@sushanglewis/lincoln 1.5.2 → 1.5.4

package/dist/main.js

@@ -15,7 +15,9 @@ var BOOLEAN_FLAGS = /* @__PURE__ */ new Set([
   "json",
   "help",
   "h",
-  "no-venv"
+  "no-venv",
+  "version",
+  "v"
 ]);
 function parseArgs(argv) {
   const args = argv.slice(2);
@@ -1313,9 +1315,15 @@ Options:
   --check          Check for available updates without installing (update)
   --json           Output machine-readable JSON (where supported)
   --help, -h       Show this help message
+  --version, -v    Show the installed Lincoln version
 `;
 async function main(argv) {
   const parsed = parseArgs(argv);
+  if (parsed.flags.version || parsed.flags.v) {
+    const version = readLocalPackageVersion();
+    console.log(version ? `Lincoln ${version}` : "Lincoln (unknown version)");
+    return 0;
+  }
   if (parsed.command === "help") {
     console.log(USAGE);
     return 0;

package/dist/main.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/main.ts","../src/cli.ts","../src/commands/doctor.ts","../src/lib/paths.ts","../src/lib/versionMarker.ts","../src/lib/packageInfo.ts","../src/lib/marker.ts","../src/commands/initProject.ts","../src/commands/install.ts","../src/lib/syncClaude.ts","../src/lib/claudeMdMerge.ts","../src/lib/harnessDetect.ts","../src/commands/update.ts","../src/lib/npmRegistry.ts","../src/lib/semver.ts","../src/commands/use.ts","../src/commands/migrateProject.ts","../src/lib/projectFiles.ts","../src/commands/record.ts"],"sourcesContent":["import fs from 'node:fs'\nimport path from 'node:path'\nimport { fileURLToPath } from 'node:url'\nimport { parseArgs } from './cli.js'\nimport { doctor } from './commands/doctor.js'\nimport { initProject } from './commands/initProject.js'\nimport { install } from './commands/install.js'\nimport { update } from './commands/update.js'\nimport { use } from './commands/use.js'\nimport { migrateProject } from './commands/migrateProject.js'\nimport { record } from './commands/record.js'\n\nconst USAGE = `Lincoln — Global agent harness plugin CLI\n\nUsage:\n  lincoln <command> [options]\n\nCommands:\n  install          One-time global setup: sync to ~/.claude/, ~/.codex/, ~/.opencode/\n  update           Pull latest release and re-sync globally\n  use <version>   Switch active global version\n  doctor           Diagnose harness integration\n  init-project     Create .lincoln.yaml in current project\n  migrate-project  Remove vendored framework files from an existing project\n  record           Launch the Lincoln interview recorder TUI\n  help             Show this help message\n\nOptions:\n  --yes, -y        Skip confirmation prompts\n  --dry-run        Show what would be done without making changes\n  --force          Force re-install even if up to date\n  --check          Check for available updates without installing (update)\n  --json           Output machine-readable JSON (where supported)\n  --help, -h       Show this help message\n`\n\nexport async function main(argv: string[]): Promise<number> {\n  const parsed = parseArgs(argv)\n\n  if (parsed.command === 'help') {\n    console.log(USAGE)\n    return 0\n  }\n\n  if (parsed.command === 'install') {\n    return install({\n      yes: Boolean(parsed.flags.yes || parsed.flags.y),\n      dryRun: Boolean(parsed.flags['dry-run']),\n      force: Boolean(parsed.flags.force),\n      harnesses: parsed.args,\n      noVenv: Boolean(parsed.flags['no-venv'])\n    })\n  }\n\n  if (parsed.command === 'update') {\n    return update({\n      check: Boolean(parsed.flags.check),\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y)\n    })\n  }\n\n  if (parsed.command === 'use') {\n    const version = parsed.args[0]\n    if (!version) {\n      console.error('Usage: lincoln use <version> [--yes] [--dry-run]')\n      return 1\n    }\n    return use(version, {\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y)\n    })\n  }\n\n  if (parsed.command === 'doctor') {\n    const result = await doctor({ json: Boolean(parsed.flags.json) })\n    return result.code\n  }\n\n  if (parsed.command === 'init-project') {\n    return initProject(process.cwd(), {\n      force: Boolean(parsed.flags.force),\n      dryRun: Boolean(parsed.flags['dry-run'])\n    })\n  }\n\n  if (parsed.command === 'migrate-project') {\n    return migrateProject(process.cwd(), {\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y),\n      force: Boolean(parsed.flags.force)\n    })\n  }\n\n  if (parsed.command === 'record') {\n    return record(parsed.args)\n  }\n\n  console.log(USAGE)\n  return 0\n}\n\nif (\n  process.argv[1] &&\n  path.resolve(fs.realpathSync(fileURLToPath(import.meta.url))) ===\n    path.resolve(fs.realpathSync(process.argv[1]))\n) {\n  main(process.argv).then((code) => process.exit(code))\n}\n","export interface ParsedArgs {\n  command: string\n  args: string[]\n  flags: Record<string, unknown>\n}\n\n/**\n * Flags that never take a value. Boolean flags must not consume the next\n * token, otherwise `lincoln use --yes 1.6.0` would swallow the positional\n * version argument into `flags.yes`.\n */\nconst BOOLEAN_FLAGS = new Set([\n  'yes',\n  'y',\n  'dry-run',\n  'force',\n  'check',\n  'json',\n  'help',\n  'h',\n  'no-venv'\n])\n\nexport function parseArgs(argv: string[]): ParsedArgs {\n  const args = argv.slice(2)\n  const flags: Record<string, unknown> = {}\n  const positional: string[] = []\n\n  for (let i = 0; i < args.length; i++) {\n    const arg = args[i]\n    if (arg.startsWith('--')) {\n      const key = arg.replace(/^--/, '')\n      const next = args[i + 1]\n      if (!BOOLEAN_FLAGS.has(key) && next && !next.startsWith('-')) {\n        flags[key] = next\n        i++\n      } else {\n        flags[key] = true\n      }\n    } else if (arg.startsWith('-')) {\n      const key = arg.replace(/^-/, '')\n      const next = args[i + 1]\n      if (!BOOLEAN_FLAGS.has(key) && next && !next.startsWith('-')) {\n        flags[key] = next\n        i++\n      } else {\n        flags[key] = true\n      }\n    } else {\n      positional.push(arg)\n    }\n  }\n\n  const command = positional[0] || 'help'\n  const validCommands = new Set([\n    'install',\n    'update',\n    'use',\n    'doctor',\n    'init-project',\n    'migrate-project',\n    'record',\n    'help',\n    '--help',\n    '-h'\n  ])\n\n  if (command === 'help' || command === '--help' || command === '-h') {\n    return { command: 'help', args: positional.slice(1), flags }\n  }\n\n  if (!validCommands.has(command)) {\n    return { command: 'help', args: positional, flags }\n  }\n\n  return { command, args: positional.slice(1), flags }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { readVersionMarker } from '../lib/versionMarker.js'\n\nexport interface DoctorCheck {\n  name: string\n  status: 'ok' | 'warn' | 'skip' | 'error'\n  message: string\n}\n\nexport interface DoctorOptions {\n  json?: boolean\n}\n\nexport interface DoctorDeps {\n  paths: LincolnPaths\n  nodeVersion: () => string\n  pythonVersion: () => Promise<string | undefined>\n  pyyamlVersion: () => Promise<string | undefined>\n  npmVersion: () => Promise<string | undefined>\n  projectRoot: string\n}\n\nexport interface DoctorResult {\n  code: number\n  checks: DoctorCheck[]\n}\n\nconst MIN_NODE_MAJOR = 20\nconst MIN_PYTHON_MAJOR = 3\nconst MIN_PYTHON_MINOR = 10\n\nexport function createDefaultDeps(): DoctorDeps {\n  const paths = resolveLincolnPaths()\n  const pythonCommand = resolvePythonCommand(paths)\n  return {\n    paths,\n    nodeVersion: () => process.version,\n    pythonVersion: () => queryCommandVersion(pythonCommand, ['--version']),\n    pyyamlVersion: () => queryPyyamlVersion(pythonCommand),\n    npmVersion: () => queryCommandVersion('npm', ['--version']),\n    projectRoot: process.cwd()\n  }\n}\n\nexport async function doctor(\n  options: DoctorOptions = {},\n  deps: DoctorDeps = createDefaultDeps()\n): Promise<DoctorResult> {\n  const checks: DoctorCheck[] = []\n\n  checks.push(checkNode(deps.nodeVersion()))\n  checks.push(await checkPython(deps.pythonVersion))\n  checks.push(await checkPyyaml(deps.pyyamlVersion))\n  checks.push(await checkNpm(deps.npmVersion))\n  checks.push(checkGlobalMarker(deps.paths))\n  checks.push(checkPayloadHooks(deps.paths))\n  checks.push(checkVenv(deps.paths))\n  checks.push(checkProjectMarker(deps.projectRoot))\n\n  const hasError = checks.some((c) => c.status === 'error')\n  const result: DoctorResult = { code: hasError ? 1 : 0, checks }\n\n  if (options.json) {\n    console.log(JSON.stringify({ checks }, null, 2))\n  } else {\n    for (const check of checks) {\n      const icon = check.status === 'ok' ? '✓' : check.status === 'error' ? '✗' : check.status === 'warn' ? '!' : '-'\n      console.log(`${icon} ${check.name}: ${check.message}`)\n    }\n    if (hasError) {\n      console.error('\\nOne or more checks failed.')\n    }\n  }\n\n  return result\n}\n\nfunction checkNode(version: string): DoctorCheck {\n  const major = parseNodeMajor(version)\n  if (major === undefined) {\n    return { name: 'node', status: 'warn', message: `Could not parse Node version: ${version}` }\n  }\n  if (major < MIN_NODE_MAJOR) {\n    return { name: 'node', status: 'error', message: `Node ${version} is below the minimum required v${MIN_NODE_MAJOR}` }\n  }\n  return { name: 'node', status: 'ok', message: `Node ${version}` }\n}\n\nasync function checkPython(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = (await query())?.trim()\n  if (!version) {\n    return { name: 'python', status: 'error', message: 'Python 3 is not available' }\n  }\n  const parsed = parsePythonVersion(version)\n  if (!parsed) {\n    return { name: 'python', status: 'warn', message: `Could not parse Python version: ${version}` }\n  }\n  if (parsed.major < MIN_PYTHON_MAJOR || (parsed.major === MIN_PYTHON_MAJOR && parsed.minor < MIN_PYTHON_MINOR)) {\n    return {\n      name: 'python',\n      status: 'error',\n      message: `Python ${version} is below the minimum required ${MIN_PYTHON_MAJOR}.${MIN_PYTHON_MINOR}`\n    }\n  }\n  const display = version.replace(/^Python\\s+/, '')\n  return { name: 'python', status: 'ok', message: `Python ${display}` }\n}\n\nasync function checkPyyaml(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = await query()\n  if (!version) {\n    return { name: 'pyyaml', status: 'error', message: 'PyYAML is not installed for Python 3' }\n  }\n  return { name: 'pyyaml', status: 'ok', message: `PyYAML ${version}` }\n}\n\nasync function checkNpm(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = await query()\n  if (!version) {\n    return { name: 'npm', status: 'warn', message: 'npm is not available' }\n  }\n  return { name: 'npm', status: 'ok', message: `npm ${version}` }\n}\n\nfunction checkGlobalMarker(paths: LincolnPaths): DoctorCheck {\n  const marker = readVersionMarker(paths)\n  if (!marker) {\n    return { name: 'global-marker', status: 'warn', message: `No version marker at ${paths.versionMarker}` }\n  }\n  return { name: 'global-marker', status: 'ok', message: `Lincoln ${marker.version} installed` }\n}\n\nfunction checkPayloadHooks(paths: LincolnPaths): DoctorCheck {\n  const hooksDir = path.join(paths.currentDir, '.claude', 'hooks')\n  if (!fs.existsSync(hooksDir)) {\n    return { name: 'payload-hooks', status: 'warn', message: `Payload hooks not found at ${hooksDir}` }\n  }\n  const required = ['on-session-start.sh']\n  const missing = required.filter((f) => !fs.existsSync(path.join(hooksDir, f)))\n  if (missing.length > 0) {\n    return { name: 'payload-hooks', status: 'warn', message: `Missing hooks: ${missing.join(', ')}` }\n  }\n  return { name: 'payload-hooks', status: 'ok', message: `Payload hooks present at ${hooksDir}` }\n}\n\nfunction checkVenv(paths: LincolnPaths): DoctorCheck {\n  if (!fs.existsSync(paths.venvDir)) {\n    return { name: 'venv', status: 'warn', message: `Virtual environment not found at ${paths.venvDir}` }\n  }\n  const pythonExe = path.join(paths.venvDir, process.platform === 'win32' ? 'Scripts' : 'bin', 'python')\n  if (!fs.existsSync(pythonExe)) {\n    return { name: 'venv', status: 'warn', message: `Virtual environment exists but python executable is missing` }\n  }\n  return { name: 'venv', status: 'ok', message: `Virtual environment present at ${paths.venvDir}` }\n}\n\nfunction checkProjectMarker(projectRoot: string): DoctorCheck {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (!fs.existsSync(markerPath)) {\n    return { name: 'project-marker', status: 'skip', message: `No .lincoln.yaml in ${projectRoot}` }\n  }\n  return { name: 'project-marker', status: 'ok', message: `Project marker found at ${markerPath}` }\n}\n\nfunction resolvePythonCommand(paths: LincolnPaths): string {\n  const venvPython = path.join(\n    paths.venvDir,\n    process.platform === 'win32' ? 'Scripts' : 'bin',\n    process.platform === 'win32' ? 'python.exe' : 'python'\n  )\n  if (fs.existsSync(venvPython)) {\n    return venvPython\n  }\n  return 'python3'\n}\n\nfunction parseNodeMajor(version: string): number | undefined {\n  const match = /^v?(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return Number(match[1])\n}\n\nfunction parsePythonVersion(version: string): { major: number; minor: number } | undefined {\n  const match = /(\\d+)\\.(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return { major: Number(match[1]), minor: Number(match[2]) }\n}\n\nasync function queryCommandVersion(command: string, args: string[]): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(command, args, {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n\nasync function queryPyyamlVersion(pythonCommand: string): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(\n      pythonCommand,\n      ['-c', 'import yaml; print(yaml.__version__)'],\n      { stdio: ['ignore', 'pipe', 'ignore'], shell: process.platform === 'win32' }\n    )\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n","import path from 'node:path'\nimport os from 'node:os'\n\nexport interface LincolnPaths {\n  homeDir: string\n  lincolnHome: string\n  versionsDir: string\n  currentDir: string\n  versionMarker: string\n  venvDir: string\n  claudeDir: string\n  codexDir: string\n  opencodeDir: string\n}\n\nexport function resolveLincolnPaths(overrideHomeDir?: string): LincolnPaths {\n  const homeDir = overrideHomeDir ?? os.homedir()\n  const lincolnHome = process.env.LINCOLN_HOME\n    ? path.resolve(process.env.LINCOLN_HOME)\n    : path.join(homeDir, '.lincoln')\n\n  return {\n    homeDir,\n    lincolnHome,\n    versionsDir: path.join(lincolnHome, 'versions'),\n    currentDir: path.join(lincolnHome, 'current'),\n    versionMarker: path.join(lincolnHome, 'marker.json'),\n    venvDir: path.join(lincolnHome, 'venv'),\n    claudeDir: path.join(homeDir, '.claude'),\n    codexDir: path.join(homeDir, '.codex'),\n    opencodeDir: path.join(homeDir, '.opencode')\n  }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport type { LincolnPaths } from './paths.js'\n\nexport interface VersionMarker {\n  version: string\n  installedAt: string\n  harnesses: string[]\n  managedFiles: string[]\n}\n\nexport function readVersionMarker(paths: LincolnPaths): VersionMarker | undefined {\n  try {\n    const raw = fs.readFileSync(paths.versionMarker, 'utf8')\n    const parsed = JSON.parse(raw) as VersionMarker\n    if (\n      typeof parsed.version === 'string' &&\n      typeof parsed.installedAt === 'string' &&\n      Array.isArray(parsed.harnesses)\n    ) {\n      return parsed\n    }\n    return undefined\n  } catch {\n    return undefined\n  }\n}\n\nexport function writeVersionMarker(\n  paths: LincolnPaths,\n  marker: VersionMarker\n): void {\n  fs.mkdirSync(path.dirname(paths.versionMarker), { recursive: true })\n  fs.writeFileSync(paths.versionMarker, JSON.stringify(marker, null, 2) + '\\n')\n}\n\nexport function isUpToDate(paths: LincolnPaths, version: string): boolean {\n  const marker = readVersionMarker(paths)\n  return marker?.version === version\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { fileURLToPath } from 'node:url'\n\n/**\n * Finds the directory containing the running lincoln package's package.json.\n * Returns undefined when no package.json can be located.\n */\nexport function readLocalPackageRoot(): string | undefined {\n  try {\n    let dir = path.dirname(fileURLToPath(import.meta.url))\n    const root = path.parse(dir).root\n    while (dir !== root) {\n      const pkgPath = path.join(dir, 'package.json')\n      if (fs.existsSync(pkgPath)) {\n        const parsed = JSON.parse(fs.readFileSync(pkgPath, 'utf8')) as { name?: string }\n        if (parsed.name === '@sushanglewis/lincoln') {\n          return dir\n        }\n      }\n      dir = path.dirname(dir)\n    }\n  } catch {\n    // ignore and return undefined\n  }\n  return undefined\n}\n\n/**\n * Reads the version of the running lincoln package from its own package.json.\n * Walks upward from the current module file until it finds the package.json.\n * Returns undefined when the package.json cannot be located or parsed.\n */\nexport function readLocalPackageVersion(): string | undefined {\n  try {\n    const root = readLocalPackageRoot()\n    if (!root) return undefined\n    const parsed = JSON.parse(fs.readFileSync(path.join(root, 'package.json'), 'utf8')) as {\n      version?: string\n    }\n    return typeof parsed.version === 'string' ? parsed.version : undefined\n  } catch {\n    return undefined\n  }\n}\n\n/**\n * Resolves the bundled framework payload directory inside the running package.\n */\nexport function resolvePayloadRoot(): string | undefined {\n  const root = readLocalPackageRoot()\n  if (!root) return undefined\n  const payload = path.join(root, 'framework')\n  return fs.existsSync(payload) ? payload : undefined\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport yaml from 'js-yaml'\n\nexport interface ProjectMarker {\n  enabled: boolean\n  workflow_template?: string\n  min_lincoln_version?: string\n}\n\nexport interface WriteMarkerOptions {\n  force?: boolean\n  dryRun?: boolean\n}\n\nexport function readProjectMarker(projectRoot: string): ProjectMarker | undefined {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (!fs.existsSync(markerPath)) {\n    return undefined\n  }\n  try {\n    const parsed = yaml.load(fs.readFileSync(markerPath, 'utf8')) as Record<string, unknown> | null | undefined\n    if (!parsed || typeof parsed !== 'object') {\n      return undefined\n    }\n    return {\n      enabled: Boolean(parsed.enabled),\n      workflow_template: typeof parsed.workflow_template === 'string' ? parsed.workflow_template : undefined,\n      min_lincoln_version: typeof parsed.min_lincoln_version === 'string' ? parsed.min_lincoln_version : undefined\n    }\n  } catch {\n    return undefined\n  }\n}\n\nexport function writeProjectMarker(\n  projectRoot: string,\n  marker: ProjectMarker,\n  opts: WriteMarkerOptions = {}\n): void {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (fs.existsSync(markerPath) && !opts.force) {\n    throw new Error(`.lincoln.yaml already exists at ${markerPath}; use --force to overwrite`)\n  }\n  const content = yaml.dump(marker, { sortKeys: false, lineWidth: -1 })\n  if (!opts.dryRun) {\n    fs.mkdirSync(projectRoot, { recursive: true })\n    fs.writeFileSync(markerPath, content)\n  }\n}\n","import { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { writeProjectMarker, readProjectMarker } from '../lib/marker.js'\n\nexport interface InitProjectOptions {\n  force?: boolean\n  dryRun?: boolean\n}\n\nexport function initProject(projectRoot: string, options: InitProjectOptions = {}): number {\n  if (!options.force && readProjectMarker(projectRoot) !== undefined) {\n    console.error(`Project already has a .lincoln.yaml. Use --force to overwrite.`)\n    return 1\n  }\n\n  try {\n    writeProjectMarker(\n      projectRoot,\n      {\n        enabled: true,\n        workflow_template: 'interview-to-knowledge',\n        min_lincoln_version: readLocalPackageVersion() ?? '1.5.0'\n      },\n      { force: options.force, dryRun: options.dryRun }\n    )\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to write .lincoln.yaml: ${message}`)\n    return 1\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would create ${projectRoot}/.lincoln.yaml`)\n  } else {\n    console.log(`Created ${projectRoot}/.lincoln.yaml`)\n  }\n  return 0\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { writeVersionMarker } from '../lib/versionMarker.js'\nimport { readLocalPackageVersion, resolvePayloadRoot } from '../lib/packageInfo.js'\nimport type { SyncReport } from '../lib/syncClaude.js'\nimport { syncClaudeCode } from '../lib/syncClaude.js'\nimport { installedHarnessIds } from '../lib/harnessDetect.js'\n\nexport interface InstallOptions {\n  yes: boolean\n  dryRun: boolean\n  force: boolean\n  harnesses: string[]\n  noVenv: boolean\n}\n\nexport interface InstallDeps {\n  paths: LincolnPaths\n  payloadRoot: string\n  syncClaude: (opts: {\n    payloadRoot: string\n    targetDir: string\n    version: string\n    dryRun: boolean\n  }) => SyncReport\n}\n\nexport function createDefaultDeps(): InstallDeps {\n  return {\n    paths: resolveLincolnPaths(),\n    payloadRoot: resolvePayloadRoot() || '',\n    syncClaude: syncClaudeCode\n  }\n}\n\nexport async function install(\n  options: InstallOptions,\n  deps: InstallDeps = createDefaultDeps()\n): Promise<number> {\n  if (!options.dryRun && !options.yes) {\n    console.error('This will install Lincoln globally. Run with --yes to proceed.')\n    return 1\n  }\n\n  const version = readLocalPackageVersion()\n  if (!version) {\n    console.error('Could not determine Lincoln version')\n    return 1\n  }\n\n  const harnesses =\n    options.harnesses.length > 0 ? options.harnesses : installedHarnessIds(deps.paths.homeDir)\n\n  if (harnesses.length === 0) {\n    console.error('No agent harness detected. Install Claude Code, Codex, or OpenCode first.')\n    return 1\n  }\n\n  const payloadRoot = deps.payloadRoot\n  if (!payloadRoot || !fs.existsSync(payloadRoot)) {\n    console.error(\n      `Lincoln payload not found. Run \"npm install -g @sushanglewis/lincoln\" first.`\n    )\n    return 1\n  }\n\n  const versionDir = path.join(deps.paths.versionsDir, version)\n  if (!options.dryRun) {\n    fs.mkdirSync(versionDir, { recursive: true })\n    fs.cpSync(payloadRoot, versionDir, { recursive: true, force: true })\n    try {\n      fs.rmSync(deps.paths.currentDir, { recursive: true, force: true })\n      fs.symlinkSync(versionDir, deps.paths.currentDir)\n    } catch {\n      fs.rmSync(deps.paths.currentDir, { recursive: true, force: true })\n      fs.cpSync(versionDir, deps.paths.currentDir, { recursive: true, force: true })\n    }\n  }\n\n  const report = deps.syncClaude({\n    payloadRoot: deps.paths.currentDir,\n    targetDir: deps.paths.claudeDir,\n    version,\n    dryRun: options.dryRun\n  })\n\n  if (!options.dryRun && !options.noVenv) {\n    const python = await resolvePythonForVenv()\n    if (!python) {\n      console.error(\n        'Python 3.10+ is required but was not found. Set LINCOLN_PYTHON to a compatible Python executable.'\n      )\n      return 1\n    }\n    await setupVenv(deps.paths, payloadRoot, python)\n  }\n\n  if (!options.dryRun) {\n    writeVersionMarker(deps.paths, {\n      version,\n      installedAt: new Date().toISOString(),\n      harnesses,\n      managedFiles: report.written\n    })\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would install Lincoln ${version} for harnesses: ${harnesses.join(', ')}`)\n    console.log(`Would write ${report.written.length} files`)\n  } else {\n    console.log(`Installed Lincoln ${version} for harnesses: ${harnesses.join(', ')}`)\n    console.log(`Wrote ${report.written.length} files`)\n  }\n\n  return 0\n}\n\nfunction runCommand(command: string, args: string[]): Promise<number> {\n  return new Promise((resolvePromise, rejectPromise) => {\n    const child = spawn(command, args, { stdio: 'inherit' })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', (err) => rejectPromise(err))\n  })\n}\n\nconst MIN_PYTHON_MAJOR = 3\nconst MIN_PYTHON_MINOR = 10\nconst DEFAULT_PYTHON_CANDIDATES = ['python3.12', 'python3.11', 'python3.10', 'python3']\n\nfunction parsePythonVersion(version: string): { major: number; minor: number } | undefined {\n  const match = /(\\d+)\\.(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return { major: Number(match[1]), minor: Number(match[2]) }\n}\n\nasync function queryPythonVersion(command: string): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(command, ['--version'], {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n\nexport async function resolvePythonForVenv(\n  envOverride: string | undefined = process.env.LINCOLN_PYTHON,\n  candidates: string[] = DEFAULT_PYTHON_CANDIDATES,\n  queryVersion: (cmd: string) => Promise<string | undefined> = queryPythonVersion\n): Promise<string | undefined> {\n  const list = envOverride ? [envOverride] : candidates\n  for (const cmd of list) {\n    const version = await queryVersion(cmd)\n    if (!version) {\n      continue\n    }\n    const parsed = parsePythonVersion(version)\n    if (\n      parsed &&\n      parsed.major >= MIN_PYTHON_MAJOR &&\n      (parsed.major > MIN_PYTHON_MAJOR || parsed.minor >= MIN_PYTHON_MINOR)\n    ) {\n      return cmd\n    }\n  }\n  return undefined\n}\n\nasync function setupVenv(paths: LincolnPaths, payloadRoot: string, pythonCommand: string): Promise<void> {\n  const pythonExe = path.join(\n    paths.venvDir,\n    process.platform === 'win32' ? 'Scripts' : 'bin',\n    process.platform === 'win32' ? 'python.exe' : 'python'\n  )\n\n  if (!fs.existsSync(pythonExe)) {\n    console.log('Creating Lincoln virtual environment...')\n    await runCommand(pythonCommand, ['-m', 'venv', paths.venvDir])\n  }\n\n  const requirementsPath = path.join(payloadRoot, 'requirements.txt')\n  if (fs.existsSync(requirementsPath)) {\n    console.log('Installing Python dependencies...')\n    const pipExe = path.join(\n      paths.venvDir,\n      process.platform === 'win32' ? 'Scripts' : 'bin',\n      process.platform === 'win32' ? 'pip.exe' : 'pip'\n    )\n    await runCommand(pipExe, ['install', '-r', requirementsPath])\n  }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport crypto from 'node:crypto'\nimport { mergeManagedBlock } from './claudeMdMerge.js'\n\nexport interface SyncOptions {\n  payloadRoot: string\n  targetDir: string\n  version: string\n  dryRun: boolean\n}\n\nexport interface SyncReport {\n  written: string[]\n  skipped: string[]\n  preserved: string[]\n  warnings: string[]\n  settingsTouched?: string[]\n}\n\nconst COPY_SUBDIRS = [\n  'agents',\n  'skills',\n  'workflows',\n  'stages',\n  'schemas',\n  'templates',\n  'harnesses'\n]\n\nfunction sha256(filePath: string): string {\n  const data = fs.readFileSync(filePath)\n  return crypto.createHash('sha256').update(data).digest('hex')\n}\n\nfunction sameContent(a: string, b: string): boolean {\n  return sha256(a) === sha256(b)\n}\n\nfunction deepMergeSettings(existing: unknown, incoming: unknown): unknown {\n  if (Array.isArray(existing) && Array.isArray(incoming)) {\n    return incoming\n  }\n  if (\n    typeof existing === 'object' &&\n    existing !== null &&\n    typeof incoming === 'object' &&\n    incoming !== null\n  ) {\n    const result: Record<string, unknown> = { ...existing }\n    for (const [key, value] of Object.entries(incoming)) {\n      if (key in result) {\n        result[key] = deepMergeSettings(result[key], value)\n      } else {\n        result[key] = value\n      }\n    }\n    return result\n  }\n  return incoming\n}\n\nexport function syncClaudeCode(opts: SyncOptions): SyncReport {\n  const report: SyncReport = {\n    written: [],\n    skipped: [],\n    preserved: [],\n    warnings: [],\n    settingsTouched: []\n  }\n\n  const payloadClaude = path.join(opts.payloadRoot, '.claude')\n  if (!fs.existsSync(payloadClaude)) {\n    report.warnings.push(`payload .claude directory not found: ${payloadClaude}`)\n    return report\n  }\n\n  if (!opts.dryRun) {\n    fs.mkdirSync(opts.targetDir, { recursive: true })\n  }\n\n  for (const subdir of COPY_SUBDIRS) {\n    const srcDir = path.join(payloadClaude, subdir)\n    if (!fs.existsSync(srcDir)) {\n      continue\n    }\n\n    const destDir = path.join(opts.targetDir, subdir)\n    if (!opts.dryRun) {\n      fs.mkdirSync(destDir, { recursive: true })\n    }\n\n    for (const entry of walkSync(srcDir)) {\n      const relativePath = path.relative(srcDir, entry)\n      const srcFile = entry\n      const destFile = path.join(destDir, relativePath)\n\n      if (fs.existsSync(destFile) && sameContent(srcFile, destFile)) {\n        report.skipped.push(path.join('.claude', subdir, relativePath))\n        continue\n      }\n\n      if (!opts.dryRun) {\n        fs.mkdirSync(path.dirname(destFile), { recursive: true })\n        fs.copyFileSync(srcFile, destFile)\n      }\n      report.written.push(path.join('.claude', subdir, relativePath))\n    }\n  }\n\n  // settings.json merge\n  const payloadSettings = path.join(payloadClaude, 'settings.json')\n  const targetSettings = path.join(opts.targetDir, 'settings.json')\n  if (fs.existsSync(payloadSettings)) {\n    const incoming = JSON.parse(fs.readFileSync(payloadSettings, 'utf8'))\n    let merged = incoming\n    if (fs.existsSync(targetSettings)) {\n      const existing = JSON.parse(fs.readFileSync(targetSettings, 'utf8'))\n      merged = deepMergeSettings(existing, incoming)\n    }\n\n    const wouldChange =\n      !fs.existsSync(targetSettings) ||\n      JSON.stringify(merged) !== JSON.stringify(JSON.parse(fs.readFileSync(targetSettings, 'utf8')))\n\n    if (wouldChange) {\n      if (!opts.dryRun) {\n        fs.writeFileSync(targetSettings, JSON.stringify(merged, null, 2) + '\\n')\n      }\n      report.written.push('.claude/settings.json')\n      report.settingsTouched = ['.claude/settings.json']\n    } else {\n      report.skipped.push('.claude/settings.json')\n    }\n  }\n\n  // CLAUDE.md merge\n  const payloadClaudeMd = path.join(opts.payloadRoot, 'CLAUDE.md')\n  const targetClaudeMd = path.join(path.dirname(opts.targetDir), 'CLAUDE.md')\n  if (fs.existsSync(payloadClaudeMd)) {\n    const incomingBlock = fs.readFileSync(payloadClaudeMd, 'utf8')\n    const existing = fs.existsSync(targetClaudeMd)\n      ? fs.readFileSync(targetClaudeMd, 'utf8')\n      : undefined\n    const merged = mergeManagedBlock(existing, incomingBlock)\n\n    if (merged !== existing) {\n      if (!opts.dryRun) {\n        fs.writeFileSync(targetClaudeMd, merged)\n      }\n      report.written.push('CLAUDE.md')\n    } else {\n      report.skipped.push('CLAUDE.md')\n    }\n  }\n\n  return report\n}\n\nfunction* walkSync(dir: string): Generator<string> {\n  const entries = fs.readdirSync(dir, { withFileTypes: true })\n  for (const entry of entries) {\n    const fullPath = path.join(dir, entry.name)\n    if (entry.isDirectory()) {\n      yield* walkSync(fullPath)\n    } else {\n      yield fullPath\n    }\n  }\n}\n","const BEGIN = '<!-- lincoln:begin -->'\nconst END = '<!-- lincoln:end -->'\n\nexport function mergeManagedBlock(\n  existing: string | undefined,\n  block: string\n): string {\n  const wrapped = `${BEGIN}\\n${block}\\n${END}`\n  const text = existing ?? ''\n\n  const beginIndex = text.indexOf(BEGIN)\n  const endIndex = text.indexOf(END)\n\n  if (beginIndex !== -1 && endIndex !== -1 && endIndex > beginIndex) {\n    return (\n      text.slice(0, beginIndex) +\n      wrapped +\n      text.slice(endIndex + END.length)\n    )\n  }\n\n  if (text.trim().length === 0) {\n    return wrapped\n  }\n\n  return `${text.trimEnd()}\\n\\n${wrapped}\\n`\n}\n\nexport function extractManagedBlock(existing: string): string | undefined {\n  const beginIndex = existing.indexOf(BEGIN)\n  const endIndex = existing.indexOf(END)\n  if (beginIndex === -1 || endIndex === -1 || endIndex <= beginIndex) {\n    return undefined\n  }\n  return existing\n    .slice(beginIndex + BEGIN.length, endIndex)\n    .replace(/^\\n+|\\n+$/g, '')\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport os from 'node:os'\n\nexport type HarnessId = 'claude-code' | 'codex' | 'opencode'\n\nexport interface GlobalHarnessInfo {\n  id: HarnessId\n  installed: boolean\n  configDir: string\n  pluginManaged: boolean\n}\n\ninterface HarnessSpec {\n  id: HarnessId\n  configDirName: string\n  pluginMarker?: string\n}\n\nconst HARNESS_SPECS: HarnessSpec[] = [\n  {\n    id: 'claude-code',\n    configDirName: '.claude',\n    pluginMarker: 'plugins/lincoln'\n  },\n  { id: 'codex', configDirName: '.codex' },\n  { id: 'opencode', configDirName: '.opencode' }\n]\n\nexport function detectGlobalHarnesses(\n  overrideHomeDir?: string\n): GlobalHarnessInfo[] {\n  const homeDir = overrideHomeDir ?? os.homedir()\n\n  return HARNESS_SPECS.map((spec) => {\n    const configDir = path.join(homeDir, spec.configDirName)\n    const installed = fs.existsSync(configDir)\n    const pluginManaged = spec.pluginMarker\n      ? fs.existsSync(path.join(configDir, spec.pluginMarker))\n      : false\n\n    return {\n      id: spec.id,\n      installed,\n      configDir,\n      pluginManaged\n    }\n  })\n}\n\nexport function installedHarnessIds(homeDir?: string): HarnessId[] {\n  return detectGlobalHarnesses(homeDir)\n    .filter((h) => h.installed)\n    .map((h) => h.id)\n}\n","import { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { readVersionMarker } from '../lib/versionMarker.js'\nimport { createRegistryClient } from '../lib/npmRegistry.js'\nimport { compareVersions } from '../lib/semver.js'\nimport { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { install } from './install.js'\nimport type { InstallOptions } from './install.js'\n\nconst PACKAGE_NAME = '@sushanglewis/lincoln'\n\nexport interface UpdateOptions {\n  check: boolean\n  dryRun: boolean\n  yes: boolean\n}\n\nexport interface UpdateDeps {\n  paths: LincolnPaths\n  latestVersion: () => Promise<string>\n  currentVersion: () => string | undefined\n  npmInstallGlobal: (version: string) => Promise<number>\n  runInstall: (options: InstallOptions) => Promise<number>\n}\n\nexport function createDefaultDeps(): UpdateDeps {\n  const paths = resolveLincolnPaths()\n  const registry = createRegistryClient()\n  return {\n    paths,\n    latestVersion: () => registry.latestVersion(PACKAGE_NAME),\n    currentVersion: () => readVersionMarker(paths)?.version ?? readLocalPackageVersion(),\n    npmInstallGlobal: (version) => runNpmInstallGlobal(PACKAGE_NAME, version),\n    runInstall: (options) => install(options)\n  }\n}\n\nexport async function update(\n  options: UpdateOptions,\n  deps: Partial<UpdateDeps> = {}\n): Promise<number> {\n  const resolved: UpdateDeps = { ...createDefaultDeps(), ...deps }\n\n  let latest: string\n  try {\n    latest = await resolved.latestVersion()\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to query npm registry: ${message}`)\n    return 1\n  }\n\n  const current = resolved.currentVersion()\n\n  if (current !== undefined) {\n    const comparison = compareVersions(current, latest)\n    if (comparison !== undefined ? comparison > 0 : false) {\n      console.log(\n        `Lincoln ${current} is ahead of the latest release (${latest}); nothing to do.`\n      )\n      return 0\n    }\n    if (comparison !== undefined ? comparison === 0 : current === latest) {\n      console.log(`Lincoln ${current} is already up to date.`)\n      return 0\n    }\n  }\n\n  const summary = `${current ?? 'unknown'} -> ${latest}`\n\n  if (options.check) {\n    console.log(`Lincoln update available: ${summary}`)\n    return 0\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would update Lincoln ${summary}`)\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error(`Will update Lincoln ${summary}. Run with --yes to proceed.`)\n    return 1\n  }\n\n  const installCode = await resolved.npmInstallGlobal(latest)\n  if (installCode !== 0) {\n    console.error(`npm install -g ${PACKAGE_NAME}@${latest} failed with exit code ${installCode}`)\n    return 1\n  }\n\n  // NOTE: this runs the *current* process's install(), not the just-installed\n  // new version's. Re-executing the freshly installed `lincoln` binary would\n  // rely on PATH/npx resolution picking up the new shim, which is fragile\n  // mid-upgrade. The tradeoff is that sync logic changes shipped in the new\n  // version only take effect on the next command run.\n  const syncCode = await resolved.runInstall(defaultInstallOptions())\n  if (syncCode !== 0) {\n    console.error(`lincoln install failed with exit code ${syncCode}`)\n    return 1\n  }\n\n  console.log(`Updated Lincoln to ${latest}`)\n  return 0\n}\n\nfunction defaultInstallOptions(): InstallOptions {\n  return { yes: true, dryRun: false, force: false, harnesses: [], noVenv: true }\n}\n\nfunction runNpmInstallGlobal(packageName: string, version: string): Promise<number> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['install', '-g', `${packageName}@${version}`], {\n      stdio: 'inherit',\n      shell: process.platform === 'win32'\n    })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', () => resolvePromise(1))\n  })\n}\n","const DEFAULT_REGISTRY_URL = 'https://registry.npmjs.org'\nconst FETCH_TIMEOUT_MS = 15_000\n\nexport interface NpmDistTags {\n  latest?: string\n  [tag: string]: string | undefined\n}\n\nexport interface NpmVersionMetadata {\n  version?: string\n  dist?: {\n    tarball?: string\n  }\n}\n\nexport interface NpmPackument {\n  name?: string\n  'dist-tags'?: NpmDistTags\n  versions?: Record<string, NpmVersionMetadata>\n}\n\nexport interface RegistryClient {\n  latestVersion(packageName: string): Promise<string>\n  versions(packageName: string): Promise<string[]>\n  resolveVersion(packageName: string, spec: string): Promise<string>\n}\n\nexport function createRegistryClient(\n  registryUrl: string = DEFAULT_REGISTRY_URL,\n  fetchImpl: typeof fetch = fetch\n): RegistryClient {\n  const baseUrl = registryUrl.replace(/\\/+$/, '')\n\n  async function fetchPackument(packageName: string): Promise<NpmPackument> {\n    const url = `${baseUrl}/${encodePackageName(packageName)}`\n    const response = await fetchImpl(url, {\n      headers: { Accept: 'application/json' },\n      signal: AbortSignal.timeout(FETCH_TIMEOUT_MS)\n    })\n    if (!response.ok) {\n      throw new Error(\n        `npm registry returned ${response.status} ${response.statusText} for ${packageName}`\n      )\n    }\n    return (await response.json()) as NpmPackument\n  }\n\n  return {\n    async latestVersion(packageName: string): Promise<string> {\n      const packument = await fetchPackument(packageName)\n      const latest = packument['dist-tags']?.latest\n      if (!latest) {\n        throw new Error(`npm registry has no latest dist-tag for ${packageName}`)\n      }\n      return latest\n    },\n\n    async versions(packageName: string): Promise<string[]> {\n      const packument = await fetchPackument(packageName)\n      return Object.keys(packument.versions ?? {})\n    },\n\n    async resolveVersion(packageName: string, spec: string): Promise<string> {\n      const packument = await fetchPackument(packageName)\n      const tagTarget = packument['dist-tags']?.[spec]\n      if (tagTarget) {\n        return tagTarget\n      }\n      if (packument.versions && spec in packument.versions) {\n        return spec\n      }\n      throw new Error(`Version not found for ${packageName}: ${spec}`)\n    }\n  }\n}\n\nfunction encodePackageName(packageName: string): string {\n  if (packageName.startsWith('@')) {\n    const slash = packageName.indexOf('/')\n    if (slash === -1) {\n      return encodeURIComponent(packageName)\n    }\n    const scope = packageName.slice(1, slash)\n    const name = packageName.slice(slash + 1)\n    return `@${encodeURIComponent(scope)}%2F${encodeURIComponent(name)}`\n  }\n  return encodeURIComponent(packageName)\n}\n","const SEMVER_CORE = /^v?(\\d+)\\.(\\d+)\\.(\\d+)(?:-([0-9A-Za-z.-]+))?(?:\\+[0-9A-Za-z.-]+)?$/\nconst NUMERIC_IDENTIFIER = /^\\d+$/\n\ninterface ParsedVersion {\n  major: number\n  minor: number\n  patch: number\n  prerelease: string[]\n}\n\n/**\n * Compares two semver strings per semver.org precedence rules (build metadata\n * ignored). Returns a negative number when a < b, 0 when equal, a positive\n * number when a > b, or undefined when either input is not a parseable semver.\n */\nexport function compareVersions(a: string, b: string): number | undefined {\n  const pa = parseVersion(a)\n  const pb = parseVersion(b)\n  if (!pa || !pb) {\n    return undefined\n  }\n  if (pa.major !== pb.major) return pa.major - pb.major\n  if (pa.minor !== pb.minor) return pa.minor - pb.minor\n  if (pa.patch !== pb.patch) return pa.patch - pb.patch\n  return comparePrerelease(pa.prerelease, pb.prerelease)\n}\n\nfunction parseVersion(version: string): ParsedVersion | undefined {\n  const match = SEMVER_CORE.exec(version.trim())\n  if (!match) {\n    return undefined\n  }\n  return {\n    major: Number(match[1]),\n    minor: Number(match[2]),\n    patch: Number(match[3]),\n    prerelease: match[4] ? match[4].split('.') : []\n  }\n}\n\nfunction comparePrerelease(a: string[], b: string[]): number {\n  if (a.length === 0 && b.length === 0) return 0\n  // A version without a prerelease has higher precedence than one with it.\n  if (a.length === 0) return 1\n  if (b.length === 0) return -1\n  const shared = Math.min(a.length, b.length)\n  for (let i = 0; i < shared; i++) {\n    const x = a[i]\n    const y = b[i]\n    if (x === y) continue\n    const xNumeric = NUMERIC_IDENTIFIER.test(x)\n    const yNumeric = NUMERIC_IDENTIFIER.test(y)\n    if (xNumeric && yNumeric) return Number(x) - Number(y)\n    // Numeric identifiers have lower precedence than alphanumeric ones.\n    if (xNumeric) return -1\n    if (yNumeric) return 1\n    return x < y ? -1 : 1\n  }\n  return a.length - b.length\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { createRegistryClient } from '../lib/npmRegistry.js'\nimport { install } from './install.js'\nimport type { InstallOptions } from './install.js'\n\nconst PACKAGE_NAME = '@sushanglewis/lincoln'\nconst SEMVER_REGEX = /^v?\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/\nconst STRICT_SEMVER_REGEX = /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/\nconst DIST_TAG_REGEX = /^[a-zA-Z][a-zA-Z0-9._-]*$/\n\nexport interface UseOptions {\n  dryRun: boolean\n  yes: boolean\n}\n\nexport interface UseDeps {\n  paths: LincolnPaths\n  resolveVersion: (spec: string) => Promise<string>\n  ensureVersionAvailable: (version: string) => Promise<void>\n  npmGlobalRoot: () => Promise<string | undefined>\n  runInstall: (options: InstallOptions) => Promise<number>\n}\n\nexport function createDefaultDeps(): UseDeps {\n  const paths = resolveLincolnPaths()\n  const registry = createRegistryClient()\n  return {\n    paths,\n    resolveVersion: async (spec) => {\n      // Exact (optionally v-prefixed) versions resolve locally without a\n      // registry round-trip, so switching between installed versions works\n      // offline. Dist-tags (latest, next, ...) need the registry.\n      const normalized = spec.startsWith('v') ? spec.slice(1) : spec\n      if (STRICT_SEMVER_REGEX.test(normalized)) {\n        return normalized\n      }\n      return registry.resolveVersion(PACKAGE_NAME, spec)\n    },\n    ensureVersionAvailable: async (version) => {\n      const code = await runNpmInstallGlobal(PACKAGE_NAME, version)\n      if (code !== 0) {\n        throw new Error(`npm install -g ${PACKAGE_NAME}@${version} exited with ${code}`)\n      }\n    },\n    npmGlobalRoot: () => runNpmRootGlobal(),\n    runInstall: (options) => install(options)\n  }\n}\n\nexport async function use(\n  spec: string,\n  options: UseOptions,\n  deps: Partial<UseDeps> = {}\n): Promise<number> {\n  if (!isValidVersion(spec)) {\n    console.error(`Invalid version: ${spec}`)\n    return 1\n  }\n\n  const resolved: UseDeps = { ...createDefaultDeps(), ...deps }\n\n  let version: string\n  try {\n    version = await resolved.resolveVersion(spec)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to resolve version ${spec}: ${message}`)\n    return 1\n  }\n\n  const versionDir = path.join(resolved.paths.versionsDir, version)\n  const alreadyInstalled = fs.existsSync(versionDir)\n\n  if (options.dryRun) {\n    if (alreadyInstalled) {\n      console.log(`Dry run: would switch ${resolved.paths.currentDir} to ${versionDir}`)\n    } else {\n      console.log(\n        `Dry run: would install ${PACKAGE_NAME}@${version} globally, then switch ${resolved.paths.currentDir} to ${versionDir}`\n      )\n    }\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error(`Will switch Lincoln to ${version}. Run with --yes to proceed.`)\n    return 1\n  }\n\n  if (!alreadyInstalled) {\n    try {\n      await resolved.ensureVersionAvailable(version)\n    } catch (err) {\n      const message = err instanceof Error ? err.message : String(err)\n      console.error(`Failed to install ${PACKAGE_NAME}@${version}: ${message}`)\n      return 1\n    }\n\n    if (!fs.existsSync(versionDir)) {\n      // `npm install -g` places the package in the npm global root; it does\n      // not populate ~/.lincoln/versions. Copy the payload over so the\n      // version switch below has a real directory to point at.\n      try {\n        await copyVersionFromNpmGlobal(resolved, versionDir)\n      } catch (err) {\n        const message = err instanceof Error ? err.message : String(err)\n        console.error(`Failed to populate ${versionDir}: ${message}`)\n        return 1\n      }\n    }\n\n    if (!fs.existsSync(versionDir)) {\n      console.error(\n        `Provisioning ${PACKAGE_NAME}@${version} did not produce ${versionDir}; cannot switch versions.`\n      )\n      return 1\n    }\n  }\n\n  try {\n    switchCurrentLink(resolved.paths, versionDir)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to switch ${resolved.paths.currentDir}: ${message}`)\n    return 1\n  }\n\n  const syncCode = await resolved.runInstall(defaultInstallOptions())\n  if (syncCode !== 0) {\n    console.error(`lincoln install failed with exit code ${syncCode}`)\n    return 1\n  }\n\n  // The trailing install re-points ~/.lincoln/current at the *running* CLI's\n  // own version dir (Task 9 behavior, pending the install payload fix).\n  // Re-assert the requested version so the switch actually sticks.\n  try {\n    switchCurrentLink(resolved.paths, versionDir)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to switch ${resolved.paths.currentDir}: ${message}`)\n    return 1\n  }\n\n  console.log(`Switched Lincoln to ${version}`)\n  return 0\n}\n\nfunction isValidVersion(version: string): boolean {\n  return SEMVER_REGEX.test(version) || DIST_TAG_REGEX.test(version)\n}\n\nasync function copyVersionFromNpmGlobal(deps: UseDeps, versionDir: string): Promise<void> {\n  const globalRoot = await deps.npmGlobalRoot()\n  if (!globalRoot) {\n    return\n  }\n  const packageRoot = path.join(globalRoot, ...PACKAGE_NAME.split('/'))\n  if (!fs.existsSync(packageRoot)) {\n    return\n  }\n  fs.mkdirSync(path.dirname(versionDir), { recursive: true })\n  fs.cpSync(packageRoot, versionDir, { recursive: true })\n}\n\nfunction switchCurrentLink(paths: LincolnPaths, versionDir: string): void {\n  fs.mkdirSync(paths.lincolnHome, { recursive: true })\n  try {\n    fs.rmSync(paths.currentDir, { recursive: true, force: true })\n    fs.symlinkSync(versionDir, paths.currentDir)\n  } catch {\n    fs.rmSync(paths.currentDir, { recursive: true, force: true })\n    fs.cpSync(versionDir, paths.currentDir, { recursive: true, force: true })\n  }\n}\n\nfunction defaultInstallOptions(): InstallOptions {\n  return { yes: true, dryRun: false, force: false, harnesses: [], noVenv: true }\n}\n\nfunction runNpmInstallGlobal(packageName: string, version: string): Promise<number> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['install', '-g', `${packageName}@${version}`], {\n      stdio: 'inherit',\n      shell: process.platform === 'win32'\n    })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', () => resolvePromise(1))\n  })\n}\n\nfunction runNpmRootGlobal(): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['root', '-g'], {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const root = stdout.trim()\n      resolvePromise(code === 0 && root.length > 0 ? root : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { listVendoredFrameworkFiles } from '../lib/projectFiles.js'\nimport { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { writeProjectMarker } from '../lib/marker.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport type { LincolnPaths } from '../lib/paths.js'\n\nexport interface MigrateProjectOptions {\n  dryRun?: boolean\n  yes?: boolean\n  force?: boolean\n}\n\nexport interface MigrateProjectDeps {\n  paths: LincolnPaths\n  listVendoredFrameworkFiles: (\n    payloadRoot: string,\n    projectRoot: string\n  ) => ReturnType<typeof listVendoredFrameworkFiles>\n  writeProjectMarker: typeof writeProjectMarker\n}\n\nexport function createDefaultDeps(): MigrateProjectDeps {\n  return {\n    paths: resolveLincolnPaths(),\n    listVendoredFrameworkFiles,\n    writeProjectMarker\n  }\n}\n\nexport async function migrateProject(\n  projectRoot: string,\n  options: MigrateProjectOptions = {},\n  deps: MigrateProjectDeps = createDefaultDeps()\n): Promise<number> {\n  const payloadRoot = deps.paths.currentDir\n  if (!fs.existsSync(payloadRoot)) {\n    console.error(`Lincoln payload not found at ${payloadRoot}. Run \"lincoln install\" first.`)\n    return 1\n  }\n\n  const absoluteProjectRoot = path.resolve(projectRoot)\n  const report = deps.listVendoredFrameworkFiles(payloadRoot, absoluteProjectRoot)\n\n  if (options.dryRun) {\n    console.log(`Dry run: would migrate ${absoluteProjectRoot}`)\n    if (report.removable.length > 0) {\n      console.log('Would remove unmodified framework files:')\n      for (const f of report.removable) console.log(`  - ${f}`)\n    }\n    if (report.modified.length > 0) {\n      console.log('Would preserve modified framework files:')\n      for (const f of report.modified) console.log(`  - ${f}`)\n    }\n    if (report.preserved.length > 0) {\n      console.log('Would preserve project-local files:')\n      for (const f of report.preserved) console.log(`  - ${f}`)\n    }\n    console.log('Would create .lincoln.yaml')\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error('This will remove vendored framework files. Run with --yes to proceed.')\n    return 1\n  }\n\n  for (const file of report.removable) {\n    const filePath = path.join(absoluteProjectRoot, file)\n    try {\n      fs.rmSync(filePath)\n      // Remove empty parent directories up to project root\n      let dir = path.dirname(filePath)\n      while (dir !== absoluteProjectRoot && fs.existsSync(dir)) {\n        const entries = fs.readdirSync(dir)\n        if (entries.length === 0) {\n          fs.rmdirSync(dir)\n          dir = path.dirname(dir)\n        } else {\n          break\n        }\n      }\n    } catch (err) {\n      const message = err instanceof Error ? err.message : String(err)\n      console.error(`Failed to remove ${file}: ${message}`)\n      return 1\n    }\n  }\n\n  if (report.modified.length > 0) {\n    console.log('Preserved modified framework files:')\n    for (const f of report.modified) console.log(`  - ${f}`)\n  }\n\n  if (report.preserved.length > 0) {\n    console.log('Preserved project-local files:')\n    for (const f of report.preserved) console.log(`  - ${f}`)\n  }\n\n  try {\n    deps.writeProjectMarker(\n      absoluteProjectRoot,\n      {\n        enabled: true,\n        workflow_template: 'interview-to-knowledge',\n        min_lincoln_version: readLocalPackageVersion() ?? '1.5.0'\n      },\n      { force: options.force }\n    )\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to write .lincoln.yaml: ${message}`)\n    return 1\n  }\n\n  console.log(`Migrated project at ${absoluteProjectRoot}`)\n  console.log(`Removed ${report.removable.length} unmodified framework files`)\n  return 0\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport crypto from 'node:crypto'\n\n// Mirrors scripts/package-lincoln-plugin.py and scripts/sync-framework-package.mjs\nexport const FRAMEWORK_ALLOWLIST_DIRS = ['.claude', '.claude-plugin', 'scripts', 'tools']\nexport const FRAMEWORK_ALLOWLIST_FILES = [\n  'README.md',\n  'README.en.md',\n  'USAGE.md',\n  'CONTRIBUTING.md',\n  'CLAUDE.md',\n  'LICENSE',\n  'RELEASE.md',\n  '.version-bump.json',\n  'requirements.txt',\n  'SKILL.md'\n]\nexport const FRAMEWORK_DENYLIST_NAMES = new Set([\n  '.git',\n  '.context',\n  '.venv',\n  'venv',\n  'dist',\n  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string\n): VendoredFileReport {\n  const report: VendoredFileReport = { removable: [], modified: [], preserved: [] }\n\n  function walk(dir: string): void {\n    const entries = fs.readdirSync(dir, { withFileTypes: true })\n    for (const entry of entries) {\n      const fullPath = path.join(dir, entry.name)\n      const relativePath = path.relative(projectRoot, fullPath)\n\n      if (entry.isDirectory()) {\n        if (isPreservedDir(relativePath)) {\n          walk(fullPath)\n        } else if (!isDenied(relativePath)) {\n          walk(fullPath)\n        }\n        continue\n      }\n\n      if (isPreserved(relativePath)) {\n        report.preserved.push(relativePath)\n        continue\n      }\n\n      if (isDenied(relativePath)) continue\n      if (!isAllowlisted(relativePath)) continue\n\n      const payloadFile = path.join(payloadRoot, relativePath)\n      if (!fs.existsSync(payloadFile)) {\n        report.modified.push(relativePath)\n        continue\n      }\n\n      if (sha256(fullPath) === sha256(payloadFile)) {\n        report.removable.push(relativePath)\n      } else {\n        report.modified.push(relativePath)\n      }\n    }\n  }\n\n  if (fs.existsSync(projectRoot)) {\n    walk(projectRoot)\n  }\n\n  return report\n}\n","import { spawn, type ChildProcess } from 'node:child_process'\nimport { EventEmitter } from 'node:events'\n\nexport interface RecordDeps {\n  spawn: (\n    command: string,\n    args: readonly string[],\n    options: { stdio: 'inherit' }\n  ) => ChildProcess\n}\n\nexport function createDefaultDeps(): RecordDeps {\n  return { spawn }\n}\n\nexport function record(args: string[], deps: RecordDeps = createDefaultDeps()): Promise<number> {\n  return new Promise((resolve) => {\n    const child = deps.spawn('lincoln-record', args, { stdio: 'inherit' })\n    child.on('error', (err: Error) => {\n      console.error(`Failed to start lincoln-record: ${err.message}`)\n      resolve(1)\n    })\n    child.on('close', (code: number | null) 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+{"version":3,"sources":["../src/main.ts","../src/cli.ts","../src/commands/doctor.ts","../src/lib/paths.ts","../src/lib/versionMarker.ts","../src/lib/packageInfo.ts","../src/lib/marker.ts","../src/commands/initProject.ts","../src/commands/install.ts","../src/lib/syncClaude.ts","../src/lib/claudeMdMerge.ts","../src/lib/harnessDetect.ts","../src/commands/update.ts","../src/lib/npmRegistry.ts","../src/lib/semver.ts","../src/commands/use.ts","../src/commands/migrateProject.ts","../src/lib/projectFiles.ts","../src/commands/record.ts"],"sourcesContent":["import fs from 'node:fs'\nimport path from 'node:path'\nimport { fileURLToPath } from 'node:url'\nimport { parseArgs } from './cli.js'\nimport { doctor } from './commands/doctor.js'\nimport { initProject } from './commands/initProject.js'\nimport { install } from './commands/install.js'\nimport { update } from './commands/update.js'\nimport { use } from './commands/use.js'\nimport { migrateProject } from './commands/migrateProject.js'\nimport { record } from './commands/record.js'\nimport { readLocalPackageVersion } from './lib/packageInfo.js'\n\nconst USAGE = `Lincoln — Global agent harness plugin CLI\n\nUsage:\n  lincoln <command> [options]\n\nCommands:\n  install          One-time global setup: sync to ~/.claude/, ~/.codex/, ~/.opencode/\n  update           Pull latest release and re-sync globally\n  use <version>   Switch active global version\n  doctor           Diagnose harness integration\n  init-project     Create .lincoln.yaml in current project\n  migrate-project  Remove vendored framework files from an existing project\n  record           Launch the Lincoln interview recorder TUI\n  help             Show this help message\n\nOptions:\n  --yes, -y        Skip confirmation prompts\n  --dry-run        Show what would be done without making changes\n  --force          Force re-install even if up to date\n  --check          Check for available updates without installing (update)\n  --json           Output machine-readable JSON (where supported)\n  --help, -h       Show this help message\n  --version, -v    Show the installed Lincoln version\n`\n\nexport async function main(argv: string[]): Promise<number> {\n  const parsed = parseArgs(argv)\n\n  if (parsed.flags.version || parsed.flags.v) {\n    const version = readLocalPackageVersion()\n    console.log(version ? `Lincoln ${version}` : 'Lincoln (unknown version)')\n    return 0\n  }\n\n  if (parsed.command === 'help') {\n    console.log(USAGE)\n    return 0\n  }\n\n  if (parsed.command === 'install') {\n    return install({\n      yes: Boolean(parsed.flags.yes || parsed.flags.y),\n      dryRun: Boolean(parsed.flags['dry-run']),\n      force: Boolean(parsed.flags.force),\n      harnesses: parsed.args,\n      noVenv: Boolean(parsed.flags['no-venv'])\n    })\n  }\n\n  if (parsed.command === 'update') {\n    return update({\n      check: Boolean(parsed.flags.check),\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y)\n    })\n  }\n\n  if (parsed.command === 'use') {\n    const version = parsed.args[0]\n    if (!version) {\n      console.error('Usage: lincoln use <version> [--yes] [--dry-run]')\n      return 1\n    }\n    return use(version, {\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y)\n    })\n  }\n\n  if (parsed.command === 'doctor') {\n    const result = await doctor({ json: Boolean(parsed.flags.json) })\n    return result.code\n  }\n\n  if (parsed.command === 'init-project') {\n    return initProject(process.cwd(), {\n      force: Boolean(parsed.flags.force),\n      dryRun: Boolean(parsed.flags['dry-run'])\n    })\n  }\n\n  if (parsed.command === 'migrate-project') {\n    return migrateProject(process.cwd(), {\n      dryRun: Boolean(parsed.flags['dry-run']),\n      yes: Boolean(parsed.flags.yes || parsed.flags.y),\n      force: Boolean(parsed.flags.force)\n    })\n  }\n\n  if (parsed.command === 'record') {\n    return record(parsed.args)\n  }\n\n  console.log(USAGE)\n  return 0\n}\n\nif (\n  process.argv[1] &&\n  path.resolve(fs.realpathSync(fileURLToPath(import.meta.url))) ===\n    path.resolve(fs.realpathSync(process.argv[1]))\n) {\n  main(process.argv).then((code) => process.exit(code))\n}\n","export interface ParsedArgs {\n  command: string\n  args: string[]\n  flags: Record<string, unknown>\n}\n\n/**\n * Flags that never take a value. Boolean flags must not consume the next\n * token, otherwise `lincoln use --yes 1.6.0` would swallow the positional\n * version argument into `flags.yes`.\n */\nconst BOOLEAN_FLAGS = new Set([\n  'yes',\n  'y',\n  'dry-run',\n  'force',\n  'check',\n  'json',\n  'help',\n  'h',\n  'no-venv',\n  'version',\n  'v'\n])\n\nexport function parseArgs(argv: string[]): ParsedArgs {\n  const args = argv.slice(2)\n  const flags: Record<string, unknown> = {}\n  const positional: string[] = []\n\n  for (let i = 0; i < args.length; i++) {\n    const arg = args[i]\n    if (arg.startsWith('--')) {\n      const key = arg.replace(/^--/, '')\n      const next = args[i + 1]\n      if (!BOOLEAN_FLAGS.has(key) && next && !next.startsWith('-')) {\n        flags[key] = next\n        i++\n      } else {\n        flags[key] = true\n      }\n    } else if (arg.startsWith('-')) {\n      const key = arg.replace(/^-/, '')\n      const next = args[i + 1]\n      if (!BOOLEAN_FLAGS.has(key) && next && !next.startsWith('-')) {\n        flags[key] = next\n        i++\n      } else {\n        flags[key] = true\n      }\n    } else {\n      positional.push(arg)\n    }\n  }\n\n  const command = positional[0] || 'help'\n  const validCommands = new Set([\n    'install',\n    'update',\n    'use',\n    'doctor',\n    'init-project',\n    'migrate-project',\n    'record',\n    'help',\n    '--help',\n    '-h'\n  ])\n\n  if (command === 'help' || command === '--help' || command === '-h') {\n    return { command: 'help', args: positional.slice(1), flags }\n  }\n\n  if (!validCommands.has(command)) {\n    return { command: 'help', args: positional, flags }\n  }\n\n  return { command, args: positional.slice(1), flags }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { readVersionMarker } from '../lib/versionMarker.js'\n\nexport interface DoctorCheck {\n  name: string\n  status: 'ok' | 'warn' | 'skip' | 'error'\n  message: string\n}\n\nexport interface DoctorOptions {\n  json?: boolean\n}\n\nexport interface DoctorDeps {\n  paths: LincolnPaths\n  nodeVersion: () => string\n  pythonVersion: () => Promise<string | undefined>\n  pyyamlVersion: () => Promise<string | undefined>\n  npmVersion: () => Promise<string | undefined>\n  projectRoot: string\n}\n\nexport interface DoctorResult {\n  code: number\n  checks: DoctorCheck[]\n}\n\nconst MIN_NODE_MAJOR = 20\nconst MIN_PYTHON_MAJOR = 3\nconst MIN_PYTHON_MINOR = 10\n\nexport function createDefaultDeps(): DoctorDeps {\n  const paths = resolveLincolnPaths()\n  const pythonCommand = resolvePythonCommand(paths)\n  return {\n    paths,\n    nodeVersion: () => process.version,\n    pythonVersion: () => queryCommandVersion(pythonCommand, ['--version']),\n    pyyamlVersion: () => queryPyyamlVersion(pythonCommand),\n    npmVersion: () => queryCommandVersion('npm', ['--version']),\n    projectRoot: process.cwd()\n  }\n}\n\nexport async function doctor(\n  options: DoctorOptions = {},\n  deps: DoctorDeps = createDefaultDeps()\n): Promise<DoctorResult> {\n  const checks: DoctorCheck[] = []\n\n  checks.push(checkNode(deps.nodeVersion()))\n  checks.push(await checkPython(deps.pythonVersion))\n  checks.push(await checkPyyaml(deps.pyyamlVersion))\n  checks.push(await checkNpm(deps.npmVersion))\n  checks.push(checkGlobalMarker(deps.paths))\n  checks.push(checkPayloadHooks(deps.paths))\n  checks.push(checkVenv(deps.paths))\n  checks.push(checkProjectMarker(deps.projectRoot))\n\n  const hasError = checks.some((c) => c.status === 'error')\n  const result: DoctorResult = { code: hasError ? 1 : 0, checks }\n\n  if (options.json) {\n    console.log(JSON.stringify({ checks }, null, 2))\n  } else {\n    for (const check of checks) {\n      const icon = check.status === 'ok' ? '✓' : check.status === 'error' ? '✗' : check.status === 'warn' ? '!' : '-'\n      console.log(`${icon} ${check.name}: ${check.message}`)\n    }\n    if (hasError) {\n      console.error('\\nOne or more checks failed.')\n    }\n  }\n\n  return result\n}\n\nfunction checkNode(version: string): DoctorCheck {\n  const major = parseNodeMajor(version)\n  if (major === undefined) {\n    return { name: 'node', status: 'warn', message: `Could not parse Node version: ${version}` }\n  }\n  if (major < MIN_NODE_MAJOR) {\n    return { name: 'node', status: 'error', message: `Node ${version} is below the minimum required v${MIN_NODE_MAJOR}` }\n  }\n  return { name: 'node', status: 'ok', message: `Node ${version}` }\n}\n\nasync function checkPython(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = (await query())?.trim()\n  if (!version) {\n    return { name: 'python', status: 'error', message: 'Python 3 is not available' }\n  }\n  const parsed = parsePythonVersion(version)\n  if (!parsed) {\n    return { name: 'python', status: 'warn', message: `Could not parse Python version: ${version}` }\n  }\n  if (parsed.major < MIN_PYTHON_MAJOR || (parsed.major === MIN_PYTHON_MAJOR && parsed.minor < MIN_PYTHON_MINOR)) {\n    return {\n      name: 'python',\n      status: 'error',\n      message: `Python ${version} is below the minimum required ${MIN_PYTHON_MAJOR}.${MIN_PYTHON_MINOR}`\n    }\n  }\n  const display = version.replace(/^Python\\s+/, '')\n  return { name: 'python', status: 'ok', message: `Python ${display}` }\n}\n\nasync function checkPyyaml(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = await query()\n  if (!version) {\n    return { name: 'pyyaml', status: 'error', message: 'PyYAML is not installed for Python 3' }\n  }\n  return { name: 'pyyaml', status: 'ok', message: `PyYAML ${version}` }\n}\n\nasync function checkNpm(query: () => Promise<string | undefined>): Promise<DoctorCheck> {\n  const version = await query()\n  if (!version) {\n    return { name: 'npm', status: 'warn', message: 'npm is not available' }\n  }\n  return { name: 'npm', status: 'ok', message: `npm ${version}` }\n}\n\nfunction checkGlobalMarker(paths: LincolnPaths): DoctorCheck {\n  const marker = readVersionMarker(paths)\n  if (!marker) {\n    return { name: 'global-marker', status: 'warn', message: `No version marker at ${paths.versionMarker}` }\n  }\n  return { name: 'global-marker', status: 'ok', message: `Lincoln ${marker.version} installed` }\n}\n\nfunction checkPayloadHooks(paths: LincolnPaths): DoctorCheck {\n  const hooksDir = path.join(paths.currentDir, '.claude', 'hooks')\n  if (!fs.existsSync(hooksDir)) {\n    return { name: 'payload-hooks', status: 'warn', message: `Payload hooks not found at ${hooksDir}` }\n  }\n  const required = ['on-session-start.sh']\n  const missing = required.filter((f) => !fs.existsSync(path.join(hooksDir, f)))\n  if (missing.length > 0) {\n    return { name: 'payload-hooks', status: 'warn', message: `Missing hooks: ${missing.join(', ')}` }\n  }\n  return { name: 'payload-hooks', status: 'ok', message: `Payload hooks present at ${hooksDir}` }\n}\n\nfunction checkVenv(paths: LincolnPaths): DoctorCheck {\n  if (!fs.existsSync(paths.venvDir)) {\n    return { name: 'venv', status: 'warn', message: `Virtual environment not found at ${paths.venvDir}` }\n  }\n  const pythonExe = path.join(paths.venvDir, process.platform === 'win32' ? 'Scripts' : 'bin', 'python')\n  if (!fs.existsSync(pythonExe)) {\n    return { name: 'venv', status: 'warn', message: `Virtual environment exists but python executable is missing` }\n  }\n  return { name: 'venv', status: 'ok', message: `Virtual environment present at ${paths.venvDir}` }\n}\n\nfunction checkProjectMarker(projectRoot: string): DoctorCheck {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (!fs.existsSync(markerPath)) {\n    return { name: 'project-marker', status: 'skip', message: `No .lincoln.yaml in ${projectRoot}` }\n  }\n  return { name: 'project-marker', status: 'ok', message: `Project marker found at ${markerPath}` }\n}\n\nfunction resolvePythonCommand(paths: LincolnPaths): string {\n  const venvPython = path.join(\n    paths.venvDir,\n    process.platform === 'win32' ? 'Scripts' : 'bin',\n    process.platform === 'win32' ? 'python.exe' : 'python'\n  )\n  if (fs.existsSync(venvPython)) {\n    return venvPython\n  }\n  return 'python3'\n}\n\nfunction parseNodeMajor(version: string): number | undefined {\n  const match = /^v?(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return Number(match[1])\n}\n\nfunction parsePythonVersion(version: string): { major: number; minor: number } | undefined {\n  const match = /(\\d+)\\.(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return { major: Number(match[1]), minor: Number(match[2]) }\n}\n\nasync function queryCommandVersion(command: string, args: string[]): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(command, args, {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n\nasync function queryPyyamlVersion(pythonCommand: string): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(\n      pythonCommand,\n      ['-c', 'import yaml; print(yaml.__version__)'],\n      { stdio: ['ignore', 'pipe', 'ignore'], shell: process.platform === 'win32' }\n    )\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n","import path from 'node:path'\nimport os from 'node:os'\n\nexport interface LincolnPaths {\n  homeDir: string\n  lincolnHome: string\n  versionsDir: string\n  currentDir: string\n  versionMarker: string\n  venvDir: string\n  claudeDir: string\n  codexDir: string\n  opencodeDir: string\n}\n\nexport function resolveLincolnPaths(overrideHomeDir?: string): LincolnPaths {\n  const homeDir = overrideHomeDir ?? os.homedir()\n  const lincolnHome = process.env.LINCOLN_HOME\n    ? path.resolve(process.env.LINCOLN_HOME)\n    : path.join(homeDir, '.lincoln')\n\n  return {\n    homeDir,\n    lincolnHome,\n    versionsDir: path.join(lincolnHome, 'versions'),\n    currentDir: path.join(lincolnHome, 'current'),\n    versionMarker: path.join(lincolnHome, 'marker.json'),\n    venvDir: path.join(lincolnHome, 'venv'),\n    claudeDir: path.join(homeDir, '.claude'),\n    codexDir: path.join(homeDir, '.codex'),\n    opencodeDir: path.join(homeDir, '.opencode')\n  }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport type { LincolnPaths } from './paths.js'\n\nexport interface VersionMarker {\n  version: string\n  installedAt: string\n  harnesses: string[]\n  managedFiles: string[]\n}\n\nexport function readVersionMarker(paths: LincolnPaths): VersionMarker | undefined {\n  try {\n    const raw = fs.readFileSync(paths.versionMarker, 'utf8')\n    const parsed = JSON.parse(raw) as VersionMarker\n    if (\n      typeof parsed.version === 'string' &&\n      typeof parsed.installedAt === 'string' &&\n      Array.isArray(parsed.harnesses)\n    ) {\n      return parsed\n    }\n    return undefined\n  } catch {\n    return undefined\n  }\n}\n\nexport function writeVersionMarker(\n  paths: LincolnPaths,\n  marker: VersionMarker\n): void {\n  fs.mkdirSync(path.dirname(paths.versionMarker), { recursive: true })\n  fs.writeFileSync(paths.versionMarker, JSON.stringify(marker, null, 2) + '\\n')\n}\n\nexport function isUpToDate(paths: LincolnPaths, version: string): boolean {\n  const marker = readVersionMarker(paths)\n  return marker?.version === version\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { fileURLToPath } from 'node:url'\n\n/**\n * Finds the directory containing the running lincoln package's package.json.\n * Returns undefined when no package.json can be located.\n */\nexport function readLocalPackageRoot(): string | undefined {\n  try {\n    let dir = path.dirname(fileURLToPath(import.meta.url))\n    const root = path.parse(dir).root\n    while (dir !== root) {\n      const pkgPath = path.join(dir, 'package.json')\n      if (fs.existsSync(pkgPath)) {\n        const parsed = JSON.parse(fs.readFileSync(pkgPath, 'utf8')) as { name?: string }\n        if (parsed.name === '@sushanglewis/lincoln') {\n          return dir\n        }\n      }\n      dir = path.dirname(dir)\n    }\n  } catch {\n    // ignore and return undefined\n  }\n  return undefined\n}\n\n/**\n * Reads the version of the running lincoln package from its own package.json.\n * Walks upward from the current module file until it finds the package.json.\n * Returns undefined when the package.json cannot be located or parsed.\n */\nexport function readLocalPackageVersion(): string | undefined {\n  try {\n    const root = readLocalPackageRoot()\n    if (!root) return undefined\n    const parsed = JSON.parse(fs.readFileSync(path.join(root, 'package.json'), 'utf8')) as {\n      version?: string\n    }\n    return typeof parsed.version === 'string' ? parsed.version : undefined\n  } catch {\n    return undefined\n  }\n}\n\n/**\n * Resolves the bundled framework payload directory inside the running package.\n */\nexport function resolvePayloadRoot(): string | undefined {\n  const root = readLocalPackageRoot()\n  if (!root) return undefined\n  const payload = path.join(root, 'framework')\n  return fs.existsSync(payload) ? payload : undefined\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport yaml from 'js-yaml'\n\nexport interface ProjectMarker {\n  enabled: boolean\n  workflow_template?: string\n  min_lincoln_version?: string\n}\n\nexport interface WriteMarkerOptions {\n  force?: boolean\n  dryRun?: boolean\n}\n\nexport function readProjectMarker(projectRoot: string): ProjectMarker | undefined {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (!fs.existsSync(markerPath)) {\n    return undefined\n  }\n  try {\n    const parsed = yaml.load(fs.readFileSync(markerPath, 'utf8')) as Record<string, unknown> | null | undefined\n    if (!parsed || typeof parsed !== 'object') {\n      return undefined\n    }\n    return {\n      enabled: Boolean(parsed.enabled),\n      workflow_template: typeof parsed.workflow_template === 'string' ? parsed.workflow_template : undefined,\n      min_lincoln_version: typeof parsed.min_lincoln_version === 'string' ? parsed.min_lincoln_version : undefined\n    }\n  } catch {\n    return undefined\n  }\n}\n\nexport function writeProjectMarker(\n  projectRoot: string,\n  marker: ProjectMarker,\n  opts: WriteMarkerOptions = {}\n): void {\n  const markerPath = path.join(projectRoot, '.lincoln.yaml')\n  if (fs.existsSync(markerPath) && !opts.force) {\n    throw new Error(`.lincoln.yaml already exists at ${markerPath}; use --force to overwrite`)\n  }\n  const content = yaml.dump(marker, { sortKeys: false, lineWidth: -1 })\n  if (!opts.dryRun) {\n    fs.mkdirSync(projectRoot, { recursive: true })\n    fs.writeFileSync(markerPath, content)\n  }\n}\n","import { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { writeProjectMarker, readProjectMarker } from '../lib/marker.js'\n\nexport interface InitProjectOptions {\n  force?: boolean\n  dryRun?: boolean\n}\n\nexport function initProject(projectRoot: string, options: InitProjectOptions = {}): number {\n  if (!options.force && readProjectMarker(projectRoot) !== undefined) {\n    console.error(`Project already has a .lincoln.yaml. Use --force to overwrite.`)\n    return 1\n  }\n\n  try {\n    writeProjectMarker(\n      projectRoot,\n      {\n        enabled: true,\n        workflow_template: 'interview-to-knowledge',\n        min_lincoln_version: readLocalPackageVersion() ?? '1.5.0'\n      },\n      { force: options.force, dryRun: options.dryRun }\n    )\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to write .lincoln.yaml: ${message}`)\n    return 1\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would create ${projectRoot}/.lincoln.yaml`)\n  } else {\n    console.log(`Created ${projectRoot}/.lincoln.yaml`)\n  }\n  return 0\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { writeVersionMarker } from '../lib/versionMarker.js'\nimport { readLocalPackageVersion, resolvePayloadRoot } from '../lib/packageInfo.js'\nimport type { SyncReport } from '../lib/syncClaude.js'\nimport { syncClaudeCode } from '../lib/syncClaude.js'\nimport { installedHarnessIds } from '../lib/harnessDetect.js'\n\nexport interface InstallOptions {\n  yes: boolean\n  dryRun: boolean\n  force: boolean\n  harnesses: string[]\n  noVenv: boolean\n}\n\nexport interface InstallDeps {\n  paths: LincolnPaths\n  payloadRoot: string\n  syncClaude: (opts: {\n    payloadRoot: string\n    targetDir: string\n    version: string\n    dryRun: boolean\n  }) => SyncReport\n}\n\nexport function createDefaultDeps(): InstallDeps {\n  return {\n    paths: resolveLincolnPaths(),\n    payloadRoot: resolvePayloadRoot() || '',\n    syncClaude: syncClaudeCode\n  }\n}\n\nexport async function install(\n  options: InstallOptions,\n  deps: InstallDeps = createDefaultDeps()\n): Promise<number> {\n  if (!options.dryRun && !options.yes) {\n    console.error('This will install Lincoln globally. Run with --yes to proceed.')\n    return 1\n  }\n\n  const version = readLocalPackageVersion()\n  if (!version) {\n    console.error('Could not determine Lincoln version')\n    return 1\n  }\n\n  const harnesses =\n    options.harnesses.length > 0 ? options.harnesses : installedHarnessIds(deps.paths.homeDir)\n\n  if (harnesses.length === 0) {\n    console.error('No agent harness detected. Install Claude Code, Codex, or OpenCode first.')\n    return 1\n  }\n\n  const payloadRoot = deps.payloadRoot\n  if (!payloadRoot || !fs.existsSync(payloadRoot)) {\n    console.error(\n      `Lincoln payload not found. Run \"npm install -g @sushanglewis/lincoln\" first.`\n    )\n    return 1\n  }\n\n  const versionDir = path.join(deps.paths.versionsDir, version)\n  if (!options.dryRun) {\n    fs.mkdirSync(versionDir, { recursive: true })\n    fs.cpSync(payloadRoot, versionDir, { recursive: true, force: true })\n    try {\n      fs.rmSync(deps.paths.currentDir, { recursive: true, force: true })\n      fs.symlinkSync(versionDir, deps.paths.currentDir)\n    } catch {\n      fs.rmSync(deps.paths.currentDir, { recursive: true, force: true })\n      fs.cpSync(versionDir, deps.paths.currentDir, { recursive: true, force: true })\n    }\n  }\n\n  const report = deps.syncClaude({\n    payloadRoot: deps.paths.currentDir,\n    targetDir: deps.paths.claudeDir,\n    version,\n    dryRun: options.dryRun\n  })\n\n  if (!options.dryRun && !options.noVenv) {\n    const python = await resolvePythonForVenv()\n    if (!python) {\n      console.error(\n        'Python 3.10+ is required but was not found. Set LINCOLN_PYTHON to a compatible Python executable.'\n      )\n      return 1\n    }\n    await setupVenv(deps.paths, payloadRoot, python)\n  }\n\n  if (!options.dryRun) {\n    writeVersionMarker(deps.paths, {\n      version,\n      installedAt: new Date().toISOString(),\n      harnesses,\n      managedFiles: report.written\n    })\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would install Lincoln ${version} for harnesses: ${harnesses.join(', ')}`)\n    console.log(`Would write ${report.written.length} files`)\n  } else {\n    console.log(`Installed Lincoln ${version} for harnesses: ${harnesses.join(', ')}`)\n    console.log(`Wrote ${report.written.length} files`)\n  }\n\n  return 0\n}\n\nfunction runCommand(command: string, args: string[]): Promise<number> {\n  return new Promise((resolvePromise, rejectPromise) => {\n    const child = spawn(command, args, { stdio: 'inherit' })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', (err) => rejectPromise(err))\n  })\n}\n\nconst MIN_PYTHON_MAJOR = 3\nconst MIN_PYTHON_MINOR = 10\nconst DEFAULT_PYTHON_CANDIDATES = ['python3.12', 'python3.11', 'python3.10', 'python3']\n\nfunction parsePythonVersion(version: string): { major: number; minor: number } | undefined {\n  const match = /(\\d+)\\.(\\d+)/.exec(version)\n  if (!match) {\n    return undefined\n  }\n  return { major: Number(match[1]), minor: Number(match[2]) }\n}\n\nasync function queryPythonVersion(command: string): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn(command, ['--version'], {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const text = stdout.trim()\n      resolvePromise(code === 0 && text.length > 0 ? text : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n\nexport async function resolvePythonForVenv(\n  envOverride: string | undefined = process.env.LINCOLN_PYTHON,\n  candidates: string[] = DEFAULT_PYTHON_CANDIDATES,\n  queryVersion: (cmd: string) => Promise<string | undefined> = queryPythonVersion\n): Promise<string | undefined> {\n  const list = envOverride ? [envOverride] : candidates\n  for (const cmd of list) {\n    const version = await queryVersion(cmd)\n    if (!version) {\n      continue\n    }\n    const parsed = parsePythonVersion(version)\n    if (\n      parsed &&\n      parsed.major >= MIN_PYTHON_MAJOR &&\n      (parsed.major > MIN_PYTHON_MAJOR || parsed.minor >= MIN_PYTHON_MINOR)\n    ) {\n      return cmd\n    }\n  }\n  return undefined\n}\n\nasync function setupVenv(paths: LincolnPaths, payloadRoot: string, pythonCommand: string): Promise<void> {\n  const pythonExe = path.join(\n    paths.venvDir,\n    process.platform === 'win32' ? 'Scripts' : 'bin',\n    process.platform === 'win32' ? 'python.exe' : 'python'\n  )\n\n  if (!fs.existsSync(pythonExe)) {\n    console.log('Creating Lincoln virtual environment...')\n    await runCommand(pythonCommand, ['-m', 'venv', paths.venvDir])\n  }\n\n  const requirementsPath = path.join(payloadRoot, 'requirements.txt')\n  if (fs.existsSync(requirementsPath)) {\n    console.log('Installing Python dependencies...')\n    const pipExe = path.join(\n      paths.venvDir,\n      process.platform === 'win32' ? 'Scripts' : 'bin',\n      process.platform === 'win32' ? 'pip.exe' : 'pip'\n    )\n    await runCommand(pipExe, ['install', '-r', requirementsPath])\n  }\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport crypto from 'node:crypto'\nimport { mergeManagedBlock } from './claudeMdMerge.js'\n\nexport interface SyncOptions {\n  payloadRoot: string\n  targetDir: string\n  version: string\n  dryRun: boolean\n}\n\nexport interface SyncReport {\n  written: string[]\n  skipped: string[]\n  preserved: string[]\n  warnings: string[]\n  settingsTouched?: string[]\n}\n\nconst COPY_SUBDIRS = [\n  'agents',\n  'skills',\n  'workflows',\n  'stages',\n  'schemas',\n  'templates',\n  'harnesses'\n]\n\nfunction sha256(filePath: string): string {\n  const data = fs.readFileSync(filePath)\n  return crypto.createHash('sha256').update(data).digest('hex')\n}\n\nfunction sameContent(a: string, b: string): boolean {\n  return sha256(a) === sha256(b)\n}\n\nfunction deepMergeSettings(existing: unknown, incoming: unknown): unknown {\n  if (Array.isArray(existing) && Array.isArray(incoming)) {\n    return incoming\n  }\n  if (\n    typeof existing === 'object' &&\n    existing !== null &&\n    typeof incoming === 'object' &&\n    incoming !== null\n  ) {\n    const result: Record<string, unknown> = { ...existing }\n    for (const [key, value] of Object.entries(incoming)) {\n      if (key in result) {\n        result[key] = deepMergeSettings(result[key], value)\n      } else {\n        result[key] = value\n      }\n    }\n    return result\n  }\n  return incoming\n}\n\nexport function syncClaudeCode(opts: SyncOptions): SyncReport {\n  const report: SyncReport = {\n    written: [],\n    skipped: [],\n    preserved: [],\n    warnings: [],\n    settingsTouched: []\n  }\n\n  const payloadClaude = path.join(opts.payloadRoot, '.claude')\n  if (!fs.existsSync(payloadClaude)) {\n    report.warnings.push(`payload .claude directory not found: ${payloadClaude}`)\n    return report\n  }\n\n  if (!opts.dryRun) {\n    fs.mkdirSync(opts.targetDir, { recursive: true })\n  }\n\n  for (const subdir of COPY_SUBDIRS) {\n    const srcDir = path.join(payloadClaude, subdir)\n    if (!fs.existsSync(srcDir)) {\n      continue\n    }\n\n    const destDir = path.join(opts.targetDir, subdir)\n    if (!opts.dryRun) {\n      fs.mkdirSync(destDir, { recursive: true })\n    }\n\n    for (const entry of walkSync(srcDir)) {\n      const relativePath = path.relative(srcDir, entry)\n      const srcFile = entry\n      const destFile = path.join(destDir, relativePath)\n\n      if (fs.existsSync(destFile) && sameContent(srcFile, destFile)) {\n        report.skipped.push(path.join('.claude', subdir, relativePath))\n        continue\n      }\n\n      if (!opts.dryRun) {\n        fs.mkdirSync(path.dirname(destFile), { recursive: true })\n        fs.copyFileSync(srcFile, destFile)\n      }\n      report.written.push(path.join('.claude', subdir, relativePath))\n    }\n  }\n\n  // settings.json merge\n  const payloadSettings = path.join(payloadClaude, 'settings.json')\n  const targetSettings = path.join(opts.targetDir, 'settings.json')\n  if (fs.existsSync(payloadSettings)) {\n    const incoming = JSON.parse(fs.readFileSync(payloadSettings, 'utf8'))\n    let merged = incoming\n    if (fs.existsSync(targetSettings)) {\n      const existing = JSON.parse(fs.readFileSync(targetSettings, 'utf8'))\n      merged = deepMergeSettings(existing, incoming)\n    }\n\n    const wouldChange =\n      !fs.existsSync(targetSettings) ||\n      JSON.stringify(merged) !== JSON.stringify(JSON.parse(fs.readFileSync(targetSettings, 'utf8')))\n\n    if (wouldChange) {\n      if (!opts.dryRun) {\n        fs.writeFileSync(targetSettings, JSON.stringify(merged, null, 2) + '\\n')\n      }\n      report.written.push('.claude/settings.json')\n      report.settingsTouched = ['.claude/settings.json']\n    } else {\n      report.skipped.push('.claude/settings.json')\n    }\n  }\n\n  // CLAUDE.md merge\n  const payloadClaudeMd = path.join(opts.payloadRoot, 'CLAUDE.md')\n  const targetClaudeMd = path.join(path.dirname(opts.targetDir), 'CLAUDE.md')\n  if (fs.existsSync(payloadClaudeMd)) {\n    const incomingBlock = fs.readFileSync(payloadClaudeMd, 'utf8')\n    const existing = fs.existsSync(targetClaudeMd)\n      ? fs.readFileSync(targetClaudeMd, 'utf8')\n      : undefined\n    const merged = mergeManagedBlock(existing, incomingBlock)\n\n    if (merged !== existing) {\n      if (!opts.dryRun) {\n        fs.writeFileSync(targetClaudeMd, merged)\n      }\n      report.written.push('CLAUDE.md')\n    } else {\n      report.skipped.push('CLAUDE.md')\n    }\n  }\n\n  return report\n}\n\nfunction* walkSync(dir: string): Generator<string> {\n  const entries = fs.readdirSync(dir, { withFileTypes: true })\n  for (const entry of entries) {\n    const fullPath = path.join(dir, entry.name)\n    if (entry.isDirectory()) {\n      yield* walkSync(fullPath)\n    } else {\n      yield fullPath\n    }\n  }\n}\n","const BEGIN = '<!-- lincoln:begin -->'\nconst END = '<!-- lincoln:end -->'\n\nexport function mergeManagedBlock(\n  existing: string | undefined,\n  block: string\n): string {\n  const wrapped = `${BEGIN}\\n${block}\\n${END}`\n  const text = existing ?? ''\n\n  const beginIndex = text.indexOf(BEGIN)\n  const endIndex = text.indexOf(END)\n\n  if (beginIndex !== -1 && endIndex !== -1 && endIndex > beginIndex) {\n    return (\n      text.slice(0, beginIndex) +\n      wrapped +\n      text.slice(endIndex + END.length)\n    )\n  }\n\n  if (text.trim().length === 0) {\n    return wrapped\n  }\n\n  return `${text.trimEnd()}\\n\\n${wrapped}\\n`\n}\n\nexport function extractManagedBlock(existing: string): string | undefined {\n  const beginIndex = existing.indexOf(BEGIN)\n  const endIndex = existing.indexOf(END)\n  if (beginIndex === -1 || endIndex === -1 || endIndex <= beginIndex) {\n    return undefined\n  }\n  return existing\n    .slice(beginIndex + BEGIN.length, endIndex)\n    .replace(/^\\n+|\\n+$/g, '')\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport os from 'node:os'\n\nexport type HarnessId = 'claude-code' | 'codex' | 'opencode'\n\nexport interface GlobalHarnessInfo {\n  id: HarnessId\n  installed: boolean\n  configDir: string\n  pluginManaged: boolean\n}\n\ninterface HarnessSpec {\n  id: HarnessId\n  configDirName: string\n  pluginMarker?: string\n}\n\nconst HARNESS_SPECS: HarnessSpec[] = [\n  {\n    id: 'claude-code',\n    configDirName: '.claude',\n    pluginMarker: 'plugins/lincoln'\n  },\n  { id: 'codex', configDirName: '.codex' },\n  { id: 'opencode', configDirName: '.opencode' }\n]\n\nexport function detectGlobalHarnesses(\n  overrideHomeDir?: string\n): GlobalHarnessInfo[] {\n  const homeDir = overrideHomeDir ?? os.homedir()\n\n  return HARNESS_SPECS.map((spec) => {\n    const configDir = path.join(homeDir, spec.configDirName)\n    const installed = fs.existsSync(configDir)\n    const pluginManaged = spec.pluginMarker\n      ? fs.existsSync(path.join(configDir, spec.pluginMarker))\n      : false\n\n    return {\n      id: spec.id,\n      installed,\n      configDir,\n      pluginManaged\n    }\n  })\n}\n\nexport function installedHarnessIds(homeDir?: string): HarnessId[] {\n  return detectGlobalHarnesses(homeDir)\n    .filter((h) => h.installed)\n    .map((h) => h.id)\n}\n","import { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { readVersionMarker } from '../lib/versionMarker.js'\nimport { createRegistryClient } from '../lib/npmRegistry.js'\nimport { compareVersions } from '../lib/semver.js'\nimport { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { install } from './install.js'\nimport type { InstallOptions } from './install.js'\n\nconst PACKAGE_NAME = '@sushanglewis/lincoln'\n\nexport interface UpdateOptions {\n  check: boolean\n  dryRun: boolean\n  yes: boolean\n}\n\nexport interface UpdateDeps {\n  paths: LincolnPaths\n  latestVersion: () => Promise<string>\n  currentVersion: () => string | undefined\n  npmInstallGlobal: (version: string) => Promise<number>\n  runInstall: (options: InstallOptions) => Promise<number>\n}\n\nexport function createDefaultDeps(): UpdateDeps {\n  const paths = resolveLincolnPaths()\n  const registry = createRegistryClient()\n  return {\n    paths,\n    latestVersion: () => registry.latestVersion(PACKAGE_NAME),\n    currentVersion: () => readVersionMarker(paths)?.version ?? readLocalPackageVersion(),\n    npmInstallGlobal: (version) => runNpmInstallGlobal(PACKAGE_NAME, version),\n    runInstall: (options) => install(options)\n  }\n}\n\nexport async function update(\n  options: UpdateOptions,\n  deps: Partial<UpdateDeps> = {}\n): Promise<number> {\n  const resolved: UpdateDeps = { ...createDefaultDeps(), ...deps }\n\n  let latest: string\n  try {\n    latest = await resolved.latestVersion()\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to query npm registry: ${message}`)\n    return 1\n  }\n\n  const current = resolved.currentVersion()\n\n  if (current !== undefined) {\n    const comparison = compareVersions(current, latest)\n    if (comparison !== undefined ? comparison > 0 : false) {\n      console.log(\n        `Lincoln ${current} is ahead of the latest release (${latest}); nothing to do.`\n      )\n      return 0\n    }\n    if (comparison !== undefined ? comparison === 0 : current === latest) {\n      console.log(`Lincoln ${current} is already up to date.`)\n      return 0\n    }\n  }\n\n  const summary = `${current ?? 'unknown'} -> ${latest}`\n\n  if (options.check) {\n    console.log(`Lincoln update available: ${summary}`)\n    return 0\n  }\n\n  if (options.dryRun) {\n    console.log(`Dry run: would update Lincoln ${summary}`)\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error(`Will update Lincoln ${summary}. Run with --yes to proceed.`)\n    return 1\n  }\n\n  const installCode = await resolved.npmInstallGlobal(latest)\n  if (installCode !== 0) {\n    console.error(`npm install -g ${PACKAGE_NAME}@${latest} failed with exit code ${installCode}`)\n    return 1\n  }\n\n  // NOTE: this runs the *current* process's install(), not the just-installed\n  // new version's. Re-executing the freshly installed `lincoln` binary would\n  // rely on PATH/npx resolution picking up the new shim, which is fragile\n  // mid-upgrade. The tradeoff is that sync logic changes shipped in the new\n  // version only take effect on the next command run.\n  const syncCode = await resolved.runInstall(defaultInstallOptions())\n  if (syncCode !== 0) {\n    console.error(`lincoln install failed with exit code ${syncCode}`)\n    return 1\n  }\n\n  console.log(`Updated Lincoln to ${latest}`)\n  return 0\n}\n\nfunction defaultInstallOptions(): InstallOptions {\n  return { yes: true, dryRun: false, force: false, harnesses: [], noVenv: true }\n}\n\nfunction runNpmInstallGlobal(packageName: string, version: string): Promise<number> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['install', '-g', `${packageName}@${version}`], {\n      stdio: 'inherit',\n      shell: process.platform === 'win32'\n    })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', () => resolvePromise(1))\n  })\n}\n","const DEFAULT_REGISTRY_URL = 'https://registry.npmjs.org'\nconst FETCH_TIMEOUT_MS = 15_000\n\nexport interface NpmDistTags {\n  latest?: string\n  [tag: string]: string | undefined\n}\n\nexport interface NpmVersionMetadata {\n  version?: string\n  dist?: {\n    tarball?: string\n  }\n}\n\nexport interface NpmPackument {\n  name?: string\n  'dist-tags'?: NpmDistTags\n  versions?: Record<string, NpmVersionMetadata>\n}\n\nexport interface RegistryClient {\n  latestVersion(packageName: string): Promise<string>\n  versions(packageName: string): Promise<string[]>\n  resolveVersion(packageName: string, spec: string): Promise<string>\n}\n\nexport function createRegistryClient(\n  registryUrl: string = DEFAULT_REGISTRY_URL,\n  fetchImpl: typeof fetch = fetch\n): RegistryClient {\n  const baseUrl = registryUrl.replace(/\\/+$/, '')\n\n  async function fetchPackument(packageName: string): Promise<NpmPackument> {\n    const url = `${baseUrl}/${encodePackageName(packageName)}`\n    const response = await fetchImpl(url, {\n      headers: { Accept: 'application/json' },\n      signal: AbortSignal.timeout(FETCH_TIMEOUT_MS)\n    })\n    if (!response.ok) {\n      throw new Error(\n        `npm registry returned ${response.status} ${response.statusText} for ${packageName}`\n      )\n    }\n    return (await response.json()) as NpmPackument\n  }\n\n  return {\n    async latestVersion(packageName: string): Promise<string> {\n      const packument = await fetchPackument(packageName)\n      const latest = packument['dist-tags']?.latest\n      if (!latest) {\n        throw new Error(`npm registry has no latest dist-tag for ${packageName}`)\n      }\n      return latest\n    },\n\n    async versions(packageName: string): Promise<string[]> {\n      const packument = await fetchPackument(packageName)\n      return Object.keys(packument.versions ?? {})\n    },\n\n    async resolveVersion(packageName: string, spec: string): Promise<string> {\n      const packument = await fetchPackument(packageName)\n      const tagTarget = packument['dist-tags']?.[spec]\n      if (tagTarget) {\n        return tagTarget\n      }\n      if (packument.versions && spec in packument.versions) {\n        return spec\n      }\n      throw new Error(`Version not found for ${packageName}: ${spec}`)\n    }\n  }\n}\n\nfunction encodePackageName(packageName: string): string {\n  if (packageName.startsWith('@')) {\n    const slash = packageName.indexOf('/')\n    if (slash === -1) {\n      return encodeURIComponent(packageName)\n    }\n    const scope = packageName.slice(1, slash)\n    const name = packageName.slice(slash + 1)\n    return `@${encodeURIComponent(scope)}%2F${encodeURIComponent(name)}`\n  }\n  return encodeURIComponent(packageName)\n}\n","const SEMVER_CORE = /^v?(\\d+)\\.(\\d+)\\.(\\d+)(?:-([0-9A-Za-z.-]+))?(?:\\+[0-9A-Za-z.-]+)?$/\nconst NUMERIC_IDENTIFIER = /^\\d+$/\n\ninterface ParsedVersion {\n  major: number\n  minor: number\n  patch: number\n  prerelease: string[]\n}\n\n/**\n * Compares two semver strings per semver.org precedence rules (build metadata\n * ignored). Returns a negative number when a < b, 0 when equal, a positive\n * number when a > b, or undefined when either input is not a parseable semver.\n */\nexport function compareVersions(a: string, b: string): number | undefined {\n  const pa = parseVersion(a)\n  const pb = parseVersion(b)\n  if (!pa || !pb) {\n    return undefined\n  }\n  if (pa.major !== pb.major) return pa.major - pb.major\n  if (pa.minor !== pb.minor) return pa.minor - pb.minor\n  if (pa.patch !== pb.patch) return pa.patch - pb.patch\n  return comparePrerelease(pa.prerelease, pb.prerelease)\n}\n\nfunction parseVersion(version: string): ParsedVersion | undefined {\n  const match = SEMVER_CORE.exec(version.trim())\n  if (!match) {\n    return undefined\n  }\n  return {\n    major: Number(match[1]),\n    minor: Number(match[2]),\n    patch: Number(match[3]),\n    prerelease: match[4] ? match[4].split('.') : []\n  }\n}\n\nfunction comparePrerelease(a: string[], b: string[]): number {\n  if (a.length === 0 && b.length === 0) return 0\n  // A version without a prerelease has higher precedence than one with it.\n  if (a.length === 0) return 1\n  if (b.length === 0) return -1\n  const shared = Math.min(a.length, b.length)\n  for (let i = 0; i < shared; i++) {\n    const x = a[i]\n    const y = b[i]\n    if (x === y) continue\n    const xNumeric = NUMERIC_IDENTIFIER.test(x)\n    const yNumeric = NUMERIC_IDENTIFIER.test(y)\n    if (xNumeric && yNumeric) return Number(x) - Number(y)\n    // Numeric identifiers have lower precedence than alphanumeric ones.\n    if (xNumeric) return -1\n    if (yNumeric) return 1\n    return x < y ? -1 : 1\n  }\n  return a.length - b.length\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { spawn } from 'node:child_process'\nimport type { LincolnPaths } from '../lib/paths.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport { createRegistryClient } from '../lib/npmRegistry.js'\nimport { install } from './install.js'\nimport type { InstallOptions } from './install.js'\n\nconst PACKAGE_NAME = '@sushanglewis/lincoln'\nconst SEMVER_REGEX = /^v?\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/\nconst STRICT_SEMVER_REGEX = /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/\nconst DIST_TAG_REGEX = /^[a-zA-Z][a-zA-Z0-9._-]*$/\n\nexport interface UseOptions {\n  dryRun: boolean\n  yes: boolean\n}\n\nexport interface UseDeps {\n  paths: LincolnPaths\n  resolveVersion: (spec: string) => Promise<string>\n  ensureVersionAvailable: (version: string) => Promise<void>\n  npmGlobalRoot: () => Promise<string | undefined>\n  runInstall: (options: InstallOptions) => Promise<number>\n}\n\nexport function createDefaultDeps(): UseDeps {\n  const paths = resolveLincolnPaths()\n  const registry = createRegistryClient()\n  return {\n    paths,\n    resolveVersion: async (spec) => {\n      // Exact (optionally v-prefixed) versions resolve locally without a\n      // registry round-trip, so switching between installed versions works\n      // offline. Dist-tags (latest, next, ...) need the registry.\n      const normalized = spec.startsWith('v') ? spec.slice(1) : spec\n      if (STRICT_SEMVER_REGEX.test(normalized)) {\n        return normalized\n      }\n      return registry.resolveVersion(PACKAGE_NAME, spec)\n    },\n    ensureVersionAvailable: async (version) => {\n      const code = await runNpmInstallGlobal(PACKAGE_NAME, version)\n      if (code !== 0) {\n        throw new Error(`npm install -g ${PACKAGE_NAME}@${version} exited with ${code}`)\n      }\n    },\n    npmGlobalRoot: () => runNpmRootGlobal(),\n    runInstall: (options) => install(options)\n  }\n}\n\nexport async function use(\n  spec: string,\n  options: UseOptions,\n  deps: Partial<UseDeps> = {}\n): Promise<number> {\n  if (!isValidVersion(spec)) {\n    console.error(`Invalid version: ${spec}`)\n    return 1\n  }\n\n  const resolved: UseDeps = { ...createDefaultDeps(), ...deps }\n\n  let version: string\n  try {\n    version = await resolved.resolveVersion(spec)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to resolve version ${spec}: ${message}`)\n    return 1\n  }\n\n  const versionDir = path.join(resolved.paths.versionsDir, version)\n  const alreadyInstalled = fs.existsSync(versionDir)\n\n  if (options.dryRun) {\n    if (alreadyInstalled) {\n      console.log(`Dry run: would switch ${resolved.paths.currentDir} to ${versionDir}`)\n    } else {\n      console.log(\n        `Dry run: would install ${PACKAGE_NAME}@${version} globally, then switch ${resolved.paths.currentDir} to ${versionDir}`\n      )\n    }\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error(`Will switch Lincoln to ${version}. Run with --yes to proceed.`)\n    return 1\n  }\n\n  if (!alreadyInstalled) {\n    try {\n      await resolved.ensureVersionAvailable(version)\n    } catch (err) {\n      const message = err instanceof Error ? err.message : String(err)\n      console.error(`Failed to install ${PACKAGE_NAME}@${version}: ${message}`)\n      return 1\n    }\n\n    if (!fs.existsSync(versionDir)) {\n      // `npm install -g` places the package in the npm global root; it does\n      // not populate ~/.lincoln/versions. Copy the payload over so the\n      // version switch below has a real directory to point at.\n      try {\n        await copyVersionFromNpmGlobal(resolved, versionDir)\n      } catch (err) {\n        const message = err instanceof Error ? err.message : String(err)\n        console.error(`Failed to populate ${versionDir}: ${message}`)\n        return 1\n      }\n    }\n\n    if (!fs.existsSync(versionDir)) {\n      console.error(\n        `Provisioning ${PACKAGE_NAME}@${version} did not produce ${versionDir}; cannot switch versions.`\n      )\n      return 1\n    }\n  }\n\n  try {\n    switchCurrentLink(resolved.paths, versionDir)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to switch ${resolved.paths.currentDir}: ${message}`)\n    return 1\n  }\n\n  const syncCode = await resolved.runInstall(defaultInstallOptions())\n  if (syncCode !== 0) {\n    console.error(`lincoln install failed with exit code ${syncCode}`)\n    return 1\n  }\n\n  // The trailing install re-points ~/.lincoln/current at the *running* CLI's\n  // own version dir (Task 9 behavior, pending the install payload fix).\n  // Re-assert the requested version so the switch actually sticks.\n  try {\n    switchCurrentLink(resolved.paths, versionDir)\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to switch ${resolved.paths.currentDir}: ${message}`)\n    return 1\n  }\n\n  console.log(`Switched Lincoln to ${version}`)\n  return 0\n}\n\nfunction isValidVersion(version: string): boolean {\n  return SEMVER_REGEX.test(version) || DIST_TAG_REGEX.test(version)\n}\n\nasync function copyVersionFromNpmGlobal(deps: UseDeps, versionDir: string): Promise<void> {\n  const globalRoot = await deps.npmGlobalRoot()\n  if (!globalRoot) {\n    return\n  }\n  const packageRoot = path.join(globalRoot, ...PACKAGE_NAME.split('/'))\n  if (!fs.existsSync(packageRoot)) {\n    return\n  }\n  fs.mkdirSync(path.dirname(versionDir), { recursive: true })\n  fs.cpSync(packageRoot, versionDir, { recursive: true })\n}\n\nfunction switchCurrentLink(paths: LincolnPaths, versionDir: string): void {\n  fs.mkdirSync(paths.lincolnHome, { recursive: true })\n  try {\n    fs.rmSync(paths.currentDir, { recursive: true, force: true })\n    fs.symlinkSync(versionDir, paths.currentDir)\n  } catch {\n    fs.rmSync(paths.currentDir, { recursive: true, force: true })\n    fs.cpSync(versionDir, paths.currentDir, { recursive: true, force: true })\n  }\n}\n\nfunction defaultInstallOptions(): InstallOptions {\n  return { yes: true, dryRun: false, force: false, harnesses: [], noVenv: true }\n}\n\nfunction runNpmInstallGlobal(packageName: string, version: string): Promise<number> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['install', '-g', `${packageName}@${version}`], {\n      stdio: 'inherit',\n      shell: process.platform === 'win32'\n    })\n    child.on('close', (code) => resolvePromise(code ?? 1))\n    child.on('error', () => resolvePromise(1))\n  })\n}\n\nfunction runNpmRootGlobal(): Promise<string | undefined> {\n  return new Promise((resolvePromise) => {\n    const child = spawn('npm', ['root', '-g'], {\n      stdio: ['ignore', 'pipe', 'ignore'],\n      shell: process.platform === 'win32'\n    })\n    let stdout = ''\n    child.stdout?.on('data', (chunk: Buffer | string) => {\n      stdout += chunk.toString()\n    })\n    child.on('close', (code) => {\n      const root = stdout.trim()\n      resolvePromise(code === 0 && root.length > 0 ? root : undefined)\n    })\n    child.on('error', () => resolvePromise(undefined))\n  })\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport { listVendoredFrameworkFiles } from '../lib/projectFiles.js'\nimport { readLocalPackageVersion } from '../lib/packageInfo.js'\nimport { writeProjectMarker } from '../lib/marker.js'\nimport { resolveLincolnPaths } from '../lib/paths.js'\nimport type { LincolnPaths } from '../lib/paths.js'\n\nexport interface MigrateProjectOptions {\n  dryRun?: boolean\n  yes?: boolean\n  force?: boolean\n}\n\nexport interface MigrateProjectDeps {\n  paths: LincolnPaths\n  listVendoredFrameworkFiles: (\n    payloadRoot: string,\n    projectRoot: string\n  ) => ReturnType<typeof listVendoredFrameworkFiles>\n  writeProjectMarker: typeof writeProjectMarker\n}\n\nexport function createDefaultDeps(): MigrateProjectDeps {\n  return {\n    paths: resolveLincolnPaths(),\n    listVendoredFrameworkFiles,\n    writeProjectMarker\n  }\n}\n\nexport async function migrateProject(\n  projectRoot: string,\n  options: MigrateProjectOptions = {},\n  deps: MigrateProjectDeps = createDefaultDeps()\n): Promise<number> {\n  const payloadRoot = deps.paths.currentDir\n  if (!fs.existsSync(payloadRoot)) {\n    console.error(`Lincoln payload not found at ${payloadRoot}. Run \"lincoln install\" first.`)\n    return 1\n  }\n\n  const absoluteProjectRoot = path.resolve(projectRoot)\n  const report = deps.listVendoredFrameworkFiles(payloadRoot, absoluteProjectRoot)\n\n  if (options.dryRun) {\n    console.log(`Dry run: would migrate ${absoluteProjectRoot}`)\n    if (report.removable.length > 0) {\n      console.log('Would remove unmodified framework files:')\n      for (const f of report.removable) console.log(`  - ${f}`)\n    }\n    if (report.modified.length > 0) {\n      console.log('Would preserve modified framework files:')\n      for (const f of report.modified) console.log(`  - ${f}`)\n    }\n    if (report.preserved.length > 0) {\n      console.log('Would preserve project-local files:')\n      for (const f of report.preserved) console.log(`  - ${f}`)\n    }\n    console.log('Would create .lincoln.yaml')\n    return 0\n  }\n\n  if (!options.yes) {\n    console.error('This will remove vendored framework files. Run with --yes to proceed.')\n    return 1\n  }\n\n  for (const file of report.removable) {\n    const filePath = path.join(absoluteProjectRoot, file)\n    try {\n      fs.rmSync(filePath)\n      // Remove empty parent directories up to project root\n      let dir = path.dirname(filePath)\n      while (dir !== absoluteProjectRoot && fs.existsSync(dir)) {\n        const entries = fs.readdirSync(dir)\n        if (entries.length === 0) {\n          fs.rmdirSync(dir)\n          dir = path.dirname(dir)\n        } else {\n          break\n        }\n      }\n    } catch (err) {\n      const message = err instanceof Error ? err.message : String(err)\n      console.error(`Failed to remove ${file}: ${message}`)\n      return 1\n    }\n  }\n\n  if (report.modified.length > 0) {\n    console.log('Preserved modified framework files:')\n    for (const f of report.modified) console.log(`  - ${f}`)\n  }\n\n  if (report.preserved.length > 0) {\n    console.log('Preserved project-local files:')\n    for (const f of report.preserved) console.log(`  - ${f}`)\n  }\n\n  try {\n    deps.writeProjectMarker(\n      absoluteProjectRoot,\n      {\n        enabled: true,\n        workflow_template: 'interview-to-knowledge',\n        min_lincoln_version: readLocalPackageVersion() ?? '1.5.0'\n      },\n      { force: options.force }\n    )\n  } catch (err) {\n    const message = err instanceof Error ? err.message : String(err)\n    console.error(`Failed to write .lincoln.yaml: ${message}`)\n    return 1\n  }\n\n  console.log(`Migrated project at ${absoluteProjectRoot}`)\n  console.log(`Removed ${report.removable.length} unmodified framework files`)\n  return 0\n}\n","import fs from 'node:fs'\nimport path from 'node:path'\nimport crypto from 'node:crypto'\n\n// Mirrors scripts/package-lincoln-plugin.py and scripts/sync-framework-package.mjs\nexport const FRAMEWORK_ALLOWLIST_DIRS = ['.claude', '.claude-plugin', 'scripts', 'tools']\nexport const FRAMEWORK_ALLOWLIST_FILES = [\n  'README.md',\n  'README.en.md',\n  'USAGE.md',\n  'CONTRIBUTING.md',\n  'CLAUDE.md',\n  'LICENSE',\n  'RELEASE.md',\n  '.version-bump.json',\n  'requirements.txt',\n  'SKILL.md'\n]\nexport const FRAMEWORK_DENYLIST_NAMES = new Set([\n  '.git',\n  '.context',\n  '.venv',\n  'venv',\n  'dist',\n  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string\n): VendoredFileReport {\n  const report: VendoredFileReport = { removable: [], modified: [], preserved: [] }\n\n  function walk(dir: string): void {\n    const entries = fs.readdirSync(dir, { withFileTypes: true })\n    for (const entry of entries) {\n      const fullPath = path.join(dir, entry.name)\n      const relativePath = path.relative(projectRoot, fullPath)\n\n      if (entry.isDirectory()) {\n        if (isPreservedDir(relativePath)) {\n          walk(fullPath)\n        } else if (!isDenied(relativePath)) {\n          walk(fullPath)\n        }\n        continue\n      }\n\n      if (isPreserved(relativePath)) {\n        report.preserved.push(relativePath)\n        continue\n      }\n\n      if (isDenied(relativePath)) continue\n      if (!isAllowlisted(relativePath)) continue\n\n      const payloadFile = path.join(payloadRoot, relativePath)\n      if (!fs.existsSync(payloadFile)) {\n        report.modified.push(relativePath)\n        continue\n      }\n\n      if (sha256(fullPath) === sha256(payloadFile)) {\n        report.removable.push(relativePath)\n      } else {\n        report.modified.push(relativePath)\n      }\n    }\n  }\n\n  if (fs.existsSync(projectRoot)) {\n    walk(projectRoot)\n  }\n\n  return report\n}\n","import { spawn, type ChildProcess } from 'node:child_process'\nimport { EventEmitter } from 'node:events'\n\nexport interface RecordDeps {\n  spawn: (\n    command: string,\n    args: readonly string[],\n    options: { stdio: 'inherit' }\n  ) => ChildProcess\n}\n\nexport function createDefaultDeps(): RecordDeps {\n  return { spawn }\n}\n\nexport function record(args: string[], deps: RecordDeps = createDefaultDeps()): Promise<number> {\n  return new Promise((resolve) => {\n    const child = deps.spawn('lincoln-record', args, { stdio: 'inherit' })\n    child.on('error', (err: Error) => {\n      console.error(`Failed to start lincoln-record: ${err.message}`)\n      resolve(1)\n    })\n    child.on('close', (code: number | null) 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package/framework/.claude-plugin/marketplace.json

@@ -9,7 +9,7 @@
     {
       "name": "lincoln",
       "description": "AI-Native product R&D collaboration system for Conductor + Claude Code. Orchestrates stages, gates, artifacts, skills, and roles across product, design, and engineering into a repeatable workflow from recordings to GitHub Issues to Obsidian knowledge base.",
-      "version": "1.5.2",
+      "version": "1.5.4",
       "author": {
         "name": "Lincoln contributors"
       },
@@ -28,5 +28,5 @@
       ]
     }
   ],
-  "version": "1.5.2"
+  "version": "1.5.4"
 }

package/framework/.claude-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "lincoln",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "AI-Native product R&D collaboration system for Conductor + Claude Code + OpenSpec + GitHub + Obsidian",
   "author": {
     "name": "Lincoln contributors"

package/framework/.version-bump.json

@@ -1,5 +1,5 @@
 {
-  "version": "1.5.2",
+  "version": "1.5.4",
   "manifests": [
     {
       "path": ".claude-plugin/plugin.json",

package/framework/README.en.md

@@ -27,14 +27,70 @@ Open the repo and tell the Agent what you want in plain language. Lincoln will r
 
 ## Installation
 
-Lincoln is now distributed as a global npm plugin:
+### Prerequisites
+
+- Node.js ≥ 20
+- Python 3.10+ (`lincoln install` will auto-detect `python3.12 / 3.11 / 3.10` and create a virtual environment)
+- At least one agent harness installed: `Claude Code`, `Codex`, or `OpenCode`
+
+### Install Lincoln
+
+```bash
+npm install -g @sushanglewis/lincoln
+lincoln install --yes
+```
+
+> **Note**: `npm install -g` only installs the CLI and bundled framework payload; **you must run `lincoln install`** to sync hooks, agents, skills, scripts, and the full runtime framework to `~/.claude/`, `~/.codex/`, and `~/.opencode/`.
+
+If you previously installed the legacy `lincoln-install` package, uninstall it first (its bin names conflict with the new package):
 
 ```bash
+npm uninstall -g lincoln-install
 npm install -g @sushanglewis/lincoln
-lincoln install
+lincoln install --yes
+```
+
+To force a reinstall:
+
+```bash
+npm install -g @sushanglewis/lincoln --force
+lincoln install --yes
+```
+
+### Verify the installation
+
+```bash
+lincoln --version
+lincoln doctor --json
 ```
 
-`lincoln install` syncs the runtime framework to `~/.claude/`, `~/.codex/`, and `~/.opencode/`. Projects only need a `.lincoln.yaml` marker to opt in (empty directories won't activate Lincoln).
+`lincoln doctor --json` checks Node, Python, PyYAML, npm, the global marker, payload hooks, venv, and project marker.
+
+### Enable Lincoln in a project
+
+Lincoln hooks are **off by default** in directories without a marker. In your project root run:
+
+```bash
+cd your-project
+lincoln init-project
+```
+
+This creates a `.lincoln.yaml` marker file. After that, opening Claude Code in this directory will load the `/lc-*` commands.
+
+### Update Lincoln
+
+```bash
+lincoln update
+```
+
+### Migrate from the old vendored model
+
+If your project previously committed the Lincoln framework source directly into the repo:
+
+```bash
+lincoln migrate-project --dry-run   # preview files to remove
+lincoln migrate-project --yes       # confirm migration
+```
 
 The legacy `npx lincoln-install` / `npx lincoln-update` wrappers are still present but deprecated; migrate to the global CLI.
 

package/framework/README.md

@@ -27,14 +27,70 @@ Lincoln 是一个贯穿 **IDE、Agent Harness、代码托管、知识管理、
 
 ## 安装
 
-Lincoln 现在以全局 npm 插件的形式分发：
+### 前置条件
+
+- Node.js ≥ 20
+- Python 3.10+（`lincoln install` 会自动探测 `python3.12 / 3.11 / 3.10` 并创建虚拟环境）
+- 已安装至少一个 agent harness：`Claude Code`、`Codex` 或 `OpenCode`
+
+### 安装 Lincoln
+
+```bash
+npm install -g @sushanglewis/lincoln
+lincoln install --yes
+```
+
+> **注意**：`npm install -g` 只是把 CLI 和框架 payload 安装到 npm 全局目录；**必须执行 `lincoln install`**，才会把 hooks、agents、skills、scripts 等完整运行时体系同步到 `~/.claude/`、`~/.codex/`、`~/.opencode/`。
+
+如果之前安装过旧版 `lincoln-install`，需要先卸载（旧包与新版 bin 名冲突）：
 
 ```bash
+npm uninstall -g lincoln-install
 npm install -g @sushanglewis/lincoln
-lincoln install
+lincoln install --yes
+```
+
+若要强制重装，可加上 `--force`：
+
+```bash
+npm install -g @sushanglewis/lincoln --force
+lincoln install --yes
+```
+
+### 验证安装
+
+```bash
+lincoln --version
+lincoln doctor --json
 ```
 
-`lincoln install` 会把运行时框架同步到 `~/.claude/`、`~/.codex/`、`~/.opencode/`。项目侧只需一个 `.lincoln.yaml` 标记即可选择性激活（空目录不会触发 Lincoln）。
+`lincoln doctor --json` 会输出 Node、Python、PyYAML、npm、全局 marker、payload hooks、venv、项目 marker 等检查项。
+
+### 在项目中启用
+
+Lincoln hooks 默认**不会**在空目录激活。进入项目后执行：
+
+```bash
+cd your-project
+lincoln init-project
+```
+
+这会在项目根目录创建 `.lincoln.yaml` 标记文件，之后在该目录打开 Claude Code 即可使用 `/lc-*` 命令。
+
+### 更新 Lincoln
+
+```bash
+lincoln update
+```
+
+### 从旧版 vendored 模式迁移
+
+如果你的项目之前是把 Lincoln 框架源码直接提交到仓库里的，可以用：
+
+```bash
+lincoln migrate-project --dry-run   # 先看看会删哪些文件
+lincoln migrate-project --yes       # 确认迁移
+```
 
 旧版 `npx lincoln-install` / `npx lincoln-update` 仍保留但已弃用，建议迁移到全局 CLI。
 

package/framework/manifest.json

@@ -1,6 +1,6 @@
 {
-  "version": "1.5.2",
-  "generatedAt": "2026-08-06T03:07:34.713Z",
+  "version": "1.5.4",
+  "generatedAt": "2026-08-06T03:47:12.007Z",
   "files": [
     {
       "path": ".claude-plugin/hooks.json",
@@ -8,11 +8,11 @@
     },
     {
       "path": ".claude-plugin/marketplace.json",
-      "sha256": "e3d11b11dc35a096064cff03df0fdef5dec12f75387d44634a22b02c160affab"
+      "sha256": "3416511abe2f0fe63b7108a99b4386974ed5a1d9165f54cc21ceefa215ddb5a9"
     },
     {
       "path": ".claude-plugin/plugin.json",
-      "sha256": "78a1c6fbc6c3cee62560e64edd8fe4d10beab2b080de4bd8e4f02743933e79f9"
+      "sha256": "a95de6491156662f078aeb4b9b3b46e222fcb0b6ef3a6a14f280e23b1c5ad1af"
     },
     {
       "path": ".claude/agents/_contract.md",
@@ -488,7 +488,7 @@
     },
     {
       "path": ".version-bump.json",
-      "sha256": "06f7b8cf78e406b87124b1a3c38c917517c4e6b1a37c5d812c485a64ef2c53e6"
+      "sha256": "e17ad70c1076bcef5ed4401960fd8bbf31eb0c4d6f023efff6a1d1fe91e3f7e6"
     },
     {
       "path": "CLAUDE.md",
@@ -504,11 +504,11 @@
     },
     {
       "path": "README.en.md",
-      "sha256": "bfcfcb255a2289a0018a13c19f3fef7e52e6c48bbe6b755bba90deb33de1d459"
+      "sha256": "dc352b91f0b134a7119062a716b34a84ea0a9f62777f5c7f6dbbca8a8ea3cb99"
     },
     {
       "path": "README.md",
-      "sha256": "f26116a64f7c057aaacbddc56ce3e874cc337c20ec7e158fce39ef87dfb80bb4"
+      "sha256": "5f6a04b52cd7ed056511857b99ef9cb58b9da6001fa14d6a958247167025c172"
     },
     {
       "path": "RELEASE.md",
@@ -696,7 +696,7 @@
     },
     {
       "path": "tools/lincoln-installer/package.json",
-      "sha256": "8b069894f9cde9a2f724810d92e8f14ba1e8e909d39c1fd40a971731b3d79ece"
+      "sha256": "634627c4dc491da303e21601d284258926a7663a628530fbce2bbe0eef136a4d"
     },
     {
       "path": "tools/lincoln-installer/src/cli.tsx",
@@ -988,11 +988,11 @@
     },
     {
       "path": "tools/lincoln/package-lock.json",
-      "sha256": "dbbd918a124e77006738ed4830d026eecf4304cfd4b8937159b53d304ef16743"
+      "sha256": "895bff7b343cc24e4152ca57942b3219e0e59a65416297619d03f4acd2a945c1"
     },
     {
       "path": "tools/lincoln/package.json",
-      "sha256": "d23a2993785b5eabccbb3d11341f935e60dfdc28d3dc6435f8479417e9f204a5"
+      "sha256": "4bb2ca50fd059d0885989d619b852c3473be4ad55d508013158fb6701c30b171"
     },
     {
       "path": "tools/lincoln/src/cli.tsx",

package/framework/tools/lincoln/package-lock.json

@@ -1,12 +1,12 @@
 {
   "name": "@sushanglewis/lincoln",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "@sushanglewis/lincoln",
-      "version": "1.5.2",
+      "version": "1.5.4",
       "license": "MIT",
       "dependencies": {
         "ink": "^5.2.0",

package/framework/tools/lincoln/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sushanglewis/lincoln-recorder",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "Cross-tool terminal UI for recording Lincoln interviews",
   "type": "module",
   "main": "./dist/index.js",

package/framework/tools/lincoln-installer/package.json

@@ -1,6 +1,6 @@
 {
   "name": "lincoln-install",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "Terminal TUI installer for the Lincoln AI-Native R&D workflow system",
   "type": "module",
   "main": "dist/main.js",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sushanglewis/lincoln",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "Global Lincoln agent harness plugin CLI",
   "type": "module",
   "main": "./dist/index.js",