@superbee/core 0.2.0-pre.5 → 0.2.0-pre.8

package/README.md

@@ -0,0 +1,89 @@
+# @superbee/core
+
+The Superbee knowledge engine reads and writes Open Knowledge Format bundles, with versioned
+writes, cross-links and storage backends. It is a library; installing it does not install the
+`superbee` executable.
+
+Core and `@superbee/server` are released together, independently of the `superbee` CLI. A CLI
+release bundles the engine source selected at build time; it does not load `@superbee/core@latest`.
+
+## Filesystem platform migration
+
+The Windows extraction changes the default Node.js filesystem backend. Its built-in host policy
+supports macOS and Linux. On native Windows or another unsupported host, filesystem construction
+requires an explicit `FilesystemHostPolicy`; there is no automatic Windows fallback.
+
+| Entry point | Default on macOS/Linux | On other hosts |
+| --- | --- | --- |
+| `new FilesystemBackend(root)` | Uses the built-in policy | Pass `{ hostPolicy }` as the second argument |
+| `initBundle(root, options)` | Uses the built-in policy | Pass `{ hostPolicy }` as the third argument |
+| `createFilesystemRuntime()` | Captures the built-in policy | Pass a host policy as its argument |
+| `withFilesystemMutationLock(target, body, options)` | Uses the built-in policy | Include `hostPolicy` in `options` |
+| `filesystemMutationLockPath(target, portableRoot)` | Uses the built-in policy | Pass a host policy as the third argument |
+
+Without that policy, these filesystem entry points throw `InvalidInputError` on unsupported hosts;
+backend construction and bundle initialization refuse before creating or modifying the target.
+The package has no npm `os` restriction: storage contracts and non-filesystem backends remain
+available independently of the default filesystem policy. Choose a backend and imports appropriate
+to your runtime; installing the library alone does not establish native filesystem support.
+
+There is no Windows adapter on npm to install. The experimental first-party adapters are built
+from source in a separate repository, https://github.com/Holaxis-ai/superbee-windows-cli.
+Supplying a policy is an integration contract for an adapter owner, not a promise that arbitrary
+policies make Windows supported.
+
+## Keep the backend returned by initBundle
+
+`initBundle` now returns `{ root, backend }`. Pass that returned bundle to engine operations so they
+retain the backend and host policy selected during initialization:
+
+```ts
+import { initBundle, readDoc, writeDoc } from '@superbee/core';
+
+const bundle = await initBundle('./knowledge'); // Default filesystem: macOS/Linux.
+await writeDoc(bundle, {
+  id: 'notes/example',
+  frontmatter: { type: 'Note', title: 'Example' },
+  body: 'Shared knowledge.\n',
+});
+const document = await readDoc(bundle, 'notes/example');
+```
+
+Reading `bundle.root` still works. Code that assumes the return value has exactly one property,
+serializes the whole return value, or uses backend presence as a synonym for a remote bundle must
+be updated. A filesystem bundle now has a backend too. Serialize only the fields your application
+intends to persist; do not reconstruct `{ root: bundle.root }` when continuing engine operations
+that need the selected backend.
+
+## Integrating an explicit filesystem policy
+
+`@superbee/core/filesystem` exports `createFilesystemRuntime`, `FilesystemBackend`, and the
+`FilesystemHostPolicy` type. An application that owns its host adapter can bind it once:
+
+```ts
+import { createFilesystemRuntime, type FilesystemHostPolicy } from '@superbee/core/filesystem';
+
+export async function openFilesystemBundle(root: string, hostPolicy: FilesystemHostPolicy) {
+  const filesystem = createFilesystemRuntime(hostPolicy);
+  return filesystem.initBundle(root);
+}
+```
+
+The resulting runtime supplies `backend`, `initBundle`, `withMutationLock`, and `mutationLockPath`
+with the same captured policy. Direct backend construction uses
+`new FilesystemBackend(root, { hostPolicy })`. Lock helpers are also exported from `@superbee/core`.
+
+A policy supplies the lock-parent directory, owner-namespace key, private-mode enforcement choice,
+and host error classifications. Core still owns lock ownership, version checks, retry bounds and
+cleanup. Policies are structural snapshots: public data and methods are captured, while callbacks
+may continue to observe live operating-system facts. Do not use opaque private fields or methods
+pre-bound to a mutable receiver.
+
+## Release compatibility
+
+This migration describes the source after the Windows extraction. Previously published versions
+are unchanged. Consult the release notes for the first affected version before upgrading a pinned
+consumer. CLI and engine version numbers are independent; do not infer matching embedded code from
+package names or version labels.
+
+[Source and contribution guide](https://github.com/Holaxis-ai/superbee)

package/dist/bundle-ops.d.ts

@@ -32,7 +32,7 @@ export declare function query(bundle: Bundle, filter?: QueryFilter, options?: en
 export declare const list: typeof query;
 export declare function queryHeads(bundle: Bundle, filter?: QueryFilter, options?: engine.QueryOptions): Promise<HeadResult[]>;
 export declare function parseLinks(_bundle: Bundle, doc: OkfDocument): Link[];
-export declare function queryEdges(bundle: Bundle, filter?: EdgeFilter): Promise<Link[]>;
+export declare function queryEdges(bundle: Bundle, filter?: EdgeFilter, options?: engine.QueryOptions): Promise<Link[]>;
 export declare function backlinks(bundle: Bundle, target: ConceptId): Promise<Link[]>;
 export declare function readBlob(bundle: Bundle, key: BlobKey): Promise<ReadBlobResult | null>;
 export declare function writeBlob(bundle: Bundle, key: BlobKey, bytes: Uint8Array, contentType?: string, options?: WriteOptions): Promise<Version>;

package/dist/bundle-ops.d.ts.map

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package/dist/bundle-ops.js

@@ -64,8 +64,8 @@ export async function queryHeads(bundle, filter = {}, options = {}) {
 export function parseLinks(_bundle, doc) {
     return engine.parseLinks(doc);
 }
-export async function queryEdges(bundle, filter = {}) {
-    return engine.queryEdges(backendFor(bundle), filter);
+export async function queryEdges(bundle, filter = {}, options = {}) {
+    return engine.queryEdges(backendFor(bundle), filter, options);
 }
 export async function backlinks(bundle, target) {
     return engine.backlinks(backendFor(bundle), target);

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+{"version":3,"file":"bundle-ops.js","sourceRoot":"","sources":["../src/bundle-ops.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,MAAM,MAAM,aAAa,CAAC;AACtC,OAAO,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AAwBhD,IAAI,qBAAwD,CAAC;AAE7D;;;;GAIG;AACH,MAAM,UAAU,wBAAwB,CAAC,OAA0C;IACjF,qBAAqB,GAAG,OAAO,CAAC;AAClC,CAAC;AAED,gEAAgE;AAChE,MAAM,UAAU,UAAU,CAAC,MAAc;IACvC,IAAI,MAAM,CAAC,OAAO;QAAE,OAAO,MAAM,CAAC,OAAO,CAAC;IAC1C,IAAI,qBAAqB,KAAK,SAAS,EAAE,CAAC;QACxC,MAAM,IAAI,iBAAiB,CACzB,WAAW,MAAM,CAAC,IAAI,yDAAyD;YAC7E,+EAA+E,CAClF,CAAC;IACJ,CAAC;IACD,OAAO,qBAAqB,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;AAC5C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CAAC,MAAc;IACvD,OAAO,MAAM,CAAC,oBAAoB,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC;AACzD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,MAAc,EACd,GAAgB,EAChB,OAAsB;IAEtB,OAAO,MAAM,CAAC,iBAAiB,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,OAAO,CAAC,CAAC;AACpE,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,2BAA2B,CAC/C,MAAc,EACd,GAAgB,EAChB,UAAkB,EAClB,OAAsB;IAEtB,OAAO,MAAM,CAAC,2BAA2B,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC;AAC1F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,CAC5B,MAAc,EACd,GAAgB,EAChB,OAAsB;IAEtB,OAAO,MAAM,CAAC,QAAQ,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,OAAO,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,MAAc,EAAE,EAAa;IAClE,OAAO,MAAM,CAAC,gBAAgB,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;AACzD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,MAAc,EAAE,EAAa;IACzD,OAAO,MAAM,CAAC,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;AAChD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,MAAc,EAAE,EAAa;IAC3D,OAAO,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;AAClD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,MAAc,EAAE,EAAa;IAC7D,OAAO,MAAM,CAAC,WAAW,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC;AACpD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,MAAc,EAAE,EAAa,EAAE,OAAuB;IACpF,OAAO,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,OAAO,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,KAAK,CACzB,MAAc,EACd,SAAsB,EAAE,EACxB,UAA+B,EAAE;IAEjC,OAAO,MAAM,CAAC,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,CAAC,MAAM,IAAI,GAAG,KAAK,CAAC;AAE1B,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,MAAc,EACd,SAAsB,EAAE,EACxB,UAA+B,EAAE;IAEjC,OAAO,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,OAAe,EAAE,GAAgB;IAC1D,OAAO,MAAM,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;AAChC,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,MAAc,EACd,SAAqB,EAAE,EACvB,UAA+B,EAAE;IAEjC,OAAO,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;AAChE,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,MAAc,EAAE,MAAiB;IAC/D,OAAO,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,CAAC;AACtD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,CAAC,MAAc,EAAE,GAAY;IACzD,OAAO,MAAM,CAAC,QAAQ,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,CAAC,CAAC;AAClD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,MAAc,EACd,GAAY,EACZ,KAAiB,EACjB,WAAoB,EACpB,OAAsB;IAEtB,OAAO,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,CAAC;AAChF,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,MAAc,EAAE,GAAY;IAC3D,OAAO,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,CAAC,CAAC;AACpD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,MAAc,EAAE,MAAe;IAC7D,OAAO,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,CAAC;AACtD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,MAAc,EAAE,GAAY,EAAE,OAAuB;IACpF,OAAO,MAAM,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,GAAG,EAAE,OAAO,CAAC,CAAC;AAC7D,CAAC"}

package/dist/document-codec.d.ts

@@ -8,6 +8,10 @@ export { resolveContentType } from "./content-type.js";
 export { captureRemoteFrontmatter, RemoteDocumentValueError } from "./remote-document-codec.js";
 export type { Frontmatter, OkfDocument, Version } from "./types.js";
 import type { Version } from "./types.js";
-/** SHA-256 version of exact bytes, including binary data, using Web Crypto. */
+/**
+ * SHA-256 version of exact bytes, including binary data. Minted by the same pure
+ * implementation as every other version token, so one digest owner serves Node and
+ * browser runtimes; the async signature is kept for the codec's existing callers.
+ */
 export declare function versionFromBytes(bytes: Uint8Array): Promise<Version>;
 //# sourceMappingURL=document-codec.d.ts.map

package/dist/document-codec.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"document-codec.d.ts","sourceRoot":"","sources":["../src/document-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EACL,aAAa,EACb,YAAY,EACZ,iBAAiB,EACjB,+BAA+B,EAC/B,sBAAsB,GACvB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAChG,YAAY,EAAE,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAEpE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAE1C,+EAA+E;AAC/E,wBAAsB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,OAAO,CAAC,OAAO,CAAC,CAI1E"}
+{"version":3,"file":"document-codec.d.ts","sourceRoot":"","sources":["../src/document-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EACL,aAAa,EACb,YAAY,EACZ,iBAAiB,EACjB,+BAA+B,EAC/B,sBAAsB,GACvB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAChG,YAAY,EAAE,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAGpE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAE1C;;;;GAIG;AACH,wBAAsB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,OAAO,CAAC,OAAO,CAAC,CAE1E"}

package/dist/document-codec.js

@@ -6,10 +6,13 @@
 export { parseMarkdown, stringifyDoc, stringifyWithData, normalizeDocumentBodyForStorage, MalformedDocumentError, } from "./frontmatter.js";
 export { resolveContentType } from "./content-type.js";
 export { captureRemoteFrontmatter, RemoteDocumentValueError } from "./remote-document-codec.js";
-/** SHA-256 version of exact bytes, including binary data, using Web Crypto. */
+import { sha256HexOfBytes } from "./sha256.js";
+/**
+ * SHA-256 version of exact bytes, including binary data. Minted by the same pure
+ * implementation as every other version token, so one digest owner serves Node and
+ * browser runtimes; the async signature is kept for the codec's existing callers.
+ */
 export async function versionFromBytes(bytes) {
-    const digest = await globalThis.crypto.subtle.digest("SHA-256", new Uint8Array(bytes).buffer);
-    const hex = Array.from(new Uint8Array(digest), (byte) => byte.toString(16).padStart(2, "0")).join("");
-    return `sha256:${hex}`;
+    return `sha256:${sha256HexOfBytes(bytes)}`;
 }
 //# sourceMappingURL=document-codec.js.map

package/dist/document-codec.js.map

@@ -1 +1 @@
-{"version":3,"file":"document-codec.js","sourceRoot":"","sources":["../src/document-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EACL,aAAa,EACb,YAAY,EACZ,iBAAiB,EACjB,+BAA+B,EAC/B,sBAAsB,GACvB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAKhG,+EAA+E;AAC/E,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,KAAiB;IACtD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,SAAS,EAAE,IAAI,UAAU,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC;IAC9F,MAAM,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACtG,OAAO,UAAU,GAAG,EAAE,CAAC;AACzB,CAAC"}
+{"version":3,"file":"document-codec.js","sourceRoot":"","sources":["../src/document-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EACL,aAAa,EACb,YAAY,EACZ,iBAAiB,EACjB,+BAA+B,EAC/B,sBAAsB,GACvB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AAGhG,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAG/C;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,KAAiB;IACtD,OAAO,UAAU,gBAAgB,CAAC,KAAK,CAAC,EAAE,CAAC;AAC7C,CAAC"}

package/dist/document-write-policy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"document-write-policy.d.ts","sourceRoot":"","sources":["../src/document-write-policy.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAQ3D,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAE5C;;;;GAIG;AACH,wBAAgB,4BAA4B,CAC1C,GAAG,EAAE,WAAW,EAChB,aAAa,EAAE,MAAM,EACrB,SAAS,EAAE;IAAE,gBAAgB,EAAE,IAAI,CAAC;IAAC,iBAAiB,EAAE,MAAM,CAAA;CAAE,GAC5D;IAAE,gBAAgB,EAAE,KAAK,CAAC;IAAC,iBAAiB,EAAE,MAAM,CAAA;CAAE,GACzD,WAAW,CASb;AAED;;;GAGG;AACH,wBAAgB,4BAA4B,CAAC,GAAG,EAAE,WAAW,EAAE,aAAa,EAAE,MAAM,GAAG,WAAW,CAGjG;AAuBD,mGAAmG;AACnG,wBAAgB,2BAA2B,CACzC,QAAQ,EAAE,IAAI,CAAC,WAAW,EAAE,aAAa,GAAG,MAAM,CAAC,EACnD,SAAS,EAAE,IAAI,CAAC,WAAW,EAAE,aAAa,GAAG,MAAM,CAAC,EACpD,OAAO,GAAE;IAAE,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAAC,gBAAgB,CAAC,EAAE,OAAO,CAAA;CAAO,GACxE,OAAO,CAkBT;AAED,MAAM,WAAW,0BAA0B;IACzC,QAAQ,CAAC,EAAE,IAAI,CAAC,WAAW,EAAE,aAAa,GAAG,MAAM,CAAC,CAAC;IACrD,SAAS,EAAE;QAAE,WAAW,EAAE,WAAW,CAAC;QAAC,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC;IACtD,kBAAkB,EAAE,MAAM,CAAC;IAC3B,mFAAmF;IACnF,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;qFACiF;IACjF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,6FAA6F;IAC7F,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,8FAA8F;IAC9F,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,8FAA8F;IAC9F,4BAA4B,CAAC,EAAE,OAAO,CAAC;IACvC,8FAA8F;IAC9F,sBAAsB,CAAC,EAAE,OAAO,CAAC;CAClC;AAED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,0BAA0B,GAAG;IAC1E,WAAW,EAAE,WAAW,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;CACd,CAKA"}
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package/dist/document-write-policy.js

@@ -23,7 +23,9 @@ export function normalizeV01DocumentForWrite(doc, validatedType, timestamp) {
     // `type` leads and `timestamp` trails, matching OKF sample documents and historical bytes.
     const { type: _type, timestamp: _timestamp, ...rest } = doc.frontmatter;
     const frontmatter = { type: validatedType, ...rest, timestamp: normalizedTimestamp };
-    return { id: doc.id, frontmatter, body: doc.body ?? "" };
+    // The body is normalized for storage here so the returned doc IS the persisted doc —
+    // the same canonical shape every backend reports on a subsequent read.
+    return { id: doc.id, frontmatter, body: normalizeDocumentBodyForStorage(doc.body ?? "") };
 }
 /**
  * Normalize a v0.2 document without inventing optional provenance or legacy clock fields.
@@ -31,7 +33,7 @@ export function normalizeV01DocumentForWrite(doc, validatedType, timestamp) {
  */
 export function normalizeV02DocumentForWrite(doc, validatedType) {
     const { type: _type, ...rest } = doc.frontmatter;
-    return { id: doc.id, frontmatter: { type: validatedType, ...rest }, body: doc.body ?? "" };
+    return { id: doc.id, frontmatter: { type: validatedType, ...rest }, body: normalizeDocumentBodyForStorage(doc.body ?? "") };
 }
 function withoutV02AutomaticMetadata(frontmatter, kindRequiresActor, compareTimestamp) {
     const copy = { ...frontmatter };

package/dist/document-write-policy.js.map

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package/dist/engine.d.ts

@@ -40,7 +40,7 @@ export declare function query(backend: StorageBackend, filter?: QueryFilter, opt
 export declare const list: typeof query;
 export declare function queryHeads(backend: StorageBackend, filter?: QueryFilter, options?: QueryOptions): Promise<HeadResult[]>;
 export declare function parseLinks(doc: OkfDocument): Link[];
-export declare function queryEdges(backend: StorageBackend, filter?: EdgeFilter): Promise<Link[]>;
+export declare function queryEdges(backend: StorageBackend, filter?: EdgeFilter, options?: QueryOptions): Promise<Link[]>;
 export declare function backlinks(backend: StorageBackend, target: ConceptId): Promise<Link[]>;
 export declare function readBlob(backend: StorageBackend, key: BlobKey): Promise<ReadBlobResult | null>;
 export declare function writeBlob(backend: StorageBackend, key: BlobKey, bytes: Uint8Array, contentType?: string, options?: WriteOptions): Promise<Version>;

package/dist/engine.d.ts.map

@@ -1 +1 @@
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package/dist/engine.js

@@ -137,7 +137,8 @@ export async function query(backend, filter = {}, options = {}) {
 export const list = query;
 export async function queryHeads(backend, filter = {}, options = {}) {
     if (backend.queryHeads) {
-        const rows = (await backend.queryHeads(filter)).filter((row) => matchesFilter(row, filter));
+        const rows = (await backend.queryHeads(filter, options.onSkip ? { onSkip: options.onSkip } : undefined))
+            .filter((row) => matchesFilter(row, filter));
         rows.sort((a, b) => a.id.localeCompare(b.id));
         return rows;
     }
@@ -169,11 +170,11 @@ function toSelectorList(value) {
         return undefined;
     return Array.isArray(value) ? value : [value];
 }
-export async function queryEdges(backend, filter = {}) {
+export async function queryEdges(backend, filter = {}, options = {}) {
     const fromSelectors = toSelectorList(filter.from)?.map(normalizeEdgeSelector);
     const toSelectors = toSelectorList(filter.to)?.map(normalizeEdgeSelector);
     const edges = [];
-    for (const doc of await query(backend)) {
+    for (const doc of await query(backend, {}, options)) {
         for (const link of parseLinksFromDoc(doc)) {
             if (!matchesEdgeSelector(link.from, fromSelectors))
                 continue;

package/dist/engine.js.map

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package/dist/file-journaled-backend-internal.d.ts

@@ -0,0 +1,19 @@
+/**
+ * @internal Test seams of the Node log store. This module is not in the package's `exports`, so
+ * no consumer of `@superbee/core` can reach these keys; the store's own tests import them from
+ * source to inject a failing log handle and to plant raw document bytes.
+ */
+/** The file operations the store performs on its log; a test substitutes a handle that fails on cue. */
+export interface FileJournalHandle {
+    write(buffer: Uint8Array, offset: number, length: number, position: number): Promise<{
+        bytesWritten: number;
+    }>;
+    sync(): Promise<void>;
+    truncate(length: number): Promise<void>;
+    close(): Promise<void>;
+}
+/** Option key: `(file) => Promise<FileJournalHandle>`, opening the existing log for positional writes. */
+export declare const OPEN_LOG: unique symbol;
+/** Method key: `(id, raw) => Promise<void>`, planting exact bytes as a document's stored serialization. */
+export declare const STORE_RAW: unique symbol;
+//# sourceMappingURL=file-journaled-backend-internal.d.ts.map

package/dist/file-journaled-backend-internal.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"file-journaled-backend-internal.d.ts","sourceRoot":"","sources":["../src/file-journaled-backend-internal.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,wGAAwG;AACxG,MAAM,WAAW,iBAAiB;IAChC,KAAK,CAAC,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,YAAY,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAC/G,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IACtB,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IACxC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;CACxB;AAED,0GAA0G;AAC1G,eAAO,MAAM,QAAQ,EAAE,OAAO,MAA+C,CAAC;AAE9E,2GAA2G;AAC3G,eAAO,MAAM,SAAS,EAAE,OAAO,MAAgD,CAAC"}

package/dist/file-journaled-backend-internal.js

@@ -0,0 +1,10 @@
+/**
+ * @internal Test seams of the Node log store. This module is not in the package's `exports`, so
+ * no consumer of `@superbee/core` can reach these keys; the store's own tests import them from
+ * source to inject a failing log handle and to plant raw document bytes.
+ */
+/** Option key: `(file) => Promise<FileJournalHandle>`, opening the existing log for positional writes. */
+export const OPEN_LOG = Symbol("superbee.fileJournal.openLog");
+/** Method key: `(id, raw) => Promise<void>`, planting exact bytes as a document's stored serialization. */
+export const STORE_RAW = Symbol("superbee.fileJournal.storeRaw");
+//# sourceMappingURL=file-journaled-backend-internal.js.map

package/dist/file-journaled-backend-internal.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"file-journaled-backend-internal.js","sourceRoot":"","sources":["../src/file-journaled-backend-internal.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAUH,0GAA0G;AAC1G,MAAM,CAAC,MAAM,QAAQ,GAAkB,MAAM,CAAC,8BAA8B,CAAC,CAAC;AAE9E,2GAA2G;AAC3G,MAAM,CAAC,MAAM,SAAS,GAAkB,MAAM,CAAC,+BAA+B,CAAC,CAAC"}

package/dist/file-journaled-backend.d.ts

@@ -0,0 +1,162 @@
+/**
+ * Experimental (`0.2.0-pre`): the API and the on-disk format may change before a stable release.
+ *
+ * A Node {@link JournaledBackend}: the private store behind a CLI working copy, proven by the
+ * same contract kit as the IndexedDB adapter. It is an append-only, checksummed transaction log
+ * over an in-memory index, in one directory the store owns:
+ *
+ * - `store.log` holds one record per transaction. A record is the transaction's effect as a list
+ *   of absolute puts and removals over the five record families (documents, reserved files,
+ *   blobs, intents, meta) plus the intent sequence, framed as magic, format version, length,
+ *   SHA-256 of the payload, payload. The payload is tagged JSON this module owns, so the bytes
+ *   never depend on the Node version that wrote them. Every check a verb makes runs synchronously against the index before its
+ *   record is written; the record is written at the log's end and fsynced, and only then applied
+ *   to the index and the verb resolved. So a resolved write survives a crash, a rejected one
+ *   left nothing behind, and a record that was never fsynced was never acknowledged.
+ * - `store.snapshot` is the whole index at one transaction number, written by {@link compact}:
+ *   write a temporary file, fsync it, rename it over the snapshot, fsync the directory, then
+ *   truncate the log. A crash at any point in that sequence leaves either the old snapshot and
+ *   the whole log, or the new snapshot and log records it already covers, which open skips by
+ *   transaction number.
+ *
+ * At open the snapshot is loaded and the log replayed. Bytes after the last whole record are a
+ * torn write (the one append that can be interrupted, never acknowledged, its pages persisted in
+ * any order) and are truncated away, unless a whole record begins inside them: that is
+ * corruption, and open refuses without touching the files. One transaction spans documents, intents and meta, which is what the seam requires:
+ * the engine settles an intent together with the global pause flag, and writes a receipt, a
+ * base and a body record at once.
+ *
+ * The store holds an exclusive same-user cross-process lock on its directory from open to
+ * {@link close}, so a second process cannot replay a log another process is appending to, and
+ * compaction always runs under that lock. Within the process, mutations are serialized; reads
+ * never wait for them and always see the last committed transaction.
+ *
+ * Durability is `fsync`: a resolved mutation's record was fsynced, and so was the directory
+ * entry of every file the store created. On macOS `fsync` does not force the drive's own cache
+ * (Node exposes no `F_FULLFSYNC`), which is the same promise every Node program gets there.
+ */
+import { OPEN_LOG, STORE_RAW, type FileJournalHandle } from "./file-journaled-backend-internal.js";
+import { type FilesystemHostPolicy } from "./filesystem-host.js";
+import { type FilesystemMutationLockOptions } from "./filesystem-lock.js";
+import { type IntentPatch, type IntentRecord, type IntentUpdateOptions, type JournaledBackend, type JournaledDeleteOptions, type JournaledDeleteResult, type JournaledHead, type JournaledHeadsOptions, type JournaledReadResult, type RetireAcknowledgedOptions, type JournaledWriteOptions, type MetaWriteOptions } from "./journaled-backend.js";
+import type { OperationState } from "./uncertain-write.js";
+import type { BlobKey, ConceptId, DeleteOptions, OkfDocument, ReadBlobResult, ReadResult, ReservedFilename, ReservedReadResult, StorageCapabilities, Version, VersionInfo, WriteOptions } from "./types.js";
+/** Bumping this requires a reader for the older layout; open refuses any other format. */
+export declare const FILE_JOURNAL_FORMAT_VERSION = 1;
+export declare const FILE_JOURNAL_LOG = "store.log";
+export declare const FILE_JOURNAL_SNAPSHOT = "store.snapshot";
+/** The store's files do not hold a log or snapshot this adapter wrote; open changes nothing. */
+export declare class FileJournalCorruptError extends Error {
+    readonly name: string;
+    readonly file: string;
+    readonly offset: number | undefined;
+    constructor(file: string, message: string, offset?: number);
+}
+/** A whole, checksummed record or snapshot in a format this adapter does not read (a newer store wrote it). */
+export declare class FileJournalFormatError extends FileJournalCorruptError {
+    readonly name = "FileJournalFormatError";
+    readonly format: number;
+    constructor(file: string, format: number, offset?: number);
+}
+/**
+ * The store cannot tell whether its last append reached the disk (the append failed and so did
+ * removing it), or it was closed. Every later call rejects; reopening decides from the files.
+ */
+export declare class FileJournalUnavailableError extends Error {
+    readonly name = "FileJournalUnavailableError";
+}
+/** A value the codec cannot persist; the mutation carrying it is refused before anything is written. */
+export declare class FileJournalValueError extends TypeError {
+    readonly name = "FileJournalValueError";
+}
+export interface FileJournaledBackendOptions {
+    /** The directory that holds this store's log and snapshot. Created (mode 0700) when absent. */
+    directory: string;
+    /**
+     * The store's exclusive lock: how long open waits for another holder, and, for isolated
+     * tests, the lock namespace. The default waits five seconds in the per-user runtime namespace.
+     */
+    lock?: Pick<FilesystemMutationLockOptions, "waitMs" | "pollMs" | "lockRoot">;
+    /**
+     * The trusted host construction, as every Node filesystem protocol in core takes it. Omitted,
+     * the supported default (macOS and Linux); another host (the Windows distribution) passes its
+     * own. It decides the lock namespace and which replacement errors are transient.
+     */
+    hostPolicy?: FilesystemHostPolicy;
+    /** Open compacts when the log is larger than this many bytes. Default 8 MiB. */
+    compactAfterBytes?: number;
+    /**
+     * Open an existing store to read it and change no file in its directory: no directory or log is
+     * created, a torn log tail is ignored rather than truncated, nothing is compacted, and every
+     * mutation (and `compact`) is refused. The lock is still taken, so no writer runs meanwhile.
+     */
+    readOnly?: boolean;
+}
+/**
+ * The Node working copy's persistent store: one directory, one exclusive lock, one log. Open it
+ * with {@link FileJournaledBackend.open}; {@link close} releases the lock.
+ */
+export declare class FileJournaledBackend implements JournaledBackend {
+    #private;
+    readonly journalSnapshotCas: true;
+    /** A resolved mutation's log record, and every directory entry the store created, were fsynced. */
+    readonly durability: "fsync";
+    readonly directory: string;
+    private constructor();
+    /**
+     * Claim the directory's lock, load the snapshot, replay the log, and truncate a torn tail. A
+     * corrupt snapshot or a corrupt record before the log's end refuses the open and changes no
+     * file. Compacts when the log is larger than `compactAfterBytes`.
+     */
+    static open(options: FileJournaledBackendOptions): Promise<FileJournaledBackend>;
+    /** @internal The test seam: open with a substitute log handle. Reachable only through {@link OPEN_LOG}. */
+    static [OPEN_LOG](options: FileJournaledBackendOptions, openLog: (file: string) => Promise<FileJournalHandle>): Promise<FileJournaledBackend>;
+    capabilities(): StorageCapabilities;
+    /** The number of the last committed transaction; it grows by one per mutation that wrote. */
+    get transaction(): number;
+    /** Let queued mutations finish, close the log, and release the directory's lock. Later calls reject. */
+    close(): Promise<void>;
+    /**
+     * Write the whole index as the snapshot and empty the log: a temporary file, fsynced, renamed
+     * over the snapshot, the directory fsynced, then the log truncated. Serialized with mutations,
+     * under the directory lock the store holds.
+     */
+    compact(): Promise<void>;
+    read(id: ConceptId): Promise<ReadResult>;
+    readMany(ids: ConceptId[]): Promise<ReadResult[]>;
+    write(id: ConceptId, doc: OkfDocument, options?: WriteOptions): Promise<Version>;
+    delete(id: ConceptId, options?: DeleteOptions): Promise<boolean>;
+    exists(id: ConceptId): Promise<boolean>;
+    list(prefix?: string): Promise<ConceptId[]>;
+    versions(id: ConceptId): Promise<VersionInfo[]>;
+    readReserved(dir: string, name: ReservedFilename): Promise<ReservedReadResult | null>;
+    writeReserved(dir: string, name: ReservedFilename, content: string, options?: WriteOptions): Promise<Version>;
+    readBlob(key: BlobKey): Promise<ReadBlobResult | null>;
+    writeBlob(key: BlobKey, bytes: Uint8Array, contentType?: string, options?: WriteOptions): Promise<Version>;
+    deleteBlob(key: BlobKey, options?: DeleteOptions): Promise<boolean>;
+    existsBlob(key: BlobKey): Promise<boolean>;
+    listBlobs(prefix?: string): Promise<BlobKey[]>;
+    writeJournaled(id: ConceptId, doc: OkfDocument, options?: JournaledWriteOptions): Promise<{
+        version: Version;
+        raw: string;
+        intent: IntentRecord | null;
+    }>;
+    deleteJournaled(id: ConceptId, options?: JournaledDeleteOptions): Promise<JournaledDeleteResult>;
+    readWithJournal(id: ConceptId, options?: {
+        meta?: readonly string[];
+    }): Promise<JournaledReadResult>;
+    readHeads<T = JournaledHead>(options?: JournaledHeadsOptions<T>): Promise<T[]>;
+    listIntents(state?: OperationState | readonly OperationState[]): Promise<IntentRecord[]>;
+    readIntent(requestId: string): Promise<IntentRecord | undefined>;
+    updateIntent(requestId: string, expectedState: OperationState, patch: IntentPatch, options?: IntentUpdateOptions): Promise<IntentRecord>;
+    retireAcknowledged(target: ConceptId, options: RetireAcknowledgedOptions): Promise<void>;
+    readMeta<T = unknown>(key: string): Promise<T | undefined>;
+    /**
+     * @internal Plant exact bytes as `id`'s stored serialization, bypassing the serializer, through
+     * the log like any other write: the contract kit's malformed-record and edition rows. Reachable
+     * only through {@link STORE_RAW}.
+     */
+    [STORE_RAW](id: ConceptId, raw: string): Promise<void>;
+    writeMeta(key: string, value: unknown, options?: MetaWriteOptions): Promise<void>;
+}
+//# sourceMappingURL=file-journaled-backend.d.ts.map

package/dist/file-journaled-backend.d.ts.map

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