge&logo=npm&logoColor=white)](https://github.com/SwarmDo/swarmdo/releases)
 [![MIT License](https://img.shields.io/badge/License-MIT-yellow?style=for-the-badge)](https://github.com/SwarmDo/swarmdo/blob/main/LICENSE)
 [![Website](https://img.shields.io/badge/swarmdo.com-e2a33c?style=for-the-badge&logoColor=black)](https://swarmdo.com)
 [![Star on GitHub](https://img.shields.io/github/stars/SwarmDo/swarmdo?style=for-the-badge&logo=github&color=gold)](https://github.com/SwarmDo/swarmdo)
@@ -282,6 +282,8 @@ The recent release train added a full day-to-day operations layer around the swa
 | `swarmdo pack` | **Bundle a repo into one AI-context blob** — walk the tree (respects `.gitignore` + glob `--include`/`--exclude`, skips binaries/node_modules), emit markdown/xml/json/plain with a directory tree and per-file + total token estimates. `swarmdo pack --tokens` for a budget breakdown; `--redact` masks secrets first. Deterministic |
 | `swarmdo env` | **Catch env-var drift before deploy** — statically scan code for `process.env.X` / `import.meta.env.X` / `Deno.env.get` / `os.getenv` references and reconcile against `.env` and `.env.example`: reports **missing** (used but undeclared), **unused**, and **undocumented**. `--ci` exits 1 on missing vars. Also an MCP tool (`env_check`). Deterministic |
 | `swarmdo license` | **Audit dependency licenses** — walk `node_modules`, resolve each package's SPDX license, and gate on an allow/deny policy so a GPL or unknown license can't slip into a permissive tree. `--allow MIT,Apache-2.0 --ci` fails the build; distinct from `security` (CVEs). Also an MCP tool (`license_check`). Deterministic |
+| `swarmdo sbom` | **Software Bill of Materials from the lockfile** — emit a CycloneDX (default) or SPDX JSON manifest of every dependency with version, purl, license, and integrity hash, for compliance/vuln tooling. `--spec spdx`, `-o sbom.json`, `--production`. Completes the env/license/sbom supply-chain trio. Deterministic |
+| `swarmdo apply` | **A forgiving `git apply`** — apply a unified diff with fuzzy context matching, so an agent's patch lands even when line numbers have drifted or a context line is slightly off, and reports exactly which hunks couldn't. `--dry-run` to preview, `--fuzz N` to tolerate more drift. Also an MCP tool (`apply_patch`). Deterministic |
 | `swarmdo integrations` (alias `integrate`) | **Use swarmdo from Codex CLI, GitHub Copilot CLI, and pi** — one command wires AGENTS.md + each CLI's MCP config (idempotent, dry-run first, never touches your Claude Code setup) |
 | OpenRouter model pool | **Let swarms pick from any models you configure** — declare tier-mapped OpenRouter models in `swarmdo.config.json`; the router Thompson-samples among them per task and the execution layer dispatches the winner |
 | `swarmdo changelog` (alias `notes`) | **Release notes from conventional commits** — `--out NOTES.md` feeds `gh release create --notes-file` |

package/dist/src/apply/apply.d.ts

@@ -0,0 +1,50 @@
+/**
+ * apply.ts — apply a unified diff to source text with FUZZY context matching.
+ *
+ * LLM/agent-produced diffs frequently fail `git apply`: the model's context
+ * lines drift by a few lines, or whitespace differs, and git rejects the whole
+ * patch. This applier locates each hunk by searching for its context near the
+ * declared line (not only AT it), tolerates leading/trailing context drift up
+ * to a fuzz factor, and reports precisely which hunks couldn't land — instead
+ * of an all-or-nothing failure.
+ *
+ * Pure + deterministic: text in, text (or rejects) out. The fs read/write lives
+ * in ../commands/apply.ts.
+ */
+export interface HunkLine {
+    /** ' ' context, '-' removal, '+' addition */
+    type: ' ' | '-' | '+';
+    content: string;
+}
+export interface Hunk {
+    oldStart: number;
+    newStart: number;
+    lines: HunkLine[];
+}
+export interface FilePatch {
+    oldPath: string;
+    newPath: string;
+    hunks: Hunk[];
+}
+/** Parse a unified diff into per-file patches. Pure. Tolerates `a/`+`b/` prefixes. */
+export declare function parsePatch(text: string): FilePatch[];
+export interface ApplyOptions {
+    /** max leading/trailing context lines to drop when the full block won't match (default 2) */
+    fuzz?: number;
+}
+export interface HunkResult {
+    hunk: Hunk;
+    applied: boolean;
+    /** 0-based line where it landed (if applied) */
+    at?: number;
+    /** how many context lines were trimmed to make it fit */
+    fuzzUsed?: number;
+}
+export interface ApplyResult {
+    ok: boolean;
+    result: string;
+    hunks: HunkResult[];
+}
+/** Apply one file's hunks to `source`. Pure. Hunks are applied top-to-bottom with offset tracking. */
+export declare function applyPatch(source: string, patch: FilePatch, opts?: ApplyOptions): ApplyResult;
+//# sourceMappingURL=apply.d.ts.map

package/dist/src/apply/apply.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/apply/apply.js

@@ -0,0 +1,186 @@
+/**
+ * apply.ts — apply a unified diff to source text with FUZZY context matching.
+ *
+ * LLM/agent-produced diffs frequently fail `git apply`: the model's context
+ * lines drift by a few lines, or whitespace differs, and git rejects the whole
+ * patch. This applier locates each hunk by searching for its context near the
+ * declared line (not only AT it), tolerates leading/trailing context drift up
+ * to a fuzz factor, and reports precisely which hunks couldn't land — instead
+ * of an all-or-nothing failure.
+ *
+ * Pure + deterministic: text in, text (or rejects) out. The fs read/write lives
+ * in ../commands/apply.ts.
+ */
+/** Parse a unified diff into per-file patches. Pure. Tolerates `a/`+`b/` prefixes. */
+export function parsePatch(text) {
+    const files = [];
+    const lines = text.split('\n');
+    let cur = null;
+    let hunk = null;
+    const stripPrefix = (p) => p.replace(/^[ab]\//, '').replace(/\t.*$/, '').trim();
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
+        if (line.startsWith('diff --git')) {
+            cur = null;
+            hunk = null;
+            continue;
+        }
+        if (line.startsWith('--- ')) {
+            const old = stripPrefix(line.slice(4));
+            const next = lines[i + 1] ?? '';
+            const neu = next.startsWith('+++ ') ? stripPrefix(next.slice(4)) : old;
+            cur = { oldPath: old === '/dev/null' ? neu : old, newPath: neu === '/dev/null' ? old : neu, hunks: [] };
+            files.push(cur);
+            hunk = null;
+            i++; // consume the +++ line
+            continue;
+        }
+        if (line.startsWith('@@')) {
+            const m = line.match(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/);
+            if (m && cur) {
+                hunk = { oldStart: parseInt(m[1], 10), newStart: parseInt(m[2], 10), lines: [] };
+                cur.hunks.push(hunk);
+            }
+            continue;
+        }
+        if (hunk) {
+            if (line === '' && i === lines.length - 1)
+                continue; // trailing newline artifact
+            const t = line[0];
+            if (t === ' ' || t === '+' || t === '-') {
+                hunk.lines.push({ type: t, content: line.slice(1) });
+            }
+            else if (line === '') {
+                hunk.lines.push({ type: ' ', content: '' }); // blank context line written without the leading space
+            }
+            else if (line.startsWith('\\')) {
+                // "" — ignore
+            }
+            else {
+                hunk = null; // end of hunk block
+            }
+        }
+    }
+    return files;
+}
+/** The lines a hunk expects to find (context + removals), and produces (context + additions). */
+function hunkBlocks(hunk) {
+    const oldBlock = [];
+    const newBlock = [];
+    for (const l of hunk.lines) {
+        if (l.type === ' ') {
+            oldBlock.push(l.content);
+            newBlock.push(l.content);
+        }
+        else if (l.type === '-')
+            oldBlock.push(l.content);
+        else
+            newBlock.push(l.content);
+    }
+    return { oldBlock, newBlock };
+}
+function blockMatchesAt(source, at, block) {
+    if (at < 0 || at + block.length > source.length)
+        return false;
+    for (let i = 0; i < block.length; i++)
+        if (source[at + i] !== block[i])
+            return false;
+    return true;
+}
+/**
+ * Find where `block` occurs in `source`, preferring the position nearest
+ * `expected` (0-based). Returns -1 if not found. Deterministic: on ties the
+ * lower index wins.
+ */
+function findBlock(source, block, expected) {
+    if (block.length === 0)
+        return Math.max(0, Math.min(expected, source.length));
+    if (blockMatchesAt(source, expected, block))
+        return expected;
+    let best = -1;
+    let bestDist = Infinity;
+    for (let i = 0; i + block.length <= source.length; i++) {
+        if (!blockMatchesAt(source, i, block))
+            continue;
+        const dist = Math.abs(i - expected);
+        if (dist < bestDist) {
+            bestDist = dist;
+            best = i;
+        }
+    }
+    return best;
+}
+/** Apply one file's hunks to `source`. Pure. Hunks are applied top-to-bottom with offset tracking. */
+export function applyPatch(source, patch, opts = {}) {
+    const fuzz = opts.fuzz ?? 2;
+    const trailingNewline = source.endsWith('\n');
+    const lines = source.split('\n');
+    if (trailingNewline)
+        lines.pop(); // drop the empty element from a trailing \n
+    let offset = 0;
+    const results = [];
+    for (const hunk of patch.hunks) {
+        const { oldBlock, newBlock } = hunkBlocks(hunk);
+        const expected = hunk.oldStart - 1 + offset;
+        // Try the full block, then progressively trim up to `fuzz` context lines
+        // off each end (patch fuzz) to tolerate drift.
+        let placed = -1;
+        let usedFuzz = 0;
+        let trimLead = 0;
+        let trimTail = 0;
+        outer: for (let f = 0; f <= fuzz; f++) {
+            for (let lead = 0; lead <= f; lead++) {
+                const tail = f - lead;
+                const leadTrimmable = countLeadingContext(hunk);
+                const tailTrimmable = countTrailingContext(hunk);
+                if (lead > leadTrimmable || tail > tailTrimmable)
+                    continue;
+                const trimmed = oldBlock.slice(lead, oldBlock.length - tail);
+                const at = findBlock(lines, trimmed, expected + lead);
+                if (at >= 0) {
+                    placed = at - lead;
+                    usedFuzz = f;
+                    trimLead = lead;
+                    trimTail = tail;
+                    break outer;
+                }
+            }
+        }
+        if (placed < 0) {
+            results.push({ hunk, applied: false });
+            continue;
+        }
+        // Splice: remove oldBlock.length lines at `placed`, insert newBlock.
+        // (trimLead/trimTail only affected *matching*, not what we replace.)
+        void trimLead;
+        void trimTail;
+        lines.splice(placed, oldBlock.length, ...newBlock);
+        offset += newBlock.length - oldBlock.length;
+        results.push({ hunk, applied: true, at: placed, fuzzUsed: usedFuzz });
+    }
+    let result = lines.join('\n');
+    if (trailingNewline)
+        result += '\n';
+    return { ok: results.every((r) => r.applied), result, hunks: results };
+}
+function countLeadingContext(hunk) {
+    let n = 0;
+    for (const l of hunk.lines) {
+        if (l.type === ' ')
+            n++;
+        else
+            break;
+    }
+    return n;
+}
+function countTrailingContext(hunk) {
+    let n = 0;
+    for (let i = hunk.lines.length - 1; i >= 0; i--) {
+        if (hunk.lines[i].type === ' ')
+            n++;
+        else
+            break;
+    }
+    return n;
+}
+//# sourceMappingURL=apply.js.map

package/dist/src/apply/apply.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/apply.d.ts

@@ -0,0 +1,18 @@
+/**
+ * `swarmdo apply` — apply a unified diff to the working tree with fuzzy context
+ * matching. The forgiving counterpart to `git apply`: when an agent's diff has
+ * drifted line numbers or a slightly-off context line, this still lands the
+ * hunks it can and reports exactly which it couldn't, instead of rejecting the
+ * whole patch.
+ *
+ *   swarmdo apply changes.patch          # apply a patch file
+ *   agent-output | swarmdo apply         # apply a patch from stdin
+ *   swarmdo apply --dry-run changes.patch # preview: what would apply/reject
+ *   swarmdo apply --fuzz 3 changes.patch  # tolerate more context drift
+ *
+ * Engine (../apply/apply.ts) is pure + tested; this reads/writes files.
+ */
+import type { Command } from '../types.js';
+export declare const applyCommand: Command;
+export default applyCommand;
+//# sourceMappingURL=apply.d.ts.map

package/dist/src/commands/apply.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../../src/commands/apply.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAIH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAqF1E,eAAO,MAAM,YAAY,EAAE,OAc1B,CAAC;AAEF,eAAe,YAAY,CAAC"}

package/dist/src/commands/apply.js

@@ -0,0 +1,118 @@
+/**
+ * `swarmdo apply` — apply a unified diff to the working tree with fuzzy context
+ * matching. The forgiving counterpart to `git apply`: when an agent's diff has
+ * drifted line numbers or a slightly-off context line, this still lands the
+ * hunks it can and reports exactly which it couldn't, instead of rejecting the
+ * whole patch.
+ *
+ *   swarmdo apply changes.patch          # apply a patch file
+ *   agent-output | swarmdo apply         # apply a patch from stdin
+ *   swarmdo apply --dry-run changes.patch # preview: what would apply/reject
+ *   swarmdo apply --fuzz 3 changes.patch  # tolerate more context drift
+ *
+ * Engine (../apply/apply.ts) is pure + tested; this reads/writes files.
+ */
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { output } from '../output.js';
+import { parsePatch, applyPatch } from '../apply/apply.js';
+function readStdin() {
+    return new Promise((resolve) => {
+        const chunks = [];
+        process.stdin.on('data', (c) => chunks.push(Buffer.from(c)));
+        process.stdin.on('end', () => resolve(Buffer.concat(chunks).toString('utf8')));
+        process.stdin.on('error', () => resolve(Buffer.concat(chunks).toString('utf8')));
+    });
+}
+/** Resolve the file a patch targets, preferring the new path, then the old. */
+function targetFile(root, fp) {
+    return path.resolve(root, fp.newPath && fp.newPath !== '/dev/null' ? fp.newPath : fp.oldPath);
+}
+async function run(ctx) {
+    const root = ctx.cwd || process.cwd();
+    const dryRun = ctx.flags['dry-run'] === true;
+    const partial = ctx.flags.partial === true;
+    const fuzz = typeof ctx.flags.fuzz === 'string' ? parseInt(ctx.flags.fuzz, 10) : 2;
+    // Read the patch: a file arg, or stdin.
+    let patchText;
+    if (ctx.args[0]) {
+        try {
+            patchText = fs.readFileSync(path.resolve(root, ctx.args[0]), 'utf8');
+        }
+        catch {
+            output.printError(`could not read patch file ${ctx.args[0]}`);
+            return { success: false, exitCode: 1 };
+        }
+    }
+    else {
+        if (process.stdin.isTTY) {
+            output.writeln(output.error('Usage: swarmdo apply <patch-file>   OR   <patch> | swarmdo apply'));
+            return { success: false, exitCode: 1 };
+        }
+        patchText = await readStdin();
+    }
+    const patches = parsePatch(patchText);
+    if (patches.length === 0) {
+        output.printError('no file patches found — is this a unified diff?');
+        return { success: false, exitCode: 1 };
+    }
+    let totalApplied = 0;
+    let totalRejected = 0;
+    const writes = [];
+    for (const fp of patches) {
+        const file = targetFile(root, fp);
+        const rel = path.relative(root, file);
+        let source;
+        try {
+            source = fs.readFileSync(file, 'utf8');
+        }
+        catch {
+            // New-file patch (--- /dev/null): treat missing source as empty.
+            if (fp.oldPath === '/dev/null' || !fs.existsSync(file))
+                source = '';
+            else {
+                output.printError(`cannot read ${rel}`);
+                totalRejected += fp.hunks.length;
+                continue;
+            }
+        }
+        const res = applyPatch(source, fp, { fuzz });
+        const applied = res.hunks.filter((h) => h.applied).length;
+        const rejected = res.hunks.length - applied;
+        totalApplied += applied;
+        totalRejected += rejected;
+        const fuzzy = res.hunks.filter((h) => h.applied && (h.fuzzUsed ?? 0) > 0).length;
+        const tag = rejected === 0 ? output.dim('ok') : output.bold(`${rejected} rejected`);
+        output.writeln(`${rel}  ${applied}/${res.hunks.length} hunks${fuzzy ? output.dim(` (${fuzzy} fuzzy)`) : ''}  ${tag}`);
+        if (rejected === 0 || partial) {
+            if (res.result !== source)
+                writes.push({ file, content: res.result });
+        }
+    }
+    if (!dryRun) {
+        for (const w of writes)
+            fs.writeFileSync(w.file, w.content);
+    }
+    const verb = dryRun ? 'would apply' : 'applied';
+    output.writeln(output.dim(`${verb} ${totalApplied} hunks, ${totalRejected} rejected${dryRun ? ' (dry run)' : ''}`));
+    // Exit 1 if anything was rejected — a CI/agent can branch on it.
+    const code = totalRejected > 0 ? 1 : 0;
+    return { success: code === 0, exitCode: code };
+}
+export const applyCommand = {
+    name: 'apply',
+    description: 'Apply a unified diff to the working tree with fuzzy context matching — a forgiving `git apply` for agent-produced patches',
+    options: [
+        { name: 'dry-run', description: 'report what would apply/reject without writing', type: 'boolean' },
+        { name: 'fuzz', description: 'max context lines to drop when matching a drifted hunk (default 2)', type: 'string' },
+        { name: 'partial', description: 'write files even when some of their hunks are rejected', type: 'boolean' },
+    ],
+    examples: [
+        { command: 'swarmdo apply changes.patch', description: 'Apply a patch file' },
+        { command: 'cat out.diff | swarmdo apply --dry-run', description: 'Preview a patch from stdin' },
+        { command: 'swarmdo apply --fuzz 3 changes.patch', description: 'Tolerate more context drift' },
+    ],
+    action: run,
+};
+export default applyCommand;
+//# sourceMappingURL=apply.js.map

package/dist/src/commands/apply.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"apply.js","sourceRoot":"","sources":["../../../src/commands/apply.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAElC,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AACtC,OAAO,EAAE,UAAU,EAAE,UAAU,EAAkB,MAAM,mBAAmB,CAAC;AAE3E,SAAS,SAAS;IAChB,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QAC7B,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC7D,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC/E,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IACnF,CAAC,CAAC,CAAC;AACL,CAAC;AAED,+EAA+E;AAC/E,SAAS,UAAU,CAAC,IAAY,EAAE,EAAa;IAC7C,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,OAAO,IAAI,EAAE,CAAC,OAAO,KAAK,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC;AAChG,CAAC;AAED,KAAK,UAAU,GAAG,CAAC,GAAmB;IACpC,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IACtC,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,KAAK,IAAI,CAAC;IAC7C,MAAM,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,OAAO,KAAK,IAAI,CAAC;IAC3C,MAAM,IAAI,GAAG,OAAO,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAEnF,wCAAwC;IACxC,IAAI,SAAiB,CAAC;IACtB,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;QAChB,IAAI,CAAC;YAAC,SAAS,GAAG,EAAE,CAAC,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;QAAC,CAAC;QAC7E,MAAM,CAAC;YAAC,MAAM,CAAC,UAAU,CAAC,6BAA6B,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,CAAC;QAAC,CAAC;IAClH,CAAC;SAAM,CAAC;QACN,IAAI,OAAO,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;YACxB,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,kEAAkE,CAAC,CAAC,CAAC;YACjG,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,CAAC;QACzC,CAAC;QACD,SAAS,GAAG,MAAM,SAAS,EAAE,CAAC;IAChC,CAAC;IAED,MAAM,OAAO,GAAG,UAAU,CAAC,SAAS,CAAC,CAAC;IACtC,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,MAAM,CAAC,UAAU,CAAC,iDAAiD,CAAC,CAAC;QACrE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,CAAC;IACzC,CAAC;IAED,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,aAAa,GAAG,CAAC,CAAC;IACtB,MAAM,MAAM,GAA6C,EAAE,CAAC;IAE5D,KAAK,MAAM,EAAE,IAAI,OAAO,EAAE,CAAC;QACzB,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;QAClC,MAAM,GAAG,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;QACtC,IAAI,MAAc,CAAC;QACnB,IAAI,CAAC;YAAC,MAAM,GAAG,EAAE,CAAC,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;QAAC,CAAC;QAC/C,MAAM,CAAC;YACL,iEAAiE;YACjE,IAAI,EAAE,CAAC,OAAO,KAAK,WAAW,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC;gBAAE,MAAM,GAAG,EAAE,CAAC;iBAC/D,CAAC;gBAAC,MAAM,CAAC,UAAU,CAAC,eAAe,GAAG,EAAE,CAAC,CAAC;gBAAC,aAAa,IAAI,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC;gBAAC,SAAS;YAAC,CAAC;QAC/F,CAAC;QAED,MAAM,GAAG,GAAG,UAAU,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC;QAC7C,MAAM,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC;QAC1D,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,MAAM,GAAG,OAAO,CAAC;QAC5C,YAAY,IAAI,OAAO,CAAC;QACxB,aAAa,IAAI,QAAQ,CAAC;QAE1B,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,IAAI,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC;QACjF,MAAM,GAAG,GAAG,QAAQ,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,QAAQ,WAAW,CAAC,CAAC;QACpF,MAAM,CAAC,OAAO,CAAC,GAAG,GAAG,KAAK,OAAO,IAAI,GAAG,CAAC,KAAK,CAAC,MAAM,SAAS,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,EAAE,KAAK,GAAG,EAAE,CAAC,CAAC;QAEtH,IAAI,QAAQ,KAAK,CAAC,IAAI,OAAO,EAAE,CAAC;YAC9B,IAAI,GAAG,CAAC,MAAM,KAAK,MAAM;gBAAE,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC,CAAC;QACxE,CAAC;IACH,CAAC;IAED,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,KAAK,MAAM,CAAC,IAAI,MAAM;YAAE,EAAE,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,OAAO,CAAC,CAAC;IAC9D,CAAC;IAED,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC;IAChD,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,IAAI,IAAI,YAAY,WAAW,aAAa,YAAY,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAEpH,iEAAiE;IACjE,MAAM,IAAI,GAAG,aAAa,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvC,OAAO,EAAE,OAAO,EAAE,IAAI,KAAK,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;AACjD,CAAC;AAED,MAAM,CAAC,MAAM,YAAY,GAAY;IACnC,IAAI,EAAE,OAAO;IACb,WAAW,EAAE,2HAA2H;IACxI,OAAO,EAAE;QACP,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,gDAAgD,EAAE,IAAI,EAAE,SAAS,EAAE;QACnG,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,oEAAoE,EAAE,IAAI,EAAE,QAAQ,EAAE;QACnH,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,wDAAwD,EAAE,IAAI,EAAE,SAAS,EAAE;KAC5G;IACD,QAAQ,EAAE;QACR,EAAE,OAAO,EAAE,6BAA6B,EAAE,WAAW,EAAE,oBAAoB,EAAE;QAC7E,EAAE,OAAO,EAAE,wCAAwC,EAAE,WAAW,EAAE,4BAA4B,EAAE;QAChG,EAAE,OAAO,EAAE,sCAAsC,EAAE,WAAW,EAAE,6BAA6B,EAAE;KAChG;IACD,MAAM,EAAE,GAAG;CACZ,CAAC;AAEF,eAAe,YAAY,CAAC"}

package/dist/src/commands/compact.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"compact.d.ts","sourceRoot":"","sources":["../../../src/commands/compact.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AA4E1E,eAAO,MAAM,cAAc,EAAE,OAiB5B,CAAC;AAEF,eAAe,cAAc,CAAC"}
+{"version":3,"file":"compact.d.ts","sourceRoot":"","sources":["../../../src/commands/compact.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAGH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AA6E1E,eAAO,MAAM,cAAc,EAAE,OAiB5B,CAAC;AAEF,eAAe,cAAc,CAAC"}

package/dist/src/commands/compact.js

@@ -13,6 +13,7 @@
 import { spawnSync } from 'node:child_process';
 import { output } from '../output.js';
 import { compactOutput, formatSavings } from '../compact/compact.js';
+import { writeStdout } from '../util/stdout.js';
 /**
  * Read all of stdin as UTF-8. A stream read (not readFileSync(0)) — the
  * synchronous form throws EAGAIN on a non-blocking pipe on macOS/Linux.
@@ -61,7 +62,7 @@ async function run(ctx) {
         }
         const combined = (r.stdout || '') + (r.stderr || '');
         const { text, stats } = compactOutput(combined, opts);
-        process.stdout.write(text);
+        await writeStdout(text);
         if (!quiet)
             process.stderr.write(formatSavings(stats) + '\n');
         // Propagate the wrapped command's exit code verbatim.
@@ -81,7 +82,7 @@ async function run(ctx) {
     else if (!quiet) {
         process.stderr.write(formatSavings(stats) + '\n');
     }
-    process.stdout.write(text);
+    await writeStdout(text);
     return { success: true, exitCode: 0 };
 }
 export const compactCommand = {

package/dist/src/commands/compact.js.map

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package/dist/src/commands/index.js

@@ -35,6 +35,12 @@ const commandLoaders = {
     // GPL/unknown licenses in the tree, fail CI on a forbidden one.
     license: () => import('./license.js'),
     licenses: () => import('./license.js'), // alias via loader key
+    // Software Bill of Materials from the lockfile (syft/cyclonedx demand) —
+    // CycloneDX/SPDX JSON; completes the env/license/sbom supply-chain trio.
+    sbom: () => import('./sbom.js'),
+    // Fuzzy unified-diff applier (agent-diff pain) — a forgiving `git apply` that
+    // lands hunks despite context drift and reports what it couldn't.
+    apply: () => import('./apply.js'),
     // Queryable exported-symbol index (codegraph demand) — where things are
     // defined without grep+read round-trips.
     codegraph: () => import('./codegraph.js'),
@@ -268,7 +274,7 @@ export async function getCommandsByCategory() {
     // three slots from 'statusline' onward (completionsCmd received the
     // statusline module, analyzeCmd received completions, …), scrambling the
     // categorized help. Every load now has a named slot.
-    const [daemonCmd, doctorCmd, embeddingsCmd, neuralCmd, performanceCmd, securityCmd, swarmvectorCmd, hiveMindCmd, configCmd, statuslineCmd, compressCmd, efficiencyCmd, completionsCmd, migrateCmd, workflowCmd, analyzeCmd, routeCmd, progressCmd, providersCmd, pluginsCmd, deploymentCmd, claimsCmd, issuesCmd, updateCmd, processCmd, guidanceCmd, applianceCmd, cleanupCmd, autopilotCmd, demoCmd, usageCmd, repairCmd, hudCmd, compactCmd, codegraphCmd, redactCmd, packCmd, envCmd, licenseCmd,] = await Promise.all([
+    const [daemonCmd, doctorCmd, embeddingsCmd, neuralCmd, performanceCmd, securityCmd, swarmvectorCmd, hiveMindCmd, configCmd, statuslineCmd, compressCmd, efficiencyCmd, completionsCmd, migrateCmd, workflowCmd, analyzeCmd, routeCmd, progressCmd, providersCmd, pluginsCmd, deploymentCmd, claimsCmd, issuesCmd, updateCmd, processCmd, guidanceCmd, applianceCmd, cleanupCmd, autopilotCmd, demoCmd, usageCmd, repairCmd, hudCmd, compactCmd, codegraphCmd, redactCmd, packCmd, envCmd, licenseCmd, sbomCmd, applyCmd,] = await Promise.all([
         loadCommand('daemon'), loadCommand('doctor'), loadCommand('embeddings'), loadCommand('neural'),
         loadCommand('performance'), loadCommand('security'), loadCommand('swarmvector'), loadCommand('hive-mind'),
         loadCommand('config'), loadCommand('statusline'), loadCommand('compress'), loadCommand('efficiency'),
@@ -276,7 +282,7 @@ export async function getCommandsByCategory() {
         loadCommand('analyze'), loadCommand('route'), loadCommand('progress'), loadCommand('providers'),
         loadCommand('plugins'), loadCommand('deployment'), loadCommand('claims'), loadCommand('issues'),
         loadCommand('update'), loadCommand('process'), loadCommand('guidance'), loadCommand('appliance'),
-        loadCommand('cleanup'), loadCommand('autopilot'), loadCommand('demo'), loadCommand('usage'), loadCommand('repair'), loadCommand('hud'), loadCommand('compact'), loadCommand('codegraph'), loadCommand('redact'), loadCommand('pack'), loadCommand('env'), loadCommand('license'),
+        loadCommand('cleanup'), loadCommand('autopilot'), loadCommand('demo'), loadCommand('usage'), loadCommand('repair'), loadCommand('hud'), loadCommand('compact'), loadCommand('codegraph'), loadCommand('redact'), loadCommand('pack'), loadCommand('env'), loadCommand('license'), loadCommand('sbom'), loadCommand('apply'),
     ]);
     return {
         primary: [
@@ -292,7 +298,7 @@ export async function getCommandsByCategory() {
         utility: [
             configCmd, doctorCmd, daemonCmd, completionsCmd,
             migrateCmd, workflowCmd, demoCmd,
-            statuslineCmd, compressCmd, compactCmd, redactCmd, packCmd, envCmd, licenseCmd, efficiencyCmd,
+            statuslineCmd, compressCmd, compactCmd, redactCmd, packCmd, envCmd, licenseCmd, sbomCmd, applyCmd, efficiencyCmd,
         ].filter(Boolean),
         analysis: [
             analyzeCmd, routeCmd, progressCmd, usageCmd, hudCmd, codegraphCmd,

package/dist/src/commands/index.js.map

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package/dist/src/commands/pack.js

@@ -17,6 +17,7 @@ import * as path from 'node:path';
 import { output } from '../output.js';
 import { packFiles, makeIgnoreMatcher } from '../pack/pack.js';
 import { redactText } from '../redact/redact.js';
+import { writeStdout } from '../util/stdout.js';
 const SKIP_DIRS = new Set([
     'node_modules', '.git', '.swarm', 'dist', 'dist-standalone', 'build',
     'coverage', '.next', '.turbo', 'out', 'vendor', '.cache',
@@ -151,8 +152,7 @@ async function run(ctx) {
         output.printSuccess(`packed ${stats.files} files (~${stats.tokens} tokens) → ${outFile}`);
     }
     else {
-        process.stdout.write(bundle);
-        if (!process.stdout.isTTY) { /* piped: keep stdout clean */ }
+        await writeStdout(bundle);
         process.stderr.write(output.dim(`packed ${stats.files} files (~${stats.tokens} tokens)\n`));
     }
     return { success: true, exitCode: 0 };